Citrus Sinensis ID: 016547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MFLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Secondary Structure (PSIPRED)
cccccccccEEccccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccEEEEEcccccEEEEccccccccEEcccccccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccccEEEEccccccEEEEEEccccccEEEEEcccccEEEEEccccccccccccEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccEEEEcccccccEEEEEEccccccEEEEEEccccccccccEEEEEEccccccccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHcccccccccEEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEccccccccccccccccccEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEccccccccEEEEccccccEEEEEEccccccEEEEEcccccEEEEEcccccccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccccccccccccccccHHHEEcccccccEEEEEEcccccEEEEEccccccccccccEEEEEEcccccccccccEEEEEccccccEEEEEccc
Coil and Loop (DISEMBL)
MFLWTFAMLLFQFNeearspfvkkhktiihpgevnrirelpqntkivathtdspdvliwdveaqpnrhavlgatnsrpdliltghqdnaefalamcptepyvlsggkdkSVVLWSIQdhitssatdpataksagssgsiikqspkpgdgndkaadgpsvgprgiynghedtvedvtfcpssaqefcsvgddsclilwdarvgtspvikvekahdadlhcvdwnplddnliltgsadnsvrmfdrrnltsngvgspinkfegHSAAVLCVqwspdkssvfgssaedgllNIWDYEKvgkkveqgprttnypaglffqhaghrdkvvdfhwnasdpwtvvsvsddcdstggggtlQIWRMsdliyrpqDEVLAELEKFKAHVISCTSKP
Flexible Loop (DISEMBL)
MFLWTFAMLLFQFNEearspfvkkhktiihpgevnrirelpqnTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHitssatdpataksagssgsiikqspkpgdgndKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Low Complexity Region (SEG)
MFLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWtvvsvsddcdstggggtLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Disordered region (IsUnstruct)
*FLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI*******************************************IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC****
Disordered Region (DISOPRED)
MFLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP***********RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG***********YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR**DEVLAELEKFKAHVISCTSKP
Disordered Region (DISEMBL)
MFLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT*****************IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH********
Disordered Region (DISPRO)
MFLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
O22607	507	WD-40 repeat-containing p	yes	no	0.950	0.725	0.821	0.0
Q9SU78	487	WD-40 repeat-containing p	no	no	0.935	0.743	0.792	1e-175
Q9I8G9	424	Histone-binding protein R	yes	no	0.770	0.702	0.350	2e-45
Q60972	425	Histone-binding protein R	yes	no	0.749	0.682	0.346	4e-45
Q09028	425	Histone-binding protein R	yes	no	0.749	0.682	0.346	4e-45
Q3MHL3	425	Histone-binding protein R	yes	no	0.749	0.682	0.346	4e-45
Q54SD4	423	Probable histone-binding	yes	no	0.762	0.697	0.335	4e-45
Q5RF92	425	Histone-binding protein R	yes	no	0.749	0.682	0.346	5e-45
Q5M7K4	425	Histone-binding protein R	yes	no	0.749	0.682	0.346	1e-44
Q6INH0	425	Histone-binding protein R	N/A	no	0.749	0.682	0.346	2e-44

>sp|O22607|MSI4_ARATH WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/381 (82%), Positives = 342/381 (89%), Gaps = 13/381 (3%)

Query: 7   AMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 66
           A  + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVE QPN
Sbjct: 140 AEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPN 199

Query: 67  RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126
           RHAVLGA NSRPDLILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+  TD
Sbjct: 200 RHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTD 259

Query: 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186
                 + SSGSIIKQ+   G+G DK  + P+VGPRG+Y+GHEDTVEDV F P+SAQEFC
Sbjct: 260 ------SKSSGSIIKQT---GEGTDKN-ESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFC 309

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           SVGDDSCLILWDAR GT+PV KVEKAHDADLHCVDWNP DDNLILTGSADN+VR+FDRR 
Sbjct: 310 SVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRK 369

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
           LT+NGVGSPI KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK +   R 
Sbjct: 370 LTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSD---RA 426

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366
              PAGLFFQHAGHRDKVVDFHWNASDPWT+VSVSDDC++TGGGGTLQIWRMSDLIYRP+
Sbjct: 427 AKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPE 486

Query: 367 DEVLAELEKFKAHVISCTSKP 387
           +EV+AELEKFK+HV++C SKP
Sbjct: 487 EEVVAELEKFKSHVMTCASKP 507

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of the flowering autonomous pathway which positively regulates flowering by promoting transcriptional repression of the flowering repressor FLC. May promote histone deacetylation at the FLC locus leading to the formation of repressive chromatin structures. Also negatively regulates cold-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU78|MSI5_ARATH WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2

 Score =  615 bits (1585), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/375 (79%), Positives = 333/375 (88%), Gaps = 13/375 (3%)

Query: 12  QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
           Q NE+A SPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPD+LIW+ E QP+R+AVL
Sbjct: 125 QLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVL 184

Query: 72  GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
           GA +SRPDL+L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+IQDHIT + +D   +K
Sbjct: 185 GAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSD---SK 241

Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
           S GSS    KQ+   G+G+DK   GPSVGPRGIYNGH+DTVEDV FCPSSAQEFCSVGDD
Sbjct: 242 SPGSS---FKQT---GEGSDKTG-GPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDD 294

Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
           SCL+LWDAR GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+FDRRNLTSNG
Sbjct: 295 SCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNG 354

Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311
           VGSP+ KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E   R T  P 
Sbjct: 355 VGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE---RATKTPD 411

Query: 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA 371
           GLFFQHAGHRDKVVDFHW+  +PWT+VSVSD+C+S GGGGTLQIWRMSDLIYRP+DEVL 
Sbjct: 412 GLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLT 471

Query: 372 ELEKFKAHVISCTSK 386
           ELEKFK+HV +CTSK
Sbjct: 472 ELEKFKSHVFTCTSK 486

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9I8G9|RBBP7_CHICK Histone-binding protein RBBP7 OS=Gallus gallus GN=RBBP7 PE=1 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 173/351 (49%), Gaps = 53/351 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 119 INHEGEVNRARYMPQNPYIIATKTPSADVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 176

Query: 88  NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 147
                      + ++LS   D +V LW I               SAG         PK  
Sbjct: 177 EGYGLSWNSNLKGHLLSASDDHTVCLWDI---------------SAG---------PK-- 210

Query: 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--P 205
                  +G  V  + I+ GH   VEDV +       F SV DD  L++WD R  T+  P
Sbjct: 211 -------EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKP 263

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
              V+ AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 264 SHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 317

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
           +  V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ 
Sbjct: 318 IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKIS 376

Query: 326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--DEVLAELE 374
           DF WN ++PW + SVS+D         +QIW+M++ IY  +  D   AELE
Sbjct: 377 DFSWNPNEPWVICSVSED-------NIMQIWQMAENIYNDEEPDIAAAELE 420

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Gallus gallus (taxid: 9031)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 169/343 (49%), Gaps = 53/343 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178

Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    ++LS   D ++ LW                         I   PK 
Sbjct: 179 EG-YGLSWNPNLSGHLLSASDDHTICLWD------------------------ISAVPK- 212

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367
            DF WN ++PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 169/343 (49%), Gaps = 53/343 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178

Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    ++LS   D ++ LW                         I   PK 
Sbjct: 179 EG-YGLSWNPNLSGHLLSASDDHTICLWD------------------------ISAVPK- 212

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367
            DF WN ++PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 169/343 (49%), Gaps = 53/343 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178

Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    ++LS   D ++ LW                         I   PK 
Sbjct: 179 EG-YGLSWNPNLSGHLLSASDDHTICLWD------------------------ISAVPK- 212

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367
            DF WN ++PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

>sp|Q54SD4|RBBD_DICDI Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 178/346 (51%), Gaps = 51/346 (14%)

Query: 26  KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH 85
           + I H GEVNR R +PQN  I+AT T S +V I+D    P      G  +  P+L LTGH
Sbjct: 116 QKINHEGEVNRARVMPQNHSIIATKTVSSEVYIFDTTKHPLEPTPDGKCS--PNLKLTGH 173

Query: 86  QDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 144
           +    + ++  P  E ++LS   D+S+ +W I           A +KS  +  ++     
Sbjct: 174 KKEG-YGISWNPRKEGHLLSCSDDQSICMWDIS----------AASKSDSTLDAL----- 217

Query: 145 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS 204
                              IYNGH   VEDV +       F SVGDD  L++WD R GT 
Sbjct: 218 ------------------NIYNGHTSIVEDVAWHYIHDTFFGSVGDDKKLMIWDTRTGTK 259

Query: 205 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 264
           P+  VE AH+++++C+ +NP  + L+ TGS D +V ++D RNL     G+ ++    H+ 
Sbjct: 260 PIHVVE-AHNSEVNCLSFNPFCEFLVATGSTDKTVALWDMRNL-----GNRLHSLISHTD 313

Query: 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324
            V  VQ+SP   +V  S   D  +N+WD  ++G++ +      + P  L F H GH  K+
Sbjct: 314 EVFQVQFSPHNETVLASCGSDRRVNVWDLSRIGEE-QNNEDAADGPPELLFIHGGHTSKI 372

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL 370
            DF WN +DPW++ SV++D         LQIW+M++ IY  +++ L
Sbjct: 373 SDFSWNPNDPWSIASVAED-------NILQIWQMAENIYNDREDDL 411

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3

 Score =  182 bits (461), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 169/343 (49%), Gaps = 53/343 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178

Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    ++LS   D ++ LW                         I   PK 
Sbjct: 179 EG-YGLSWNPNLSGHLLSASDDHTICLWD------------------------ISAVPK- 212

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367
            DF WN ++PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Pongo abelii (taxid: 9601)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 168/343 (48%), Gaps = 53/343 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178

Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P     +LS   D ++ LW                         I   PK 
Sbjct: 179 EG-YGLSWNPNLSGNLLSASDDHTICLWD------------------------ISAVPK- 212

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367
            DF WN ++PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-b PE=1 SV=3

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 168/343 (48%), Gaps = 53/343 (15%)

Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178

Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P     +LS   D ++ LW I                           PK 
Sbjct: 179 EG-YGLSWNPNLSGNLLSASDDHTICLWDIS------------------------AVPK- 212

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377

Query: 325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 367
            DF WN ++PW + SVS+D         +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPWVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
255546107	503	WD-repeat protein, putative [Ricinus com	0.966	0.743	0.880	0.0
224112132	502	nucleosome/chromatin assembly factor gro	0.966	0.745	0.894	0.0
224122490	467	nucleosome/chromatin assembly factor gro	0.966	0.800	0.888	0.0
449489878	518	PREDICTED: WD-40 repeat-containing prote	0.968	0.723	0.862	0.0
449435868	512	PREDICTED: WD-40 repeat-containing prote	0.968	0.732	0.862	0.0
356556284	508	PREDICTED: WD-40 repeat-containing prote	0.966	0.736	0.863	0.0
356530364	513	PREDICTED: WD-40 repeat-containing prote	0.966	0.729	0.860	0.0
356530366	504	PREDICTED: WD-40 repeat-containing prote	0.953	0.732	0.866	0.0
346229125	508	FVE protein [Glycine max]	0.966	0.736	0.857	0.0
61611729	515	FVE [Pisum sativum]	0.963	0.724	0.85	0.0

>gi|255546107|ref|XP_002514113.1| WD-repeat protein, putative [Ricinus communis] gi|223546569|gb|EEF48067.1| WD-repeat protein, putative [Ricinus communis]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/377 (88%), Positives = 357/377 (94%), Gaps = 3/377 (0%)

Query: 10  LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 69
           + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN++IVATHTD PDVLIWDVEAQPNRHA
Sbjct: 129 IAQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSRIVATHTDGPDVLIWDVEAQPNRHA 188

Query: 70  VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 129
           VLGATNSRPDLILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+SATDPAT
Sbjct: 189 VLGATNSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITASATDPAT 248

Query: 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189
           AKS GS GSIIK++   G+GND+AA+ PSVGPRGIY GHEDTVEDVTFCPSSAQEFCSVG
Sbjct: 249 AKSPGSGGSIIKRA---GEGNDRAAESPSVGPRGIYQGHEDTVEDVTFCPSSAQEFCSVG 305

Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249
           DDSCLILWDAR+G+SP +KVEKAH+ADLHCVDWNP D+NLI+TGSADNSVRMFDRRNLTS
Sbjct: 306 DDSCLILWDARIGSSPAVKVEKAHNADLHCVDWNPHDNNLIITGSADNSVRMFDRRNLTS 365

Query: 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309
           NGVG+P+ KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY+KVGKK E+  R  N 
Sbjct: 366 NGVGTPVYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRAPNS 425

Query: 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 369
           PAGLFFQHAGHRDKVVDFHWNASDPWT+VSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEV
Sbjct: 426 PAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEV 485

Query: 370 LAELEKFKAHVISCTSK 386
           LAELEKFK+HVI CTSK
Sbjct: 486 LAELEKFKSHVIECTSK 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112132|ref|XP_002332825.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222833256|gb|EEE71733.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/378 (89%), Positives = 353/378 (93%), Gaps = 4/378 (1%)

Query: 10  LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 69
           + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVEAQPNRHA
Sbjct: 129 ISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA 188

Query: 70  VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 129
           VLGATNSRPDLILTGH DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT
Sbjct: 189 VLGATNSRPDLILTGHLDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 248

Query: 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189
            KS GS GSIIK   K GDGNDKA DGPSVGPRGIY GHEDTVEDV FCPSSAQEFCSVG
Sbjct: 249 -KSPGSGGSIIK---KAGDGNDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVG 304

Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249
           DDSCLILWDAR GT+P IKVEKAH+ADLHCVDWNP DDNLILTGSAD SV MFDRRNLTS
Sbjct: 305 DDSCLILWDARDGTNPAIKVEKAHNADLHCVDWNPHDDNLILTGSADTSVCMFDRRNLTS 364

Query: 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309
           NGVGSP+ KFEGH+AAVLCVQWSPDK+SVFGSSAEDGLLNIWDYEKVGK+ E+  R  N 
Sbjct: 365 NGVGSPVYKFEGHNAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKRSERLTRALNS 424

Query: 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 369
           PAGLFFQHAGHRDKVVDFHWNASDPWT+VSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEV
Sbjct: 425 PAGLFFQHAGHRDKVVDFHWNASDPWTLVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEV 484

Query: 370 LAELEKFKAHVISCTSKP 387
           LAELEKFK+HV+SC SKP
Sbjct: 485 LAELEKFKSHVVSCASKP 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122490|ref|XP_002330494.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222872428|gb|EEF09559.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/378 (88%), Positives = 351/378 (92%), Gaps = 4/378 (1%)

Query: 10  LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 69
           + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVEAQPNRHA
Sbjct: 94  ISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHA 153

Query: 70  VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 129
           VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK VVLWSIQDHITSSA+DPAT
Sbjct: 154 VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITSSASDPAT 213

Query: 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189
            KS GS GSIIK   K GDG+DKA DGPSVGPRGIY GHEDTVEDV FCPSSAQEFCSVG
Sbjct: 214 -KSPGSGGSIIK---KTGDGSDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVG 269

Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249
           DDSCLILWDAR GTSP IKVE+AH+ADLHCVDWNP DDNLILTGSAD SV MFDRRNLTS
Sbjct: 270 DDSCLILWDARAGTSPAIKVERAHNADLHCVDWNPQDDNLILTGSADTSVCMFDRRNLTS 329

Query: 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309
           NGVG P+ KFEGH AAVLCVQWSPDK+SVFGSSAEDGLLNIWDYEKVGKK E+  R  + 
Sbjct: 330 NGVGLPVYKFEGHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKTERPTRAPSS 389

Query: 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 369
           PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEV
Sbjct: 390 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEV 449

Query: 370 LAELEKFKAHVISCTSKP 387
           LAELEKFK+HV+SC SKP
Sbjct: 450 LAELEKFKSHVVSCASKP 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489878|ref|XP_004158447.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/378 (86%), Positives = 353/378 (93%), Gaps = 3/378 (0%)

Query: 10  LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 69
           + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN++IVATHTDSPDVLIWDVEAQPNRHA
Sbjct: 144 ISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSRIVATHTDSPDVLIWDVEAQPNRHA 203

Query: 70  VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 129
           VLGATNSRPDLILTGHQ+NAEFALAMCPTEPYVLSGGKDK VVLWSIQDHIT+SATD   
Sbjct: 204 VLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITTSATDAGA 263

Query: 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189
           +KS GS GSIIK   KPG+ NDKA+DGPS+GPRG+Y+GHEDTVEDVTFCPS+AQEFCSVG
Sbjct: 264 SKSPGSGGSIIK---KPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVG 320

Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249
           DDSCLILWDAR G+SP +KVEKAH+ADLHCVDWNP DDNLI+TGSADNS+R+FDRRNLTS
Sbjct: 321 DDSCLILWDARTGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRLFDRRNLTS 380

Query: 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309
           NGVGSPI KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY+KVGKK E+  RT   
Sbjct: 381 NGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRTPAA 440

Query: 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 369
           P GLFFQHAGHRDKVVDFHWNA+DPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP++EV
Sbjct: 441 PPGLFFQHAGHRDKVVDFHWNAADPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEEEV 500

Query: 370 LAELEKFKAHVISCTSKP 387
           LAELEKFK+HVI C +KP
Sbjct: 501 LAELEKFKSHVIECAAKP 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435868|ref|XP_004135716.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/378 (86%), Positives = 353/378 (93%), Gaps = 3/378 (0%)

Query: 10  LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA 69
           + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN++IVATHTDSPDVLIWDVEAQPNRHA
Sbjct: 138 ISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSRIVATHTDSPDVLIWDVEAQPNRHA 197

Query: 70  VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT 129
           VLGATNSRPDLILTGHQ+NAEFALAMCPTEPYVLSGGKDK VVLWSIQDHIT+SATD   
Sbjct: 198 VLGATNSRPDLILTGHQENAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITTSATDAGA 257

Query: 130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG 189
           +KS GS GSIIK   KPG+ NDKA+DGPS+GPRG+Y+GHEDTVEDVTFCPS+AQEFCSVG
Sbjct: 258 SKSPGSGGSIIK---KPGEANDKASDGPSIGPRGVYHGHEDTVEDVTFCPSNAQEFCSVG 314

Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS 249
           DDSCLILWDAR G+SP +KVEKAH+ADLHCVDWNP DDNLI+TGSADNS+R+FDRRNLTS
Sbjct: 315 DDSCLILWDARTGSSPAVKVEKAHNADLHCVDWNPHDDNLIITGSADNSIRLFDRRNLTS 374

Query: 250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY 309
           NGVGSPI KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY+KVGKK E+  RT   
Sbjct: 375 NGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKVGKKTERATRTPAA 434

Query: 310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV 369
           P GLFFQHAGHRDKVVDFHWNA+DPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP++EV
Sbjct: 435 PPGLFFQHAGHRDKVVDFHWNAADPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEEEV 494

Query: 370 LAELEKFKAHVISCTSKP 387
           LAELEKFK+HVI C +KP
Sbjct: 495 LAELEKFKSHVIECAAKP 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556284|ref|XP_003546456.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/380 (86%), Positives = 356/380 (93%), Gaps = 6/380 (1%)

Query: 7   AMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 66
           A  + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPN
Sbjct: 132 AEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPN 191

Query: 67  RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126
           RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD
Sbjct: 192 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD 251

Query: 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186
                 + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDVTFCPSSAQEFC
Sbjct: 252 ------SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFC 305

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           SVGDDSCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRN
Sbjct: 306 SVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRN 365

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
           LT+NGVGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++
Sbjct: 366 LTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKS 425

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366
            + P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+
Sbjct: 426 ISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPE 485

Query: 367 DEVLAELEKFKAHVISCTSK 386
           DEVLAELEKFK+HV++C SK
Sbjct: 486 DEVLAELEKFKSHVVACASK 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530364|ref|XP_003533752.1| PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 1 [Glycine max]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/380 (86%), Positives = 355/380 (93%), Gaps = 6/380 (1%)

Query: 7   AMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 66
           A  + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPN
Sbjct: 137 AEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPN 196

Query: 67  RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126
           RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD
Sbjct: 197 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD 256

Query: 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186
                 + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDV FCPSSAQEFC
Sbjct: 257 ------SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFC 310

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           SVGDDSCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRN
Sbjct: 311 SVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRN 370

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
           LT+NGVGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++
Sbjct: 371 LTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKS 430

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366
            + P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+
Sbjct: 431 ISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPE 490

Query: 367 DEVLAELEKFKAHVISCTSK 386
           DEVLAELEKFK+HV++C SK
Sbjct: 491 DEVLAELEKFKSHVVACASK 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530366|ref|XP_003533753.1| PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 2 [Glycine max]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/375 (86%), Positives = 353/375 (94%), Gaps = 6/375 (1%)

Query: 12  QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
           +FNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPNRHAVL
Sbjct: 133 RFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVL 192

Query: 72  GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
           GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD     
Sbjct: 193 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD----- 247

Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
            + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDV FCPSSAQEFCSVGDD
Sbjct: 248 -SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDD 306

Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
           SCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRNLT+NG
Sbjct: 307 SCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNG 366

Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311
           VGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P 
Sbjct: 367 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 426

Query: 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA 371
           GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLA
Sbjct: 427 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLA 486

Query: 372 ELEKFKAHVISCTSK 386
           ELEKFK+HV++C SK
Sbjct: 487 ELEKFKSHVVACASK 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346229125|gb|AEO21436.1| FVE protein [Glycine max]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/380 (85%), Positives = 354/380 (93%), Gaps = 6/380 (1%)

Query: 7   AMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 66
           A  + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPN
Sbjct: 132 AEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPN 191

Query: 67  RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126
           RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD
Sbjct: 192 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD 251

Query: 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186
                 + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDVTFCPSSAQEFC
Sbjct: 252 ------SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFC 305

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           SVGDDSC ILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILT SADNSVRMFDRRN
Sbjct: 306 SVGDDSCPILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTESADNSVRMFDRRN 365

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
           LT+NGVGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++
Sbjct: 366 LTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKS 425

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366
            + P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+
Sbjct: 426 ISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPE 485

Query: 367 DEVLAELEKFKAHVISCTSK 386
           DEVLAELEKFK+HV++C SK
Sbjct: 486 DEVLAELEKFKSHVVACASK 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|61611729|gb|AAX47182.1| FVE [Pisum sativum]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/380 (85%), Positives = 351/380 (92%), Gaps = 7/380 (1%)

Query: 7   AMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 66
           A  + QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVE+QPN
Sbjct: 140 AEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPN 199

Query: 67  RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 126
           RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DH+TS+ATD
Sbjct: 200 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSAATD 259

Query: 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186
                   S GSIIK + K G+GNDK  D PSVGPRGIY+GH+DTVEDV FCPSSAQEFC
Sbjct: 260 -------KSGGSIIKPNSKSGEGNDKTVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQEFC 312

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           SVGDDSCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVR+FDRRN
Sbjct: 313 SVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRLFDRRN 372

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
           LTSNGVGSPI+KFE H AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  +T
Sbjct: 373 LTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKT 432

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 366
            N P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDL+YRP+
Sbjct: 433 INSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPE 492

Query: 367 DEVLAELEKFKAHVISCTSK 386
           DEVLAELEKFK+HV++C +K
Sbjct: 493 DEVLAELEKFKSHVVACAAK 512

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2050372	507	FVE [Arabidopsis thaliana (tax	0.937	0.715	0.792	9.3e-162
TAIR|locus:2134408	487	NFC5 "AT4G29730" [Arabidopsis	0.935	0.743	0.757	2.4e-154
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.511	0.465	0.356	2.3e-46
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.511	0.465	0.356	2.3e-46
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.511	0.465	0.356	2.3e-46
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.511	0.465	0.356	2.3e-46
UNIPROTKB|I3LKT8	390	RBBP4 "Uncharacterized protein	0.511	0.507	0.356	2.3e-46
UNIPROTKB|Q5RF92	425	RBBP4 "Histone-binding protein	0.511	0.465	0.356	2.3e-46
MGI|MGI:1194912	425	Rbbp4 "retinoblastoma binding	0.511	0.465	0.356	2.3e-46
RGD|1593768	425	Rbbp4 "retinoblastoma binding	0.511	0.465	0.356	2.3e-46

TAIR|locus:2050372 FVE [Arabidopsis thaliana (taxid:3702)]

 Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
 Identities = 298/376 (79%), Positives = 326/376 (86%)

Query:    12 QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
             QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVE QPNRHAVL
Sbjct:   145 QFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRHAVL 204

Query:    72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
             GA NSRPDLILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+  TD   +K
Sbjct:   205 GAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTD---SK 261

Query:   132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
             S   SGSIIKQ+   G+G DK  + P+VGPRG+Y+GHEDTVEDV F P+SAQEFCSVGDD
Sbjct:   262 S---SGSIIKQT---GEGTDKN-ESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDD 314

Query:   192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
             SCLILWDAR GT+PV KVEKAHDADLHCVDWNP DDNLILTGSADN+VR+FDRR LT+NG
Sbjct:   315 SCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANG 374

Query:   252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311
             VGSPI KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK ++  ++   PA
Sbjct:   375 VGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKS---PA 431

Query:   312 GLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQDEVLA 371
             GLFFQHAGHRDKVVDFHWNASDPW                 LQIWRMSDLIYRP++EV+A
Sbjct:   432 GLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEVVA 491

Query:   372 ELEKFKAHVISCTSKP 387
             ELEKFK+HV++C SKP
Sbjct:   492 ELEKFKSHVMTCASKP 507

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0010224 "response to UV-B" evidence=IEP

GO:0046872 "metal ion binding" evidence=IDA

TAIR|locus:2134408 NFC5 "AT4G29730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
 Identities = 284/375 (75%), Positives = 317/375 (84%)

Query:    12 QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 71
             Q NE+A SPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPD+LIW+ E QP+R+AVL
Sbjct:   125 QLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVL 184

Query:    72 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 131
             GA +SRPDL+L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+IQDHIT + +D   +K
Sbjct:   185 GAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSD---SK 241

Query:   132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
             S GSS    KQ+   G+G+DK   GPSVGPRGIYNGH+DTVEDV FCPSSAQEFCSVGDD
Sbjct:   242 SPGSS---FKQT---GEGSDKTG-GPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDD 294

Query:   192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
             SCL+LWDAR GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+FDRRNLTSNG
Sbjct:   295 SCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNG 354

Query:   252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311
             VGSP+ KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E   R T  P 
Sbjct:   355 VGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE---RATKTPD 411

Query:   312 GLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQDEVLA 371
             GLFFQHAGHRDKVVDFHW+  +PW                 LQIWRMSDLIYRP+DEVL 
Sbjct:   412 GLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLT 471

Query:   372 ELEKFKAHVISCTSK 386
             ELEKFK+HV +CTSK
Sbjct:   472 ELEKFKSHVFTCTSK 486

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

UNIPROTKB|I3LKT8 RBBP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   178 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 236

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   237 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 291

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   292 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 349

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   350 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 378

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q5RF92 RBBP4 "Histone-binding protein RBBP4" [Pongo abelii (taxid:9601)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=ISO;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016581 "NuRD complex" evidence=ISO;IDA

GO:0016589 "NURF complex" evidence=ISO

GO:0031497 "chromatin assembly" evidence=ISO

GO:0033186 "CAF-1 complex" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

RGD|1593768 Rbbp4 "retinoblastoma binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 344 (126.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 212
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 331
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   332 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISO

GO:0016581 "NuRD complex" evidence=IEA;ISO

GO:0016589 "NURF complex" evidence=IEA;ISO

GO:0031497 "chromatin assembly" evidence=IEA;ISO

GO:0033186 "CAF-1 complex" evidence=IEA;ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22607	MSI4_ARATH	No assigned EC number	0.8215	0.9509	0.7258	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFC905 nucleosome/chromatin assembly factor group (502 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  110 bits (277), Expect = 9e-28
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 30  HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89
           H G V  +      T + +  +D   + +WD+E                   LTGH    
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDK-TIRLWDLETGECVR------------TLTGHTS-Y 95

Query: 90  EFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPK 145
             ++A  P    + S  +DK++ +W ++           TD   + +    G+ +  S +
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155

Query: 146 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 205
             DG  K  D  +        GH   V  V F P   ++  S   D  + LWD   G   
Sbjct: 156 --DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK-- 210

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
            +   + H+  ++ V ++P D  L+ +GS D ++R++D R       G  +    GH+ +
Sbjct: 211 CLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT------GECVQTLSGHTNS 263

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           V  + WSPD   +  S + DG + IWD
Sbjct: 264 VTSLAWSPDGKRLA-SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (254), Expect = 2e-24
 Identities = 74/337 (21%), Positives = 116/337 (34%), Gaps = 64/337 (18%)

Query: 30  HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89
           H G V  +   P    +     D   + +WD+E                   L GH    
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDG-TIKVWDLE------------TGELLRTLKGHTGPV 54

Query: 90  EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI--IKQSPKP- 146
               A      Y+ SG  DK++ LW ++       T        G +  +  +  SP   
Sbjct: 55  RDVAA-SADGTYLASGSSDKTIRLWDLE-------TGECVRTLTGHTSYVSSVAFSPDGR 106

Query: 147 ---GDGNDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 200
                  DK     D  +        GH D V  V F P       S   D  + LWD R
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLR 165

Query: 201 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260
             T   +     H  +++ V ++P D   +L+ S+D +++++D         G  +    
Sbjct: 166 --TGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLR 216

Query: 261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 320
           GH   V  V +SPD   +  S +EDG + +WD    G+ V+                 GH
Sbjct: 217 GHENGVNSVAFSPDGYLLA-SGSEDGTIRVWDLRT-GECVQTLS--------------GH 260

Query: 321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 357
            + V    W+      + S S D        T++IW 
Sbjct: 261 TNSVTSLAWSPDGKR-LASGSADG-------TIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.8 bits (213), Expect = 7e-19
 Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 52/211 (24%)

Query: 82  LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 141
           L GH       +A  P    + +G  D ++ +W ++                   G +++
Sbjct: 5   LKGHTGGV-TCVAFSPDGKLLATGSGDGTIKVWDLET------------------GELLR 45

Query: 142 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 201
                                    GH   V DV           S   D  + LWD  +
Sbjct: 46  T----------------------LKGHTGPVRDVAASADG-TYLASGSSDKTIRLWD--L 80

Query: 202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261
            T   ++    H + +  V ++P D  ++ + S D +++++D         G  +    G
Sbjct: 81  ETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET------GKCLTTLRG 133

Query: 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           H+  V  V +SPD + V  SS  DG + +WD
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQ-DGTIKLWD 163

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 73.6 bits (179), Expect = 3e-14
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
             +  GHED++  + F P   +   S   D  + LWD   G   +  +E  HD+ +  + 
Sbjct: 58  SLLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 222 WNPLDDNLILT--GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
            +  D N IL    S D +V+++D      +  G  I   EGHS +V  + +SPD   + 
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWD-----LSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 339
             S+ DG + +WD       +  G   +          AGH D V    ++      + S
Sbjct: 172 SGSSLDGTIKLWD-------LRTGKPLSTL--------AGHTDPVSSLAFSPDGGLLIAS 216

Query: 340 VSDDCDSTGGGGTLQIWRMSD 360
            S D       GT+++W +S 
Sbjct: 217 GSSD-------GTIRLWDLST 230

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.7 bits (174), Expect = 1e-13
 Identities = 72/361 (19%), Positives = 118/361 (32%), Gaps = 69/361 (19%)

Query: 18  RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 77
            +P         H   V  +   P    + +  +    + +WD+               +
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR------------TGK 189

Query: 78  PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--------------DHITSS 123
           P   L GH D              + SG  D ++ LW +                 ++S 
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 183
           + D +   S  S G+I           D  +    +      +GH  +V  V F P    
Sbjct: 250 SPDGSLLASGSSDGTIR--------LWDLRSSSSLLR---TLSGHSSSVLSVAFSPDGKL 298

Query: 184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
              S   D  + LWD   G        K H+  +  + ++P    L+  GS D ++R++D
Sbjct: 299 LA-SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 244 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 303
            R       G P+   EGHS  VL V +SPD   V  S + DG + +WD           
Sbjct: 358 LRT------GKPLKTLEGHS-NVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLR--- 406

Query: 304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 363
                            R   +DF     D  ++ S S D        T+++W +   + 
Sbjct: 407 ----------NLDGHTSRVTSLDFS---PDGKSLASGSSD-------NTIRLWDLKTSLK 446

Query: 364 R 364
            
Sbjct: 447 S 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 31/150 (20%)

Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266
            +  K H   + CV ++P D  L+ TGS D +++++D         G  +   +GH+  V
Sbjct: 2   RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLET------GELLRTLKGHTGPV 54

Query: 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326
             V  S D + +  S + D  + +WD E  G+ V                  GH   V  
Sbjct: 55  RDVAASADGTYLA-SGSSDKTIRLWDLET-GECV--------------RTLTGHTSYVSS 98

Query: 327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356
             ++      + S S D        T+++W
Sbjct: 99  VAFSPDGRI-LSSSSRD-------KTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 30/129 (23%)

Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318
            +GH+  V CV +SPD   +  + + DG + +WD E            T           
Sbjct: 5   LKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLE------TGELLRTLK--------- 48

Query: 319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 378
           GH   V D   +A   + + S S D        T+++W +         E +  L    +
Sbjct: 49  GHTGPVRDVAASADGTY-LASGSSD-------KTIRLWDLET------GECVRTLTGHTS 94

Query: 379 HVISCTSKP 387
           +V S    P
Sbjct: 95  YVSSVAFSP 103

Length = 289

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 220 VDWNPLDDNLILTGSADNSVRMFD--RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
           V +NP D   + T S D ++  +      LT N +  PI   +GH+  V  V + P   +
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-ISDPIVHLQGHTKKVGIVSFHPSAMN 139

Query: 278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNA 331
           V  S+  D ++N+WD E+ GK VE     ++    L +   G       +DK +    N 
Sbjct: 140 VLASAGADMVVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL----NI 194

Query: 332 SDPWTVVSVSDDCDSTGGGGTLQIW-RMSDLI 362
            DP     VS             +W +  DLI
Sbjct: 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 4e-06
 Identities = 50/265 (18%), Positives = 98/265 (36%), Gaps = 40/265 (15%)

Query: 30  HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL--------GATNSRPDLI 81
           H   V+ +   P    ++A+ +    + +WD+       + L         + +    L+
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLL 256

Query: 82  LTGHQDNAE----------------------FALAMCPTEPYVLSGGKDKSVVLWSIQDH 119
            +G  D                          ++A  P    + SG  D +V LW ++  
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 120 -----ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 174
                +T    +   +  + S    +  S    DG  +  D  +  P     GH   V  
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLS 375

Query: 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 234
           V+F P   +   S   D  + LWD   G+  +++    H + +  +D++P D   + +GS
Sbjct: 376 VSFSPDG-RVVSSGSTDGTVRLWDLSTGS--LLRNLDGHTSRVTSLDFSP-DGKSLASGS 431

Query: 235 ADNSVRMFDRRNLTSNGVGSPINKF 259
           +DN++R++D +    +   SP  K 
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDGKV 456

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           G  +   +GH+  V  V +SPD  ++  S ++DG + +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           G  +   +GH+  V  V +SPD      S ++DG + +WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 205 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR--NLTSNGVGSPINKFEGH 262
           PVIK+ K H + +  + +NP    ++ +GS D ++R+++    + +   +  P    +GH
Sbjct: 66  PVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124

Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294
              +  + W+P    +  SS  D  +NIWD E
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 226
           GH   V  V+F PS+     S G D  + +WD   G +  ++V K H   +  ++WN LD
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWN-LD 179

Query: 227 DNLILTGSADNSVRMFDRRNLT 248
            +L+ T S D  + + D R+ T
Sbjct: 180 GSLLCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
           +++  K H   +  V ++P D NL+ +GS D +VR++D
Sbjct: 3   LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
           +  ++K  K H   +  V ++P D   + +GS D +++++D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD 226
           HE  V  + +  +      S  DD  + LW    G S   IK +    A++ CV +    
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK----ANICCVQFPSES 629

Query: 227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286
              +  GSAD+ V  +D RN        P+    GHS  V  V++    SS   SS+ D 
Sbjct: 630 GRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDN 682

Query: 287 LLNIWDYEKVGKKVEQGP 304
            L +WD       + + P
Sbjct: 683 TLKLWDLSMSISGINETP 700

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.98
PTZ00420	568	coronin; Provisional	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.93
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG4227	609	consensus WD40 repeat protein [General function pr	99.92
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0649	325	consensus WD40 repeat protein [General function pr	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG1334	559	consensus WD40 repeat protein [General function pr	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.8
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.78
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.74
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.74
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.72
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK00178	430	tolB translocation protein TolB; Provisional	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.67
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.66
PRK04792	448	tolB translocation protein TolB; Provisional	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.61
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.59
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.59
PRK01029	428	tolB translocation protein TolB; Provisional	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.57
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.51
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.51
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.49
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.45
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.45
KOG2314	698	consensus Translation initiation factor 3, subunit	99.44
PRK01029	428	tolB translocation protein TolB; Provisional	99.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.39
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.38
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.37
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.37
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
COG4946	668	Uncharacterized protein related to the periplasmic	99.29
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.29
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.28
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
PRK04043	419	tolB translocation protein TolB; Provisional	99.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.22
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.15
KOG2695	425	consensus WD40 repeat protein [General function pr	99.14
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.13
KOG2315	566	consensus Predicted translation initiation factor	99.13
COG4946	668	Uncharacterized protein related to the periplasmic	99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG2695	425	consensus WD40 repeat protein [General function pr	99.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.02
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.01
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.01
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.97
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.96
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.95
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.93
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.93
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.84
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.81
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.77
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.75
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.75
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.61
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.6
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.54
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.44
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.31
KOG3621	726	consensus WD40 repeat-containing protein [General	98.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.28
KOG2395	644	consensus Protein involved in vacuole import and d	98.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.04
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.03
PRK02888	635	nitrous-oxide reductase; Validated	98.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.92
KOG3621	726	consensus WD40 repeat-containing protein [General	97.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.84
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.84
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.76
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.71
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.66
KOG2444	238	consensus WD40 repeat protein [General function pr	97.66
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.6
COG3391	381	Uncharacterized conserved protein [Function unknow	97.58
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.57
COG3391	381	Uncharacterized conserved protein [Function unknow	97.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.5
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.38
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.34
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.3
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.28
KOG2395	644	consensus Protein involved in vacuole import and d	97.24
KOG2444	238	consensus WD40 repeat protein [General function pr	97.22
PRK13616	591	lipoprotein LpqB; Provisional	97.21
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.13
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.12
PHA02713	557	hypothetical protein; Provisional	97.08
PHA02713	557	hypothetical protein; Provisional	97.08
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.92
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.8
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.7
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.61
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.54
PRK13616	591	lipoprotein LpqB; Provisional	96.54
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.41
PHA03098	534	kelch-like protein; Provisional	96.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.36
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.35
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.29
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.28
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.24
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.12
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.1
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.09
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.01
COG5276	370	Uncharacterized conserved protein [Function unknow	95.8
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.78
COG4590	733	ABC-type uncharacterized transport system, permeas	95.73
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.72
KOG2247	615	consensus WD40 repeat-containing protein [General	95.71
PHA02790	480	Kelch-like protein; Provisional	95.63
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.47
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.4
PHA03098	534	kelch-like protein; Provisional	95.36
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.32
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.27
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.98
COG4590	733	ABC-type uncharacterized transport system, permeas	94.88
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.85
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.82
COG5167	776	VID27 Protein involved in vacuole import and degra	94.75
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.52
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.52
PRK10115	686	protease 2; Provisional	94.51
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.45
COG5167	776	VID27 Protein involved in vacuole import and degra	94.4
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.31
PHA02790	480	Kelch-like protein; Provisional	93.59
PRK10115	686	protease 2; Provisional	93.49
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.21
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.72
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.39
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.34
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.29
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.2
KOG2247	615	consensus WD40 repeat-containing protein [General	92.01
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.91
PLN02193	470	nitrile-specifier protein	91.89
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.73
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.58
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.58
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.37
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.25
PRK13684	334	Ycf48-like protein; Provisional	91.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.11
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.84
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.82
PLN02153	341	epithiospecifier protein	90.27
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.23
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.73
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	89.68
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.3
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.99
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.67
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.18
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.99
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.86
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.73
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.54
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.36
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.07
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.84
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.46
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.32
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.29
PLN02193	470	nitrile-specifier protein	84.64
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.68
PLN02153	341	epithiospecifier protein	82.94
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	82.67
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.46
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.03
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	81.84
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	80.48
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	80.34
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	80.07

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-53  Score=332.17  Aligned_cols=311  Identities=21%  Similarity=0.302  Sum_probs=268.4

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.||.++|.|++|+| ++..||||+.|.++++||+.+.            .+..+.++|.. .|.|++|+|||+.||
T Consensus       108 ssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~-WVlcvawsPDgk~iA  173 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKN-WVLCVAWSPDGKKIA  173 (480)
T ss_pred             ccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCC------------CcceeecCCcc-EEEEEEECCCcchhh
Confidence            344568999999999999 9999999999999999999999            89999999998 899999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccC--------CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKS--------AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      +|+.||+|++||.+++......-......        ...............++.+.+|+......+..+.+|+.+|+|+
T Consensus       174 SG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  174 SGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             ccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence            99999999999998876544322221110        0111112255566778999999999999999999999999999


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec-----------C--------------------
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-----------P--------------------  224 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~-----------~--------------------  224 (387)
                      .|-.+|  ++++|+.|++|++|+...+.  +.+.+.+|...|+.++.+           |                    
T Consensus       254 rwGG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  254 RWGGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             EEcCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            998776  89999999999999999887  788899999999999876           2                    


Q ss_pred             ----CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee
Q 016547          225 ----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  300 (387)
Q Consensus       225 ----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  300 (387)
                          ..+..|++|++|.++.+|+-...     .+++....+|..-|+.+.||||+++ +|+++.|..|++||.+++    
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkLW~g~tG----  399 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKLWDGRTG----  399 (480)
T ss_pred             HhhccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCccE-EEEeecccceeeeeCCCc----
Confidence                02335999999999999998763     5688899999999999999999996 689999999999999996    


Q ss_pred             ccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceE
Q 016547          301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  380 (387)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v  380 (387)
                                 +.+..+.+|-..|+.++|+.|.+.|+        +|+.|.++++|+++      +.++...+.+|.+.|
T Consensus       400 -----------k~lasfRGHv~~VYqvawsaDsRLlV--------S~SkDsTLKvw~V~------tkKl~~DLpGh~DEV  454 (480)
T KOG0271|consen  400 -----------KFLASFRGHVAAVYQVAWSADSRLLV--------SGSKDSTLKVWDVR------TKKLKQDLPGHADEV  454 (480)
T ss_pred             -----------chhhhhhhccceeEEEEeccCccEEE--------EcCCCceEEEEEee------eeeecccCCCCCceE
Confidence                       45788999999999999999877655        67777999999999      899999999999999


Q ss_pred             EEeeecC
Q 016547          381 ISCTSKP  387 (387)
Q Consensus       381 ~~~~f~P  387 (387)
                      .+++|+|
T Consensus       455 f~vDwsp  461 (480)
T KOG0271|consen  455 FAVDWSP  461 (480)
T ss_pred             EEEEecC
Confidence            9999998

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-49  Score=314.77  Aligned_cols=267  Identities=23%  Similarity=0.373  Sum_probs=244.1

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEEEe
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSG  105 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~s~  105 (387)
                      ++-..+|..+.|+. +++.||||+.+|.+++|+..+.            ..+..+.+|.+ .|.++.|+|.  +..|+||
T Consensus       172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~-~v~~~~fhP~~~~~~lat~  237 (459)
T KOG0272|consen  172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTS-RVGAAVFHPVDSDLNLATA  237 (459)
T ss_pred             ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCc------------ceeEEEecccc-ceeeEEEccCCCccceeee
Confidence            46778999999999 9999999999999999999998            78899999998 6889999997  5689999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.||++++|++.+                                        ..++..+.+|...|..++|+|+| ++|
T Consensus       238 s~Dgtvklw~~~~----------------------------------------e~~l~~l~gH~~RVs~VafHPsG-~~L  276 (459)
T KOG0272|consen  238 SADGTVKLWKLSQ----------------------------------------ETPLQDLEGHLARVSRVAFHPSG-KFL  276 (459)
T ss_pred             ccCCceeeeccCC----------------------------------------CcchhhhhcchhhheeeeecCCC-cee
Confidence            9999999999974                                        24567889999999999999999 899


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++++.|.+-++||++++.  ......+|...|.+++|.| +|.++++|+.|..-+|||+|+      +.++..+.+|..+
T Consensus       277 ~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k~  347 (459)
T KOG0272|consen  277 GTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIKE  347 (459)
T ss_pred             eecccccchhhcccccch--hhHhhcccccccceeEecC-CCceeeccCccchhheeeccc------CcEEEEecccccc
Confidence            999999999999999988  4666779999999999999 999999999999999999999      9999999999999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |.+++|+|+|.. +|+|+.|++++|||++..               ..+....+|...|+.+.|+|...++++       
T Consensus       348 I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r---------------~~ly~ipAH~nlVS~Vk~~p~~g~fL~-------  404 (459)
T KOG0272|consen  348 ILSVAFSPNGYH-LATGSSDNTCKVWDLRMR---------------SELYTIPAHSNLVSQVKYSPQEGYFLV-------  404 (459)
T ss_pred             eeeEeECCCceE-EeecCCCCcEEEeeeccc---------------ccceecccccchhhheEecccCCeEEE-------
Confidence            999999999975 789999999999999985               346778999999999999997666666       


Q ss_pred             CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |++.|++++||.-.      +.++++.+.||.+.|.+|+.+|
T Consensus       405 TasyD~t~kiWs~~------~~~~~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  405 TASYDNTVKIWSTR------TWSPLKSLAGHEGKVISLDISP  440 (459)
T ss_pred             EcccCcceeeecCC------CcccchhhcCCccceEEEEecc
Confidence            55566999999999      8999999999999999999876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-48  Score=306.11  Aligned_cols=248  Identities=23%  Similarity=0.361  Sum_probs=228.9

Q ss_pred             eeeeecCCCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           24 KHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ..++.||.+.|.++.|+|. ++.-+|||+.||+|++|++++.            .++..+.+|.. .|..++|+|+|++|
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------~~l~~l~gH~~-RVs~VafHPsG~~L  276 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------TPLQDLEGHLA-RVSRVAFHPSGKFL  276 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------cchhhhhcchh-hheeeeecCCCcee
Confidence            4567799999999999997 4779999999999999999998            78889999997 78999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      +|++.|.+-++||+.++..                                        +....+|+..|.+++|.+|| 
T Consensus       277 ~TasfD~tWRlWD~~tk~E----------------------------------------lL~QEGHs~~v~~iaf~~DG-  315 (459)
T KOG0272|consen  277 GTASFDSTWRLWDLETKSE----------------------------------------LLLQEGHSKGVFSIAFQPDG-  315 (459)
T ss_pred             eecccccchhhcccccchh----------------------------------------hHhhcccccccceeEecCCC-
Confidence            9999999999999987543                                        25567999999999999999 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .++++|+.|..-+|||++++.  ++..+.+|..+|.+|+|+| +|..||+|+.|++++|||++.      ...+..+.+|
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipAH  386 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM------RSELYTIPAH  386 (459)
T ss_pred             ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecc------cccceecccc
Confidence            899999999999999999999  6888899999999999999 999999999999999999998      7889999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ..-|+.+.|+|...++|++++.|++++||..++.               .++..+.||++.|.+++.++++++++     
T Consensus       387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~-----  446 (459)
T KOG0272|consen  387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIA-----  446 (459)
T ss_pred             cchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEE-----
Confidence            9999999999966667889999999999999886               56788899999999999999999888     


Q ss_pred             CCCCCCCCceEEEEe
Q 016547          343 DCDSTGGGGTLQIWR  357 (387)
Q Consensus       343 d~~tg~~dg~i~iw~  357 (387)
                         |++.|.++++|.
T Consensus       447 ---t~s~DRT~KLW~  458 (459)
T KOG0272|consen  447 ---TSSFDRTIKLWR  458 (459)
T ss_pred             ---EeccCceeeecc
Confidence               888889999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.2e-45  Score=274.80  Aligned_cols=281  Identities=17%  Similarity=0.311  Sum_probs=245.0

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      +.....+.||.+.|.++.|++ +.+.+++++.||.+.|||.-+.            ...+.++-... .|..++|+|.|+
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~Tt------------nK~haipl~s~-WVMtCA~sPSg~  110 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTT------------NKVHAIPLPSS-WVMTCAYSPSGN  110 (343)
T ss_pred             eeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccc------------cceeEEecCce-eEEEEEECCCCC
Confidence            334567779999999999999 9999999999999999999888            55666666665 799999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      ++|.|+-|+...||++.+.....                                  .....+.+.+|++-+.|+.|.+|
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~~g----------------------------------~~~v~r~l~gHtgylScC~f~dD  156 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDAEG----------------------------------NVRVSRELAGHTGYLSCCRFLDD  156 (343)
T ss_pred             eEEecCcCceeEEEecccccccc----------------------------------cceeeeeecCccceeEEEEEcCC
Confidence            99999999999999998532111                                  11223668899999999999986


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      +  .+++++.|.+..+||+++++  ....+.+|.+.|.+++++|.+++.+++|+.|+..++||+|.      +.++++|.
T Consensus       157 ~--~ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~------~~c~qtF~  226 (343)
T KOG0286|consen  157 N--HILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS------GQCVQTFE  226 (343)
T ss_pred             C--ceEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC------cceeEeec
Confidence            5  79999999999999999998  68889999999999999998899999999999999999999      99999999


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      +|+..|+++.|.|+|.- |++|++|++.++||++...+.             .++....-..+|++++|+..|+.|+   
T Consensus       227 ghesDINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~-------------a~ys~~~~~~gitSv~FS~SGRlLf---  289 (343)
T KOG0286|consen  227 GHESDINSVRFFPSGDA-FATGSDDATCRLYDLRADQEL-------------AVYSHDSIICGITSVAFSKSGRLLF---  289 (343)
T ss_pred             ccccccceEEEccCCCe-eeecCCCceeEEEeecCCcEE-------------eeeccCcccCCceeEEEcccccEEE---
Confidence            99999999999999985 789999999999999984332             2333334456899999999999888   


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                           +|..|.++.+||.-      .++.+..+.+|++.|.++..+|
T Consensus       290 -----agy~d~~c~vWDtl------k~e~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  290 -----AGYDDFTCNVWDTL------KGERVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             -----eeecCCceeEeecc------ccceEEEeeccCCeeEEEEECC
Confidence                 67778999999998      7899999999999999999887

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-46  Score=292.70  Aligned_cols=288  Identities=26%  Similarity=0.355  Sum_probs=244.0

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CC
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TE   99 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~   99 (387)
                      ....+|..-|.|++|+| ++..||+|+.||+|++||.++++           .....+.+|.. .|++++|.|     ..
T Consensus       151 ~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~-----------~~g~~l~gH~K-~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQ-----------QIGRALRGHKK-WITALAWEPLHLVPPC  217 (480)
T ss_pred             eeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCC-----------cccccccCccc-ceeEEeecccccCCCc
Confidence            45668999999999999 99999999999999999999885           45567999998 799999976     56


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCC-CCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSA-GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      ++|++++.||+|+|||+..+.+............ -.-+..-..-.+..+..+.+|+...+.....+++|...|+.++.+
T Consensus       218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals  297 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS  297 (480)
T ss_pred             cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence            7999999999999999988765544333222110 001111122345567889999999999999999999999999987


Q ss_pred             c-----------CC------------------------CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec
Q 016547          179 P-----------SS------------------------AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  223 (387)
Q Consensus       179 ~-----------~~------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  223 (387)
                      .           .+                        +..+++|+.|.++.+|+....++ .+....+|..-|+.+.|+
T Consensus       298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-pi~rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-PITRMTGHQALVNHVSFS  376 (480)
T ss_pred             chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-chhhhhchhhheeeEEEC
Confidence            2           22                        23599999999999999877664 456677999999999999


Q ss_pred             CCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547          224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  303 (387)
Q Consensus       224 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  303 (387)
                      | +++++|+++-|..|++||.++      ++.+.+|++|-..|+.++|+.|.+ ||++|+.|.++++||+++.       
T Consensus       377 P-d~r~IASaSFDkSVkLW~g~t------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk-------  441 (480)
T KOG0271|consen  377 P-DGRYIASASFDKSVKLWDGRT------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK-------  441 (480)
T ss_pred             C-CccEEEEeecccceeeeeCCC------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee-------
Confidence            9 999999999999999999999      999999999999999999999998 6789999999999999985       


Q ss_pred             CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547          304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                              ++...+.+|.+.|.++.|+|||..++        +||.|..+++|.
T Consensus       442 --------Kl~~DLpGh~DEVf~vDwspDG~rV~--------sggkdkv~~lw~  479 (480)
T KOG0271|consen  442 --------KLKQDLPGHADEVFAVDWSPDGQRVA--------SGGKDKVLRLWR  479 (480)
T ss_pred             --------eecccCCCCCceEEEEEecCCCceee--------cCCCceEEEeec
Confidence                    45677899999999999999999988        999999999995

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-43  Score=283.62  Aligned_cols=300  Identities=42%  Similarity=0.784  Sum_probs=256.8

Q ss_pred             cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      ..++..+.+.|.+.|+.+++.|++..++|+++..+.|.|||..+........+  ...+...+.+|+.. =++++|++..
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~e-g~glsWn~~~  189 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKE-GYGLSWNRQQ  189 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCCCceEEEeeccc-cccccccccc
Confidence            36777788899999999999999999999999999999999987755443322  44677899999983 4799999864


Q ss_pred             -CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          100 -PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       100 -~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                       -+|++++.|++|++||+......                                 .....+...+.+|...|..++|+
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~~~~p~~~~~~h~~~VeDV~~h  236 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESKE---------------------------------DKVVDPKTIFSGHEDVVEDVAWH  236 (422)
T ss_pred             ceeEeeccCCCcEEEEeccccccC---------------------------------CccccceEEeecCCcceehhhcc
Confidence             47999999999999999854221                                 12334567889999999999999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      +....+|++++.|+.+.|||+|+...+......+|.+.|+|++|+|.++..||+|+.|++|.+||+|++     .+++.+
T Consensus       237 ~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-----~~~lh~  311 (422)
T KOG0264|consen  237 PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL-----NKPLHT  311 (422)
T ss_pred             ccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc-----ccCcee
Confidence            998889999999999999999964444667788999999999999999999999999999999999997     679999


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +.+|+..|.++.|+|....+||+++.|+.+.|||+...++.+. .......|+.+++...||...|..+.|+|+.+++++
T Consensus       312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~  390 (422)
T KOG0264|consen  312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA  390 (422)
T ss_pred             ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence            9999999999999999999999999999999999998776654 333445778899999999999999999999999999


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccch
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDE  368 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~  368 (387)
                      ++++|       +.+.||++.+.+++....
T Consensus       391 SvaeD-------N~LqIW~~s~~i~~~e~~  413 (422)
T KOG0264|consen  391 SVAED-------NILQIWQMAENIYNPEDP  413 (422)
T ss_pred             EecCC-------ceEEEeeccccccCcccc
Confidence            77766       999999999776655443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.4e-44  Score=303.79  Aligned_cols=270  Identities=25%  Similarity=0.465  Sum_probs=234.1

Q ss_pred             ccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCc--------c-----------cccCCCCCC
Q 016547           17 ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------H-----------AVLGATNSR   77 (387)
Q Consensus        17 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--------~-----------~~~~~~~~~   77 (387)
                      ...|.+...+...-...++|..|++ +..+||.|-.|..|++|.+...+..        .           .........
T Consensus       364 ~~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~  442 (707)
T KOG0263|consen  364 NSLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG  442 (707)
T ss_pred             CCCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence            3455565566655677899999999 8889999999999999999853211        0           112222334


Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      ....+.||++ +|..+.|+|+.++|++||.|+++|+|.+.+..                                     
T Consensus       443 ~~~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t~s-------------------------------------  484 (707)
T KOG0263|consen  443 TSRTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------------------------------------  484 (707)
T ss_pred             eeEEeecCCC-ceeeeeecccccceeeccCCcceeeeecccce-------------------------------------
Confidence            5567999998 89999999999999999999999999998643                                     


Q ss_pred             CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                         .+..+++|..+|+++.|+|.| .+|+|++.|++.++|......  ..+.+.+|.+.|.|+.|+| +.+++++||.|.
T Consensus       485 ---~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~  557 (707)
T KOG0263|consen  485 ---CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDR  557 (707)
T ss_pred             ---eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhcccccccceEEECC-cccccccCCCCc
Confidence               346778999999999999999 999999999999999988866  6788999999999999999 999999999999


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      +||+||..+      +..++.|.+|.++|.+++|||+|++ ||+|+.||.|.+||+..+               .++..+
T Consensus       558 tVRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~---------------~~v~~l  615 (707)
T KOG0263|consen  558 TVRLWDVST------GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANG---------------SLVKQL  615 (707)
T ss_pred             eEEEEEcCC------CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCC---------------cchhhh
Confidence            999999999      9999999999999999999999997 689999999999999986               456778


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                      .+|.+.|.++.|+.+|..|+        +||.|++|++||+....
T Consensus       616 ~~Ht~ti~SlsFS~dg~vLa--------sgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  616 KGHTGTIYSLSFSRDGNVLA--------SGGADNSVRLWDLTKVI  652 (707)
T ss_pred             hcccCceeEEEEecCCCEEE--------ecCCCCeEEEEEchhhc
Confidence            89999999999999999888        88999999999988554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-44  Score=278.27  Aligned_cols=271  Identities=23%  Similarity=0.408  Sum_probs=247.5

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..++.+|..+|+.+-|+| +..++++++.|++|++||..++            +....++||+++ |..+.|+..|++|+
T Consensus       101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~s-v~di~~~a~Gk~l~  166 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETG------------ELERSLRGHTDS-VFDISFDASGKYLA  166 (406)
T ss_pred             hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccch------------hhhhhhhccccc-eeEEEEecCccEEE
Confidence            456678999999999999 8889999999999999999999            678899999994 99999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.|-.+.+||.++.                                       .+++..+.+|...|.++.|-|.| .
T Consensus       167 tcSsDl~~~LWd~~~~---------------------------------------~~c~ks~~gh~h~vS~V~f~P~g-d  206 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTF---------------------------------------FRCIKSLIGHEHGVSSVFFLPLG-D  206 (406)
T ss_pred             ecCCccchhheeHHHH---------------------------------------HHHHHHhcCcccceeeEEEEecC-C
Confidence            9999999999999752                                       33446677899999999999999 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ++++++.|.+|+.|++.++.  ++..+.+|...|..++.+. +|.++++++.|.++++|-+.+      .++...++.|+
T Consensus       207 ~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hE  277 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHE  277 (406)
T ss_pred             eeeecccccceeEEecccce--eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccc
Confidence            99999999999999999998  7899999999999999999 999999999999999999998      88889999999


Q ss_pred             ceEEEEEEcCCC--------------CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547          264 AAVLCVQWSPDK--------------SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  329 (387)
Q Consensus       264 ~~i~~~~~~~~~--------------~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (387)
                      .+|.+++|.|..              ..++++++.|++|++||+..+               .+++++.+|..+|.+++|
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------------~cL~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------------MCLFTLVGHDNWVRGVAF  342 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------------eEEEEEecccceeeeeEE
Confidence            999999997641              135789999999999999986               678999999999999999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      +|.|+|++        ++.+|+++++||++      ..+++.++..|...|++++|+
T Consensus       343 ~p~Gkyi~--------ScaDDktlrvwdl~------~~~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  343 SPGGKYIL--------SCADDKTLRVWDLK------NLQCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             cCCCeEEE--------EEecCCcEEEEEec------cceeeeccCCCcceeEEEecC
Confidence            99999887        66666999999999      799999999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-42  Score=259.05  Aligned_cols=262  Identities=22%  Similarity=0.392  Sum_probs=222.2

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.+|++.|+.++..+.+.+++.+++.|.++.+|++....       .....+.+.+.||.. .|..+..++||++.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-------~~~G~~~r~~~GHsH-~v~dv~~s~dg~~a   78 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-------IKYGVPVRRLTGHSH-FVSDVVLSSDGNFA   78 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc-------cccCceeeeeeccce-EecceEEccCCceE
Confidence            3456678999999999999888999999999999999998762       223367899999987 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|+++++||+.++                                        ++.+.+.+|...|.+++|++++ 
T Consensus        79 lS~swD~~lrlWDl~~g----------------------------------------~~t~~f~GH~~dVlsva~s~dn-  117 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATG----------------------------------------ESTRRFVGHTKDVLSVAFSTDN-  117 (315)
T ss_pred             EeccccceEEEEEecCC----------------------------------------cEEEEEEecCCceEEEEecCCC-
Confidence            99999999999999864                                        3447889999999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCC-CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      ..+++|+.|.+|++|++....   .....  .+...|.|+.|+|.. ..++++++.|++|++||+++      .+....+
T Consensus       118 ~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~  188 (315)
T KOG0279|consen  118 RQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTF  188 (315)
T ss_pred             ceeecCCCcceeeeeeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcc
Confidence            789999999999999987654   22222  237889999999932 78999999999999999999      8888999


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      .+|++.++.+++||||. +.++|+.||.+.+||++....               +.. .+|...|.+++|+|+.-+|.++
T Consensus       189 ~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~---------------lys-l~a~~~v~sl~fspnrywL~~a  251 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN---------------LYS-LEAFDIVNSLCFSPNRYWLCAA  251 (315)
T ss_pred             ccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce---------------eEe-ccCCCeEeeEEecCCceeEeec
Confidence            99999999999999999 678999999999999998633               333 4678899999999976665543


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      .         +..|+|||+.      ++.++.++.
T Consensus       252 t---------~~sIkIwdl~------~~~~v~~l~  271 (315)
T KOG0279|consen  252 T---------ATSIKIWDLE------SKAVVEELK  271 (315)
T ss_pred             c---------CCceEEEecc------chhhhhhcc
Confidence            2         2569999999      677776654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-44  Score=284.48  Aligned_cols=262  Identities=25%  Similarity=0.493  Sum_probs=231.4

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      -+|..+.|.| +|+.|++|+..|.+.+|+....            .....++.|.+ +|.++.|++++.++++|+.+|.|
T Consensus        97 c~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~i  162 (464)
T KOG0284|consen   97 CPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDS-PVRTMKWSHNGTWMISGDKGGMI  162 (464)
T ss_pred             cceeeEEEcC-CCceeEeecccccEEEecCcee------------eHHHHhhhhcc-cceeEEEccCCCEEEEcCCCceE
Confidence            4799999999 9999999999999999998665            55566888987 89999999999999999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCeeEEEecC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      ++|+..-..                                         +..+. .|...|++++|+|++ ..|++++.
T Consensus       163 KyWqpnmnn-----------------------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~Sd  200 (464)
T KOG0284|consen  163 KYWQPNMNN-----------------------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCSD  200 (464)
T ss_pred             Eecccchhh-----------------------------------------hHHhhHhhhhhhheeccCCCC-ceeEEecC
Confidence            999976321                                         13333 455899999999987 78999999


Q ss_pred             CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEE
Q 016547          191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ  270 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (387)
                      ||+|+|||....+  ....+.+|.-.|.+++|+| ...++++|+.|+.|++||.++      +.++.++..|...|..+.
T Consensus       201 Dg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  201 DGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             CCeEEEEeccCCc--hhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEEE
Confidence            9999999998877  4566789999999999999 899999999999999999999      999999999999999999


Q ss_pred             EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547          271 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  350 (387)
Q Consensus       271 ~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d  350 (387)
                      |+|++.+ |++++.|..++++|++..+               .++.+.+|...|++++|+|-...|++       +||.|
T Consensus       272 f~~n~N~-Llt~skD~~~kv~DiR~mk---------------El~~~r~Hkkdv~~~~WhP~~~~lft-------sgg~D  328 (464)
T KOG0284|consen  272 FNPNGNW-LLTGSKDQSCKVFDIRTMK---------------ELFTYRGHKKDVTSLTWHPLNESLFT-------SGGSD  328 (464)
T ss_pred             EcCCCCe-eEEccCCceEEEEehhHhH---------------HHHHhhcchhhheeecccccccccee-------eccCC
Confidence            9999986 5699999999999999642               36677999999999999999988887       77788


Q ss_pred             ceEEEEecCCCcccccchhhhhh-hccCceEEEeeecC
Q 016547          351 GTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  387 (387)
Q Consensus       351 g~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~f~P  387 (387)
                      |.|..|.+.      ..+++.++ .+|...|++++++|
T Consensus       329 gsvvh~~v~------~~~p~~~i~~AHd~~iwsl~~hP  360 (464)
T KOG0284|consen  329 GSVVHWVVG------LEEPLGEIPPAHDGEIWSLAYHP  360 (464)
T ss_pred             CceEEEecc------ccccccCCCcccccceeeeeccc
Confidence            999999999      56666655 47999999999998

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.9e-43  Score=264.35  Aligned_cols=275  Identities=21%  Similarity=0.346  Sum_probs=238.5

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .+.+.+|++.|+.+.|+| ++.+||||+.|..|.+|++....           +-...+++|.+ +|..+.|.+|++.++
T Consensus        40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdc-----------eN~~~lkgHsg-AVM~l~~~~d~s~i~  106 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDC-----------ENFWVLKGHSG-AVMELHGMRDGSHIL  106 (338)
T ss_pred             hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccc-----------cceeeeccccc-eeEeeeeccCCCEEE
Confidence            456779999999999999 99999999999999999977653           34466789998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|++|+.||+++++.                                        +..+++|..-|+.+.-+..|..
T Consensus       107 S~gtDk~v~~wD~~tG~~----------------------------------------~rk~k~h~~~vNs~~p~rrg~~  146 (338)
T KOG0265|consen  107 SCGTDKTVRGWDAETGKR----------------------------------------IRKHKGHTSFVNSLDPSRRGPQ  146 (338)
T ss_pred             EecCCceEEEEeccccee----------------------------------------eehhccccceeeecCccccCCe
Confidence            999999999999987644                                        3677889999999997777888


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ++.+++.|+++++||+++.+  .++.+ .....++++.|.. .+..+.+|+-|+.|++||++.      ......+.+|.
T Consensus       147 lv~SgsdD~t~kl~D~R~k~--~~~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~  216 (338)
T KOG0265|consen  147 LVCSGSDDGTLKLWDIRKKE--AIKTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHA  216 (338)
T ss_pred             EEEecCCCceEEEEeecccc--hhhcc-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeeccc
Confidence            99999999999999999877  34444 3456799999998 899999999999999999998      88999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC----CeeEEEEccCCCeEEEE
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD----KVVDFHWNASDPWTVVS  339 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~s  339 (387)
                      .+|+.+..+|+|.+++ +-+.|.++++||++.....+           .++..+.+|..    ....++|+|++.++-  
T Consensus       217 DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~~p~~-----------R~v~if~g~~hnfeknlL~cswsp~~~~i~--  282 (338)
T KOG0265|consen  217 DTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPFAPSQ-----------RCVKIFQGHIHNFEKNLLKCSWSPNGTKIT--  282 (338)
T ss_pred             CceeeEEeccCCCccc-cccccceEEEEEecccCCCC-----------ceEEEeecchhhhhhhcceeeccCCCCccc--
Confidence            9999999999999865 99999999999999753321           23555555433    457789999999877  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                            .|+.|..+++||..      ....+..+.||.+.|+.++|+|
T Consensus       283 ------ags~dr~vyvwd~~------~r~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  283 ------AGSADRFVYVWDTT------SRRILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             ------cccccceEEEeecc------cccEEEEcCCcceeEEEeeecC
Confidence                  78888999999999      7789999999999999999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-41  Score=250.47  Aligned_cols=276  Identities=19%  Similarity=0.372  Sum_probs=235.8

Q ss_pred             eeeecC-CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           25 HKTIIH-PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        25 ~~~~~h-~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .+.+.| .+.|+.+...| +++.||+++. ..|++||+.+.          ...++..+.+|.. -|+++.|..+|+.++
T Consensus        33 ~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~----------np~Pv~t~e~h~k-NVtaVgF~~dgrWMy   99 (311)
T KOG0315|consen   33 SRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSN----------NPNPVATFEGHTK-NVTAVGFQCDGRWMY   99 (311)
T ss_pred             EEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCC----------CCCceeEEeccCC-ceEEEEEeecCeEEE
Confidence            455566 57899999999 8888988876 47999999988          3358999999988 589999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.||+++|||++...+                                         .....|..+|+++..+|+. .
T Consensus       100 TgseDgt~kIWdlR~~~~-----------------------------------------qR~~~~~spVn~vvlhpnQ-t  137 (311)
T KOG0315|consen  100 TGSEDGTVKIWDLRSLSC-----------------------------------------QRNYQHNSPVNTVVLHPNQ-T  137 (311)
T ss_pred             ecCCCceEEEEeccCccc-----------------------------------------chhccCCCCcceEEecCCc-c
Confidence            999999999999986322                                         2334567999999999998 7


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      .|++|..+|.|++||+....... ...+.....|.++.+.| ++.+++.+...|..++|++-..+......++.+++.|+
T Consensus       138 eLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~  215 (311)
T KOG0315|consen  138 ELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN  215 (311)
T ss_pred             eEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence            89999999999999998875321 22334557899999999 99999999999999999998765555577888999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      +.+....+||++++ ||+++.|.+++||+.+.. -             ..-..+.+|..++.+.+||.++.||+      
T Consensus       216 ~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-~-------------kle~~l~gh~rWvWdc~FS~dg~Ylv------  274 (311)
T KOG0315|consen  216 GHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-F-------------KLELVLTGHQRWVWDCAFSADGEYLV------  274 (311)
T ss_pred             ceEEEEEECCCCcE-EEeecCCceEEEEecCCc-e-------------eeEEEeecCCceEEeeeeccCccEEE------
Confidence            99999999999997 679999999999999874 1             23456789999999999999999999      


Q ss_pred             CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                        ||+.|+.+++|++.      .++.++..++|..+..+++..
T Consensus       275 --Tassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  275 --TASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             --ecCCCCceeecccc------cCceeeecCCcccccEEEEee
Confidence              99999999999999      799999999999988887753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-40  Score=247.46  Aligned_cols=254  Identities=17%  Similarity=0.290  Sum_probs=211.0

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.||...|..+..++ ++++.++++.|+++++||+.++            ++.+.|.+|.. .|.+++|++|++.++
T Consensus        56 ~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g------------~~t~~f~GH~~-dVlsva~s~dn~qiv  121 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG------------ESTRRFVGHTK-DVLSVAFSTDNRQIV  121 (315)
T ss_pred             eeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC------------cEEEEEEecCC-ceEEEEecCCCceee
Confidence            456678999999999999 9999999999999999999999            78899999998 699999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEccCC
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSS  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~  181 (387)
                      +|+.|++|++|++.....                                         .+..  .+.+.|.|+.|+|+.
T Consensus       122 SGSrDkTiklwnt~g~ck-----------------------------------------~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen  122 SGSRDKTIKLWNTLGVCK-----------------------------------------YTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             cCCCcceeeeeeecccEE-----------------------------------------EEEecCCCcCcEEEEEEcCCC
Confidence            999999999999874321                                         2222  237899999999984


Q ss_pred             -CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          182 -AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       182 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                       +.++++++.|++|++||+++.+  ....+.+|.+.++.++++| ||.+.++|+.||.+.+||++.      ++.+..+.
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl~  231 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSLE  231 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccC------CceeEecc
Confidence             3689999999999999999887  6778889999999999999 999999999999999999998      88888777


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee-eeccCCCCeeEEEEccCCCeEEEE
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                       |...|.+++|+|+... |+.+ .+..|+|||+.......+..+.       ... ..........+++|+++|..|+  
T Consensus       232 -a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~l~~d-------~~g~s~~~~~~~clslaws~dG~tLf--  299 (315)
T KOG0279|consen  232 -AFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEELKLD-------GIGPSSKAGDPICLSLAWSADGQTLF--  299 (315)
T ss_pred             -CCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhhcccc-------ccccccccCCcEEEEEEEcCCCcEEE--
Confidence             7889999999998764 4344 4666999999985332211110       000 1122234568899999999999  


Q ss_pred             ecCCCCCCCCCceEEEEecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~  359 (387)
                            +|-.|+.|++|.+.
T Consensus       300 ------~g~td~~irv~qv~  313 (315)
T KOG0279|consen  300 ------AGYTDNVIRVWQVA  313 (315)
T ss_pred             ------eeecCCcEEEEEee
Confidence                  88889999999876

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.6e-39  Score=241.88  Aligned_cols=283  Identities=22%  Similarity=0.384  Sum_probs=232.6

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE-eccCCCceEEEEECCCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~~~~~~  100 (387)
                      .....+.+|++.|..++|+|..|.+||||+.|..|+||+...+.         ...+...+ .+|+. .|.+++|+|.|+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------s~~ck~vld~~hkr-sVRsvAwsp~g~   74 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------SWTCKTVLDDGHKR-SVRSVAWSPHGR   74 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------cEEEEEeccccchh-eeeeeeecCCCc
Confidence            44566778999999999999548899999999999999998531         11333344 34665 799999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      +|+++|.|.++.||.-..+                                      .++.+..+.+|...|.|++|+++
T Consensus        75 ~La~aSFD~t~~Iw~k~~~--------------------------------------efecv~~lEGHEnEVK~Vaws~s  116 (312)
T KOG0645|consen   75 YLASASFDATVVIWKKEDG--------------------------------------EFECVATLEGHENEVKCVAWSAS  116 (312)
T ss_pred             EEEEeeccceEEEeecCCC--------------------------------------ceeEEeeeeccccceeEEEEcCC
Confidence            9999999999999976532                                      44566889999999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          181 SAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      | ++||+++.|+.|-||.+.... ..+...++.|...|..+.|+| ...+|++++.|++|++|+-.....   ..++.++
T Consensus       117 G-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd---W~c~~tl  191 (312)
T KOG0645|consen  117 G-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD---WECVQTL  191 (312)
T ss_pred             C-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC---eeEEEEe
Confidence            9 899999999999999987543 346678889999999999999 999999999999999998773211   7899999


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      .+|...|.+++|++.|.. |+++++|++++||-.... -                  ...|...++.++|.  ...++  
T Consensus       192 ~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~-~------------------~~~~sr~~Y~v~W~--~~~Ia--  247 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTD-L------------------SGMHSRALYDVPWD--NGVIA--  247 (312)
T ss_pred             cCccceEEEEEecCCCce-EEEecCCcceEeeeeccC-c------------------chhcccceEeeeec--ccceE--
Confidence            999999999999999986 579999999999986642 0                  13577899999998  33344  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhh-hhhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~f~P  387 (387)
                            |++.|+.|++|.-....-.+.-+++. .-..|...|++|++.|
T Consensus       248 ------S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  248 ------SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP  290 (312)
T ss_pred             ------eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence                  78888999999988544444445544 4457999999999987

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-40  Score=279.14  Aligned_cols=277  Identities=25%  Similarity=0.474  Sum_probs=244.2

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+..|.+++|..|+|.-++.++||.++..+.++++++.+.            .+ ..+.||++ .|.++....+|-+|+
T Consensus       316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~------------~c-~ii~GH~e-~vlSL~~~~~g~lla  381 (775)
T KOG0319|consen  316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS------------YC-QIIPGHTE-AVLSLDVWSSGDLLA  381 (775)
T ss_pred             ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC------------ce-EEEeCchh-heeeeeecccCcEEE
Confidence            34567899999999999878999999999999999988887            33 38999998 789999667888999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      ||+.|+++++|.+++...                                    ...++....+|...|.+++++..+..
T Consensus       382 t~sKD~svilWr~~~~~~------------------------------------~~~~~a~~~gH~~svgava~~~~~as  425 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCS------------------------------------KSLCVAQANGHTNSVGAVAGSKLGAS  425 (775)
T ss_pred             EecCCceEEEEEecCCcc------------------------------------hhhhhhhhcccccccceeeecccCcc
Confidence            999999999999954321                                    22334566799999999999988888


Q ss_pred             eEEEecCCCeEEEEEccCCCC---cee----EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          184 EFCSVGDDSCLILWDARVGTS---PVI----KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~---~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      +|++++.|+++++|++...+.   +..    .....|...|++++++| +..++++||.|.+.+||++..      ....
T Consensus       426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~  498 (775)
T KOG0319|consen  426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLL  498 (775)
T ss_pred             EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC------ceEE
Confidence            999999999999999987321   111    13457999999999999 999999999999999999997      8999


Q ss_pred             EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547          257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  336 (387)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  336 (387)
                      ..+.+|...|.++.|+|..+ ++|++|.|++|+||.+.+.               .++.++.||...|..+.|-.++..|
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f---------------SClkT~eGH~~aVlra~F~~~~~ql  562 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF---------------SCLKTFEGHTSAVLRASFIRNGKQL  562 (775)
T ss_pred             EEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc---------------eeeeeecCccceeEeeeeeeCCcEE
Confidence            99999999999999999988 6789999999999999986               6789999999999999999999999


Q ss_pred             EEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +        +++.||.|++|++.      +++|+.++.+|++.|++++-+|
T Consensus       563 i--------S~~adGliKlWnik------t~eC~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  563 I--------SAGADGLIKLWNIK------TNECEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             E--------eccCCCcEEEEecc------chhhhhhhhhccceeEEEeecC
Confidence            9        89999999999999      8999999999999999998765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.1e-40  Score=264.15  Aligned_cols=261  Identities=18%  Similarity=0.405  Sum_probs=230.8

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -+..|++++|+. +|.+||+|+.||.++||+....             ...++..|.+ +|.++.|+..|+||++++.|+
T Consensus       234 ~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~  298 (524)
T KOG0273|consen  234 SNKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKG-PIFSLKWNKKGTYILSGGVDG  298 (524)
T ss_pred             ccCCcceEEecC-CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCC-ceEEEEEcCCCCEEEeccCCc
Confidence            457899999999 9999999999999999998765             5677888988 899999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      ++.+||..++...                                        +.+..|..+-..+.|-.+.  .|++++
T Consensus       299 ttilwd~~~g~~~----------------------------------------q~f~~~s~~~lDVdW~~~~--~F~ts~  336 (524)
T KOG0273|consen  299 TTILWDAHTGTVK----------------------------------------QQFEFHSAPALDVDWQSND--EFATSS  336 (524)
T ss_pred             cEEEEeccCceEE----------------------------------------EeeeeccCCccceEEecCc--eEeecC
Confidence            9999999765432                                        5566677777889997664  699999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  269 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (387)
                      .|+.|+++.+....  ....+.+|.++|.+|.|+| .+.+|++++.|++++||.+..      ......+.+|+..|..+
T Consensus       337 td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  337 TDGCIHVCKVGEDR--PVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTI  407 (524)
T ss_pred             CCceEEEEEecCCC--cceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeE
Confidence            99999999998776  5777888999999999999 999999999999999999988      88999999999999999


Q ss_pred             EEcCCCC--------eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          270 QWSPDKS--------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       270 ~~~~~~~--------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      .|+|.|.        .++++++.|++|++||+..+               .++..+..|..+|.+++|+|++.|++    
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---------------v~i~~f~kH~~pVysvafS~~g~ylA----  468 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---------------VPIHTLMKHQEPVYSVAFSPNGRYLA----  468 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---------------ceeEeeccCCCceEEEEecCCCcEEE----
Confidence            9999763        25679999999999999986               55788899999999999999999998    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                          +|+.||.|.+|+..      .++.++...+ .+.|..|.|+
T Consensus       469 ----sGs~dg~V~iws~~------~~~l~~s~~~-~~~Ifel~Wn  502 (524)
T KOG0273|consen  469 ----SGSLDGCVHIWSTK------TGKLVKSYQG-TGGIFELCWN  502 (524)
T ss_pred             ----ecCCCCeeEecccc------chheeEeecC-CCeEEEEEEc
Confidence                99999999999999      7888888875 4557777775

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.6e-39  Score=243.73  Aligned_cols=246  Identities=23%  Similarity=0.367  Sum_probs=213.5

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -..-|..++|+| .++++|+|+-|+...||++.+.+...      ..+..+.+.+|++ -+.|+.|.+ ...|+|++.|.
T Consensus        96 ~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g------~~~v~r~l~gHtg-ylScC~f~d-D~~ilT~SGD~  166 (343)
T KOG0286|consen   96 PSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEG------NVRVSRELAGHTG-YLSCCRFLD-DNHILTGSGDM  166 (343)
T ss_pred             CceeEEEEEECC-CCCeEEecCcCceeEEEecccccccc------cceeeeeecCccc-eeEEEEEcC-CCceEecCCCc
Confidence            356789999999 99999999999999999998652211      2245677999998 789999987 55789999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +..+||+++++.                                        +..+.+|.+.|.++.++|...+.|++|+
T Consensus       167 TCalWDie~g~~----------------------------------------~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  167 TCALWDIETGQQ----------------------------------------TQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             eEEEEEcccceE----------------------------------------EEEecCCcccEEEEecCCCCCCeEEecc
Confidence            999999987543                                        4778899999999999994449999999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--ccceEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--HSAAVL  267 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~~i~  267 (387)
                      -|+..++||++.+.  +.+.+.+|++.|++++|.| +|.-|++|++|++.++||+|.      .+.+..+..  -..+|+
T Consensus       207 cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELAVYSHDSIICGIT  277 (343)
T ss_pred             cccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEeeeccCcccCCce
Confidence            99999999999997  7899999999999999999 999999999999999999998      666766652  246799


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      +++||..|+.|| +|..|..+.+||.-+.               ..+..+.+|+..|+++..+|||--+.        ||
T Consensus       278 Sv~FS~SGRlLf-agy~d~~c~vWDtlk~---------------e~vg~L~GHeNRvScl~~s~DG~av~--------Tg  333 (343)
T KOG0286|consen  278 SVAFSKSGRLLF-AGYDDFTCNVWDTLKG---------------ERVGVLAGHENRVSCLGVSPDGMAVA--------TG  333 (343)
T ss_pred             eEEEcccccEEE-eeecCCceeEeecccc---------------ceEEEeeccCCeeEEEEECCCCcEEE--------ec
Confidence            999999999655 7788999999998875               34677889999999999999998777        99


Q ss_pred             CCCceEEEEe
Q 016547          348 GGGGTLQIWR  357 (387)
Q Consensus       348 ~~dg~i~iw~  357 (387)
                      +.|.++|||.
T Consensus       334 SWDs~lriW~  343 (343)
T KOG0286|consen  334 SWDSTLRIWA  343 (343)
T ss_pred             chhHheeecC
Confidence            9999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.5e-40  Score=279.02  Aligned_cols=246  Identities=22%  Similarity=0.454  Sum_probs=216.9

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.||.++|..+.|+| +.++|++++.|++|++|.+++.            .....++||.. +|+.+.|+|.|-|+
T Consensus       443 ~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~------------s~~V~y~GH~~-PVwdV~F~P~GyYF  508 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTW------------SCLVIYKGHLA-PVWDVQFAPRGYYF  508 (707)
T ss_pred             eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccc------------eeEEEecCCCc-ceeeEEecCCceEE
Confidence            3455889999999999999 8899999999999999999999            78889999998 89999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ||++.|++.++|....                                        ..+++.+.+|...|.|+.|+|+. 
T Consensus       509 atas~D~tArLWs~d~----------------------------------------~~PlRifaghlsDV~cv~FHPNs-  547 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDH----------------------------------------NKPLRIFAGHLSDVDCVSFHPNS-  547 (707)
T ss_pred             EecCCCceeeeeeccc----------------------------------------CCchhhhcccccccceEEECCcc-
Confidence            9999999999999863                                        34668889999999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      +++++|+.|.+|++||+.++.  .++.+.+|.++|++++|+| +|++|++|+.||.|.+||+.+      +.++..+.+|
T Consensus       548 ~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~H  618 (707)
T KOG0263|consen  548 NYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGH  618 (707)
T ss_pred             cccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------Ccchhhhhcc
Confidence            899999999999999999998  6889999999999999999 999999999999999999999      8999999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC---------CCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG---------PRTTNYPAGLFFQHAGHRDKVVDFHWNASD  333 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  333 (387)
                      .+.|.++.|+.+|. +||+|+.|..|++||+..........         .........++..+..-..+|..+.|...+
T Consensus       619 t~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  619 TGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN  697 (707)
T ss_pred             cCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence            99999999999999 68899999999999998754441110         011112334566677777799999998755

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.5e-40  Score=262.32  Aligned_cols=280  Identities=21%  Similarity=0.363  Sum_probs=231.5

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE---eccCCCceEEEEECCCCCE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL---TGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---~~h~~~~v~~~~~~~~~~~  101 (387)
                      .+...|..+|.+.+|+|....++++|+.|-..++|++...........  ..+.....   ...+...|++++|+.+|..
T Consensus       172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~--~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL--VLRHCIREGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh--hhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence            355569999999999996666999999999999999875211100000  00000001   1122245999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      ||+|+.||.+++|+...                                         ..+..+..|+++|.++.|+..|
T Consensus       250 LatG~~~G~~riw~~~G-----------------------------------------~l~~tl~~HkgPI~slKWnk~G  288 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKDG-----------------------------------------NLISTLGQHKGPIFSLKWNKKG  288 (524)
T ss_pred             EEEeecCcEEEEEecCc-----------------------------------------hhhhhhhccCCceEEEEEcCCC
Confidence            99999999999999863                                         3446788899999999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       .++++++.|+++.+||..++.  ....+..|..+-..+.|-  +...|++++.|+.|+++.+..      ..|+.++.+
T Consensus       289 -~yilS~~vD~ttilwd~~~g~--~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~------~~P~~t~~G  357 (524)
T KOG0273|consen  289 -TYILSGGVDGTTILWDAHTGT--VKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGE------DRPVKTFIG  357 (524)
T ss_pred             -CEEEeccCCccEEEEeccCce--EEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecC------CCcceeeec
Confidence             899999999999999999888  667777788887788887  477899999999999999998      889999999


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC-------
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-------  334 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------  334 (387)
                      |.+.|.++.|+|.+. ||++++.|++++||++...               .....+.+|+..|..+.|+|+|+       
T Consensus       358 H~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~---------------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  358 HHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQS---------------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             ccCceEEEEECCCCc-eEEEecCCCeeEeeecCCC---------------cchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            999999999999999 6889999999999998775               34667789999999999999764       


Q ss_pred             -eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          335 -WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       335 -~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                       ..+++       ++.|++|++||+.      .+.++..+..|..+|++|+|+|
T Consensus       422 ~~~l~s-------as~dstV~lwdv~------~gv~i~~f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  422 NLMLAS-------ASFDSTVKLWDVE------SGVPIHTLMKHQEPVYSVAFSP  462 (524)
T ss_pred             CceEEE-------eecCCeEEEEEcc------CCceeEeeccCCCceEEEEecC
Confidence             34554       4455999999999      8999999999999999999998

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-39  Score=238.90  Aligned_cols=272  Identities=22%  Similarity=0.335  Sum_probs=234.4

Q ss_pred             cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      |..+...+..|+++|+++.|+- +|++.+|++.|.+|++|+...+            ..+.++.+|.. .|..++.+.|+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~-EVlD~~~s~Dn   71 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGH-EVLDAALSSDN   71 (307)
T ss_pred             cchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCc-eeeeccccccc
Confidence            3444556678999999999999 9999999999999999999988            88999999987 79999999999


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      ..+++|+.|+.+.+||+++++.                                        .+.+++|...|+.++|+.
T Consensus        72 skf~s~GgDk~v~vwDV~TGkv----------------------------------------~Rr~rgH~aqVNtV~fNe  111 (307)
T KOG0316|consen   72 SKFASCGGDKAVQVWDVNTGKV----------------------------------------DRRFRGHLAQVNTVRFNE  111 (307)
T ss_pred             cccccCCCCceEEEEEcccCee----------------------------------------eeecccccceeeEEEecC
Confidence            9999999999999999987643                                        477899999999999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      +. ..+++|+.|..+++||.++.....++.+......|.++...   +..+++|+.||++|.||++.      +....-+
T Consensus       112 es-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy  181 (307)
T KOG0316|consen  112 ES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDY  181 (307)
T ss_pred             cc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhh
Confidence            87 89999999999999999998766778887888899999884   57899999999999999998      6665544


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe--eEEEEccCCCeEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTV  337 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~  337 (387)
                      -  ..+|+++.|+++++..| .++.|+.+++.|-.++               +++....+|...=  ...+++.....++
T Consensus       182 ~--g~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG---------------klL~sYkGhkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  182 F--GHPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG---------------KLLKSYKGHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             c--CCcceeEEecCCCCEEE-Eeeccceeeecccchh---------------HHHHHhcccccceeeeeeeecccceeEE
Confidence            4  56899999999999866 6778999999998886               4566678887644  4455666666666


Q ss_pred             EEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCce-EEEeeecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH-VISCTSKP  387 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-v~~~~f~P  387 (387)
                              +|+.||.|++||+.      ....+..+..+... |.+++++|
T Consensus       244 --------sgSEDG~Vy~wdLv------d~~~~sk~~~~~~v~v~dl~~hp  280 (307)
T KOG0316|consen  244 --------SGSEDGKVYFWDLV------DETQISKLSVVSTVIVTDLSCHP  280 (307)
T ss_pred             --------eccCCceEEEEEec------cceeeeeeccCCceeEEeeeccc
Confidence                    88888999999999      68888889988888 89999988

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.9e-41  Score=263.04  Aligned_cols=248  Identities=22%  Similarity=0.387  Sum_probs=218.0

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      +..|.++|+++.|++ ++.++++|+.+|.|++|+..-.             -+..+..|+...|.+++|+|+...+++|+
T Consensus       134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~t~S  199 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCS  199 (464)
T ss_pred             hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeEEec
Confidence            346999999999999 9999999999999999998654             34556677755899999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .||+|+|||......                                        ...+.+|.-.|.++.|+|.. .+++
T Consensus       200 dDg~ikiWdf~~~ke----------------------------------------e~vL~GHgwdVksvdWHP~k-gLia  238 (464)
T KOG0284|consen  200 DDGTIKIWDFRMPKE----------------------------------------ERVLRGHGWDVKSVDWHPTK-GLIA  238 (464)
T ss_pred             CCCeEEEEeccCCch----------------------------------------hheeccCCCCcceeccCCcc-ceeE
Confidence            999999999975322                                        25668999999999999998 7999


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                      +++.|..|++||.+++.  ++..+..|...|..+.|+| ++++|+++|.|..+++||+++      .+.+..+++|...+
T Consensus       239 sgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv  309 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDV  309 (464)
T ss_pred             EccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhh
Confidence            99999999999999999  7888899999999999999 889999999999999999998      78899999999999


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      ++++|+|-.+.||++|+.||.|..|.+... ++             +...-.+|...|++++|+|-|..|+        +
T Consensus       310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p-------------~~~i~~AHd~~iwsl~~hPlGhil~--------t  367 (464)
T KOG0284|consen  310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EP-------------LGEIPPAHDGEIWSLAYHPLGHILA--------T  367 (464)
T ss_pred             eeeccccccccceeeccCCCceEEEecccc-cc-------------ccCCCcccccceeeeeccccceeEe--------e
Confidence            999999998889999999999999999842 11             1223368999999999999887555        7


Q ss_pred             CCCCceEEEEecCC
Q 016547          347 TGGGGTLQIWRMSD  360 (387)
Q Consensus       347 g~~dg~i~iw~~~~  360 (387)
                      |+.|.++++|.-..
T Consensus       368 gsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNR  381 (464)
T ss_pred             cCCCcceeeeccCC
Confidence            77779999998663

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-39  Score=240.57  Aligned_cols=261  Identities=24%  Similarity=0.426  Sum_probs=226.0

Q ss_pred             cCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        18 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      +.+-+.....+.-.+.+..++|++...+.+++++.||++++||+....           .|++.++.|.. .|.++.|++
T Consensus        47 ~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-----------~Pi~~~kEH~~-EV~Svdwn~  114 (311)
T KOG0277|consen   47 DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-----------KPIHKFKEHKR-EVYSVDWNT  114 (311)
T ss_pred             CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-----------cchhHHHhhhh-heEEecccc
Confidence            344566667777889999999999899999999999999999955442           68899999998 799999998


Q ss_pred             -CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 -TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 -~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                       ++..++++|.|++|++|+...+                                        ..+.++.+|...|...+
T Consensus       115 ~~r~~~ltsSWD~TiKLW~~~r~----------------------------------------~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen  115 VRRRIFLTSSWDGTIKLWDPNRP----------------------------------------NSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             ccceeEEeeccCCceEeecCCCC----------------------------------------cceEeecCCccEEEEEe
Confidence             4566888899999999998643                                        33477899999999999


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      |+|..+++|++++.|+++++||++...+.  ..+..|...|.++.|+..+.+.+++|+.|+.|+.||+++.     ..++
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-----r~pl  227 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKF--MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-----RTPL  227 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCce--eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-----cccc
Confidence            99998899999999999999999987633  3378899999999999989999999999999999999986     6789


Q ss_pred             EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547          257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  336 (387)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  336 (387)
                      .++.+|+-.|..++|||....+||+++.|-+++|||.....              .++.+...|..-|..+.|++-.+..
T Consensus       228 ~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------------s~~e~~~~HtEFv~g~Dws~~~~~~  293 (311)
T KOG0277|consen  228 FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------------SAIETVDHHTEFVCGLDWSLFDPGQ  293 (311)
T ss_pred             eeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------------hhhhhhhccceEEeccccccccCce
Confidence            99999999999999999988899999999999999998643              2355566788899999999987777


Q ss_pred             EEEecCCCCCCCCCceEEEEec
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +|       ++|.|..++||+-
T Consensus       294 vA-------s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  294 VA-------STGWDELLYVWNP  308 (311)
T ss_pred             ee-------ecccccceeeecc
Confidence            76       6667799999984

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-38  Score=255.99  Aligned_cols=317  Identities=18%  Similarity=0.219  Sum_probs=241.4

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe---ccCCCceEEEEE
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT---GHQDNAEFALAM   95 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~v~~~~~   95 (387)
                      .|+.-......|..-|+|++|+| ++.++||.+.||+|.+||-.++            ..+..+.   +|.+ .|+++.|
T Consensus       178 PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg------------e~vg~l~~~~aHkG-sIfalsW  243 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG------------EKVGELEDSDAHKG-SIFALSW  243 (603)
T ss_pred             CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc------------cEEEEecCCCCccc-cEEEEEE
Confidence            34444455556999999999999 8999999999999999999999            5556666   8888 5999999


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceecc------CCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           96 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ------SPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        96 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      +||++.+++++.|.+++|||+.+......+......   ....+-..      ..-...+.+.+.+.....+...+.+|.
T Consensus       244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v---~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn  320 (603)
T KOG0318|consen  244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV---EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN  320 (603)
T ss_pred             CCCCceEEEecCCceEEEEEeeccceEEEeecCCch---hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc
Confidence            999999999999999999999988655544332220   01111111      111234556666666777889999999


Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee-----------------------------E------------
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-----------------------------K------------  208 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------~------------  208 (387)
                      ..|+++..+|++ .+|++|+.||.|.-||..++..-.+                             +            
T Consensus       321 K~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~  399 (603)
T KOG0318|consen  321 KSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS  399 (603)
T ss_pred             cceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc
Confidence            999999999999 8999999999999999876521000                             0            


Q ss_pred             ------------------------------Eeec--------cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          209 ------------------------------VEKA--------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       209 ------------------------------~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                                                    .+..        -.-...+++++| +++.+++|+.||.|++|.+....  
T Consensus       400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~--  476 (603)
T KOG0318|consen  400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDE--  476 (603)
T ss_pred             ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCc--
Confidence                                          0000        011234688899 99999999999999999998632  


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                        .........|.++|+++++|||+.+ ||++...+.+.+||+.+....              .....-|...|.+++|+
T Consensus       477 --l~ee~~~~~h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~~~~--------------~~~w~FHtakI~~~aWs  539 (603)
T KOG0318|consen  477 --LKEEAKLLEHRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASREVK--------------TNRWAFHTAKINCVAWS  539 (603)
T ss_pred             --ccceeeeecccCCceEEEECCCCcE-EEEeccCCcEEEEEcccCcee--------------cceeeeeeeeEEEEEeC
Confidence              2344455679999999999999996 689999999999999874221              22233489999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      |++..++        ||+.|..|.||++..+     .+.+.....|...|+.|.|-
T Consensus       540 P~n~~vA--------TGSlDt~Viiysv~kP-----~~~i~iknAH~~gVn~v~wl  582 (603)
T KOG0318|consen  540 PNNKLVA--------TGSLDTNVIIYSVKKP-----AKHIIIKNAHLGGVNSVAWL  582 (603)
T ss_pred             CCceEEE--------eccccceEEEEEccCh-----hhheEeccccccCceeEEEe
Confidence            9988766        8888899999999953     33356667899889999873

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=277.64  Aligned_cols=267  Identities=26%  Similarity=0.450  Sum_probs=229.9

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      |...|.|+.|++ +++.+++++.|+.+++|+....+.          .....+.+|.. .|..++|+|+++++++++.|+
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~-~v~~~~fs~d~~~l~s~s~D~  225 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTR-GVSDVAFSPDGSYLLSGSDDK  225 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc----------hhhcccccccc-ceeeeEECCCCcEEEEecCCc
Confidence            378999999999 888999999999999999976621          14555688887 699999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|++||+...                                       ...++++.+|...|++++|+|++ +++++|+
T Consensus       226 tiriwd~~~~---------------------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs  265 (456)
T KOG0266|consen  226 TLRIWDLKDD---------------------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGS  265 (456)
T ss_pred             eEEEeeccCC---------------------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEec
Confidence            9999999432                                       23457889999999999999999 9999999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC--ceEEeccccce--
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHSAA--  265 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~--  265 (387)
                      .|++|++||+++++  +...+.+|...|++++|++ ++++|++++.||.|++||+.+      +.  ++..+..+...  
T Consensus       266 ~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~  336 (456)
T KOG0266|consen  266 DDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP  336 (456)
T ss_pred             CCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence            99999999999977  7889999999999999999 999999999999999999998      66  45677666655  


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC---eeEEEEccCCCeEEEEecC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~s~s~  342 (387)
                      ++++.|+|++.++ +++..|+.+++||+....               ......+|...   +.+...++.+.+++     
T Consensus       337 ~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----  395 (456)
T KOG0266|consen  337 VTSVQFSPNGKYL-LSASLDRTLKLWDLRSGK---------------SVGTYTGHSNLVRCIFSPTLSTGGKLIY-----  395 (456)
T ss_pred             eeEEEECCCCcEE-EEecCCCeEEEEEccCCc---------------ceeeecccCCcceeEecccccCCCCeEE-----
Confidence            9999999999985 589999999999999863               34455666653   44455577788877     


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhhhhhcc-CceEEEeeecC
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCTSKP  387 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~f~P  387 (387)
                         +|+.|+.|++|++.      ++..+..+.+| ...|..++++|
T Consensus       396 ---sg~~d~~v~~~~~~------s~~~~~~l~~h~~~~~~~~~~~~  432 (456)
T KOG0266|consen  396 ---SGSEDGSVYVWDSS------SGGILQRLEGHSKAAVSDLSSHP  432 (456)
T ss_pred             ---EEeCCceEEEEeCC------ccchhhhhcCCCCCceeccccCC
Confidence               88888999999999      79999999999 88888888876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.2e-39  Score=249.44  Aligned_cols=245  Identities=26%  Similarity=0.457  Sum_probs=221.4

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ....+|.+-|.|+++-| ...+++||+.|++|+|||+.++            +...++.||-. .|..+++|+...||.+
T Consensus       145 rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~-~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATG------------QLKLTLTGHIE-TVRGVAVSKRHPYLFS  210 (460)
T ss_pred             hhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccC------------eEEEeecchhh-eeeeeeecccCceEEE
Confidence            34557999999999999 7899999999999999999999            88899999998 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|+.|+.||++..                                        +.++.+.+|-..|.|++.+|.- ..
T Consensus       211 ~gedk~VKCwDLe~n----------------------------------------kvIR~YhGHlS~V~~L~lhPTl-dv  249 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYN----------------------------------------KVIRHYHGHLSGVYCLDLHPTL-DV  249 (460)
T ss_pred             ecCCCeeEEEechhh----------------------------------------hhHHHhccccceeEEEeccccc-ee
Confidence            999999999999854                                        3447788999999999999998 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++|+.|.++++||+++..  .+..+.+|..+|.++.+.| ....+++|+.|++|++||++.      ++....+..|..
T Consensus       250 l~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a------gkt~~tlt~hkk  320 (460)
T KOG0285|consen  250 LVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRA------GKTMITLTHHKK  320 (460)
T ss_pred             EEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeecc------CceeEeeecccc
Confidence            9999999999999999988  6888999999999999999 777899999999999999999      899999999999


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      .+.+++.+|... +||+++.| .|+-|++..+               ..+..+.+|..-|++++.+.|+ +++       
T Consensus       321 svral~lhP~e~-~fASas~d-nik~w~~p~g---------------~f~~nlsgh~~iintl~~nsD~-v~~-------  375 (460)
T KOG0285|consen  321 SVRALCLHPKEN-LFASASPD-NIKQWKLPEG---------------EFLQNLSGHNAIINTLSVNSDG-VLV-------  375 (460)
T ss_pred             eeeEEecCCchh-hhhccCCc-cceeccCCcc---------------chhhccccccceeeeeeeccCc-eEE-------
Confidence            999999999876 68898877 5999999986               3455678999999999998876 455       


Q ss_pred             CCCCCCceEEEEecC
Q 016547          345 DSTGGGGTLQIWRMS  359 (387)
Q Consensus       345 ~tg~~dg~i~iw~~~  359 (387)
                       +|+++|.+..||..
T Consensus       376 -~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  376 -SGGDNGSIMFWDWK  389 (460)
T ss_pred             -EcCCceEEEEEecC
Confidence             78888999999998

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-38  Score=233.84  Aligned_cols=258  Identities=14%  Similarity=0.295  Sum_probs=216.1

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ..-+|++++.|-+|++|...++            .+..+++... +.|+.+...|++++|++++ ...||+||+++.   
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG------------~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~---   71 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTG------------ICSRTIQHPD-SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSN---   71 (311)
T ss_pred             CceEEEeccCcceeeeeehhcC------------eEEEEEecCc-cceeeEEEcCCcchhhhcc-CCeeEEEEccCC---
Confidence            4568999999999999999999            7777776554 4799999999999999988 468999999863   


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  202 (387)
                                                         ...++..+.+|+..|+.+.|..+| +.+++|++||+++|||++..
T Consensus        72 -----------------------------------np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~  115 (311)
T KOG0315|consen   72 -----------------------------------NPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL  115 (311)
T ss_pred             -----------------------------------CCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc
Confidence                                               234678899999999999999999 89999999999999999985


Q ss_pred             CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEE
Q 016547          203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s  281 (387)
                      .  +.+ ...|.++|+++..+| +...|++|..+|.|++||+..      ..+..++- .....|.++...|+|.+ ++.
T Consensus       116 ~--~qR-~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~------~~c~~~liPe~~~~i~sl~v~~dgsm-l~a  184 (311)
T KOG0315|consen  116 S--CQR-NYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGE------NSCTHELIPEDDTSIQSLTVMPDGSM-LAA  184 (311)
T ss_pred             c--cch-hccCCCCcceEEecC-CcceEEeecCCCcEEEEEccC------CccccccCCCCCcceeeEEEcCCCcE-EEE
Confidence            5  333 345779999999999 888999999999999999998      44444443 23467999999999996 567


Q ss_pred             ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      +...|..++|++-.....         .+...+..+..|++.+..+.+||++++|+        |+|.|.+++||+.++.
T Consensus       185 ~nnkG~cyvW~l~~~~~~---------s~l~P~~k~~ah~~~il~C~lSPd~k~la--------t~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  185 ANNKGNCYVWRLLNHQTA---------SELEPVHKFQAHNGHILRCLLSPDVKYLA--------TCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ecCCccEEEEEccCCCcc---------ccceEhhheecccceEEEEEECCCCcEEE--------eecCCceEEEEecCCc
Confidence            888999999999873222         23345677899999999999999999988        7888899999999942


Q ss_pred             cccccchhhhhhhccCceEEEeeec
Q 016547          362 IYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                           -+.-..+.+|...++.++||
T Consensus       248 -----~kle~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  248 -----FKLELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             -----eeeEEEeecCCceEEeeeec
Confidence                 24446788999999999998

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-38  Score=236.63  Aligned_cols=269  Identities=20%  Similarity=0.336  Sum_probs=224.7

Q ss_pred             EEEEecCCCCcEEEEec-------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEec
Q 016547           35 NRIRELPQNTKIVATHT-------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG  106 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~  106 (387)
                      .++.|+|--.+.||.+.       ..|++.|.++...+..         .....+.-..  .+..++|+++ .+.+++++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi---------~e~~s~d~~D--~LfdV~Wse~~e~~~~~a~   80 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI---------QECQSYDTED--GLFDVAWSENHENQVIAAS   80 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe---------EEEEeeeccc--ceeEeeecCCCcceEEEEe
Confidence            67889996666665553       3689999998754211         2222333333  5889999986 45788899


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .||++++||+..                                       ...++..++.|..+|.++.|++..+..++
T Consensus        81 GDGSLrl~d~~~---------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l  121 (311)
T KOG0277|consen   81 GDGSLRLFDLTM---------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFL  121 (311)
T ss_pred             cCceEEEeccCC---------------------------------------CCcchhHHHhhhhheEEeccccccceeEE
Confidence            999999999642                                       23467889999999999999998878899


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                      +++-|++|++|+...++  .+.++.+|...|...+|+|..++++++++.|+.+++||++..     ++.+. +..|...|
T Consensus       122 tsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Ei  193 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEI  193 (311)
T ss_pred             eeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----CceeE-EEecccee
Confidence            99999999999998877  577899999999999999999999999999999999999984     55555 89999999


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .++.|+.-+++++++|+.|+.|++||+++...+              +..+.+|.-.|..+.|||....++++||.|   
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYD---  256 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--------------LFELNGHGLAVRKVKFSPHHASLLASASYD---  256 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhcccc--------------ceeecCCceEEEEEecCcchhhHhhhcccc---
Confidence            999999999999999999999999999986543              677799999999999999999899866665   


Q ss_pred             CCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          347 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       347 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          -++||||...     ....+++...|+.-|..++||+
T Consensus       257 ----mT~riw~~~~-----~ds~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  257 ----MTVRIWDPER-----QDSAIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             ----ceEEeccccc-----chhhhhhhhccceEEecccccc
Confidence                9999999984     4667888899999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.9e-40  Score=265.82  Aligned_cols=280  Identities=18%  Similarity=0.285  Sum_probs=239.5

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT   98 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~   98 (387)
                      .|....+...||+..|.++.|+|..+.+|++|+.|+.|+||++....           .+++++.+|.. +|..++|+++
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k-~Vrd~~~s~~  269 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRK-PVRDASFNNC  269 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchh-hhhhhhcccc
Confidence            34555677789999999999999899999999999999999998842           78899999998 8999999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      |..+++++.|+.|++||++++++...+..                                         ...++|+.|+
T Consensus       270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----------------------------------------~~~~~cvkf~  308 (503)
T KOG0282|consen  270 GTSFLSASFDRFLKLWDTETGQVLSRFHL-----------------------------------------DKVPTCVKFH  308 (503)
T ss_pred             CCeeeeeecceeeeeeccccceEEEEEec-----------------------------------------CCCceeeecC
Confidence            99999999999999999998876543322                                         3568999999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      |++.+.|++|+.|+.|+.||+++++  .+..+..|-+.|..+.|-+ ++..+++.++|+++++|+.+.      ..++..
T Consensus       309 pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~------~v~ik~  379 (503)
T KOG0282|consen  309 PDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI------PVPIKN  379 (503)
T ss_pred             CCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC------Cccchh
Confidence            9998999999999999999999998  6778888999999999999 999999999999999999997      444433


Q ss_pred             e-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCe
Q 016547          259 F-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPW  335 (387)
Q Consensus       259 ~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  335 (387)
                      + ..+.....++..+|++++ +++-+.|+.|.+|.+...-+            ......+.+|..  .-..+.|||||++
T Consensus       380 i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r------------~nkkK~feGh~vaGys~~v~fSpDG~~  446 (503)
T KOG0282|consen  380 IADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFR------------LNKKKRFEGHSVAGYSCQVDFSPDGRT  446 (503)
T ss_pred             hcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccc------------cCHhhhhcceeccCceeeEEEcCCCCe
Confidence            3 223345678999999996 67888999999999765422            133445567654  4577899999999


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |+        +|..||.+.+||.+      +-+++..++.|.+++..++|+|
T Consensus       447 l~--------SGdsdG~v~~wdwk------t~kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  447 LC--------SGDSDGKVNFWDWK------TTKLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             EE--------eecCCccEEEeech------hhhhhhccccCCcceEEEEecC
Confidence            98        99999999999999      8999999999999999999998

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.8e-38  Score=234.02  Aligned_cols=254  Identities=18%  Similarity=0.320  Sum_probs=211.1

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ..-+|+..|+.++|+| .+++||+|+.|.++.||.-..+          ..+++..++||.. .|.|++|+++|.+||+|
T Consensus        56 ld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~----------efecv~~lEGHEn-EVK~Vaws~sG~~LATC  123 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDG----------EFECVATLEGHEN-EVKCVAWSASGNYLATC  123 (312)
T ss_pred             ccccchheeeeeeecC-CCcEEEEeeccceEEEeecCCC----------ceeEEeeeecccc-ceeEEEEcCCCCEEEEe
Confidence            3346999999999999 8999999999999999987765          4478899999998 79999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      ++|++|-||.+...                                     ...+....++.|+..|..+.|+|.. .+|
T Consensus       124 SRDKSVWiWe~ded-------------------------------------dEfec~aVL~~HtqDVK~V~WHPt~-dlL  165 (312)
T KOG0645|consen  124 SRDKSVWIWEIDED-------------------------------------DEFECIAVLQEHTQDVKHVIWHPTE-DLL  165 (312)
T ss_pred             eCCCeEEEEEecCC-------------------------------------CcEEEEeeeccccccccEEEEcCCc-cee
Confidence            99999999998742                                     3455668899999999999999987 799


Q ss_pred             EEecCCCeEEEEEcc-CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          186 CSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      ++++.|.+|++|+-. .....+...+.+|...|.+++|++ .|..|++++.|++++||-..+      .-+    ..|..
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~------~~~----~~~sr  234 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT------DLS----GMHSR  234 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc------Ccc----hhccc
Confidence            999999999999887 566678889999999999999999 999999999999999998664      111    22778


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee-eeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      .++.++|. ++  ++|+++.|+.|++|.-.......         ...++ ..-..|+..|+++.|+|..+.+++     
T Consensus       235 ~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p---------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~-----  297 (312)
T KOG0645|consen  235 ALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP---------SWNLLAKKEGAHEVDVNSVQWNPKVSNRLA-----  297 (312)
T ss_pred             ceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc---------hHHHHHhhhcccccccceEEEcCCCCCcee-----
Confidence            89999998 55  68999999999999876421110         01112 234568999999999997555666     


Q ss_pred             CCCCCCCceEEEEecC
Q 016547          344 CDSTGGGGTLQIWRMS  359 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~  359 (387)
                        +||.||.|++|.+.
T Consensus       298 --s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  298 --SGGDDGIVNFWELE  311 (312)
T ss_pred             --ecCCCceEEEEEec
Confidence              55666999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-37  Score=262.84  Aligned_cols=333  Identities=17%  Similarity=0.255  Sum_probs=261.4

Q ss_pred             cCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           18 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        18 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      ..|+....+..+|-..|.++.|+. +.++|++|+.|-++++|+++..+.          -....+.+|.+ .|-++.|..
T Consensus       132 ~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~----------~~~~~l~gHkd-~VvacfF~~  199 (893)
T KOG0291|consen  132 FNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKN----------LFTYALNGHKD-YVVACFFGA  199 (893)
T ss_pred             cCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEeccccc----------cceEeccCCCc-ceEEEEecc
Confidence            466777788889999999999999 999999999999999999998732          23567899998 677889999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCcccc--------------CCCcc-------------cCC---------CCCCceec
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSAT--------------DPATA-------------KSA---------GSSGSIIK  141 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~--------------~~~~~-------------~~~---------~~~~~~~~  141 (387)
                      +...+++.+.||.+.+|...........              .....             ...         ........
T Consensus       200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~  279 (893)
T KOG0291|consen  200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNL  279 (893)
T ss_pred             CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceE
Confidence            9999999999999999988732100000              00000             000         00011111


Q ss_pred             cCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-CCCeEEEEEccCCCCceeEEeeccCCCeeEE
Q 016547          142 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCV  220 (387)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~  220 (387)
                      ...+...+...++..+....+..+.-...+|..+.|+..| ..++.|+ .-|.+.+|+..+..  .+...++|...++++
T Consensus       280 lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l  356 (893)
T KOG0291|consen  280 LVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSL  356 (893)
T ss_pred             EEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc--eeeeccccccceeeE
Confidence            2223345555677788888888888878899999999998 5676665 45899999998877  567778999999999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee
Q 016547          221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  300 (387)
Q Consensus       221 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  300 (387)
                      +++| +|+++++|+.||.|++||...      +-|+.+|..|...|+.+.|+..|+.+ .+.+.||+|+.||+.......
T Consensus       357 ~YSp-Dgq~iaTG~eDgKVKvWn~~S------gfC~vTFteHts~Vt~v~f~~~g~~l-lssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  357 AYSP-DGQLIATGAEDGKVKVWNTQS------GFCFVTFTEHTSGVTAVQFTARGNVL-LSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             EECC-CCcEEEeccCCCcEEEEeccC------ceEEEEeccCCCceEEEEEEecCCEE-EEeecCCeEEeeeecccceee
Confidence            9999 999999999999999999999      99999999999999999999999964 599999999999998866554


Q ss_pred             ccCCCCC-----------------------------CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547          301 EQGPRTT-----------------------------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  351 (387)
Q Consensus       301 ~~~~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg  351 (387)
                      +...+.+                             ....+++..+.||+++|.+++|+|.+..|+        +|+.|.
T Consensus       429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La--------S~SWDk  500 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA--------SGSWDK  500 (893)
T ss_pred             eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE--------eccccc
Confidence            4433221                             134456778899999999999999999777        888999


Q ss_pred             eEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          352 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       352 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +||+||+-.     +.....+++ +...|.+++|+|
T Consensus       501 TVRiW~if~-----s~~~vEtl~-i~sdvl~vsfrP  530 (893)
T KOG0291|consen  501 TVRIWDIFS-----SSGTVETLE-IRSDVLAVSFRP  530 (893)
T ss_pred             eEEEEEeec-----cCceeeeEe-eccceeEEEEcC
Confidence            999999984     233444444 778899999988

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-38  Score=246.58  Aligned_cols=248  Identities=21%  Similarity=0.370  Sum_probs=223.4

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.||.+.|..|+|.. .|++||+++.|-.+++||.++..           +++..+.+|.. .|.+++|-|.|.++++
T Consensus       144 ~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~-----------~c~ks~~gh~h-~vS~V~f~P~gd~ilS  210 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFF-----------RCIKSLIGHEH-GVSSVFFLPLGDHILS  210 (406)
T ss_pred             hhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHH-----------HHHHHhcCccc-ceeeEEEEecCCeeee
Confidence            45568999999999998 88999999999999999998742           56777888887 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|.+|+.|++.++-+                                        +.++.+|...|..++.+.|| .+
T Consensus       211 ~srD~tik~We~~tg~c----------------------------------------v~t~~~h~ewvr~v~v~~DG-ti  249 (406)
T KOG0295|consen  211 CSRDNTIKAWECDTGYC----------------------------------------VKTFPGHSEWVRMVRVNQDG-TI  249 (406)
T ss_pred             cccccceeEEeccccee----------------------------------------EEeccCchHhEEEEEecCCe-eE
Confidence            99999999999987543                                        47788999999999999999 99


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--------------CCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------------DDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      +++++.|.++++|-+.+++  +...+..|+.+|.+++|.|.              .+.++++++.|++|++||+.+    
T Consensus       250 ~As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t----  323 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST----  323 (406)
T ss_pred             EEecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC----
Confidence            9999999999999999887  56677889999999999763              236999999999999999999    


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                        +.++.++.+|...|..++|+|.|+|| +++.+|+++++||++..               ++...+..|+.-|++++|+
T Consensus       324 --g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~~---------------~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  324 --GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKNL---------------QCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             --CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEeccc---------------eeeeccCCCcceeEEEecC
Confidence              99999999999999999999999985 59999999999999986               5677788999999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      .+.++++        ||+-|.++++|.-
T Consensus       386 ~~~p~Vv--------TGsVdqt~KvwEc  405 (406)
T KOG0295|consen  386 KTAPYVV--------TGSVDQTVKVWEC  405 (406)
T ss_pred             CCCceEE--------eccccceeeeeec
Confidence            9999888        9999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.2e-39  Score=248.35  Aligned_cols=259  Identities=20%  Similarity=0.385  Sum_probs=221.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      ....|.|+.|   +...+++|..|++|+|||..+.            .+...+.||++ .|.|+.|  +.+.+++|+.|.
T Consensus       196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtG-SVLCLqy--d~rviisGSSDs  257 (499)
T KOG0281|consen  196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTG-SVLCLQY--DERVIVSGSSDS  257 (499)
T ss_pred             cCCceEEEEe---cchhhhcccccCceEEeccccH------------HHHHhhhcCCC-cEEeeec--cceEEEecCCCc
Confidence            4578999998   5567999999999999999988            78889999998 5889988  567999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|++||++++                                        +++.++.+|.+.|..+.|+.   .++++++
T Consensus       258 TvrvWDv~tg----------------------------------------e~l~tlihHceaVLhlrf~n---g~mvtcS  294 (499)
T KOG0281|consen  258 TVRVWDVNTG----------------------------------------EPLNTLIHHCEAVLHLRFSN---GYMVTCS  294 (499)
T ss_pred             eEEEEeccCC----------------------------------------chhhHHhhhcceeEEEEEeC---CEEEEec
Confidence            9999999864                                        45678889999999999973   5799999


Q ss_pred             CCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          190 DDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      .|.++.+||+..... .+...+.+|...|+.+.|+.   +++++++.|.+|++|++.+      ++.++++.+|...|-|
T Consensus       295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAC  365 (499)
T KOG0281|consen  295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIAC  365 (499)
T ss_pred             CCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccc------eeeehhhhccccccee
Confidence            999999999987552 23456779999999999954   6999999999999999999      9999999999999999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                      +.+.  ++ ++++|+.|.+|++||+..+               .++..+.||+.-|.++.|.  .+.++        +|+
T Consensus       366 lQYr--~r-lvVSGSSDntIRlwdi~~G---------------~cLRvLeGHEeLvRciRFd--~krIV--------SGa  417 (499)
T KOG0281|consen  366 LQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCIRFD--NKRIV--------SGA  417 (499)
T ss_pred             hhcc--Ce-EEEecCCCceEEEEecccc---------------HHHHHHhchHHhhhheeec--Cceee--------ecc
Confidence            9874  55 6789999999999999986               5677889999999999996  45676        888


Q ss_pred             CCceEEEEecCCCc---ccccchhhhhhhccCceEEEeeec
Q 016547          349 GGGTLQIWRMSDLI---YRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       349 ~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      .||+|+|||+....   .....-++.++..|.+.|..+.|-
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            99999999998532   122334788889999999999883

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-37  Score=258.18  Aligned_cols=266  Identities=20%  Similarity=0.309  Sum_probs=236.5

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      ..|...|.++.++| ...+++++-.+|.|.|||.++.            ..+..+....- +|.+..|-+..+.+++|+.
T Consensus        10 ~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetq------------tmVksfeV~~~-PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQ------------TMVKSFEVSEV-PVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             hccCCceeeeecCC-CCceEEEeeecCeeEEEecccc------------eeeeeeeeccc-chhhheeeeccceEEEecC
Confidence            34899999999999 8889999999999999999998            66667766665 7899999999999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      |..|+||+.++.                                        +.+..+..|.+-|.+++.+|.. -++++
T Consensus        76 D~~IrVfnynt~----------------------------------------ekV~~FeAH~DyIR~iavHPt~-P~vLt  114 (794)
T KOG0276|consen   76 DMQIRVFNYNTG----------------------------------------EKVKTFEAHSDYIRSIAVHPTL-PYVLT  114 (794)
T ss_pred             CceEEEEecccc----------------------------------------eeeEEeeccccceeeeeecCCC-CeEEe
Confidence            999999999864                                        3447889999999999999998 68999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  267 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~  267 (387)
                      ++.|-.|++||-+.+ ..+...+.+|..-|.+++|+|.+.+.+++++.|++|++|.+..      ..+..++++|+..|+
T Consensus       115 sSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN  187 (794)
T KOG0276|consen  115 SSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVN  187 (794)
T ss_pred             cCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcc
Confidence            999999999998754 3578889999999999999999999999999999999999998      889999999999999


Q ss_pred             EEEEcCCC--CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          268 CVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       268 ~~~~~~~~--~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |+.+-+-|  ++ +++|++|..|+|||..+.               .++.++.||...|..+.|+|.-+.++        
T Consensus       188 ~Vdyy~~gdkpy-lIsgaDD~tiKvWDyQtk---------------~CV~TLeGHt~Nvs~v~fhp~lpiii--------  243 (794)
T KOG0276|consen  188 CVDYYTGGDKPY-LISGADDLTIKVWDYQTK---------------SCVQTLEGHTNNVSFVFFHPELPIII--------  243 (794)
T ss_pred             eEEeccCCCcce-EEecCCCceEEEeecchH---------------HHHHHhhcccccceEEEecCCCcEEE--------
Confidence            99998754  56 469999999999999985               57888999999999999999999877        


Q ss_pred             CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      ||+.||++|||+-.      +-++..++.-.-+.|++++-
T Consensus       244 sgsEDGTvriWhs~------Ty~lE~tLn~gleRvW~I~~  277 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSK------TYKLEKTLNYGLERVWCIAA  277 (794)
T ss_pred             EecCCccEEEecCc------ceehhhhhhcCCceEEEEee
Confidence            88999999999988      67777777766777887764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=242.04  Aligned_cols=309  Identities=17%  Similarity=0.258  Sum_probs=249.3

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+..|++.|.+++.+| +.+++|||+.|..-.+|+..++            .....+.+|.+ .|+++.|+.+|.+||
T Consensus        57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKD-SVt~~~FshdgtlLA  122 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKD-SVTCCSFSHDGTLLA  122 (399)
T ss_pred             eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCC------------cceeEecCCCC-ceEEEEEccCceEEE
Confidence            456678999999999999 9999999999999999999999            67788999999 589999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCC--CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      ||+-+|.|+||+..++........  .......-.........+..++.+..|..+.....+.+.+|..++++=.|.|+|
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG  202 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG  202 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence            999999999999998865544431  111111111122233345567888888888888889999999999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  260 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-  260 (387)
                       +.++++..||+|++||+.+++. ....-.......+++.++. .+..++.|+.++.+++-+..+      ++.+.... 
T Consensus       203 -Kr~~tgy~dgti~~Wn~ktg~p-~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~s------gKVv~~~n~  273 (399)
T KOG0296|consen  203 -KRILTGYDDGTIIVWNPKTGQP-LHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGS------GKVVNCNNG  273 (399)
T ss_pred             -ceEEEEecCceEEEEecCCCce-eEEecccccCcCCcccccc-ccceeEeccCCccEEEEcccc------ceEEEecCC
Confidence             8899999999999999999973 2222223345678888888 899999999999999988777      66555554 


Q ss_pred             -------cccceEEEEEEcC---CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          261 -------GHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       261 -------~~~~~i~~~~~~~---~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                             .++..+.++.+.|   .-+ |+|+|+-||+|.|||+...                .++....|..+|+.+.|-
T Consensus       274 ~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~----------------~~R~~c~he~~V~~l~w~  336 (399)
T KOG0296|consen  274 TVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS----------------TLRHICEHEDGVTKLKWL  336 (399)
T ss_pred             CCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEecccc----------------hhheeccCCCceEEEEEc
Confidence                   3455555665555   444 6899999999999999874                234446789999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      + ..+|+        ++..||.|+.||.+      +|+++.++.||..+|.+++.+|
T Consensus       337 ~-t~~l~--------t~c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  337 N-TDYLL--------TACANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             C-cchhe--------eeccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence            9 67888        77778999999999      8999999999999999999887

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.8e-37  Score=258.23  Aligned_cols=264  Identities=17%  Similarity=0.328  Sum_probs=214.6

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ++..+|...++|++|+| +|+++|||+.||.|+|||...+            -+..++..|+. .|+.+.|+..|+.+++
T Consensus       344 lKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts-~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTS-GVTAVQFTARGNVLLS  409 (893)
T ss_pred             eeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCC-ceEEEEEEecCCEEEE
Confidence            44568999999999999 9999999999999999999998            79999999998 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++-||+|+.||+........+..                                       .......|++..|.| .+
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~---------------------------------------P~p~QfscvavD~sG-el  449 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTS---------------------------------------PEPIQFSCVAVDPSG-EL  449 (893)
T ss_pred             eecCCeEEeeeecccceeeeecC---------------------------------------CCceeeeEEEEcCCC-CE
Confidence            99999999999986544322211                                       122356788999988 67


Q ss_pred             EEEecCCC-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          185 FCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       185 l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      +..|+.|. .|++|++++++  .+..+.+|+++|.+++|+| .++.|+++|.|.+|++||+-..     ...+.+++ +.
T Consensus       450 V~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s-----~~~vEtl~-i~  520 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSS-----SGTVETLE-IR  520 (893)
T ss_pred             EEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeecc-----CceeeeEe-ec
Confidence            77777765 49999999999  7888999999999999999 9999999999999999999862     23444554 67


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC-----CCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-----YPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      ..+..++|+|+|+. +|++.-||.|.+||.....+..........     ................+.+++++||..++ 
T Consensus       521 sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il-  598 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL-  598 (893)
T ss_pred             cceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE-
Confidence            78999999999997 578889999999999875544322221111     11122222334456899999999999999 


Q ss_pred             EecCCCCCCCCCceEEEEecCC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                             +||..+.|+||++.+
T Consensus       599 -------AgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  599 -------AGGESNSICIYDVPE  613 (893)
T ss_pred             -------ecCCcccEEEEECch
Confidence                   888999999999983

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.2e-36  Score=250.18  Aligned_cols=267  Identities=25%  Similarity=0.461  Sum_probs=227.2

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      +.+|.++|++++|+| ++++|++++.||.|++|++.+.            .....+..|.. .+..+.|+|+++++++++
T Consensus         5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~   70 (289)
T cd00200           5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETG------------ELLRTLKGHTG-PVRDVAASADGTYLASGS   70 (289)
T ss_pred             hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCC------------CcEEEEecCCc-ceeEEEECCCCCEEEEEc
Confidence            348999999999999 7899999999999999999987            56677788876 678999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .||.|++|++.+.                                        +....+..|...+.++.|++++ .+++
T Consensus        71 ~~~~i~i~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~~~~~~-~~~~  109 (289)
T cd00200          71 SDKTIRLWDLETG----------------------------------------ECVRTLTGHTSYVSSVAFSPDG-RILS  109 (289)
T ss_pred             CCCeEEEEEcCcc----------------------------------------cceEEEeccCCcEEEEEEcCCC-CEEE
Confidence            9999999999753                                        1225566788899999999996 7888


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                      +++.++.|.+||+++.+  ....+..|...+.+++|+| ++.++++++.||.|++||++.      .+.+..+..|...+
T Consensus       110 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i  180 (289)
T cd00200         110 SSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT------GKCVATLTGHTGEV  180 (289)
T ss_pred             EecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc------cccceeEecCcccc
Confidence            88889999999998766  4566667889999999999 788888888899999999997      77888888898899


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .++.|+|+++.+ ++++.|+.|++||++..               .....+..|...+.++.|+|++.+++        +
T Consensus       181 ~~~~~~~~~~~l-~~~~~~~~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~~~--------~  236 (289)
T cd00200         181 NSVAFSPDGEKL-LSSSSDGTIKLWDLSTG---------------KCLGTLRGHENGVNSVAFSPDGYLLA--------S  236 (289)
T ss_pred             ceEEECCCcCEE-EEecCCCcEEEEECCCC---------------ceecchhhcCCceEEEEEcCCCcEEE--------E
Confidence            999999999865 46777999999999874               23444557888999999999965554        4


Q ss_pred             CCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          347 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       347 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++.||.|++|++.      .++++..+..|...|.+++|+|
T Consensus       237 ~~~~~~i~i~~~~------~~~~~~~~~~~~~~i~~~~~~~  271 (289)
T cd00200         237 GSEDGTIRVWDLR------TGECVQTLSGHTNSVTSLAWSP  271 (289)
T ss_pred             EcCCCcEEEEEcC------CceeEEEccccCCcEEEEEECC
Confidence            4456999999999      6778888889999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-36  Score=261.12  Aligned_cols=272  Identities=20%  Similarity=0.360  Sum_probs=237.1

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -+..|..++|+| ...+++++--+|.|++||.+-+            ..+..+..|.+ +|..++|+|++.++++|+.|.
T Consensus         8 kSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdG-pVRgv~FH~~qplFVSGGDDy   73 (1202)
T KOG0292|consen    8 KSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDG-PVRGVDFHPTQPLFVSGGDDY   73 (1202)
T ss_pred             ccccccceecCC-CCCEEEEeecCceeeeehhhhh------------hHHhhhhccCC-ccceeeecCCCCeEEecCCcc
Confidence            467899999999 8889999999999999999988            78888999998 899999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|++|+..+.+                                        ++.++.+|.+-|..+.|++.. -+++++|
T Consensus        74 kIkVWnYk~rr----------------------------------------clftL~GHlDYVRt~~FHhey-PWIlSAS  112 (1202)
T KOG0292|consen   74 KIKVWNYKTRR----------------------------------------CLFTLLGHLDYVRTVFFHHEY-PWILSAS  112 (1202)
T ss_pred             EEEEEecccce----------------------------------------ehhhhccccceeEEeeccCCC-ceEEEcc
Confidence            99999998643                                        447788999999999999998 6899999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC----C--------------
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN----G--------------  251 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~--------------  251 (387)
                      .|.+|+||+..+.+  ++..+.+|...|.|.+|+| ...+++++|.|.+||+||+......    .              
T Consensus       113 DDQTIrIWNwqsr~--~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d  189 (1202)
T KOG0292|consen  113 DDQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD  189 (1202)
T ss_pred             CCCeEEEEeccCCc--eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence            99999999999988  7889999999999999999 9999999999999999998653210    0              


Q ss_pred             -C----CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          252 -V----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       252 -~----~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                       .    ....+.+++|+..|+-++|+|.-+ ++++|++|..|++|.+...+.-             .+.+..+|...|++
T Consensus       190 Lfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaW-------------EvDtcrgH~nnVss  255 (1202)
T KOG0292|consen  190 LFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW-------------EVDTCRGHYNNVSS  255 (1202)
T ss_pred             hcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccce-------------eehhhhcccCCcce
Confidence             0    112245689999999999999998 6789999999999999874221             24556899999999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +-|+|..+.++        +.|.|++|+|||+.      ..+.+++++...+.-+.++-+|
T Consensus       256 vlfhp~q~lIl--------SnsEDksirVwDm~------kRt~v~tfrrendRFW~laahP  302 (1202)
T KOG0292|consen  256 VLFHPHQDLIL--------SNSEDKSIRVWDMT------KRTSVQTFRRENDRFWILAAHP  302 (1202)
T ss_pred             EEecCccceeE--------ecCCCccEEEEecc------cccceeeeeccCCeEEEEEecC
Confidence            99999888777        77888999999999      7888999988888888888877

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.1e-38  Score=241.93  Aligned_cols=251  Identities=22%  Similarity=0.459  Sum_probs=210.8

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.||+|.|.|+.|   +.+++++|++|.+|+|||++++            +++.++-+|.+ .|..+.|+  +.++
T Consensus       229 c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tg------------e~l~tlihHce-aVLhlrf~--ng~m  290 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTG------------EPLNTLIHHCE-AVLHLRFS--NGYM  290 (499)
T ss_pred             HHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCC------------chhhHHhhhcc-eeEEEEEe--CCEE
Confidence            34567799999999998   4579999999999999999999            78888889988 68899995  5799


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|.++.+||+..+.                                     .......+.+|...|+.+.|..   
T Consensus       291 vtcSkDrsiaVWdm~sps-------------------------------------~it~rrVLvGHrAaVNvVdfd~---  330 (499)
T KOG0281|consen  291 VTCSKDRSIAVWDMASPT-------------------------------------DITLRRVLVGHRAAVNVVDFDD---  330 (499)
T ss_pred             EEecCCceeEEEeccCch-------------------------------------HHHHHHHHhhhhhheeeecccc---
Confidence            999999999999997542                                     1223467789999999999963   


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      +++++++.|.+|++|++.+.+  .++.+.+|...|-|+++   .++++++|+.|.+|++||+..      +.+++.+++|
T Consensus       331 kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------G~cLRvLeGH  399 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------GACLRVLEGH  399 (499)
T ss_pred             ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------cHHHHHHhch
Confidence            589999999999999999998  78999999999999988   679999999999999999999      9999999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      +.-|.++.|...  . +++|+.||+|+|||+.....+...      ...-++..+..|.+.|..+.|..   +-++    
T Consensus       400 EeLvRciRFd~k--r-IVSGaYDGkikvWdl~aaldpra~------~~~~Cl~~lv~hsgRVFrLQFD~---fqIv----  463 (499)
T KOG0281|consen  400 EELVRCIRFDNK--R-IVSGAYDGKIKVWDLQAALDPRAP------ASTLCLRTLVEHSGRVFRLQFDE---FQII----  463 (499)
T ss_pred             HHhhhheeecCc--e-eeeccccceEEEEecccccCCccc------ccchHHHhhhhccceeEEEeecc---eEEE----
Confidence            999999999644  3 569999999999999875443211      11235666778999999999953   3455    


Q ss_pred             CCCCCCCCceEEEEecCCC
Q 016547          343 DCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~  361 (387)
                         +++.|.+|.|||+.+.
T Consensus       464 ---sssHddtILiWdFl~~  479 (499)
T KOG0281|consen  464 ---SSSHDDTILIWDFLNG  479 (499)
T ss_pred             ---eccCCCeEEEEEcCCC
Confidence               4555699999999853

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.7e-36  Score=233.78  Aligned_cols=280  Identities=21%  Similarity=0.417  Sum_probs=221.4

Q ss_pred             eeeeecCCCcEEEEEecCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           24 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .++..||.++|.+++|...+  ...+++++.|.++++|.++.++...        +......||.. .|-++...++|..
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~--------~~~~~~~GHk~-~V~sVsv~~sgtr  207 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV--------KALKVCRGHKR-SVDSVSVDSSGTR  207 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh--------hHHhHhccccc-ceeEEEecCCCCe
Confidence            45677999999988876533  2369999999999999998875433        33444559998 6899999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++|+.|.+|.+|+....... .....              ..................++..+.+|.++|.++.|++. 
T Consensus       208 ~~SgS~D~~lkiWs~~~~~~~-~~E~~--------------s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-  271 (423)
T KOG0313|consen  208 FCSGSWDTMLKIWSVETDEED-ELESS--------------SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-  271 (423)
T ss_pred             EEeecccceeeecccCCCccc-ccccc--------------chhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-
Confidence            999999999999994321110 00000              00111111122233455678889999999999999984 


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       ..+.+++.|.+|+.||+.++.  ....+ .....++++.++| ..++|++|+.|..|++||.|+...   ....+++.+
T Consensus       272 -~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g---s~v~~s~~g  343 (423)
T KOG0313|consen  272 -TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG---SVVSQSLIG  343 (423)
T ss_pred             -CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC---ceeEEeeec
Confidence             579999999999999999988  33333 3467899999999 999999999999999999998642   445678899


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...|.++.|+|...++|++++.|+++++||++....              .++.+.+|...|.++.|+. +..++    
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--------------plydI~~h~DKvl~vdW~~-~~~Iv----  404 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--------------PLYDIAGHNDKVLSVDWNE-GGLIV----  404 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--------------cceeeccCCceEEEEeccC-CceEE----
Confidence            9999999999999999999999999999999998632              4778899999999999986 44566    


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                          +||.|++|+|+.-.
T Consensus       405 ----SGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  405 ----SGGADNKLRIFKGS  418 (423)
T ss_pred             ----eccCcceEEEeccc
Confidence                99999999999865

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.2e-35  Score=232.45  Aligned_cols=275  Identities=20%  Similarity=0.374  Sum_probs=228.3

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC---C
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---P  100 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~---~  100 (387)
                      ...-+.|.+-|.++.-.   ++.++||+.||.+++||....             ....+.||.+ +|.+++|.-.+   .
T Consensus        98 pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk-------------~~~~~~Ght~-~ik~v~~v~~n~~~~  160 (423)
T KOG0313|consen   98 PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGK-------------SIKTIVGHTG-PIKSVAWVIKNSSSC  160 (423)
T ss_pred             ccccccchhhhhhhccc---CceEEEeecCCeeEEEecCCc-------------eEEEEecCCc-ceeeeEEEecCCccc
Confidence            44556788888888764   579999999999999998764             7788999998 78888875433   3


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .+++++.|.++++|.++.+....                                    +.+..-.+|...|.++...++
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~------------------------------------~~~~~~~GHk~~V~sVsv~~s  204 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKV------------------------------------KALKVCRGHKRSVDSVSVDSS  204 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhh------------------------------------hHHhHhcccccceeEEEecCC
Confidence            59999999999999998653321                                    222334599999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCC-----------------------CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          181 SAQEFCSVGDDSCLILWDARVG-----------------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                      + ..+++|+.|.+|.+|+..+.                       ....+..+.+|..+|.++.|++  ...+.+++.|.
T Consensus       205 g-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDH  281 (423)
T KOG0313|consen  205 G-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDH  281 (423)
T ss_pred             C-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccc
Confidence            9 88999999999999993221                       1124556789999999999997  77899999999


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      +|+.||+.+      +..+.++.+ ...++++..+|... |+++|+.|..|++||.+.+...            -...++
T Consensus       282 TIk~WDlet------g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs------------~v~~s~  341 (423)
T KOG0313|consen  282 TIKVWDLET------GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGS------------VVSQSL  341 (423)
T ss_pred             eEEEEEeec------ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCc------------eeEEee
Confidence            999999999      888888774 67799999999887 6789999999999999987443            346778


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      .+|...|.++.|+|.+.++++++|.|       |++++||++.     ...++..+.+|.+.|.+++|.
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~D-------~t~klWDvRS-----~k~plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSYD-------NTVKLWDVRS-----TKAPLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEecC-------CeEEEEEecc-----CCCcceeeccCCceEEEEecc
Confidence            99999999999999999999966555       9999999994     344999999999999999885

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.7e-36  Score=252.18  Aligned_cols=259  Identities=20%  Similarity=0.343  Sum_probs=220.7

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s  104 (387)
                      ...||...|.++.... .+.+|+||+.|.++++|.++.+..        ...++....+|+. .|.+++++..+ .+|++
T Consensus       360 ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~--------~~~~~a~~~gH~~-svgava~~~~~asffvs  429 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCS--------KSLCVAQANGHTN-SVGAVAGSKLGASFFVS  429 (775)
T ss_pred             EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcc--------hhhhhhhhccccc-ccceeeecccCccEEEE
Confidence            5668999999999555 668999999999999998854421        1246677889998 68999997754 58999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      +|.|+++++|++........                               ............|...|++++++|++ .+
T Consensus       430 vS~D~tlK~W~l~~s~~~~~-------------------------------~~~~~~~~t~~aHdKdIN~Vaia~nd-kL  477 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAF-------------------------------PIVLTCRYTERAHDKDINCVAIAPND-KL  477 (775)
T ss_pred             ecCCceEEEecCCCcccccc-------------------------------cceehhhHHHHhhcccccceEecCCC-ce
Confidence            99999999999976211110                               01112223456799999999999998 89


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      ++||+.|.+.++|++....  ....+.+|...|.++.|+| ..+.++++|.|.+|+||.+.+      ..++.++.+|..
T Consensus       478 iAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~~  548 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHTS  548 (775)
T ss_pred             EEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc------ceeeeeecCccc
Confidence            9999999999999999555  7889999999999999999 899999999999999999999      999999999999


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      .|..+.|-.++..+ ++++.||.|++|++.+.               .+..++.+|++.|++++-+|...+++       
T Consensus       549 aVlra~F~~~~~ql-iS~~adGliKlWnikt~---------------eC~~tlD~H~DrvWaL~~~~~~~~~~-------  605 (775)
T KOG0319|consen  549 AVLRASFIRNGKQL-ISAGADGLIKLWNIKTN---------------ECEMTLDAHNDRVWALSVSPLLDMFV-------  605 (775)
T ss_pred             eeEeeeeeeCCcEE-EeccCCCcEEEEeccch---------------hhhhhhhhccceeEEEeecCccceeE-------
Confidence            99999999999975 59999999999999986               56788899999999999999999776       


Q ss_pred             CCCCCCceEEEEecC
Q 016547          345 DSTGGGGTLQIWRMS  359 (387)
Q Consensus       345 ~tg~~dg~i~iw~~~  359 (387)
                       |||.||.|.+|.=.
T Consensus       606 -tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  606 -TGGGDGRIIFWKDV  619 (775)
T ss_pred             -ecCCCeEEEEeecC
Confidence             89999999999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.7e-34  Score=270.30  Aligned_cols=287  Identities=19%  Similarity=0.233  Sum_probs=217.2

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSG  105 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~  105 (387)
                      ...|.+.|.+++|+| ++++||+|+.|+.|+|||+........    ....+...+.++.  .|.+++|++ ++.+|+++
T Consensus       479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~--~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVELASRS--KLSGICWNSYIKSQVASS  551 (793)
T ss_pred             ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEecccC--ceeeEEeccCCCCEEEEE
Confidence            345999999999999 889999999999999999865311100    0112333444443  588999987 47899999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.||+|++||+.++.                                        .+..+.+|...|++++|+|.++.+|
T Consensus       552 ~~Dg~v~lWd~~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        552 NFEGVVQVWDVARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             eCCCeEEEEECCCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEE
Confidence            999999999997532                                        2356678999999999997444889


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++|+.||.|++||++++.  ....+.. ...+.++.|++.++.+|++|+.||.|++||++..     ..++..+.+|...
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~  663 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGV--SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKT  663 (793)
T ss_pred             EEEcCCCEEEEEECCCCc--EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCC
Confidence            999999999999998876  4445543 4679999996547999999999999999999872     2356778899999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |.++.|. ++.+ +++++.|+.|++||++.....         .....+..+.+|...+..++|+|++.+++        
T Consensus       664 V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~---------~~~~~l~~~~gh~~~i~~v~~s~~~~~la--------  724 (793)
T PLN00181        664 VSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISG---------INETPLHSFMGHTNVKNFVGLSVSDGYIA--------  724 (793)
T ss_pred             EEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccc---------cCCcceEEEcCCCCCeeEEEEcCCCCEEE--------
Confidence            9999997 5564 679999999999999853211         01134667889999999999999998777        


Q ss_pred             CCCCCceEEEEecCCCccc-----ccchhh--hhhhccCceEEEeeecC
Q 016547          346 STGGGGTLQIWRMSDLIYR-----PQDEVL--AELEKFKAHVISCTSKP  387 (387)
Q Consensus       346 tg~~dg~i~iw~~~~~~~~-----~~~~~~--~~~~~~~~~v~~~~f~P  387 (387)
                      +|+.|+.|++|+.......     .....+  .....|...|.+++|+|
T Consensus       725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence            7778899999997632100     000011  12244667899999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=235.21  Aligned_cols=278  Identities=19%  Similarity=0.313  Sum_probs=223.0

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT   98 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~   98 (387)
                      .|......+..|.++|+-+.|++ +|++||+++.|.+..||++.....         .+...++.+|.. +|.-+.||||
T Consensus       212 ip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~---------~kl~~tlvgh~~-~V~yi~wSPD  280 (519)
T KOG0293|consen  212 IPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVH---------FKLKKTLVGHSQ-PVSYIMWSPD  280 (519)
T ss_pred             CCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcc---------eeeeeeeecccC-ceEEEEECCC
Confidence            33444455567999999999999 999999999999999999876621         256788999998 7999999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      .++|++|+.|..+.+||+.++.....+.                                       .++...+.+++|.
T Consensus       281 dryLlaCg~~e~~~lwDv~tgd~~~~y~---------------------------------------~~~~~S~~sc~W~  321 (519)
T KOG0293|consen  281 DRYLLACGFDEVLSLWDVDTGDLRHLYP---------------------------------------SGLGFSVSSCAWC  321 (519)
T ss_pred             CCeEEecCchHheeeccCCcchhhhhcc---------------------------------------cCcCCCcceeEEc
Confidence            9999999999999999998765432221                                       1245778999999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      ||+ ..+++|+.|+.+..||++...   .....+ ....|.+++..+ +|.++++.+.|..|++|+..+      .....
T Consensus       322 pDg-~~~V~Gs~dr~i~~wdlDgn~---~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~  390 (519)
T KOG0293|consen  322 PDG-FRFVTGSPDRTIIMWDLDGNI---LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRG  390 (519)
T ss_pred             cCC-ceeEecCCCCcEEEecCCcch---hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhc
Confidence            999 889999999999999998655   222222 235689999999 999999999999999999987      33333


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC--eeEEEEccCCCe
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK--VVDFHWNASDPW  335 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~  335 (387)
                      .+. .+.+|+++..|.++++.| +.-.+..+++||+...               .++..+.||...  +..-+|.-.+..
T Consensus       391 lis-e~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~---------------~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  391 LIS-EEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEEN---------------KLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             ccc-ccCceeEEEEcCCCcEEE-EEcccCeeEEeecchh---------------hHHHHhhcccccceEEEeccCCCCcc
Confidence            333 457899999999999765 5566889999999964               345566777653  444456655545


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +++       +|+.|+.|+||+..      +++++.++.||...|++|+++|
T Consensus       454 fia-------SGSED~kvyIWhr~------sgkll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  454 FIA-------SGSEDSKVYIWHRI------SGKLLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             eEE-------ecCCCceEEEEEcc------CCceeEeecCCcceeeEEecCC
Confidence            555       77777999999999      8999999999999999999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.4e-34  Score=232.76  Aligned_cols=283  Identities=17%  Similarity=0.285  Sum_probs=227.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ...-+|..+++-.+|+| .|.++|+|...|.|+|||....+.          -...+++.-.+ +|..|+|+.++++|+.
T Consensus        53 ~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~h----------iLKnef~v~aG-~I~Di~Wd~ds~RI~a  120 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEH----------ILKNEFQVLAG-PIKDISWDFDSKRIAA  120 (603)
T ss_pred             eeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcce----------eeeeeeeeccc-ccccceeCCCCcEEEE
Confidence            34557999999999999 799999999999999999877522          22334555555 7999999999999987


Q ss_pred             ecCC----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          105 GGKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       105 ~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .++.    |.+.+||.-+                                          ....+.+|...|+++.|-|.
T Consensus       121 vGEGrerfg~~F~~DSG~------------------------------------------SvGei~GhSr~ins~~~Kps  158 (603)
T KOG0318|consen  121 VGEGRERFGHVFLWDSGN------------------------------------------SVGEITGHSRRINSVDFKPS  158 (603)
T ss_pred             EecCccceeEEEEecCCC------------------------------------------ccceeeccceeEeeeeccCC
Confidence            7642    3566777543                                          23567899999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      .+..+++|+.|+.|.+|+=.-.+  ....+..|..-|+++.|+| ++.++++.+.||.|.+||-.+      ++.+.++.
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt------ge~vg~l~  229 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT------GEKVGELE  229 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC------ccEEEEec
Confidence            99999999999999999754444  4556778999999999999 999999999999999999999      99999998


Q ss_pred             ---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC----------------------------CC
Q 016547          261 ---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----------------------------NY  309 (387)
Q Consensus       261 ---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------------------------~~  309 (387)
                         +|.+.|.+++|+||+.. |++++.|.+++|||+.......+......                            ..
T Consensus       230 ~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~  308 (603)
T KOG0318|consen  230 DSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS  308 (603)
T ss_pred             CCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence               89999999999999997 56999999999999988543322211110                            01


Q ss_pred             CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh-hccCceEEEeee
Q 016547          310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTS  385 (387)
Q Consensus       310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~f  385 (387)
                      .......+.+|...|++++.+|++.+++        +|+.||.|.-|+..      ++..-+.. ++|...|.+++.
T Consensus       309 d~~~~~~i~GHnK~ITaLtv~~d~~~i~--------SgsyDG~I~~W~~~------~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  309 DPSVLKVISGHNKSITALTVSPDGKTIY--------SGSYDGHINSWDSG------SGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             CCChhheecccccceeEEEEcCCCCEEE--------eeccCceEEEEecC------CccccccccccccceEEEEee
Confidence            2224567789999999999999999988        89999999999999      55544433 567777777764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.2e-35  Score=220.99  Aligned_cols=247  Identities=21%  Similarity=0.381  Sum_probs=208.2

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLS  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s  104 (387)
                      ...+|.+.|..+.|.+ +++.|++++.|.+|+.||++++            +..+.+++|.+ .|+++.-+.-|. ++.+
T Consensus        85 ~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG------------~~~rk~k~h~~-~vNs~~p~rrg~~lv~S  150 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETG------------KRIRKHKGHTS-FVNSLDPSRRGPQLVCS  150 (338)
T ss_pred             eeccccceeEeeeecc-CCCEEEEecCCceEEEEecccc------------eeeehhccccc-eeeecCccccCCeEEEe
Confidence            3449999999999999 9999999999999999999999            78889999998 788988665565 4568


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.||++++||+++......                                        + ..+-+++++.|..++ ..
T Consensus       151 gsdD~t~kl~D~R~k~~~~t----------------------------------------~-~~kyqltAv~f~d~s-~q  188 (338)
T KOG0265|consen  151 GSDDGTLKLWDIRKKEAIKT----------------------------------------F-ENKYQLTAVGFKDTS-DQ  188 (338)
T ss_pred             cCCCceEEEEeecccchhhc----------------------------------------c-ccceeEEEEEecccc-cc
Confidence            89999999999986533221                                        1 224578999999888 67


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-  263 (387)
                      +++|+-|+.|++||++...  ....+.+|...|+.+..+| .+.++.+-+.|.++++||++.....  .+++..+.+|. 
T Consensus       189 v~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~h  263 (338)
T KOG0265|consen  189 VISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHIH  263 (338)
T ss_pred             eeeccccCceeeeccccCc--ceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCC--CceEEEeecchh
Confidence            9999999999999999888  7888999999999999999 9999999999999999999964331  34477777654 


Q ss_pred             ---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          264 ---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       264 ---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                         ......+|+|++.. +.+|+.|..+++||....               .++..+.||.+.|+.++|+|..+.++   
T Consensus       264 nfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp~e~iil---  324 (338)
T KOG0265|consen  264 NFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHPTEPIIL---  324 (338)
T ss_pred             hhhhhcceeeccCCCCc-cccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecCCCcEEE---
Confidence               33567899999997 578999999999998874               56888999999999999999999877   


Q ss_pred             cCCCCCCCCCceEEEEe
Q 016547          341 SDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~  357 (387)
                           +++.|.+|++=.
T Consensus       325 -----s~~sdk~i~lge  336 (338)
T KOG0265|consen  325 -----SCSSDKTIYLGE  336 (338)
T ss_pred             -----EeccCceeEeec
Confidence                 677778988633

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-36  Score=231.57  Aligned_cols=281  Identities=15%  Similarity=0.246  Sum_probs=237.0

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      +.....++..+.+.|..|+| ++++|++|+.||.|.+||..+++..+.+.    .+....+-.+.+ +|.|+.|+.|...
T Consensus       204 l~r~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLk----YQAqd~fMMmd~-aVlci~FSRDsEM  277 (508)
T KOG0275|consen  204 LARSIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLK----YQAQDNFMMMDD-AVLCISFSRDSEM  277 (508)
T ss_pred             hhhheecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhh----hhhhcceeeccc-ceEEEeecccHHH
Confidence            44556678899999999999 99999999999999999999996655432    123334555666 7999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++|+.||.|++|.++++.+...++                                       +.|+..|+|+.|+.|+
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFd---------------------------------------rAHtkGvt~l~FSrD~  318 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFD---------------------------------------RAHTKGVTCLSFSRDN  318 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhh---------------------------------------hhhccCeeEEEEccCc
Confidence            9999999999999999876653322                                       3799999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       ..+++++.|.++++.-+++++  +++.+.+|.+.|+...|.+ +|..+++++.||+|++|+..+      ..++.+++.
T Consensus       319 -SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~  388 (508)
T KOG0275|consen  319 -SQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT------TECLSTFKP  388 (508)
T ss_pred             -chhhcccccceEEEeccccch--hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc------hhhhhhccC
Confidence             779999999999999999999  7889999999999999999 999999999999999999999      888888864


Q ss_pred             --ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc---CCCCeeEEEEccCCCeE
Q 016547          262 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPWT  336 (387)
Q Consensus       262 --~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l  336 (387)
                        .+.+|+++-.-|.++.-++.+...+++.|-++..                +.+..+..   ..+...+...+|.|.++
T Consensus       389 ~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----------------QvVrsfsSGkREgGdFi~~~lSpkGewi  452 (508)
T KOG0275|consen  389 LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----------------QVVRSFSSGKREGGDFINAILSPKGEWI  452 (508)
T ss_pred             CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----------------eEEeeeccCCccCCceEEEEecCCCcEE
Confidence              4567889988888766677888899999999876                23333332   23456677899999998


Q ss_pred             EEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .        +.|.|+.++-|.+.      +|.+-.++..|...|..++-+|
T Consensus       453 Y--------cigED~vlYCF~~~------sG~LE~tl~VhEkdvIGl~HHP  489 (508)
T KOG0275|consen  453 Y--------CIGEDGVLYCFSVL------SGKLERTLPVHEKDVIGLTHHP  489 (508)
T ss_pred             E--------EEccCcEEEEEEee------cCceeeeeecccccccccccCc
Confidence            8        77788999999999      8999999999999998888777

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.7e-35  Score=253.60  Aligned_cols=248  Identities=23%  Similarity=0.477  Sum_probs=211.0

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEec-cCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+|...|++++|+| ++.++++|+.|++|+|||+ +.+            ..+.++.+|.. .|++++|+|+++++++|+
T Consensus       200 ~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~------------~~~~~l~gH~~-~v~~~~f~p~g~~i~Sgs  265 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG------------RNLKTLKGHST-YVTSVAFSPDGNLLVSGS  265 (456)
T ss_pred             cccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC------------eEEEEecCCCC-ceEEEEecCCCCEEEEec
Confidence            68999999999999 8899999999999999999 444            67889999998 799999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .|++|++||++++                                        ++...+.+|.+.|++++|++++ ++++
T Consensus       266 ~D~tvriWd~~~~----------------------------------------~~~~~l~~hs~~is~~~f~~d~-~~l~  304 (456)
T KOG0266|consen  266 DDGTVRIWDVRTG----------------------------------------ECVRKLKGHSDGISGLAFSPDG-NLLV  304 (456)
T ss_pred             CCCcEEEEeccCC----------------------------------------eEEEeeeccCCceEEEEECCCC-CEEE
Confidence            9999999999853                                        3457889999999999999999 8899


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCC--CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++.|+.|++||+.++...+...+..+..  ++++++|+| ++.++++++.|+.+++||++.      +..+..+.+|..
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~------~~~~~~~~~~~~  377 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRS------GKSVGTYTGHSN  377 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccC------CcceeeecccCC
Confidence            99999999999999887322234444444  499999999 999999999999999999998      888888888877


Q ss_pred             e---EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC-CCCeeEEEEccCCCeEEEEe
Q 016547          265 A---VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       265 ~---i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~s~  340 (387)
                      .   +.+...++.+++ +.+|+.|+.|++||+...               ..+..+.+| ...+..++|+|..++++ +.
T Consensus       378 ~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~~-s~  440 (456)
T KOG0266|consen  378 LVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLIA-SS  440 (456)
T ss_pred             cceeEecccccCCCCe-EEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCeee-ec
Confidence            4   445556778886 569999999999999974               235566788 88999999999877665 22


Q ss_pred             cCCCCCCCCCceEEEEecC
Q 016547          341 SDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~  359 (387)
                           +...|+.+++|..+
T Consensus       441 -----s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  441 -----SFEGDGLIRLWKYD  454 (456)
T ss_pred             -----CcCCCceEEEecCC
Confidence                 23378999999876

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=222.05  Aligned_cols=300  Identities=13%  Similarity=0.174  Sum_probs=230.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      +.+.||..+++.+.|+. +|++|.+++.|.+..||-..++            ..+-++.||++ .|+|++.+.+.+++++
T Consensus         4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtG-avW~~Did~~s~~liT   69 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTG-AVWCCDIDWDSKHLIT   69 (327)
T ss_pred             cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCc-eEEEEEecCCcceeee
Confidence            45669999999999999 9999999999999999998888            67889999998 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccC---CCCCCceeccCCCCC---CCCCCCCC-------CCCCCCceeecCCCCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKS---AGSSGSIIKQSPKPG---DGNDKAAD-------GPSVGPRGIYNGHEDT  171 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~  171 (387)
                      |+.|.++++||++++++...+.......   ....+.+........   ...+.+.+       ....++...+..+...
T Consensus        70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk  149 (327)
T KOG0643|consen   70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK  149 (327)
T ss_pred             ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence            9999999999999998877766544331   122222222222211   12222222       2355667788888899


Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      ++.+-|.|-+ ..+++|..||.|..||+++++. .+.....|...|+.|++++ +..++++++.|.+-++||.++     
T Consensus       150 it~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~t-----  221 (327)
T KOG0643|consen  150 ITSALWGPLG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRT-----  221 (327)
T ss_pred             eeeeeecccC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecccCccceeeeccc-----
Confidence            9999999998 8899999999999999999863 4556678999999999999 999999999999999999999     


Q ss_pred             CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                       ...+.++. .+.+|++.+++|...+++..|+.+.. |.-=+.+.++-...+ .+.  --.+.+....+|-++|++++|+
T Consensus       222 -l~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF-yh~--i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  222 -LEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF-YHL--IFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             -eeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhH-HHH--HHHHHhccccccccCcceeEEC
Confidence             77888887 57899999999988877655554432 111111111000000 000  0002345678999999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      |+|....        +||.||.||+..+.
T Consensus       297 PdGksYs--------SGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 PDGKSYS--------SGGEDGYVRLHHFD  317 (327)
T ss_pred             CCCcccc--------cCCCCceEEEEEec
Confidence            9999877        99999999998776

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.5e-33  Score=244.60  Aligned_cols=288  Identities=18%  Similarity=0.292  Sum_probs=209.9

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCC-CCCeEEEeccCCCceEEEEECC-CCCEEEEec
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATN-SRPDLILTGHQDNAEFALAMCP-TEPYVLSGG  106 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~  106 (387)
                      .|-..|+...+++ ++..+++++.+.....|+...+........... ......+.+|.+ .|++++|+| ++++|++|+
T Consensus        18 ~~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         18 RHFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             cceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEcCCCCCEEEEEe
Confidence            3445566666666 555567777777778887655422111110000 011235789987 799999999 889999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .|++|++||+.+.....                                 ....++..+.+|...|.+++|+|++.++|+
T Consensus        96 ~DgtIkIWdi~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             CCCEEEEEecCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEE
Confidence            99999999997532110                                 012345678899999999999998757899


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce-
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-  265 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-  265 (387)
                      +++.|+.|++||+++++  ....+..|...|.+++|+| ++.+|++++.|+.|++||+++      ++.+.++.+|.+. 
T Consensus       143 Sgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~  213 (493)
T PTZ00421        143 SAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAK  213 (493)
T ss_pred             EEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCc
Confidence            99999999999999877  5667788999999999999 999999999999999999998      8888888888765 


Q ss_pred             EEEEEEcCCCCeeEEEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEec
Q 016547          266 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      +..+.|.+++..++++|   +.|+.|++||+++...+.              .... .+...+....|++++..+++++.
T Consensus       214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--------------~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--------------STVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--------------eEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            45678999887666544   358999999998754321              1112 22345666778999988874332


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f~P  387 (387)
                             .|+.|++||+.      .++++..... +..++..++|.|
T Consensus       280 -------gDg~Iriwdl~------~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        280 -------GEGNIRCFELM------NERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             -------CCCeEEEEEee------CCceEEEeeccCCCCCcceEecc
Confidence                   36999999999      5555544332 445677777765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=232.81  Aligned_cols=266  Identities=18%  Similarity=0.307  Sum_probs=222.3

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      ...+.|.+++|+|..+.-+|+.+.- .+.||+..+.            .....+.-..+ .|.+++|-.||++|+.|...
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~------------~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~s   89 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTR------------SVRKTFSRFKD-VVYSVDFRSDGRLLAAGDES   89 (487)
T ss_pred             cccCcceeEecCCCCCCceEEeccc-EEEEEecchh------------hhhhhHHhhcc-ceeEEEeecCCeEEEccCCc
Confidence            3468899999999777667766554 6999998887            34444444444 58999999999999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.|+++|+.+.                                        ..+..+.+|+.++..+.|+|+++.+|++|
T Consensus        90 G~V~vfD~k~r----------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   90 GHVKVFDMKSR----------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             CcEEEeccccH----------------------------------------HHHHHHhhccCceeEEEecccCCeEEEec
Confidence            99999996542                                        12366789999999999999998999999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      +.|+.+++||+.+..  ....+.+|+..|.|.+|+|.++.++++|+.||.|++||++..     ...+.++. |+.+|..
T Consensus       130 sDd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----~~~v~eln-hg~pVe~  201 (487)
T KOG0310|consen  130 SDDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----TSRVVELN-HGCPVES  201 (487)
T ss_pred             CCCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-----CceeEEec-CCCceee
Confidence            999999999999887  466788999999999999977789999999999999999983     36777777 9999999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                      +.+-|.|. ++|+++ ...++|||+..+++.              +.....|...|+++.+..++..|+        +||
T Consensus       202 vl~lpsgs-~iasAg-Gn~vkVWDl~~G~ql--------------l~~~~~H~KtVTcL~l~s~~~rLl--------S~s  257 (487)
T KOG0310|consen  202 VLALPSGS-LIASAG-GNSVKVWDLTTGGQL--------------LTSMFNHNKTVTCLRLASDSTRLL--------SGS  257 (487)
T ss_pred             EEEcCCCC-EEEEcC-CCeEEEEEecCCcee--------------hhhhhcccceEEEEEeecCCceEe--------ecc
Confidence            99999988 466776 567999999976543              334455999999999999999998        899


Q ss_pred             CCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          349 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      -|+.|++||+.      +-+.+..+. ..++|.+++.+|
T Consensus       258 LD~~VKVfd~t------~~Kvv~s~~-~~~pvLsiavs~  289 (487)
T KOG0310|consen  258 LDRHVKVFDTT------NYKVVHSWK-YPGPVLSIAVSP  289 (487)
T ss_pred             cccceEEEEcc------ceEEEEeee-cccceeeEEecC
Confidence            99999999988      566666665 678999998887

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.5e-35  Score=228.58  Aligned_cols=286  Identities=19%  Similarity=0.300  Sum_probs=224.9

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+.||.+.|.|++=+|..-..+|+|+.||.|+|||+...            .+...+..|.+ .|..|++..  ..++++
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G-~V~Gi~v~~--~~~~tv  125 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------ECIRTFKAHEG-LVRGICVTQ--TSFFTV  125 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------hhhheeecccC-ceeeEEecc--cceEEe
Confidence            346999999999999955588999999999999999998            78889999998 899999976  778999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|++|+.|.++...........  ...+-+..-...........+.+|+.....|+..+.-..+.|.++.|+|....+|
T Consensus       126 gdDKtvK~wk~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL  203 (433)
T KOG0268|consen  126 GDDKTVKQWKIDGPPLHTILGKS--VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL  203 (433)
T ss_pred             cCCcceeeeeccCCcceeeeccc--cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence            99999999998753100000000  0000000000111122344578899999999999988889999999999987889


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++|+.|+.|.+||+++...  +.... ....-+.|+|+| ...-|++|+.|..++.||++..     ..++...++|.+.
T Consensus       204 as~~sDrsIvLyD~R~~~P--l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-----~~p~~v~~dhvsA  274 (433)
T KOG0268|consen  204 ASCASDRSIVLYDLRQASP--LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-----SRPLNVHKDHVSA  274 (433)
T ss_pred             eeeccCCceEEEecccCCc--cceee-eeccccceecCc-cccceeeccccccceehhhhhh-----cccchhhccccee
Confidence            9999999999999999872  22221 234567899999 9999999999999999999986     6788999999999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |.+++|||.|+. |++|+.|.+|+||..+......             + .....-..|.++.|+.|.+|++        
T Consensus       275 V~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRd-------------i-YhtkRMq~V~~Vk~S~Dskyi~--------  331 (433)
T KOG0268|consen  275 VMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRD-------------I-YHTKRMQHVFCVKYSMDSKYII--------  331 (433)
T ss_pred             EEEeccCCCcch-hccccccceEEEeecCCCcchh-------------h-hhHhhhheeeEEEEeccccEEE--------
Confidence            999999999997 6799999999999998753221             0 0112235799999999999998        


Q ss_pred             CCCCCceEEEEecCC
Q 016547          346 STGGGGTLQIWRMSD  360 (387)
Q Consensus       346 tg~~dg~i~iw~~~~  360 (387)
                      +|+.|+.|++|....
T Consensus       332 SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKA  346 (433)
T ss_pred             ecCCCcceeeeecch
Confidence            899999999999763

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.7e-34  Score=222.57  Aligned_cols=254  Identities=19%  Similarity=0.372  Sum_probs=219.4

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.||-..|..+++++ ...||++++.|++|+.||++..            +.++.+.||-. .|.|++.+|.-..|++
T Consensus       187 ltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~n------------kvIR~YhGHlS-~V~~L~lhPTldvl~t  252 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYN------------KVIRHYHGHLS-GVYCLDLHPTLDVLVT  252 (460)
T ss_pred             Eeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhh------------hhHHHhccccc-eeEEEeccccceeEEe
Confidence            45668999999999999 8889999999999999999999            78889999998 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.|.++++||+++..                                        .+..+.+|..+|..+.+.|.+ -.
T Consensus       253 ~grDst~RvWDiRtr~----------------------------------------~V~~l~GH~~~V~~V~~~~~d-pq  291 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRA----------------------------------------SVHVLSGHTNPVASVMCQPTD-PQ  291 (460)
T ss_pred             cCCcceEEEeeecccc----------------------------------------eEEEecCCCCcceeEEeecCC-Cc
Confidence            9999999999998643                                        347789999999999999987 56


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++|+.|++|++||++.++  ....+..|...+.+++.+| ....||+++.|. |+-|++..      +..+..+.+|..
T Consensus       292 vit~S~D~tvrlWDl~agk--t~~tlt~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~------g~f~~nlsgh~~  361 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGK--TMITLTHHKKSVRALCLHP-KENLFASASPDN-IKQWKLPE------GEFLQNLSGHNA  361 (460)
T ss_pred             eEEecCCceEEEeeeccCc--eeEeeecccceeeEEecCC-chhhhhccCCcc-ceeccCCc------cchhhccccccc
Confidence            9999999999999999998  6778889999999999999 899999998876 88999998      888999999999


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      .|++++.+.|+  ++++|+++|.|..||.+.+...+....  ...|..     ...+..|++.+|...+..|+       
T Consensus       362 iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGS-----l~sEagI~as~fDktg~rli-------  425 (460)
T KOG0285|consen  362 IINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGS-----LESEAGIFASCFDKTGSRLI-------  425 (460)
T ss_pred             eeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccc--cccCCc-----cccccceeEEeecccCceEE-------
Confidence            99999999988  466999999999999998644322110  000000     12356899999999999999       


Q ss_pred             CCCCCCceEEEEecCC
Q 016547          345 DSTGGGGTLQIWRMSD  360 (387)
Q Consensus       345 ~tg~~dg~i~iw~~~~  360 (387)
                       ||..|.+|++|.-++
T Consensus       426 -t~eadKtIk~~keDe  440 (460)
T KOG0285|consen  426 -TGEADKTIKMYKEDE  440 (460)
T ss_pred             -eccCCcceEEEeccc
Confidence             999999999999774

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-34  Score=218.31  Aligned_cols=305  Identities=17%  Similarity=0.294  Sum_probs=232.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.||.+.|+.++... ...++.+++.|.+-+||.++++            +++..+.||.+ .|++|.|++.+.++++
T Consensus       142 re~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~G-SVNsikfh~s~~L~lT  207 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESG------------ACLATYTGHTG-SVNSIKFHNSGLLLLT  207 (481)
T ss_pred             hhhcccccceeeehhhc-CCcceeecccccceeEEeeccc------------cceeeeccccc-ceeeEEeccccceEEE
Confidence            34568999999999777 6779999999999999999999            89999999998 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccC--CCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS--PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++.|++..||...-.-......  .....++........  ....++........-..++..+.+|...|.+..|...+ 
T Consensus       208 aSGD~taHIW~~av~~~vP~~~--a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-  284 (481)
T KOG0300|consen  208 ASGDETAHIWKAAVNWEVPSNN--APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-  284 (481)
T ss_pred             ccCCcchHHHHHhhcCcCCCCC--CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-
Confidence            9999999999843211110000  000000000000000  00011111111112234677889999999999999888 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      +.+++++.|.+..+||+++++  .+..+.+|....+.++-+| ..+++++++.|-+.++||++..     -..+..|++|
T Consensus       285 ~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGH  356 (481)
T KOG0300|consen  285 QQMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGH  356 (481)
T ss_pred             ceeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cceeeeeccc
Confidence            789999999999999999999  7888999999999999999 9999999999999999999963     5778899999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...|+++.|..+.+  +++|++|.+|+|||+++...+              +.+.. -.++++.++.+..++.++     
T Consensus       357 tdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsp--------------lATIR-tdS~~NRvavs~g~~iIA-----  414 (481)
T KOG0300|consen  357 TDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSP--------------LATIR-TDSPANRVAVSKGHPIIA-----  414 (481)
T ss_pred             ccceeEEEEecCCc--eeecCCCceEEEeeeccccCc--------------ceeee-cCCccceeEeecCCceEE-----
Confidence            99999999999887  469999999999999986443              22222 346788899888665444     


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhh-----hhhccCceEEEeeec
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLA-----ELEKFKAHVISCTSK  386 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~f~  386 (387)
                         .--.+..|++||++       |..+.     .-++|..-|.+++|.
T Consensus       415 ---iPhDNRqvRlfDln-------G~RlaRlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  415 ---IPHDNRQVRLFDLN-------GNRLARLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             ---eccCCceEEEEecC-------CCccccCCcccccccceeeeeeecc
Confidence               33344899999999       33333     336899999999985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=245.34  Aligned_cols=255  Identities=19%  Similarity=0.296  Sum_probs=199.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCc--------------------------------cc-------
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------------------------------HA-------   69 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--------------------------------~~-------   69 (387)
                      .|.+.|++|.|++ +|+|||+|+.||.|+||.+...+..                                ..       
T Consensus       265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            6999999999999 9999999999999999998761100                                00       


Q ss_pred             ---------ccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCcee
Q 016547           70 ---------VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII  140 (387)
Q Consensus        70 ---------~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  140 (387)
                               ....-..+|++.+.||.+ .|..|.|+.+ ++|++++.|++|++|++....+                   
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-------------------  402 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-------------------  402 (712)
T ss_pred             CCccccCCCccccccccchhhhhccch-hheecccccC-CeeEeccccccEEeecCCCcce-------------------
Confidence                     000112357888999998 6899999964 5899999999999999975433                   


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEE
Q 016547          141 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV  220 (387)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~  220 (387)
                                            .....|.+-|+|++|+|.++++|++|+-||.|+||++...+   +.....-..-|+++
T Consensus       403 ----------------------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAv  457 (712)
T KOG0283|consen  403 ----------------------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAV  457 (712)
T ss_pred             ----------------------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhheeE
Confidence                                  33457899999999999988999999999999999998877   33334445889999


Q ss_pred             EecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--c------cceEEEEEEcCCCCe-eEEEecCCCeEEEE
Q 016547          221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H------SAAVLCVQWSPDKSS-VFGSSAEDGLLNIW  291 (387)
Q Consensus       221 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~------~~~i~~~~~~~~~~~-ll~s~~~d~~i~vw  291 (387)
                      +|.| +|+..++|+.+|.+++|+.+.      .+.......  |      ...|+++.|.|.... +| ..+.|..|+||
T Consensus       458 cy~P-dGk~avIGt~~G~C~fY~t~~------lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL-VTSnDSrIRI~  529 (712)
T KOG0283|consen  458 CYSP-DGKGAVIGTFNGYCRFYDTEG------LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL-VTSNDSRIRIY  529 (712)
T ss_pred             Eecc-CCceEEEEEeccEEEEEEccC------CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE-EecCCCceEEE
Confidence            9999 999999999999999999987      444433321  1      237999999986543 55 66779999999


Q ss_pred             eCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      |.+..               .++..+.|+..  .-....|+.||++++        +++.|..|+||++...
T Consensus       530 d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV--------s~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  530 DGRDK---------------DLVHKFKGFRNTSSQISASFSSDGKHIV--------SASEDSWVYIWKNDSF  578 (712)
T ss_pred             eccch---------------hhhhhhcccccCCcceeeeEccCCCEEE--------EeecCceEEEEeCCCC
Confidence            99763               23445555332  345678999999998        7778899999998643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.9e-34  Score=211.57  Aligned_cols=268  Identities=16%  Similarity=0.306  Sum_probs=224.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVL  103 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~  103 (387)
                      ..+.+|.+.|.+++|+- +|..||+|+.|+++.+|+++..+.          .......+|++ .|-.++|+| ....++
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~----------~~~~~~~gh~~-svdql~w~~~~~d~~a   81 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF----------RKELVYRGHTD-SVDQLCWDPKHPDLFA   81 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhh----------hhhhcccCCCc-chhhheeCCCCCcceE
Confidence            45568999999999999 999999999999999999988722          22345778887 467888887 567899


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|++|++||++..+..                                        .......+. .-+.|+|+| .
T Consensus        82 tas~dk~ir~wd~r~~k~~----------------------------------------~~i~~~~en-i~i~wsp~g-~  119 (313)
T KOG1407|consen   82 TASGDKTIRIWDIRSGKCT----------------------------------------ARIETKGEN-INITWSPDG-E  119 (313)
T ss_pred             EecCCceEEEEEeccCcEE----------------------------------------EEeeccCcc-eEEEEcCCC-C
Confidence            9999999999999865443                                        222222233 357899999 7


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      +++.++.|..|.+.|.++.+   ..........++.++|+- ++++++.....|.|.|.....      .+++.++++|.
T Consensus       120 ~~~~~~kdD~it~id~r~~~---~~~~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~  189 (313)
T KOG1407|consen  120 YIAVGNKDDRITFIDARTYK---IVNEEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHP  189 (313)
T ss_pred             EEEEecCcccEEEEEecccc---eeehhcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCC
Confidence            89999999999999999877   223334556788899996 888888888899999998887      89999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ....||.|+|+|++ ||+|+.|..+.+||+...               -+...+..+.=+|..+.|+.+|++|+      
T Consensus       190 snCicI~f~p~Gry-fA~GsADAlvSLWD~~EL---------------iC~R~isRldwpVRTlSFS~dg~~lA------  247 (313)
T KOG1407|consen  190 SNCICIEFDPDGRY-FATGSADALVSLWDVDEL---------------ICERCISRLDWPVRTLSFSHDGRMLA------  247 (313)
T ss_pred             cceEEEEECCCCce-EeeccccceeeccChhHh---------------hhheeeccccCceEEEEeccCcceee------
Confidence            99999999999997 789999999999999875               45566777888999999999999888      


Q ss_pred             CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                        +++.|..|-|=++.      +|..+.+++ +.++-..|+|+|
T Consensus       248 --SaSEDh~IDIA~ve------tGd~~~eI~-~~~~t~tVAWHP  282 (313)
T KOG1407|consen  248 --SASEDHFIDIAEVE------TGDRVWEIP-CEGPTFTVAWHP  282 (313)
T ss_pred             --ccCccceEEeEecc------cCCeEEEee-ccCCceeEEecC
Confidence              88888999999999      899888887 789999999998

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-34  Score=236.43  Aligned_cols=252  Identities=20%  Similarity=0.367  Sum_probs=211.7

Q ss_pred             eeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE
Q 016547            3 LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL   82 (387)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~   82 (387)
                      +|+..-.+..++.+.-   .+  ...-..-+|++..|.. ..+++++|++|..|+||+..+.            ..+..+
T Consensus        32 LynG~V~IWnyetqtm---Vk--sfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~------------ekV~~F   93 (794)
T KOG0276|consen   32 LYNGDVQIWNYETQTM---VK--SFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG------------EKVKTF   93 (794)
T ss_pred             eecCeeEEEeccccee---ee--eeeecccchhhheeee-ccceEEEecCCceEEEEecccc------------eeeEEe
Confidence            4555555555543321   11  1112567899999999 8899999999999999999999            788999


Q ss_pred             eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547           83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  162 (387)
Q Consensus        83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (387)
                      ..|.+ -|.+++.+|...+++++|.|-+|++||.++                                       .+.+.
T Consensus        94 eAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~---------------------------------------~wa~~  133 (794)
T KOG0276|consen   94 EAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---------------------------------------EWACE  133 (794)
T ss_pred             ecccc-ceeeeeecCCCCeEEecCCccEEEEeeccC---------------------------------------ceeee
Confidence            99998 799999999999999999999999999985                                       34556


Q ss_pred             eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC--CeEEEeeCCCeEE
Q 016547          163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD--NLILTGSADNSVR  240 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~  240 (387)
                      +++.+|..-|.+++|.|.+.+.|++++-|++|++|.+.+..  ...++.+|...|+|+++-+ .+  .+|++|++|..|+
T Consensus       134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiK  210 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIK  210 (794)
T ss_pred             eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--CceeeeccccCcceEEecc-CCCcceEEecCCCceEE
Confidence            88999999999999999998999999999999999998877  6778889999999999977 33  5999999999999


Q ss_pred             EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      +||..+      ..+++++++|...|+.+.|+|.-+ ++++|++||+++||+-.+....               ..+.-.
T Consensus       211 vWDyQt------k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE---------------~tLn~g  268 (794)
T KOG0276|consen  211 VWDYQT------KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE---------------KTLNYG  268 (794)
T ss_pred             Eeecch------HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh---------------hhhhcC
Confidence            999999      999999999999999999999998 6789999999999998875332               223334


Q ss_pred             CCCeeEEEEccCCCeEE
Q 016547          321 RDKVVDFHWNASDPWTV  337 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~  337 (387)
                      -..+.+++-.+.++.++
T Consensus       269 leRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  269 LERVWCIAAHKGDGKIA  285 (794)
T ss_pred             CceEEEEeecCCCCeEE
Confidence            45777777777665543

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=7.8e-33  Score=241.20  Aligned_cols=257  Identities=17%  Similarity=0.240  Sum_probs=187.5

Q ss_pred             ecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCC
Q 016547           50 HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPA  128 (387)
Q Consensus        50 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  128 (387)
                      |+.++.|++|+....            .++..+.+|.+ .|.+++|+|+ +.+|++|+.|++|++||+.+......    
T Consensus        50 GG~~gvI~L~~~~r~------------~~v~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRK------------PPVIKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----  112 (568)
T ss_pred             CCceeEEEeeecCCC------------ceEEEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----
Confidence            567888999998766            57788999987 7999999996 78999999999999999975321000    


Q ss_pred             cccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeE
Q 016547          129 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK  208 (387)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  208 (387)
                                                  ....++..+.+|...|.+++|+|++..++++++.|+.|++||+++++  ...
T Consensus       113 ----------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~  162 (568)
T PTZ00420        113 ----------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAF  162 (568)
T ss_pred             ----------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEE
Confidence                                        00123356788999999999999986667899999999999999887  334


Q ss_pred             EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE-----EEEcCCCCeeEEEec
Q 016547          209 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-----VQWSPDKSSVFGSSA  283 (387)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~ll~s~~  283 (387)
                      .+. |...|.+++|+| ++.+|++++.|+.|++||+++      +..+.++.+|.+.+..     ..|++++.+++ +++
T Consensus       163 ~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-TtG  233 (568)
T PTZ00420        163 QIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-STG  233 (568)
T ss_pred             EEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EEE
Confidence            443 567899999999 999999999999999999998      8888899999876443     33568888765 544


Q ss_pred             CC----CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          284 ED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       284 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .|    +.|+|||++....+.            ....+..+.+.+...-..+++.+ ++       +|+.|++|++|++.
T Consensus       234 ~d~~~~R~VkLWDlr~~~~pl------------~~~~ld~~~~~L~p~~D~~tg~l-~l-------sGkGD~tIr~~e~~  293 (568)
T PTZ00420        234 FSKNNMREMKLWDLKNTTSAL------------VTMSIDNASAPLIPHYDESTGLI-YL-------IGKGDGNCRYYQHS  293 (568)
T ss_pred             cCCCCccEEEEEECCCCCCce------------EEEEecCCccceEEeeeCCCCCE-EE-------EEECCCeEEEEEcc
Confidence            44    479999999754331            12223333333333333344544 44       55666999999998


Q ss_pred             CCcccccchhhhhhhccCceEEEeeecC
Q 016547          360 DLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..    ....+.+.. +..++.+++|.|
T Consensus       294 ~~----~~~~l~~~~-s~~p~~g~~f~P  316 (568)
T PTZ00420        294 LG----SIRKVNEYK-SCSPFRSFGFLP  316 (568)
T ss_pred             CC----cEEeecccc-cCCCccceEEcc
Confidence            31    122233333 567888888887

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=225.62  Aligned_cols=250  Identities=21%  Similarity=0.377  Sum_probs=203.3

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+..+|..+|..+.|+| +.++|++|+.|..+.+||+.+++            ....+....+..+.+++|.|||..++
T Consensus       262 ~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd------------~~~~y~~~~~~S~~sc~W~pDg~~~V  328 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGD------------LRHLYPSGLGFSVSSCAWCPDGFRFV  328 (519)
T ss_pred             eeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcch------------hhhhcccCcCCCcceeEEccCCceeE
Confidence            567789999999999999 77888888888899999999994            33333222233578999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCC
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSA  182 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  182 (387)
                      +|+.|+.+..||++....                                         ..+++- ...|.+++..+|| 
T Consensus       329 ~Gs~dr~i~~wdlDgn~~-----------------------------------------~~W~gvr~~~v~dlait~Dg-  366 (519)
T KOG0293|consen  329 TGSPDRTIIMWDLDGNIL-----------------------------------------GNWEGVRDPKVHDLAITYDG-  366 (519)
T ss_pred             ecCCCCcEEEecCCcchh-----------------------------------------hcccccccceeEEEEEcCCC-
Confidence            999999999999975321                                         122221 2469999999999 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ..+++.+.|..|++++.++...   +.......+|++++.+. ++.++++.=.+..+++||+..      .+.++.+.+|
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~d---r~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e------~~lv~kY~Gh  436 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVD---RGLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE------NKLVRKYFGH  436 (519)
T ss_pred             cEEEEEecccceeeechhhhhh---hccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch------hhHHHHhhcc
Confidence            7777778999999999887652   22333457899999999 999999999999999999997      8888999888


Q ss_pred             cce--EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          263 SAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       263 ~~~--i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ...  +..-+|-.....++|+|++|+.|+||+..++               .++..+.||...|++++|+|..++++|++
T Consensus       437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~~vNcVswNP~~p~m~ASa  501 (519)
T KOG0293|consen  437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSKTVNCVSWNPADPEMFASA  501 (519)
T ss_pred             cccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence            643  5555666555446889999999999999886               56888999999999999999999999855


Q ss_pred             cCCCCCCCCCceEEEEecCC
Q 016547          341 SDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~  360 (387)
                      |+|       |+||||....
T Consensus       502 sDD-------gtIRIWg~~~  514 (519)
T KOG0293|consen  502 SDD-------GTIRIWGPSD  514 (519)
T ss_pred             CCC-------CeEEEecCCc
Confidence            555       9999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=9.7e-34  Score=216.38  Aligned_cols=282  Identities=18%  Similarity=0.231  Sum_probs=216.8

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcc------cccCCCCCCCeEEEeccCCCceEEEE
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH------AVLGATNSRPDLILTGHQDNAEFALA   94 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~~h~~~~v~~~~   94 (387)
                      ..+...+..|++++++.+|+| +|.++|||+.|-.|+|.|++......      .-........++++..|.+ .|+++.
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~  179 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLD  179 (430)
T ss_pred             ccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-ccccee
Confidence            345556678999999999999 99999999999999999998432111      1111122245778899998 799999


Q ss_pred             ECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE
Q 016547           95 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  174 (387)
Q Consensus        95 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  174 (387)
                      |+|....|++|+.|++|+++|+.+......                                      ........+|.+
T Consensus       180 FHPre~ILiS~srD~tvKlFDfsK~saKrA--------------------------------------~K~~qd~~~vrs  221 (430)
T KOG0640|consen  180 FHPRETILISGSRDNTVKLFDFSKTSAKRA--------------------------------------FKVFQDTEPVRS  221 (430)
T ss_pred             ecchhheEEeccCCCeEEEEecccHHHHHH--------------------------------------HHHhhccceeee
Confidence            999999999999999999999975422111                                      111234578999


Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  253 (387)
                      +.|+|.| .+++.|.....+++||+.+.+.-. .....+|.+.|+++.+++ .+++.++++.||.|++||--+      .
T Consensus       222 iSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS------~  293 (430)
T KOG0640|consen  222 ISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS------N  293 (430)
T ss_pred             EeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc------H
Confidence            9999999 889999999999999999876211 112356899999999999 999999999999999999888      8


Q ss_pred             CceEEec-ccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC-----------------------
Q 016547          254 SPINKFE-GHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN-----------------------  308 (387)
Q Consensus       254 ~~~~~~~-~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------  308 (387)
                      +++.++. +|. ..|.+..|..+++++| +.+.|..+++|.+.++.....-......                       
T Consensus       294 rCv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE  372 (430)
T KOG0640|consen  294 RCVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE  372 (430)
T ss_pred             HHHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc
Confidence            8888885 454 4699999999999876 8889999999999885443322111000                       


Q ss_pred             -----------CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          309 -----------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       309 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                                 ..........+|++.+..+.-+|.++-++        ||+.|..+|+|--+
T Consensus       373 as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm--------TcsdD~raRFWyrr  426 (430)
T KOG0640|consen  373 ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM--------TCSDDFRARFWYRR  426 (430)
T ss_pred             ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee--------eecccceeeeeeec
Confidence                       00011122357999999999999999877        77777999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.1e-32  Score=228.41  Aligned_cols=245  Identities=25%  Similarity=0.509  Sum_probs=208.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .....|...+.++.|+| +++++++++.||.|++||+.+.            +....+..|.. .|.++.|+++++++++
T Consensus        45 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~~~  110 (289)
T cd00200          45 RTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTS-YVSSVAFSPDGRILSS  110 (289)
T ss_pred             EEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcc------------cceEEEeccCC-cEEEEEEcCCCCEEEE
Confidence            34557899999999999 7789999999999999999987            56667778876 6899999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|+.|.+||+.+..                                        ....+..|...+.++.|+|++ .+
T Consensus       111 ~~~~~~i~~~~~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~  149 (289)
T cd00200         111 SSRDKTIKVWDVETGK----------------------------------------CLTTLRGHTDWVNSVAFSPDG-TF  149 (289)
T ss_pred             ecCCCeEEEEECCCcE----------------------------------------EEEEeccCCCcEEEEEEcCcC-CE
Confidence            9889999999997432                                        224455788899999999997 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++++.++.|++||++..+  ....+..|...+.+++|+| +++.+++++.||.|++||++.      ++.+..+..|..
T Consensus       150 l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~  220 (289)
T cd00200         150 VASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHEN  220 (289)
T ss_pred             EEEEcCCCcEEEEEccccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcCC
Confidence            8888889999999998776  4566668888999999999 888999999999999999998      778888878899


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      .+.+++|+|++. ++++++.||.|++||+...               .....+..|...|.+++|+|++.+++       
T Consensus       221 ~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~-------  277 (289)
T cd00200         221 GVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLA-------  277 (289)
T ss_pred             ceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEE-------
Confidence            999999999966 5667878999999999864               23455568888999999999988877       


Q ss_pred             CCCCCCceEEEEe
Q 016547          345 DSTGGGGTLQIWR  357 (387)
Q Consensus       345 ~tg~~dg~i~iw~  357 (387)
                       +++.||.|++|+
T Consensus       278 -~~~~d~~i~iw~  289 (289)
T cd00200         278 -SGSADGTIRIWD  289 (289)
T ss_pred             -EecCCCeEEecC
Confidence             777889999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-33  Score=234.15  Aligned_cols=242  Identities=21%  Similarity=0.428  Sum_probs=211.0

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec-cCCCceEEEEECCCCCEEEEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      .+.|+++.|++ +|.+||+|..+|.|.|||....            +....+.+ |.. .|-+++|.  +..+.+|+.|+
T Consensus       217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~-rvg~laW~--~~~lssGsr~~  280 (484)
T KOG0305|consen  217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHAS-RVGSLAWN--SSVLSSGSRDG  280 (484)
T ss_pred             CCceEEEEECC-CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCc-eeEEEecc--CceEEEecCCC
Confidence            89999999999 9999999999999999999988            66677778 665 79999997  77899999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|..+|++......                                       ..+.+|...|..++|++++ .++++|+
T Consensus       281 ~I~~~dvR~~~~~~---------------------------------------~~~~~H~qeVCgLkws~d~-~~lASGg  320 (484)
T KOG0305|consen  281 KILNHDVRISQHVV---------------------------------------STLQGHRQEVCGLKWSPDG-NQLASGG  320 (484)
T ss_pred             cEEEEEEecchhhh---------------------------------------hhhhcccceeeeeEECCCC-CeeccCC
Confidence            99999998643321                                       2367899999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  267 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~  267 (387)
                      .|+.+.|||....+  ....+..|...|..++|+|....+||+|+  .|+.|++||..+      +..+..+. ....|.
T Consensus       321 nDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vd-tgsQVc  391 (484)
T KOG0305|consen  321 NDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVD-TGSQVC  391 (484)
T ss_pred             CccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEecccc-cCCcee
Confidence            99999999996655  56778899999999999999999999976  499999999998      88888887 467899


Q ss_pred             EEEEcCCCCeeEEEe-cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          268 CVQWSPDKSSVFGSS-AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .|.|++..+.++.+- ..++.|.||++.+.               ..+..+.+|...|..++++|||..++        +
T Consensus       392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~--------t  448 (484)
T KOG0305|consen  392 SLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIV--------T  448 (484)
T ss_pred             eEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEE--------E
Confidence            999999987766443 35678999999885               45777899999999999999999998        8


Q ss_pred             CCCCceEEEEecCC
Q 016547          347 TGGGGTLQIWRMSD  360 (387)
Q Consensus       347 g~~dg~i~iw~~~~  360 (387)
                      |+.|.++++|++-+
T Consensus       449 ~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  449 GAADETLRFWNLFD  462 (484)
T ss_pred             ecccCcEEeccccC
Confidence            88889999999984

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-32  Score=208.36  Aligned_cols=264  Identities=16%  Similarity=0.288  Sum_probs=213.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC--
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK--  107 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~--  107 (387)
                      -.+.|+++.|++ +|.+|++++.|.+++|||..++            +...++..+.- .+..++|......++.++.  
T Consensus        13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g------------~~~~ti~skky-G~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen   13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSG------------KQVKTINSKKY-GVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCC------------ceeeEeecccc-cccEEEEecCCceEEEccCCC
Confidence            478999999999 8999999999999999999999            67777777665 3678888777777776665  


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      |.+|+..++.+.+                                        .++.+.+|...|..++.+|-+ ..+++
T Consensus        79 d~tIryLsl~dNk----------------------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS  117 (311)
T KOG1446|consen   79 DDTIRYLSLHDNK----------------------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLS  117 (311)
T ss_pred             CCceEEEEeecCc----------------------------------------eEEEcCCCCceEEEEEecCCC-CeEEe
Confidence            8899999997643                                        347889999999999999998 78999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec---cccc
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSA  264 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~~~  264 (387)
                      ++.|++|++||++..+.+.....    ..-...+|+| .|-++|++...+.|++||+|..+    ..+..++.   ....
T Consensus       118 ~S~D~tvrLWDlR~~~cqg~l~~----~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~  188 (311)
T KOG1446|consen  118 SSLDKTVRLWDLRVKKCQGLLNL----SGRPIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEA  188 (311)
T ss_pred             cccCCeEEeeEecCCCCceEEec----CCCcceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCcc
Confidence            99999999999998774333222    2334678999 99999999988899999999875    34555543   3367


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC---eeEEEEccCCCeEEEEec
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~s~s  341 (387)
                      ..+.+.|+|+|++|| .+...+.+++.|.-.+.               ....+.++...   -.+..|.|++++++    
T Consensus       189 ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~G~---------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl----  248 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSIL-LSTNASFIYLLDAFDGT---------------VKSTFSGYPNAGNLPLSATFTPDSKFVL----  248 (311)
T ss_pred             ceeeeEEcCCCCEEE-EEeCCCcEEEEEccCCc---------------EeeeEeeccCCCCcceeEEECCCCcEEE----
Confidence            789999999999877 55668899999988763               23334443322   26788999999988    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f~P  387 (387)
                          +|+.||+|.+|+++      ++..+..+++ +..++.++.|.|
T Consensus       249 ----~gs~dg~i~vw~~~------tg~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  249 ----SGSDDGTIHVWNLE------TGKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             ----EecCCCcEEEEEcC------CCcEeeEecCCCCCCccccccCC
Confidence                88888999999998      8999888888 788999999988

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.2e-32  Score=256.14  Aligned_cols=263  Identities=17%  Similarity=0.232  Sum_probs=204.8

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEec
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG  106 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~  106 (387)
                      ..+...|.+++|+|..+.+||+++.||+|++||+.++            +.+..+.+|.+ .|++++|+| ++.+|++|+
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------QLVTEMKEHEK-RVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------eEEEEecCCCC-CEEEEEEcCCCCCEEEEEc
Confidence            3456789999999877889999999999999999887            67778889987 799999997 789999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .|++|++||+.++..                                        +..+..+ ..+.++.|.+..+.+++
T Consensus       596 ~Dg~v~iWd~~~~~~----------------------------------------~~~~~~~-~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        596 DDGSVKLWSINQGVS----------------------------------------IGTIKTK-ANICCVQFPSESGRSLA  634 (793)
T ss_pred             CCCEEEEEECCCCcE----------------------------------------EEEEecC-CCeEEEEEeCCCCCEEE
Confidence            999999999975422                                        1333333 57899999665448999


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                      +|+.||.|++||++.... ....+.+|...|.++.|.  ++.+|++++.|+.|++||++.........++..+.+|...+
T Consensus       635 tgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i  711 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK  711 (793)
T ss_pred             EEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence            999999999999987653 245567899999999996  47899999999999999998532111146788999999999


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .+++|+|++.+ +++|+.|+.|++|+............... .+ ..-.....|...|.+++|+|++..++        +
T Consensus       712 ~~v~~s~~~~~-lasgs~D~~v~iw~~~~~~~~~s~~~~~~-~~-~~~~~~~~~~~~V~~v~ws~~~~~lv--------a  780 (793)
T PLN00181        712 NFVGLSVSDGY-IATGSETNEVFVYHKAFPMPVLSYKFKTI-DP-VSGLEVDDASQFISSVCWRGQSSTLV--------A  780 (793)
T ss_pred             eEEEEcCCCCE-EEEEeCCCEEEEEECCCCCceEEEecccC-Cc-ccccccCCCCcEEEEEEEcCCCCeEE--------E
Confidence            99999999985 68999999999999865322111000000 00 00011234667899999999999887        6


Q ss_pred             CCCCceEEEEec
Q 016547          347 TGGGGTLQIWRM  358 (387)
Q Consensus       347 g~~dg~i~iw~~  358 (387)
                      |+.||.|+||++
T Consensus       781 ~~~dG~I~i~~~  792 (793)
T PLN00181        781 ANSTGNIKILEM  792 (793)
T ss_pred             ecCCCcEEEEec
Confidence            777899999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.6e-33  Score=227.76  Aligned_cols=305  Identities=17%  Similarity=0.217  Sum_probs=226.1

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT   98 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~   98 (387)
                      .|.-...++.+|+..|.++++-| .|-.|++|+.|.+|++||+.......        +..+.+..-....|.++.|++.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~--------~~fr~l~P~E~h~i~sl~ys~T  225 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASM--------RSFRQLQPCETHQINSLQYSVT  225 (641)
T ss_pred             CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccc--------hhhhccCcccccccceeeecCC
Confidence            45555667778999999999999 88899999999999999998774322        2222333333336899999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      |..|++.+.....+++|-..........-                            .....-+...++|...++|.+|+
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~KG----------------------------DQYI~Dm~nTKGHia~lt~g~wh  277 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFSKG----------------------------DQYIRDMYNTKGHIAELTCGCWH  277 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeeecc----------------------------chhhhhhhccCCceeeeeccccc
Confidence            99988888888999998654321110000                            00111224457899999999999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEE--e--eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKV--E--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      |+....|++++.||++++||+...+.+....  .  .+..-+++.++|+| ++.++|+|..||.|.+|+.+....   ..
T Consensus       278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p  353 (641)
T KOG0772|consen  278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RP  353 (641)
T ss_pred             cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---cc
Confidence            9998999999999999999998765332211  1  12334688999999 999999999999999999876432   23


Q ss_pred             ceEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEc
Q 016547          255 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWN  330 (387)
Q Consensus       255 ~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~  330 (387)
                      ....-.+|..  .|+||.||++|++| ++-+.|+.+++||++...+++..              ..+  ..-+-+.++||
T Consensus       354 ~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~~--------------~tgL~t~~~~tdc~FS  418 (641)
T KOG0772|consen  354 VMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLNV--------------RTGLPTPFPGTDCCFS  418 (641)
T ss_pred             ceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccchhh--------------hcCCCccCCCCccccC
Confidence            3444567876  89999999999975 69999999999999997665431              112  12245789999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |+.+.++...|..  -+...|++.+||..      +-+.+.++.--...|..+.|||
T Consensus       419 Pd~kli~TGtS~~--~~~~~g~L~f~d~~------t~d~v~ki~i~~aSvv~~~Whp  467 (641)
T KOG0772|consen  419 PDDKLILTGTSAP--NGMTAGTLFFFDRM------TLDTVYKIDISTASVVRCLWHP  467 (641)
T ss_pred             CCceEEEeccccc--CCCCCceEEEEecc------ceeeEEEecCCCceEEEEeecc
Confidence            9988766544433  45566899999988      6777777777788999999998

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=9.5e-33  Score=216.11  Aligned_cols=281  Identities=28%  Similarity=0.555  Sum_probs=220.2

Q ss_pred             CcceeeeeeecCCCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcc----cccCCCCCCCeEEEeccCCCceEEE
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRH----AVLGATNSRPDLILTGHQDNAEFAL   93 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~h~~~~v~~~   93 (387)
                      .|.+ ..+..+|.+.++.+.-.+. +..+.|+-+..|.|.||++.......    ........+++.++.+|.. .=+.+
T Consensus       140 ~P~~-~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~L  217 (440)
T KOG0302|consen  140 KPQI-EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGL  217 (440)
T ss_pred             cccc-cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceee
Confidence            3444 3566789999999998774 45677788899999999986542211    1122345689999999997 56899


Q ss_pred             EECCCC-CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547           94 AMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  172 (387)
Q Consensus        94 ~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  172 (387)
                      +|||-. ..|++|.--+.|++|...++.-....                                     ..+.+|+..|
T Consensus       218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~-------------------------------------~Pf~gH~~SV  260 (440)
T KOG0302|consen  218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ-------------------------------------RPFTGHTKSV  260 (440)
T ss_pred             ecccccccccccCccccceEeeeeccCceeecC-------------------------------------ccccccccch
Confidence            999943 35888888899999998765332221                                     3456799999


Q ss_pred             EEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547          173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  252 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  252 (387)
                      -.++|+|.....|++|+-||+|+|||++.+.+........|.+.|+.|.|+. ...+||+|+.||+++|||+|..+.   
T Consensus       261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~---  336 (440)
T KOG0302|consen  261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS---  336 (440)
T ss_pred             hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC---
Confidence            9999999988899999999999999999985444444589999999999999 667999999999999999998776   


Q ss_pred             CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC----CCCCCceeeeeeccCCCCeeEEE
Q 016547          253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR----TTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                      ++++..++.|..+|+++.|+|....+|++++.|..|.+||+.......+....    -...|+++++...+. ..+..+.
T Consensus       337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ-ke~Kevh  415 (440)
T KOG0302|consen  337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ-KEVKEVH  415 (440)
T ss_pred             CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch-hHhhhhe
Confidence            68999999999999999999987778889999999999999864442222111    122567777776554 4789999


Q ss_pred             EccCCCeEEEEecCC
Q 016547          329 WNASDPWTVVSVSDD  343 (387)
Q Consensus       329 ~~~~~~~l~~s~s~d  343 (387)
                      |++.-+-++++.+.|
T Consensus       416 WH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  416 WHRQIPGLLVSTAID  430 (440)
T ss_pred             eccCCCCeEEEeccc
Confidence            999988888876655

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.8e-33  Score=226.88  Aligned_cols=251  Identities=22%  Similarity=0.403  Sum_probs=207.2

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PY  101 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~  101 (387)
                      ......+|..+|.+++|+. ++..+.+++.|+.|++||++++            ++...+  |.+..++|+.|+|++ +.
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG------------~~~~~f--~~~~~~~cvkf~pd~~n~  314 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETG------------QVLSRF--HLDKVPTCVKFHPDNQNI  314 (503)
T ss_pred             eehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccc------------eEEEEE--ecCCCceeeecCCCCCcE
Confidence            3456678999999999999 8889999999999999999999            444444  455578999999998 78


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++|+.|+.|+.||++++.                                        .++.+..|-+.|..+.|.++|
T Consensus       315 fl~G~sd~ki~~wDiRs~k----------------------------------------vvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  315 FLVGGSDKKIRQWDIRSGK----------------------------------------VVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             EEEecCCCcEEEEeccchH----------------------------------------HHHHHHhhhhheeeeEEccCC
Confidence            8999999999999998654                                        336677899999999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       ..+++.+.|+.+++|+.+..-. .......+.....++..+| .+.++++-+.|+.|.+|.+.....   ......+++
T Consensus       355 -~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feG  428 (503)
T KOG0282|consen  355 -RRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEG  428 (503)
T ss_pred             -ceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccc---cCHhhhhcc
Confidence             8899999999999999887652 2222233444567899999 999999999999999999765322   334455667


Q ss_pred             cc--ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          262 HS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       262 ~~--~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      |.  +.-..+.|||||++ |++|+.||.+.+||.++.               .++..+.+|.+.+..+.|+|.....++ 
T Consensus       429 h~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~---------------kl~~~lkah~~~ci~v~wHP~e~Skva-  491 (503)
T KOG0282|consen  429 HSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTT---------------KLVSKLKAHDQPCIGVDWHPVEPSKVA-  491 (503)
T ss_pred             eeccCceeeEEEcCCCCe-EEeecCCccEEEeechhh---------------hhhhccccCCcceEEEEecCCCcceeE-
Confidence            74  45668899999997 579999999999999985               457778999999999999999887777 


Q ss_pred             ecCCCCCCCCCceEEEEe
Q 016547          340 VSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~  357 (387)
                            |||.||.|++|+
T Consensus       492 ------t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  492 ------TCGWDGLIKIWD  503 (503)
T ss_pred             ------ecccCceeEecC
Confidence                  667789999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-33  Score=238.47  Aligned_cols=250  Identities=20%  Similarity=0.344  Sum_probs=207.6

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .++.+|.|+|+.++|+| .+.++++|++|-.|+||+..+.            +++.++.||-+ -|..+.|++.-.++++
T Consensus        45 ~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r------------rclftL~GHlD-YVRt~~FHheyPWIlS  110 (1202)
T KOG0292|consen   45 DRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR------------RCLFTLLGHLD-YVRTVFFHHEYPWILS  110 (1202)
T ss_pred             hhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc------------eehhhhccccc-eeEEeeccCCCceEEE
Confidence            34557999999999999 8899999999999999999999            88999999998 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      +|.|.+|+||+.++.                                        .++..+.+|..-|.|.+|+|.. .+
T Consensus       111 ASDDQTIrIWNwqsr----------------------------------------~~iavltGHnHYVMcAqFhptE-Dl  149 (1202)
T KOG0292|consen  111 ASDDQTIRIWNWQSR----------------------------------------KCIAVLTGHNHYVMCAQFHPTE-DL  149 (1202)
T ss_pred             ccCCCeEEEEeccCC----------------------------------------ceEEEEecCceEEEeeccCCcc-ce
Confidence            999999999999864                                        3458889999999999999987 78


Q ss_pred             EEEecCCCeEEEEEccCCCC---------------------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          185 FCSVGDDSCLILWDARVGTS---------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                      ++++|-|.+|++||+..-+.                           .....+.+|...|+-++|+| .-.++++|++|+
T Consensus       150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDR  228 (1202)
T KOG0292|consen  150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDR  228 (1202)
T ss_pred             EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcc
Confidence            99999999999999853210                           12345678999999999999 899999999999


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      .|++|.+...+    .-.+-+..+|...|.++-|+|... ++.+.++|+.|+|||+.+.               ..+.++
T Consensus       229 qVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR---------------t~v~tf  288 (1202)
T KOG0292|consen  229 QVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR---------------TSVQTF  288 (1202)
T ss_pred             eeeEEEecccc----ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc---------------cceeee
Confidence            99999998633    345667789999999999999877 4569999999999999985               234455


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....+..+.++-+|..+.++         +|.|+-+.||.+.
T Consensus       289 rrendRFW~laahP~lNLfA---------AgHDsGm~VFkle  321 (1202)
T KOG0292|consen  289 RRENDRFWILAAHPELNLFA---------AGHDSGMIVFKLE  321 (1202)
T ss_pred             eccCCeEEEEEecCCcceee---------eecCCceEEEEEc
Confidence            55556677777777665332         3344555666555

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-32  Score=231.36  Aligned_cols=271  Identities=17%  Similarity=0.309  Sum_probs=228.8

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .......||...|++++++. +...+++|+. +.++||+.++.            ++++++..-   .+.+..|.|.+++
T Consensus       364 ~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~------------kciRTi~~~---y~l~~~Fvpgd~~  426 (888)
T KOG0306|consen  364 TSNIEIGGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTL------------KCIRTITCG---YILASKFVPGDRY  426 (888)
T ss_pred             cceeeeccchhheeEEEeec-CceeeeecCC-CcEEEEEccCc------------ceeEEeccc---cEEEEEecCCCce
Confidence            33467778999999999998 7777777654 58999999998            677776544   4789999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++|...|.+.++|+....                                        .+...+.|.+.|+.++.+||+
T Consensus       427 Iv~G~k~Gel~vfdlaS~~----------------------------------------l~Eti~AHdgaIWsi~~~pD~  466 (888)
T KOG0306|consen  427 IVLGTKNGELQVFDLASAS----------------------------------------LVETIRAHDGAIWSISLSPDN  466 (888)
T ss_pred             EEEeccCCceEEEEeehhh----------------------------------------hhhhhhccccceeeeeecCCC
Confidence            9999999999999997532                                        235567899999999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCC-----ceeE-----EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTS-----PVIK-----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~-----~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                       ..+++|+.|.+|++||..-...     ....     ....-+..|.|+.++| ++.+|+++=-|+++++|-+.+     
T Consensus       467 -~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt-----  539 (888)
T KOG0306|consen  467 -KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT-----  539 (888)
T ss_pred             -CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----
Confidence             7899999999999999753211     0000     1122456799999999 999999999999999999999     


Q ss_pred             CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                       .+...++.+|.-||.|+..+||+. ++++|+.|..|+||-+.-+               .+...+.+|.+.|.++.|.|
T Consensus       540 -lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFG---------------DCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  540 -LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG---------------DCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             -eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccc---------------hhhhhhhcccCceeEEEEcc
Confidence             888999999999999999999999 5789999999999999886               34566789999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ....++        |+|.|+.|+-||-.      .-+.++.+.+|...|++++.+|
T Consensus       603 ~~~~FF--------t~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  603 KTHLFF--------TCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             cceeEE--------EecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence            665555        66677999999999      7889999999999999999887

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-32  Score=203.56  Aligned_cols=285  Identities=15%  Similarity=0.220  Sum_probs=227.2

Q ss_pred             eeecCCCcEEEEEecC--CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           26 KTIIHPGEVNRIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~--~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .-.||..+|-.++|+|  ++|.+|++++.||.=.+-+-+++            .-+-++.+|.+ +|++..++.+....+
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg------------dwigtfeghkg-avw~~~l~~na~~aa   75 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG------------DWIGTFEGHKG-AVWSATLNKNATRAA   75 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC------------CcEEeeeccCc-ceeeeecCchhhhhh
Confidence            4458999999999998  68899999999999888888888            78899999998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccC-CCCCCceeccCCCCCCCCCCCCCCCCC-CCceeecCCCCCeEEEEEccCC
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKS-AGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++.|=+-++||.-++.....+....... ..-.........+.....+++++.... .+...+.+|++.|..+.|+...
T Consensus        76 saaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   76 SAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED  155 (334)
T ss_pred             hhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence            99999999999998876554444332221 111111222233334445555555443 3556788999999999999877


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       +.+++.+.|++|++||.+++.  .+..+ ....+|+++.+++ ++++|.++ ..+.|.+||..+      ...+..++ 
T Consensus       156 -~~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaks------f~~lKs~k-  222 (334)
T KOG0278|consen  156 -KCILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKS------FGLLKSYK-  222 (334)
T ss_pred             -ceEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCceeEEecccc------ccceeecc-
Confidence             788888999999999999998  44444 4578899999999 88877664 567899999998      77777777 


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee-eccCCCCeeEEEEccCCCeEEEEe
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ....|.+...+|+.. ++++|++|..++.||..++.+               +.. ..+|.++|.++.|+|+|...+   
T Consensus       223 ~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeE---------------i~~~nkgh~gpVhcVrFSPdGE~yA---  283 (334)
T KOG0278|consen  223 MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEE---------------IGSYNKGHFGPVHCVRFSPDGELYA---  283 (334)
T ss_pred             CccccccccccCCCc-eEEecCcceEEEEEeccCCce---------------eeecccCCCCceEEEEECCCCceee---
Confidence            467799999999986 678999999999999998643               223 378999999999999998766   


Q ss_pred             cCCCCCCCCCceEEEEecCC
Q 016547          341 SDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~  360 (387)
                           +|+.||+|++|.+..
T Consensus       284 -----sGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  284 -----SGSEDGTIRLWQTTP  298 (334)
T ss_pred             -----ccCCCceEEEEEecC
Confidence                 889999999999884

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.8e-32  Score=206.20  Aligned_cols=266  Identities=18%  Similarity=0.285  Sum_probs=207.7

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -.+.|.+++|+|....+++.|+.||+|++|+++..-.          ..-.....|.+ +|.+++|+.||..+++|+.|+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----------~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk   94 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----------LVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDK   94 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCc----------ccchhhhccCC-CeEEEEEccCCceEEeeccCC
Confidence            4688999999998888888999999999999987410          11134555666 899999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-eeEEEe
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSV  188 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~  188 (387)
                      .+++||+.+++.                                         ..+..|..+|.++.|-+... ..|++|
T Consensus        95 ~~k~wDL~S~Q~-----------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TG  133 (347)
T KOG0647|consen   95 QAKLWDLASGQV-----------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTG  133 (347)
T ss_pred             ceEEEEccCCCe-----------------------------------------eeeeecccceeEEEEecCCCcceeEec
Confidence            999999987533                                         56678999999999987651 378999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL  267 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~  267 (387)
                      +.|++|++||.+...  .+..+. -...++++..   ...+++++..++.|.+|++++...     ..... ....-.+.
T Consensus       134 SWDKTlKfWD~R~~~--pv~t~~-LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~t-----e~k~~~SpLk~Q~R  202 (347)
T KOG0647|consen  134 SWDKTLKFWDTRSSN--PVATLQ-LPERVYAADV---LYPMAVVATAERHIAVYNLENPPT-----EFKRIESPLKWQTR  202 (347)
T ss_pred             ccccceeecccCCCC--eeeeee-ccceeeehhc---cCceeEEEecCCcEEEEEcCCCcc-----hhhhhcCcccceee
Confidence            999999999999776  344433 3466777765   456899999999999999987321     11111 11334678


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---------CCeeEEEEccCCCeEEE
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKVVDFHWNASDPWTVV  338 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~  338 (387)
                      |++..++... +|.|+-+|++.|..+..+...             .-+.+..|.         -.|++++|+|....|+ 
T Consensus       203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~~-------------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv-  267 (347)
T KOG0647|consen  203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNPK-------------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV-  267 (347)
T ss_pred             EEEEEecCCc-eEeeeecceEEEEecCCCCcc-------------CceeEEEeccCCCCCCceEEecceEeecccceEE-
Confidence            9988888774 578999999999999875221             122333333         2688999999888887 


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                             |.|.||++.+||-+      ....|.+.+.|..+|++++|+
T Consensus       268 -------TaGsDGtf~FWDkd------ar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  268 -------TAGSDGTFSFWDKD------ARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             -------EecCCceEEEecch------hhhhhhccCcCCCccceeEec
Confidence                   88888999999999      788888999999999999996

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-33  Score=204.44  Aligned_cols=259  Identities=20%  Similarity=0.313  Sum_probs=208.5

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEe
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSG  105 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~  105 (387)
                      ..|.+.|..+...- .+..|||++.|++|+|+.++..-         ..+.+..|.||.+ +|..++|..  .|.+|++|
T Consensus         8 t~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~---------~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLASc   76 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNG---------QSKLLAELTGHSG-PVWKVAWAHPKFGTILASC   76 (299)
T ss_pred             hhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCC---------CceeeeEecCCCC-CeeEEeecccccCcEeeEe
Confidence            36999999887555 88999999999999999998772         1257889999998 899999976  79999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Cee
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE  184 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~  184 (387)
                      +.||.|.||.-++++                                      .........|+..|++++|.|.+ +-+
T Consensus        77 sYDgkVIiWke~~g~--------------------------------------w~k~~e~~~h~~SVNsV~wapheygl~  118 (299)
T KOG1332|consen   77 SYDGKVIIWKEENGR--------------------------------------WTKAYEHAAHSASVNSVAWAPHEYGLL  118 (299)
T ss_pred             ecCceEEEEecCCCc--------------------------------------hhhhhhhhhhcccceeecccccccceE
Confidence            999999999987652                                      22335567899999999999974 257


Q ss_pred             EEEecCCCeEEEEEccCC-CCceeEEeeccCCCeeEEEecCCC--C-----------CeEEEeeCCCeEEEEEeccCCCC
Q 016547          185 FCSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLD--D-----------NLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~-----------~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      |++++.||.|.+.+.+.. .....+....|.-.|++++|.|..  +           ..|++|+.|+.|+||+..+..  
T Consensus       119 LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--  196 (299)
T KOG1332|consen  119 LACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--  196 (299)
T ss_pred             EEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence            889999999999998876 444455677899999999999831  2           579999999999999998742  


Q ss_pred             CCCCceEEeccccceEEEEEEcCCC---CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                        ...-..+++|.+.|..++|.|.-   +..+|++++||++.||..+....+         ....+   +......+..+
T Consensus       197 --w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~---------wk~tl---l~~f~~~~w~v  262 (299)
T KOG1332|consen  197 --WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP---------WKKTL---LEEFPDVVWRV  262 (299)
T ss_pred             --hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---------ccccc---cccCCcceEEE
Confidence              55666789999999999999964   345799999999999988743222         11122   23356789999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .|++.|..|.        .++.|+.|.+|.-+
T Consensus       263 SWS~sGn~La--------Vs~GdNkvtlwke~  286 (299)
T KOG1332|consen  263 SWSLSGNILA--------VSGGDNKVTLWKEN  286 (299)
T ss_pred             EEeccccEEE--------EecCCcEEEEEEeC
Confidence            9999999888        44556899999876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3e-30  Score=188.94  Aligned_cols=309  Identities=19%  Similarity=0.280  Sum_probs=229.5

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccc-ccCCC-CCCCeEEEeccCCCceEEEEEC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA-VLGAT-NSRPDLILTGHQDNAEFALAMC   96 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~h~~~~v~~~~~~   96 (387)
                      .+.++....+.....|++++|+| .+.+.|.|+...+.+|-.......... ..... +......-..|..+.|+|.+|+
T Consensus        20 k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   20 KKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             ccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            34566677778889999999999 888999999999999886544322211 11100 1111222333444579999999


Q ss_pred             CCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc------------CCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK------------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      |+|.++++|+.|++|++..++...+..........            .....+..+..+.+.++..+.+-+...+.....
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            99999999999999999887755433222221111            122223334444455666677777888888999


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee--cc-----CCCeeEEEecCCCCCeEEEeeCCC
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AH-----DADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                      +.+|++.|.++- +-++ .++++|+.|.+|++||++-..  ++..+.  .|     .+.|.+++..| .+++|++|-.|.
T Consensus       179 ~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~ds  253 (350)
T KOG0641|consen  179 LSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADS  253 (350)
T ss_pred             ecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCC
Confidence            999999998873 2234 789999999999999998766  333322  12     25789999999 999999999999


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      ..-+||++.      ++.++.+..|...|.++.|+|...|+| +++.|..|++-|+...-..           .-.+...
T Consensus       254 sc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdla~-----------el~~~vv  315 (350)
T KOG0641|consen  254 SCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDLAH-----------ELPIMVV  315 (350)
T ss_pred             ceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccchhh-----------cCceEEE
Confidence            999999998      899999999999999999999988765 9999999999999753111           0124455


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..|...+..+.|+|..-.++        +.+.|.++.+|-++
T Consensus       316 ~ehkdk~i~~rwh~~d~sfi--------sssadkt~tlwa~~  349 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFI--------SSSADKTATLWALN  349 (350)
T ss_pred             EeccCceEEEEecCccceee--------eccCcceEEEeccC
Confidence            67999999999999876666        77788999999875

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-32  Score=230.57  Aligned_cols=260  Identities=21%  Similarity=0.342  Sum_probs=218.1

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+.++. +-+.|..|.| .++++++|...|.+.++|+...            ..+...+.|.+ +|++++.+||++.++
T Consensus       406 ciRTi~~-~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~------------~l~Eti~AHdg-aIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  406 CIRTITC-GYILASKFVP-GDRYIVLGTKNGELQVFDLASA------------SLVETIRAHDG-AIWSISLSPDNKGFV  470 (888)
T ss_pred             eeEEecc-ccEEEEEecC-CCceEEEeccCCceEEEEeehh------------hhhhhhhcccc-ceeeeeecCCCCceE
Confidence            3444443 3788999999 8899999999999999999988            56667788998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +||.|.+|++||+.--......                     ....      .......++ .-.+.|.|++++||+ .
T Consensus       471 T~saDktVkfWdf~l~~~~~gt---------------------~~k~------lsl~~~rtL-el~ddvL~v~~Spdg-k  521 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGT---------------------QKKV------LSLKHTRTL-ELEDDVLCVSVSPDG-K  521 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcc---------------------ccee------eeeccceEE-eccccEEEEEEcCCC-c
Confidence            9999999999998621110000                     0000      000000111 235679999999999 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      +|+++--|.++++|-+++.+  ....+.+|.-+|.||.++| ++.++++||.|.+|++|-+.-      +.+-.++.+|+
T Consensus       522 ~LaVsLLdnTVkVyflDtlK--FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHd  592 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLK--FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHD  592 (888)
T ss_pred             EEEEEeccCeEEEEEeccee--eeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhccc
Confidence            99999999999999999888  6778889999999999999 999999999999999999998      99999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ..|.++.|.|+.. +|.+++.|+.|+-||-.+.               ..+..+.+|...|.+++.+|+|.+++      
T Consensus       593 DSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vv------  650 (888)
T KOG0306|consen  593 DSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVV------  650 (888)
T ss_pred             CceeEEEEcccce-eEEEecCcceEEeechhhh---------------hhheeeccchheeeeeEEcCCCCeEE------
Confidence            9999999999877 4669999999999998875               45778899999999999999999988      


Q ss_pred             CCCCCCCceEEEEecCC
Q 016547          344 CDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~  360 (387)
                        +++.|.+|++|...+
T Consensus       651 --s~shD~sIRlwE~td  665 (888)
T KOG0306|consen  651 --SSSHDKSIRLWERTD  665 (888)
T ss_pred             --eccCCceeEeeeccC
Confidence              888899999999875

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=8.3e-31  Score=227.62  Aligned_cols=216  Identities=18%  Similarity=0.333  Sum_probs=169.8

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s  104 (387)
                      .+.+|.+.|++++|+|.++++|++|+.||+|++||+.+.....     ....++..+.+|.. .|.+++|+|++ ++|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----NISDPIVHLQGHTK-KVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----ccCcceEEecCCCC-cEEEEEeCcCCCCEEEE
Confidence            3568999999999999777899999999999999997652111     11246778899987 79999999985 68999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|++|++||++++.                                        ....+.+|...|.+++|+|++ .+
T Consensus       144 gs~DgtVrIWDl~tg~----------------------------------------~~~~l~~h~~~V~sla~spdG-~l  182 (493)
T PTZ00421        144 AGADMVVNVWDVERGK----------------------------------------AVEVIKCHSDQITSLEWNLDG-SL  182 (493)
T ss_pred             EeCCCEEEEEECCCCe----------------------------------------EEEEEcCCCCceEEEEEECCC-CE
Confidence            9999999999997532                                        235667899999999999998 88


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCC-eeEEEecCCCCCeEEEee----CCCeEEEEEeccCCCCCCCCceEEe
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGS----ADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      |++++.|+.|++||+++++  ....+..|.+. +..+.|.+ ++..+++++    .|+.|++||+++.     ..++...
T Consensus       183 Latgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~-----~~p~~~~  254 (493)
T PTZ00421        183 LCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKM-----ASPYSTV  254 (493)
T ss_pred             EEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCC-----CCceeEe
Confidence            9999999999999999887  56667777764 34678888 666666544    4799999999973     2344444


Q ss_pred             ccc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          260 EGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       260 ~~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ..+ ...+....|++++..+++++..|+.|++||+...
T Consensus       255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            333 3456667889999865544446999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=9.5e-32  Score=233.68  Aligned_cols=248  Identities=20%  Similarity=0.370  Sum_probs=210.1

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .....||.+.|+++++.. .+++|++|+.|.++++||..++            .+...+.+|.+ .|.++..  ...+++
T Consensus       242 ~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~s-tv~~~~~--~~~~~~  305 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTS-SVRCLTI--DPFLLV  305 (537)
T ss_pred             EeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCc-eEEEEEc--cCceEe
Confidence            334789999999999877 7899999999999999999999            89999999998 5777776  566788


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.|.+|++|+++++.                                        .+..+.+|.++|.++...  + .
T Consensus       306 sgs~D~tVkVW~v~n~~----------------------------------------~l~l~~~h~~~V~~v~~~--~-~  342 (537)
T KOG0274|consen  306 SGSRDNTVKVWDVTNGA----------------------------------------CLNLLRGHTGPVNCVQLD--E-P  342 (537)
T ss_pred             eccCCceEEEEeccCcc----------------------------------------eEEEeccccccEEEEEec--C-C
Confidence            99999999999998543                                        346677799999999998  3 6


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC-CceEEeccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGH  262 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~  262 (387)
                      ++++|+.|++|++||+.+++  ++..+.+|...|+++.+.+ . ..+++|+.|+.|++||+++      . +++..+.+|
T Consensus       343 ~lvsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~------~~~c~~tl~~h  412 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRT------KRKCIHTLQGH  412 (537)
T ss_pred             EEEEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCc------hhhhhhhhcCC
Confidence            89999999999999999888  8999999999999998865 3 9999999999999999998      6 899999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEec
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ...+..+.+.  ++ +|++++.|+.|++||....               ++...+.+ |...|+.+++.  ...++    
T Consensus       413 ~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~---------------~~~~~~~~~~~~~v~~l~~~--~~~il----  468 (537)
T KOG0274|consen  413 TSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEG---------------ECLRTLEGRHVGGVSALALG--KEEIL----  468 (537)
T ss_pred             cccccccccc--cc-eeEeccccccEEEeecccC---------------ceeeeeccCCcccEEEeecC--cceEE----
Confidence            9999777764  34 4679999999999999986               34555666 67889888886  23344    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                          +++.||++++||++      ++++.+.+-
T Consensus       469 ----~s~~~~~~~l~dl~------~~~~~~~l~  491 (537)
T KOG0274|consen  469 ----CSSDDGSVKLWDLR------SGTLIRTLL  491 (537)
T ss_pred             ----EEecCCeeEEEecc------cCchhhhhh
Confidence                45556999999999      677777663

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=2.2e-31  Score=234.98  Aligned_cols=295  Identities=19%  Similarity=0.320  Sum_probs=227.5

Q ss_pred             CCCcEEEEEecCCCCcEEEEec--CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           30 HPGEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      +...|.+|..+| ++..+|||+  .||.++||+.+.--.........-.+.+.....|.+ .|+|+.|+|||++||+|+.
T Consensus        12 ~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             CCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEECCCCCeEeeccC
Confidence            456799999999 999999999  899999999875533222222223467788888998 7999999999999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      |+.|.+|+... .....                     .........+.+.++....+.+|...|..++|+|++ .+|++
T Consensus        90 D~~v~iW~~~~-~~~~~---------------------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS  146 (942)
T KOG0973|consen   90 DRLVMIWERAE-IGSGT---------------------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVS  146 (942)
T ss_pred             cceEEEeeecc-cCCcc---------------------cccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEE
Confidence            99999999874 10000                     000011122445677788999999999999999998 89999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-----
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----  262 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-----  262 (387)
                      ++.|++|.+||.++.+  ....+.+|.+.|..+.|+| -|++||+-+.|++|++|++.+      ....+.+..+     
T Consensus       147 ~s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~~~~  217 (942)
T KOG0973|consen  147 VSLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFEESP  217 (942)
T ss_pred             ecccceEEEEccccce--eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccc------ceeeEeeccchhhCC
Confidence            9999999999999996  7889999999999999999 999999999999999999776      5566655443     


Q ss_pred             -cceEEEEEEcCCCCeeEEEe-cC---CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC-----
Q 016547          263 -SAAVLCVQWSPDKSSVFGSS-AE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS-----  332 (387)
Q Consensus       263 -~~~i~~~~~~~~~~~ll~s~-~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  332 (387)
                       ......+.|||||++|. +. +.   -..+.|.+-.+.               ..-..+.||..++..++|+|.     
T Consensus       218 ~~T~f~RlSWSPDG~~la-s~nA~n~~~~~~~IieR~tW---------------k~~~~LvGH~~p~evvrFnP~lfe~~  281 (942)
T KOG0973|consen  218 LTTFFLRLSWSPDGHHLA-SPNAVNGGKSTIAIIERGTW---------------KVDKDLVGHSAPVEVVRFNPKLFERN  281 (942)
T ss_pred             CcceeeecccCCCcCeec-chhhccCCcceeEEEecCCc---------------eeeeeeecCCCceEEEEeChHHhccc
Confidence             24578999999999754 44 22   234666665443               345567899999999999982     


Q ss_pred             -C---------Ce-EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEeeecC
Q 016547          333 -D---------PW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP  387 (387)
Q Consensus       333 -~---------~~-l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~f~P  387 (387)
                       .         .| ++|       +|+.|++|.||...      ..+++-.+. -....|.+++|+|
T Consensus       282 ~~ng~~~~~~~~y~i~A-------vgSqDrSlSVW~T~------~~RPl~vi~~lf~~SI~DmsWsp  335 (942)
T KOG0973|consen  282 NKNGTSTQPNCYYCIAA-------VGSQDRSLSVWNTA------LPRPLFVIHNLFNKSIVDMSWSP  335 (942)
T ss_pred             cccCCccCCCcceEEEE-------EecCCccEEEEecC------CCCchhhhhhhhcCceeeeeEcC
Confidence             1         12 333       77888999999997      455555443 4567899999987

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-31  Score=196.37  Aligned_cols=224  Identities=21%  Similarity=0.322  Sum_probs=194.9

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      +....+..+.+ +|.++.|+.+|+|.++|+.|++|++|+...+                                     
T Consensus         8 kr~~~l~~~qg-aV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------------------------------------   49 (307)
T KOG0316|consen    8 KRLSILDCAQG-AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------------------------------------   49 (307)
T ss_pred             hhceeeccccc-ceEEEEEccCCCEEEEcCCCceEEeeccccc-------------------------------------
Confidence            45567788887 7999999999999999999999999998643                                     


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                         .++.++.+|..+|..++.+.|+ ..|++|+.|..+.+||+.+++  ..+.+.+|.+.|+.++|+. +...+++|+.|
T Consensus        50 ---~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD  122 (307)
T KOG0316|consen   50 ---ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFNE-ESSVVASGSFD  122 (307)
T ss_pred             ---ceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eeeecccccceeeEEEecC-cceEEEecccc
Confidence               4558889999999999999998 789999999999999999999  7889999999999999999 99999999999


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  316 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  316 (387)
                      ..+++||.++..    .+|++.+......|.++..+..   .+++|+.||+++.||++.+..               .. 
T Consensus       123 ~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l---------------~s-  179 (307)
T KOG0316|consen  123 SSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTL---------------SS-  179 (307)
T ss_pred             ceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeeccee---------------eh-
Confidence            999999999754    6788888888889999998654   356999999999999998622               22 


Q ss_pred             eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547          317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  383 (387)
Q Consensus       317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  383 (387)
                       .-...+|+++.|+++++..+        .++.|+++++-|-.      +|++++...+|.+.=+.+
T Consensus       180 -Dy~g~pit~vs~s~d~nc~L--------a~~l~stlrLlDk~------tGklL~sYkGhkn~eykl  231 (307)
T KOG0316|consen  180 -DYFGHPITSVSFSKDGNCSL--------ASSLDSTLRLLDKE------TGKLLKSYKGHKNMEYKL  231 (307)
T ss_pred             -hhcCCcceeEEecCCCCEEE--------Eeeccceeeecccc------hhHHHHHhcccccceeee
Confidence             22345899999999999998        56677999999999      899999999998754433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.9e-33  Score=219.66  Aligned_cols=273  Identities=19%  Similarity=0.248  Sum_probs=219.4

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      .......|.+.|..+.|.+ +...|+||+.|..|++|++...+          .....++.|.-+ .|+.+.|.++++++
T Consensus       167 ~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g-~it~~d~d~~~~~~  234 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLG-NITSIDFDSDNKHV  234 (459)
T ss_pred             hhhhhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch----------hhhhhhhhccCC-CcceeeecCCCceE
Confidence            3445567999999999999 77889999999999999998772          134556777665 68999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|+.+++|++...                                        +.+.++.+|++.|+++.|.... 
T Consensus       235 iAas~d~~~r~Wnvd~~----------------------------------------r~~~TLsGHtdkVt~ak~~~~~-  273 (459)
T KOG0288|consen  235 IAASNDKNLRLWNVDSL----------------------------------------RLRHTLSGHTDKVTAAKFKLSH-  273 (459)
T ss_pred             EeecCCCceeeeeccch----------------------------------------hhhhhhcccccceeeehhhccc-
Confidence            99999999999999754                                        3347788999999999998776 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ..+++|+.|.+|++||+....  +.+... ..+.+..|..+   ...+++|..|+.|++||.+.      ..+..+...+
T Consensus       274 ~~vVsgs~DRtiK~WDl~k~~--C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~g  341 (459)
T KOG0288|consen  274 SRVVSGSADRTIKLWDLQKAY--CSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLG  341 (459)
T ss_pred             cceeeccccchhhhhhhhhhh--eecccc-ccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecC
Confidence            459999999999999999866  444432 34556666654   56788999999999999998      7888888865


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      . .|+++..++++..++ +++.|..+.+.|++..........         .....+|  ..+.+.|||++.|++     
T Consensus       342 g-~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~sA---------~g~k~as--DwtrvvfSpd~~Yva-----  403 (459)
T KOG0288|consen  342 G-RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTFSA---------EGFKCAS--DWTRVVFSPDGSYVA-----  403 (459)
T ss_pred             c-ceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEeec---------ccccccc--ccceeEECCCCceee-----
Confidence            5 899999999999876 668999999999998643322100         0111222  378999999999998     


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhhhhhccCc--eEEEeeecC
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA--HVISCTSKP  387 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~v~~~~f~P  387 (387)
                         +||.||.|+||++.      ++++...+.....  .|++++|.|
T Consensus       404 ---AGS~dgsv~iW~v~------tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  404 ---AGSADGSVYIWSVF------TGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             ---eccCCCcEEEEEcc------CceEEEEeccCCCCcceEEEEEcC
Confidence               89999999999999      7888777765444  599999987

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-31  Score=201.45  Aligned_cols=242  Identities=19%  Similarity=0.365  Sum_probs=193.6

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC--E
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y  101 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~--~  101 (387)
                      ......|.+.|++++.   ++.++|+|+.|-+|+|||+...            .....+-.|.+ .|+++.|.+.-.  .
T Consensus        36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~------------~qlg~ll~Hag-sitaL~F~~~~S~sh   99 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKR------------KQLGILLSHAG-SITALKFYPPLSKSH   99 (362)
T ss_pred             cccccccccceeEEEe---cceeEeccCCCCcEEEEeccch------------hhhcceecccc-ceEEEEecCCcchhh
Confidence            3344469999999997   5689999999999999999988            67777888887 799999998765  8


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++|+.||.|.+|+...                                        +..+..+++|.+.|+.++.+|.+
T Consensus       100 LlS~sdDG~i~iw~~~~----------------------------------------W~~~~slK~H~~~Vt~lsiHPS~  139 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGS----------------------------------------WELLKSLKAHKGQVTDLSIHPSG  139 (362)
T ss_pred             eeeecCCCcEEEEEcCC----------------------------------------eEEeeeecccccccceeEecCCC
Confidence            99999999999999874                                        44557889999999999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       ++.++.+.|+.+++||+-.++.-....+.   ...+.+.|+| .|.+++.+..++ |-+|.+.+      ......+. 
T Consensus       140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~w~~-~Gd~F~v~~~~~-i~i~q~d~------A~v~~~i~-  206 (362)
T KOG0294|consen  140 -KLALSVGGDQVLRTWNLVRGRVAFVLNLK---NKATLVSWSP-QGDHFVVSGRNK-IDIYQLDN------ASVFREIE-  206 (362)
T ss_pred             -ceEEEEcCCceeeeehhhcCccceeeccC---CcceeeEEcC-CCCEEEEEeccE-EEEEeccc------HhHhhhhh-
Confidence             88999999999999999988843333332   2334599999 999998887665 88898887      55555544 


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE--ccCCCeEEEE
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW--NASDPWTVVS  339 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~s  339 (387)
                      ....+.++.|-..+.  +++|++|+.|.+||....               .+...+.+|...|-++.+  .|++ ++++ 
T Consensus       207 ~~~r~l~~~~l~~~~--L~vG~d~~~i~~~D~ds~---------------~~~~~~~AH~~RVK~i~~~~~~~~-~~lv-  267 (362)
T KOG0294|consen  207 NPKRILCATFLDGSE--LLVGGDNEWISLKDTDSD---------------TPLTEFLAHENRVKDIASYTNPEH-EYLV-  267 (362)
T ss_pred             ccccceeeeecCCce--EEEecCCceEEEeccCCC---------------ccceeeecchhheeeeEEEecCCc-eEEE-
Confidence            235677888876554  458999999999999873               346667899999999984  3444 4555 


Q ss_pred             ecCCCCCCCCCceEEEEecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~  359 (387)
                            |.+.||.|+|||++
T Consensus       268 ------TaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  268 ------TASSDGFIKVWDID  281 (362)
T ss_pred             ------EeccCceEEEEEcc
Confidence                  55556999999998

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.1e-31  Score=211.57  Aligned_cols=294  Identities=18%  Similarity=0.314  Sum_probs=224.0

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCC-----CCCCeEEE-eccCCCceEEEEECCC
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT-----NSRPDLIL-TGHQDNAEFALAMCPT   98 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~-~~h~~~~v~~~~~~~~   98 (387)
                      .....|.-+|.|++++| +..++.+++.||+|.=|++.+++....+....     ...+...- ++|.. .+.+++.++|
T Consensus       136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k-eil~~avS~D  213 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK-EILTLAVSSD  213 (479)
T ss_pred             eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc-eeEEEEEcCC
Confidence            34456999999999999 88899999999999999999987543222210     11111111 47776 6889999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      |+||++|+.|..|.||+.++.                                        +.+..+.+|.+.|.+++|-
T Consensus       214 gkylatgg~d~~v~Iw~~~t~----------------------------------------ehv~~~~ghr~~V~~L~fr  253 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTL----------------------------------------EHVKVFKGHRGAVSSLAFR  253 (479)
T ss_pred             CcEEEecCCCceEEEecCccc----------------------------------------chhhcccccccceeeeeee
Confidence            999999999999999999864                                        3446688999999999997


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ... ..+++++.|..|++|+++...  .+..+.+|.+.|.+|.... .++.+-+|+.|+++++|++.       ......
T Consensus       254 ~gt-~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~-------eesqli  322 (479)
T KOG0299|consen  254 KGT-SELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP-------EESQLI  322 (479)
T ss_pred             cCc-cceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhc-ccceEEeccccceeEEEecc-------ccceee
Confidence            654 679999999999999998877  6778889999999999887 78888888899999999995       455567


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +.++.+.+-|++|-.+..  |++|+.+|.|.+|++.+..............+. +  ....+..+|++++..|..+.++ 
T Consensus       323 frg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~-~--~~~~~~~Witsla~i~~sdL~a-  396 (479)
T KOG0299|consen  323 FRGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE-L--DPVNGNFWITSLAVIPGSDLLA-  396 (479)
T ss_pred             eeCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccCC-c--cccccccceeeeEecccCceEE-
Confidence            788899999999988876  569999999999999884332221111000000 0  0112335899999999776555 


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                             +|+.+|.|++|.+.+-..  .-+++..+. ..+.|++++|++
T Consensus       397 -------sGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  397 -------SGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             -------ecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence                   788889999999984210  134555665 678899999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.4e-31  Score=230.22  Aligned_cols=254  Identities=22%  Similarity=0.402  Sum_probs=220.1

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCCCCEEEEecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      |...+.+..|.   ..++++++.|++|++||..++            ..+.. +.+|.+ .|.++++...+.+|++|+.|
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~------------~~i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D  270 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNG------------YLILTRLVGHFG-GVWGLAFPSGGDKLVSGSTD  270 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccc------------eEEEeeccCCCC-CceeEEEecCCCEEEEEecC
Confidence            56778888876   468999999999999999998            56666 999998 69999998878999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      .++++||+.++.                                        +...+.+|.+.|.++...+   ..+++|
T Consensus       271 ~t~rvWd~~sg~----------------------------------------C~~~l~gh~stv~~~~~~~---~~~~sg  307 (537)
T KOG0274|consen  271 KTERVWDCSTGE----------------------------------------CTHSLQGHTSSVRCLTIDP---FLLVSG  307 (537)
T ss_pred             CcEEeEecCCCc----------------------------------------EEEEecCCCceEEEEEccC---ceEeec
Confidence            999999987654                                        4478889999999998864   468889


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      +.|.+|++|++.++.  .+..+.+|..+|+++..+   +.++++|+.|++|++||..+      ++++.++.+|...|.+
T Consensus       308 s~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~s  376 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYS  376 (537)
T ss_pred             cCCceEEEEeccCcc--eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEE
Confidence            999999999999888  677777799999999984   78999999999999999998      9999999999999999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                      +.+.+. . .+.+|+.|+.|++||+++..              +++..+.+|...+..+.+.  ++.|+        +++
T Consensus       377 l~~~~~-~-~~~Sgs~D~~IkvWdl~~~~--------------~c~~tl~~h~~~v~~l~~~--~~~Lv--------s~~  430 (537)
T KOG0274|consen  377 LIVDSE-N-RLLSGSLDTTIKVWDLRTKR--------------KCIHTLQGHTSLVSSLLLR--DNFLV--------SSS  430 (537)
T ss_pred             EEecCc-c-eEEeeeeccceEeecCCchh--------------hhhhhhcCCcccccccccc--cceeE--------ecc
Confidence            988775 4 35699999999999999852              3567788999888777664  55666        788


Q ss_pred             CCceEEEEecCCCcccccchhhhhhhc-cCceEEEeee
Q 016547          349 GGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTS  385 (387)
Q Consensus       349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f  385 (387)
                      .|++|++||..      .+++++++.+ |...|..+++
T Consensus       431 aD~~Ik~WD~~------~~~~~~~~~~~~~~~v~~l~~  462 (537)
T KOG0274|consen  431 ADGTIKLWDAE------EGECLRTLEGRHVGGVSALAL  462 (537)
T ss_pred             ccccEEEeecc------cCceeeeeccCCcccEEEeec
Confidence            88999999999      8999999998 6788888776

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=4.5e-31  Score=211.69  Aligned_cols=229  Identities=22%  Similarity=0.412  Sum_probs=194.2

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EP  100 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~  100 (387)
                      ....++.+|.++=+.++|++...-.|++|+.|++|++||+.......     ....+...+.+|++ .|..++|++- ..
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-----~~~~p~~~~~~h~~-~VeDV~~h~~h~~  241 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-----KVVDPKTIFSGHED-VVEDVAWHPLHED  241 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----ccccceEEeecCCc-ceehhhccccchh
Confidence            34457889999889999999888899999999999999998764321     12257788999998 7999999994 56


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .+++++.|+.+.|||++..                                      +.++.....+|..+|.|++|+|.
T Consensus       242 lF~sv~dd~~L~iwD~R~~--------------------------------------~~~~~~~~~ah~~~vn~~~fnp~  283 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSN--------------------------------------TSKPSHSVKAHSAEVNCVAFNPF  283 (422)
T ss_pred             hheeecCCCeEEEEEcCCC--------------------------------------CCCCcccccccCCceeEEEeCCC
Confidence            7889999999999999852                                      12233566789999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC--------CC
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------GV  252 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------~~  252 (387)
                      ++.+||+|+.|++|.+||+|.... .+..+.+|...|.++.|+|.....||+++.|+.+.+||+......        +.
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp  362 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP  362 (422)
T ss_pred             CCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC
Confidence            989999999999999999999875 577888999999999999988899999999999999999864221        11


Q ss_pred             CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .+++..-.+|...|..+.|+|+.++++++.++|+.+.||++..
T Consensus       363 pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  363 PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            3345666789999999999999999999999999999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-30  Score=203.00  Aligned_cols=286  Identities=15%  Similarity=0.186  Sum_probs=215.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|++.|+|+.|+. ++.+||||+.+|.|+||+..++            .....+...-+ .+.=+.|+|.+..|+.
T Consensus       100 ~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg------------~~~~~~~~e~~-dieWl~WHp~a~illA  165 (399)
T KOG0296|consen  100 GELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTG------------GEQWKLDQEVE-DIEWLKWHPRAHILLA  165 (399)
T ss_pred             eEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccC------------ceEEEeecccC-ceEEEEecccccEEEe
Confidence            45669999999999999 9999999999999999999998            44444543333 4678999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCC--ceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSG--SIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSS  181 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  181 (387)
                      |+.||.+-+|.+.++.....+.-.......+..  ..........++.+..|+..+..++..+.. ...+..++.++..+
T Consensus       166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~  245 (399)
T KOG0296|consen  166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG  245 (399)
T ss_pred             ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence            999999999999885332222221111111100  011112223478889999999988877763 23457788888887


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEee--------ccCCCeeEEEecCC--CCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                       ..++.|+.++.+++-+..+++  .+....        .+...+.++.+.|.  .-.+.|+|+.||+|.|||+..     
T Consensus       246 -~~~~~g~~e~~~~~~~~~sgK--Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-----  317 (399)
T KOG0296|consen  246 -STLTKGNSEGVACGVNNGSGK--VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-----  317 (399)
T ss_pred             -ceeEeccCCccEEEEccccce--EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-----
Confidence             789999999999998887776  222222        34444555555442  456889999999999999997     


Q ss_pred             CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                       .+..+.+ .|+.+|..+.|-+ ..+|+ +++.+|.|+.||.+++               ++++.+.||...|.+++.+|
T Consensus       318 -~~~R~~c-~he~~V~~l~w~~-t~~l~-t~c~~g~v~~wDaRtG---------------~l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  318 -STLRHIC-EHEDGVTKLKWLN-TDYLL-TACANGKVRQWDARTG---------------QLKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             -chhheec-cCCCceEEEEEcC-cchhe-eeccCceEEeeecccc---------------ceEEEEecCchheeEEEEcC
Confidence             4544444 4899999999998 56554 8888999999999997               67888999999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.+.++        |+|.|++.+||++.
T Consensus       379 ~~~~vv--------T~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  379 QKRLVV--------TVSDDNTALVFEVP  398 (399)
T ss_pred             CCcEEE--------EecCCCeEEEEecC
Confidence            988776        77777999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-30  Score=218.38  Aligned_cols=256  Identities=18%  Similarity=0.362  Sum_probs=212.9

Q ss_pred             EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEc
Q 016547           37 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  116 (387)
Q Consensus        37 i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~  116 (387)
                      +.|+.  .+.||+|.. ..|++|+..++            ........+.+ .|+++.|+++|++|++|..+|.|.|||.
T Consensus       183 ldWss--~n~laValg-~~vylW~~~s~------------~v~~l~~~~~~-~vtSv~ws~~G~~LavG~~~g~v~iwD~  246 (484)
T KOG0305|consen  183 LDWSS--ANVLAVALG-QSVYLWSASSG------------SVTELCSFGEE-LVTSVKWSPDGSHLAVGTSDGTVQIWDV  246 (484)
T ss_pred             hhccc--CCeEEEEec-ceEEEEecCCC------------ceEEeEecCCC-ceEEEEECCCCCEEEEeecCCeEEEEeh
Confidence            44543  457777754 47999999988            33334444444 7999999999999999999999999998


Q ss_pred             CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCCCeeEEEecCCCeEE
Q 016547          117 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLI  195 (387)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~  195 (387)
                      .+....                                        ..+.+ |...|.+++|..   ..+.+|+.++.|.
T Consensus       247 ~~~k~~----------------------------------------~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~  283 (484)
T KOG0305|consen  247 KEQKKT----------------------------------------RTLRGSHASRVGSLAWNS---SVLSSGSRDGKIL  283 (484)
T ss_pred             hhcccc----------------------------------------ccccCCcCceeEEEeccC---ceEEEecCCCcEE
Confidence            764332                                        44455 999999999983   5799999999999


Q ss_pred             EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547          196 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  275 (387)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (387)
                      .+|++..+.... ...+|...|..++|++ ++.++|+|+.|+.+.|||...      ..++..+..|...|.+++|+|-.
T Consensus       284 ~~dvR~~~~~~~-~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP~q  355 (484)
T KOG0305|consen  284 NHDVRISQHVVS-TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCPWQ  355 (484)
T ss_pred             EEEEecchhhhh-hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCCCc
Confidence            999998874322 5788999999999999 999999999999999999977      78899999999999999999988


Q ss_pred             CeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceE
Q 016547          276 SSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL  353 (387)
Q Consensus       276 ~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i  353 (387)
                      +.|||+|+  .|+.|++||...+..               +.. ..-...|.+|.|++..+-++.+      -|..++.|
T Consensus       356 ~~lLAsGGGs~D~~i~fwn~~~g~~---------------i~~-vdtgsQVcsL~Wsk~~kEi~st------hG~s~n~i  413 (484)
T KOG0305|consen  356 SGLLATGGGSADRCIKFWNTNTGAR---------------IDS-VDTGSQVCSLIWSKKYKELLST------HGYSENQI  413 (484)
T ss_pred             cCceEEcCCCcccEEEEEEcCCCcE---------------ecc-cccCCceeeEEEcCCCCEEEEe------cCCCCCcE
Confidence            88999876  699999999997522               111 2345689999999999888765      46677899


Q ss_pred             EEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          354 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       354 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .||++.      +...+..+.+|...|..++++|
T Consensus       414 ~lw~~p------s~~~~~~l~gH~~RVl~la~SP  441 (484)
T KOG0305|consen  414 TLWKYP------SMKLVAELLGHTSRVLYLALSP  441 (484)
T ss_pred             EEEecc------ccceeeeecCCcceeEEEEECC
Confidence            999999      7889999999999999999998

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.5e-31  Score=232.49  Aligned_cols=261  Identities=22%  Similarity=0.374  Sum_probs=209.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccc-------cCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAV-------LGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      .+...|.+.|+|+.|+| +|++||+|++|+.|.||+.... .....       .....++....+.+|.. .|..++|+|
T Consensus        63 ~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-DV~Dv~Wsp  139 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDS-DVLDVNWSP  139 (942)
T ss_pred             eeeccccCceeEEEECC-CCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCC-ccceeccCC
Confidence            45557999999999999 9999999999999999998841 11111       22334568889999998 689999999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      ++.+|++++.|++|.+|+..+                                        ++.+..+.+|...|..+.|
T Consensus       140 ~~~~lvS~s~DnsViiwn~~t----------------------------------------F~~~~vl~~H~s~VKGvs~  179 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKT----------------------------------------FELLKVLRGHQSLVKGVSW  179 (942)
T ss_pred             CccEEEEecccceEEEEcccc----------------------------------------ceeeeeeecccccccceEE
Confidence            999999999999999999875                                        3455888999999999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCCCCeEEEeeC----CCeEEEEEeccC
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNL  247 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~  247 (387)
                      .|-| ++|++-+.|++|++|++.+..  ..+.+..      ....+..+.|+| +|.+|++...    -..+.|.+..+ 
T Consensus       180 DP~G-ky~ASqsdDrtikvwrt~dw~--i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~t-  254 (942)
T KOG0973|consen  180 DPIG-KYFASQSDDRTLKVWRTSDWG--IEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGT-  254 (942)
T ss_pred             CCcc-CeeeeecCCceEEEEEcccce--eeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCC-
Confidence            9999 899999999999999976643  3333322      234578999999 9999998754    34688888877 


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCC--------C-------Ce-eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  311 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~-------~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  311 (387)
                           ++.-..+-+|.+++.++.|+|.        |       .| ++|+|+.|+.|.||.......             
T Consensus       255 -----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-------------  316 (942)
T KOG0973|consen  255 -----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-------------  316 (942)
T ss_pred             -----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-------------
Confidence                 8888889999999999999873        1       11 789999999999999865321             


Q ss_pred             eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                       ++..+.-....|.+|+|+|||-.|+        .++.||+|.+..+..
T Consensus       317 -l~vi~~lf~~SI~DmsWspdG~~Lf--------acS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  317 -LFVIHNLFNKSIVDMSWSPDGFSLF--------ACSLDGTVALIHFEE  356 (942)
T ss_pred             -hhhhhhhhcCceeeeeEcCCCCeEE--------EEecCCeEEEEEcch
Confidence             2222333567899999999998776        455669999999984

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.5e-32  Score=224.53  Aligned_cols=256  Identities=19%  Similarity=0.307  Sum_probs=216.4

Q ss_pred             cCCCcEE---EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           29 IHPGEVN---RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        29 ~h~~~v~---~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .|...|.   .+....+++++|.||+.||.|++|++........      ......++.|.+ .|+.+....+++.|+++
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsD-WVNDiiL~~~~~tlIS~   91 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSD-WVNDIILCGNGKTLISA   91 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHh-HHhhHHhhcCCCceEEe
Confidence            3555666   6666667889999999999999999887632211      124678889998 89999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE-ccCCCee
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF-CPSSAQE  184 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~  184 (387)
                      |.|-+|++|+.....                                      ..++.++..|++-|.|+++ .++. .+
T Consensus        92 SsDtTVK~W~~~~~~--------------------------------------~~c~stir~H~DYVkcla~~ak~~-~l  132 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDN--------------------------------------TFCMSTIRTHKDYVKCLAYIAKNN-EL  132 (735)
T ss_pred             cCCceEEEeecccCc--------------------------------------chhHhhhhcccchheeeeecccCc-ee
Confidence            999999999987532                                      1234677899999999999 5665 89


Q ss_pred             EEEecCCCeEEEEEccCCCC--------ceeEEee-ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          185 FCSVGDDSCLILWDARVGTS--------PVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~--------~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +++|+-|+.|.+||+.++..        .....+. ++..+|++++.++ .+..+++|+..+.+++||.++      .+.
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt------~~k  205 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT------CKK  205 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc------ccc
Confidence            99999999999999997632        1112223 7888999999999 899999999999999999999      899


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +..+++|...|..+..++||..++ +++.||+|++||+...               .++.++..|...|.++..+|+-.+
T Consensus       206 imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  206 IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc---------------ceeeeEEeccCceEEEeeCCCcce
Confidence            999999999999999999999865 9999999999999875               567888999999999999999998


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCCC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      +.        +|+.||.|..=|+++.
T Consensus       270 vY--------sG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  270 VY--------SGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EE--------ecCCCCcEEecccCCc
Confidence            88        8999999999999863

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-31  Score=211.70  Aligned_cols=242  Identities=21%  Similarity=0.307  Sum_probs=201.3

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d  108 (387)
                      ..+.|.++.|-. +|++||.|...|.|+|+|..+.            ..++.+.+|+. +|..+.|+|+ ++.|++|+.|
T Consensus        67 Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r------------~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen   67 FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR------------VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             hccceeEEEeec-CCeEEEccCCcCcEEEeccccH------------HHHHHHhhccC-ceeEEEecccCCeEEEecCCC
Confidence            567889999888 9999999999999999996664            56778999998 8999999995 5567889999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +.+++||+.+...                                        ...+.+|++-|.|.+|+|..+.++++|
T Consensus       133 ~v~k~~d~s~a~v----------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  133 KVVKYWDLSTAYV----------------------------------------QAELSGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             ceEEEEEcCCcEE----------------------------------------EEEecCCcceeEeeccccCCCeEEEec
Confidence            9999999986421                                        256789999999999999987899999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      +.||.|++||++... ..+ ....|..+|..+.+-| .+.++++++ .+.|++||+.+.     ++.+.....|...|+|
T Consensus       173 sYDg~vrl~DtR~~~-~~v-~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G-----~qll~~~~~H~KtVTc  243 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLT-SRV-VELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTG-----GQLLTSMFNHNKTVTC  243 (487)
T ss_pred             CCCceEEEEEeccCC-cee-EEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCC-----ceehhhhhcccceEEE
Confidence            999999999999875 233 3447999999999999 888988876 457999999973     5666666669999999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                      +.+..++..|+ +++-|+.+++||+.+.               +.+.. -.-.++|.+++.+|+++.++        .|.
T Consensus       244 L~l~s~~~rLl-S~sLD~~VKVfd~t~~---------------Kvv~s-~~~~~pvLsiavs~dd~t~v--------iGm  298 (487)
T KOG0310|consen  244 LRLASDSTRLL-SGSLDRHVKVFDTTNY---------------KVVHS-WKYPGPVLSIAVSPDDQTVV--------IGM  298 (487)
T ss_pred             EEeecCCceEe-ecccccceEEEEccce---------------EEEEe-eecccceeeEEecCCCceEE--------Eec
Confidence            99999998765 9999999999997764               23333 24567999999999999888        677


Q ss_pred             CCceEEEEecC
Q 016547          349 GGGTLQIWRMS  359 (387)
Q Consensus       349 ~dg~i~iw~~~  359 (387)
                      .||.+.+=+..
T Consensus       299 snGlv~~rr~~  309 (487)
T KOG0310|consen  299 SNGLVSIRRRE  309 (487)
T ss_pred             ccceeeeehhh
Confidence            77888777443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.8e-30  Score=205.92  Aligned_cols=264  Identities=17%  Similarity=0.319  Sum_probs=216.3

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ..|.++...| ....++||+.|..+.++|....            +.+..+.||.. .|+.+.++|+...+++++.|..|
T Consensus       220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i  285 (506)
T KOG0289|consen  220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSN------------QILATLKGHTK-KITSVKFHKDLDTVITASADEII  285 (506)
T ss_pred             CCeeEEeecC-CCCcceecCCCCceEEEecchh------------hhhhhccCcce-EEEEEEeccchhheeecCCcceE
Confidence            5688888888 4788999999999999999988            88899999998 79999999999999999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      ++|......                                        .......|.++|+.+..+|.| .+|++++.|
T Consensus       286 ~vws~~~~s----------------------------------------~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d  324 (506)
T KOG0289|consen  286 RVWSVPLSS----------------------------------------EPTSSRPHEEPVTGLSLHPTG-EYLLSASND  324 (506)
T ss_pred             Eeecccccc----------------------------------------CccccccccccceeeeeccCC-cEEEEecCC
Confidence            999986432                                        124567899999999999999 889999999


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  271 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (387)
                      |+..+.|++++.......-....-.+++.+|+| ||.+|.+|..||.|++||+.+      ...+..|.+|.++|..++|
T Consensus       325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEe
Confidence            999999999998422222222334589999999 999999999999999999999      7788999999999999999


Q ss_pred             cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547          272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  350 (387)
Q Consensus       272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d  350 (387)
                      +.+|-+ ||++++|+.|++||+++....               .++. ....++.++.|.+.|.+|++        +|.|
T Consensus       398 sENGY~-Lat~add~~V~lwDLRKl~n~---------------kt~~l~~~~~v~s~~fD~SGt~L~~--------~g~~  453 (506)
T KOG0289|consen  398 SENGYW-LATAADDGSVKLWDLRKLKNF---------------KTIQLDEKKEVNSLSFDQSGTYLGI--------AGSD  453 (506)
T ss_pred             ccCceE-EEEEecCCeEEEEEehhhccc---------------ceeeccccccceeEEEcCCCCeEEe--------ecce
Confidence            999976 679999999999999986321               1111 12237999999999999984        4444


Q ss_pred             ceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          351 GTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       351 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      =.|++++-..    ++..++.++..|.+..+.+.|
T Consensus       454 l~Vy~~~k~~----k~W~~~~~~~~~sg~st~v~F  484 (506)
T KOG0289|consen  454 LQVYICKKKT----KSWTEIKELADHSGLSTGVRF  484 (506)
T ss_pred             eEEEEEeccc----ccceeeehhhhcccccceeee
Confidence            5555555332    246677888888888887777

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.3e-31  Score=227.98  Aligned_cols=240  Identities=22%  Similarity=0.468  Sum_probs=200.4

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSV  111 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i  111 (387)
                      .+..++|.....++|||++..|.|.+||+....         ..+.+..+..|+. .+++++|++. ..+|++|+.||.|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~---------rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~v  158 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI---------RNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTV  158 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccc---------cchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceE
Confidence            456788888788999999999999999998731         1256678899997 6899999985 5678999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      ++||++....                                        ..++.+..+.|.+|+|+|..++.|+++...
T Consensus       159 K~~DlR~~~S----------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  159 KCWDLRSKKS----------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             EEEeeecccc----------------------------------------cccccccchhhhceeeccCCCceEEEecCC
Confidence            9999985432                                        245566788999999999888999999999


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  271 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (387)
                      |.+.+||++.... +...+.+|.++|.|+.|+| ++.+||+|+.|+.|+|||+....    ..++.++. ...++.++.|
T Consensus       199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~----~~~~~tIn-Tiapv~rVkW  271 (839)
T KOG0269|consen  199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR----AKPKHTIN-TIAPVGRVKW  271 (839)
T ss_pred             ceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC----ccceeEEe-ecceeeeeee
Confidence            9999999998774 5677889999999999999 99999999999999999998632    45555665 3578999999


Q ss_pred             cCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          272 SPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       272 ~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      -|..++.||+++  .|-.|+|||++.+-.              ...++..|...++.++|......++.+||.|
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYI--------------P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYI--------------PYATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccc--------------cceeeeccCccccceeccCCCceeeEeecCc
Confidence            999999898887  477899999997522              3566789999999999988667777766666

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=1.1e-29  Score=189.57  Aligned_cols=257  Identities=19%  Similarity=0.320  Sum_probs=209.7

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      +.+.....+|.+.|-.++|.|...+++++++.|.+|++||+...            ++........++  .-+.|+|+|.
T Consensus        54 ~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~------------k~~~~i~~~~en--i~i~wsp~g~  119 (313)
T KOG1407|consen   54 FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG------------KCTARIETKGEN--INITWSPDGE  119 (313)
T ss_pred             hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC------------cEEEEeeccCcc--eEEEEcCCCC
Confidence            44455667899999999999999999999999999999999999            677666665553  3799999999


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      +++.++.|..|.+.|.++.+....                                         ....-.+..+.|+-+
T Consensus       120 ~~~~~~kdD~it~id~r~~~~~~~-----------------------------------------~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen  120 YIAVGNKDDRITFIDARTYKIVNE-----------------------------------------EQFKFEVNEISWNNS  158 (313)
T ss_pred             EEEEecCcccEEEEEecccceeeh-----------------------------------------hcccceeeeeeecCC
Confidence            999999999999999986433211                                         122446778899866


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      + .+|+.....|+|.|.....-+  .+..+..|.....||.|+| +|++||+|+.|..+.+||+..      ..+++.+.
T Consensus       159 n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~E------LiC~R~is  228 (313)
T KOG1407|consen  159 N-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDE------LICERCIS  228 (313)
T ss_pred             C-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEECC-CCceEeeccccceeeccChhH------hhhheeec
Confidence            6 666666667999999887655  6788899999999999999 999999999999999999998      88999999


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      .++-+|..+.|+-+|++ ||++++|-.|-|=+++++.+.               .. ..+.++...++|+|....|+.+|
T Consensus       229 RldwpVRTlSFS~dg~~-lASaSEDh~IDIA~vetGd~~---------------~e-I~~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  229 RLDWPVRTLSFSHDGRM-LASASEDHFIDIAEVETGDRV---------------WE-IPCEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             cccCceEEEEeccCcce-eeccCccceEEeEecccCCeE---------------EE-eeccCCceeEEecCCCceeeEEe
Confidence            99999999999999995 799999999999999986442               21 34677889999999888777776


Q ss_pred             cCCC-CCCCCCceEEEEecC
Q 016547          341 SDDC-DSTGGGGTLQIWRMS  359 (387)
Q Consensus       341 s~d~-~tg~~dg~i~iw~~~  359 (387)
                      ++-- -+.-..|+|++|-+.
T Consensus       292 ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  292 DDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCCCCccccccceeEEecCC
Confidence            5420 022344888888765

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.6e-30  Score=222.51  Aligned_cols=263  Identities=17%  Similarity=0.310  Sum_probs=183.9

Q ss_pred             EEe-ccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCC--------------cccCCCC---CCceecc
Q 016547           81 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA--------------TAKSAGS---SGSIIKQ  142 (387)
Q Consensus        81 ~~~-~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--------------~~~~~~~---~~~~~~~  142 (387)
                      .+. .|.+ .|+++.|++||+|||+|+.|+.|+||.+............              .+.....   .......
T Consensus       261 e~~~ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  261 EISNAHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccccccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            445 7777 7999999999999999999999999998762211000000              0000000   0000000


Q ss_pred             CCCCCCCCCCC---CCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeE
Q 016547          143 SPKPGDGNDKA---ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC  219 (387)
Q Consensus       143 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  219 (387)
                      ..........+   .-.-..+++..+.+|.+.|.++.|+.++  +|++++.|.+|++|++...+  ++..+ .|..-|+|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc  414 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC  414 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence            00111111111   1122446788899999999999999875  89999999999999999777  67776 59999999


Q ss_pred             EEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547          220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  299 (387)
Q Consensus       220 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  299 (387)
                      ++|+|.|.++|++|+.||.||||++..       ..+........-|++++|.|+|++ .+.|+.+|.+++|+.....-.
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEE
Confidence            999999999999999999999999985       455555555688999999999997 458999999999999874322


Q ss_pred             eccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc
Q 016547          300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  378 (387)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  378 (387)
                      ... ...      ...........|+++.|.|...- ++        +.+.|..|||||.+      +..++..++|+..
T Consensus       487 ~~~-~I~------~~~~Kk~~~~rITG~Q~~p~~~~~vL--------VTSnDSrIRI~d~~------~~~lv~KfKG~~n  545 (712)
T KOG0283|consen  487 SDF-HIR------LHNKKKKQGKRITGLQFFPGDPDEVL--------VTSNDSRIRIYDGR------DKDLVHKFKGFRN  545 (712)
T ss_pred             Eee-eEe------eccCccccCceeeeeEecCCCCCeEE--------EecCCCceEEEecc------chhhhhhhccccc
Confidence            111 000      00000111228999999987654 55        34556999999998      6777888876654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.6e-29  Score=193.08  Aligned_cols=280  Identities=19%  Similarity=0.344  Sum_probs=208.9

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEe
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSG  105 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~  105 (387)
                      .+|.+-|+|+.|.+ .|+.+|||+.|++|+|||.+..        .....+....+.|.+ .|..+.|.+  -|+.+|+|
T Consensus        10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~--------s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~c   79 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSD--------SGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATC   79 (361)
T ss_pred             cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCC--------CCceEEeeeEEecCC-cEEEEEecCccccceEEEE
Confidence            37999999999999 9999999999999999998655        234567778899998 578999965  48999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Cee
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE  184 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~  184 (387)
                      +.|+++.||.-.......                               .........++......|+++.|.|.. +-.
T Consensus        80 S~Drtv~iWEE~~~~~~~-------------------------------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEA-------------------------------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK  128 (361)
T ss_pred             ecCCceeeeeeccccccc-------------------------------ccceeEEEEEeecCCcceeEEEecchhcceE
Confidence            999999999864221110                               112334456677778899999999962 267


Q ss_pred             EEEecCCCeEEEEEccCCC----CceeEE-------eeccCCCeeEEEecCC--CCCeEEEeeCC-----CeEEEEEecc
Q 016547          185 FCSVGDDSCLILWDARVGT----SPVIKV-------EKAHDADLHCVDWNPL--DDNLILTGSAD-----NSVRMFDRRN  246 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~----~~~~~~-------~~~~~~~i~~~~~~~~--~~~~l~~~~~d-----g~i~~~d~~~  246 (387)
                      +++++.||.++||+.-..-    .+....       ...+..+..|+.|+|.  ...+||+|+.+     +.+.||....
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            9999999999999865421    111112       2246667889999873  24688888876     5788887765


Q ss_pred             CCCCCCCCceEEeccccceEEEEEEcCCC---CeeEEEecCCCeEEEEeCCCCCceeccCC-----CCCCCCceeeeeec
Q 016547          247 LTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGP-----RTTNYPAGLFFQHA  318 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~  318 (387)
                      ..+.  ...+.++.+|..+|+.++|.|+-   -+++|+++.|| |+||.+........+..     .....+...+..+.
T Consensus       209 ~~rK--w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  209 NGRK--WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             Ccce--eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            3210  45667788999999999999973   34789999999 99999986432222111     11224456677788


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .|.+.|..+.|+-.|..|.        +.|.||.||+|..+
T Consensus       286 ~H~~~VWrv~wNmtGtiLs--------StGdDG~VRLWkan  318 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILS--------STGDDGCVRLWKAN  318 (361)
T ss_pred             CCCCceEEEEEeeeeeEEe--------ecCCCceeeehhhh
Confidence            9999999999999887666        77778999999876

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=6.5e-29  Score=216.79  Aligned_cols=239  Identities=15%  Similarity=0.200  Sum_probs=174.1

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-EE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VL  103 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l~  103 (387)
                      ..+.+|.+.|.+++|+|.++++||+|+.||+|+|||+.+......    ....+...+.+|.. .|.+++|+|++.. |+
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i~~p~~~L~gH~~-~V~sVaf~P~g~~iLa  142 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EIKDPQCILKGHKK-KISIIDWNPMNYYIMC  142 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----ccccceEEeecCCC-cEEEEEECCCCCeEEE
Confidence            456689999999999996688999999999999999976421100    00134567888987 7999999999876 57


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|++|++||++++...                                        ..+. |...|.+++|+|+| .
T Consensus       143 SgS~DgtIrIWDl~tg~~~----------------------------------------~~i~-~~~~V~SlswspdG-~  180 (568)
T PTZ00420        143 SSGFDSFVNIWDIENEKRA----------------------------------------FQIN-MPKKLSSLKWNIKG-N  180 (568)
T ss_pred             EEeCCCeEEEEECCCCcEE----------------------------------------EEEe-cCCcEEEEEECCCC-C
Confidence            8999999999999864321                                        2222 45679999999999 7


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEE-----EecCCCCCeEEEeeCCC----eEEEEEeccCCCCCCCC
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV-----DWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~  254 (387)
                      +|++++.|+.|++||+++++  ....+.+|.+.+.+.     .|++ ++.++++++.|+    .|+|||++..     ..
T Consensus       181 lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~-----~~  252 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNT-----TS  252 (568)
T ss_pred             EEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCC-----CC
Confidence            89999999999999999887  566778888765433     3457 788888877764    7999999963     45


Q ss_pred             ceEEec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          255 PINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       255 ~~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                      ++..+.  .+.+.+......+++. ++++|+.|+.|++|++.....             ..+.. ..+..++.+++|.|+
T Consensus       253 pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~-------------~~l~~-~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        253 ALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI-------------RKVNE-YKSCSPFRSFGFLPK  317 (568)
T ss_pred             ceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCcE-------------Eeecc-cccCCCccceEEccc
Confidence            555443  2233333333344465 577999999999999976421             11222 225567788888886


Q ss_pred             C
Q 016547          333 D  333 (387)
Q Consensus       333 ~  333 (387)
                      .
T Consensus       318 r  318 (568)
T PTZ00420        318 Q  318 (568)
T ss_pred             c
Confidence            4

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-30  Score=222.14  Aligned_cols=277  Identities=14%  Similarity=0.265  Sum_probs=213.7

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--ceEEEEECC-CCCEEEEecC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCP-TEPYVLSGGK  107 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~-~~~~l~s~~~  107 (387)
                      .....+|.-.+ +-..++.++.. .++|+.+.......        ++..........  .+..+.|.. +.++|++++.
T Consensus        39 k~~~nAIs~nr-~~~qiv~AGrs-~lklyai~~~~~~~--------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~  108 (839)
T KOG0269|consen   39 KAKANAISVNR-DINQIVVAGRS-LLKLYAINPNDFSE--------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST  108 (839)
T ss_pred             ccccceEeecC-CcceeEEeccc-ceeeEeeCcccCCc--------ceeeecccccceeeehhhcccccchhhhheeecC
Confidence            45667777777 55566666654 67888776542111        111111111110  134567764 4678999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      .|.|.+||+....                                     ..+.+..+..|...++++.|++..+++|++
T Consensus       109 nG~i~vWdlnk~~-------------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliS  151 (839)
T KOG0269|consen  109 NGVISVWDLNKSI-------------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILIS  151 (839)
T ss_pred             CCcEEEEecCccc-------------------------------------cchhhhHhhhhccceeeeeeccCCccEEEe
Confidence            9999999997521                                     123346788999999999999999999999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  267 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~  267 (387)
                      |++||+|++||++..+  ....+.+....|+.++|+|..++.|+++.+.|.+++||+|.+     .++...+.+|.++|.
T Consensus       152 GSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  152 GSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVL  224 (839)
T ss_pred             cCCCceEEEEeeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceE
Confidence            9999999999999887  345555677889999999988999999999999999999985     678889999999999


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      |+.|+|++.+ ||+|+.|+.|+|||+......             ...+. ....+|..+.|-|..++.+++|+     -
T Consensus       225 c~nwhPnr~~-lATGGRDK~vkiWd~t~~~~~-------------~~~tI-nTiapv~rVkWRP~~~~hLAtcs-----m  284 (839)
T KOG0269|consen  225 CLNWHPNREW-LATGGRDKMVKIWDMTDSRAK-------------PKHTI-NTIAPVGRVKWRPARSYHLATCS-----M  284 (839)
T ss_pred             EEeecCCCce-eeecCCCccEEEEeccCCCcc-------------ceeEE-eecceeeeeeeccCccchhhhhh-----c
Confidence            9999997774 799999999999999864322             11111 12358999999999999999884     4


Q ss_pred             CCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          348 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       348 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      ..|-.|+|||++.     ..-+..++..|...++.++|.
T Consensus       285 v~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  285 VVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             cccceEEEEeecc-----ccccceeeeccCccccceecc
Confidence            5679999999995     356778899999999988874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-30  Score=198.57  Aligned_cols=236  Identities=19%  Similarity=0.324  Sum_probs=182.8

Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      ....+..|.. ++.+-+|++||.++++|+.|.+|++.|++.........                       .+...+..
T Consensus       104 Et~ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~-----------------------em~~~~~q  159 (430)
T KOG0640|consen  104 ETKYLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPK-----------------------EMISGDTQ  159 (430)
T ss_pred             ceEEEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh-----------------------hhccCCcc
Confidence            3456778887 78999999999999999999999999997421111000                       00000111


Q ss_pred             CC-CCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          158 SV-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       158 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      .. -.++++..|.++|+++.|+|.. .+|++++.|++|+++|+................+|.++.|+| .|.+|++|...
T Consensus       160 a~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdH  237 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDH  237 (430)
T ss_pred             cCCceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCC
Confidence            11 2457788999999999999998 899999999999999997644211112223456899999999 99999999999


Q ss_pred             CeEEEEEeccCCCCCCCCceEEe---ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCcee
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  313 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  313 (387)
                      ..+++||+.+      .++...-   ..|.+.|+++.+++.++ |.++++.||.|++||--..               .+
T Consensus       238 p~~rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~---------------rC  295 (430)
T KOG0640|consen  238 PTLRLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSN---------------RC  295 (430)
T ss_pred             CceeEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccH---------------HH
Confidence            9999999998      6665544   36889999999999999 6789999999999997664               22


Q ss_pred             eeee-ccCCC-CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547          314 FFQH-AGHRD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  375 (387)
Q Consensus       314 ~~~~-~~~~~-~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~  375 (387)
                      +.++ ..|.+ .|.+..|..+++|++        +.|.|..+++|.+.      ++.++.+..|
T Consensus       296 v~t~~~AH~gsevcSa~Ftkn~kyiL--------sSG~DS~vkLWEi~------t~R~l~~YtG  345 (430)
T KOG0640|consen  296 VRTIGNAHGGSEVCSAVFTKNGKYIL--------SSGKDSTVKLWEIS------TGRMLKEYTG  345 (430)
T ss_pred             HHHHHhhcCCceeeeEEEccCCeEEe--------ecCCcceeeeeeec------CCceEEEEec
Confidence            3332 34544 799999999999999        88999999999999      7777776654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1e-30  Score=201.33  Aligned_cols=245  Identities=16%  Similarity=0.275  Sum_probs=207.3

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCCEEEEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      +.-|.++|.|+.|+. +..+||+|+.||.|++|.++++            .+++.+. .|+. .|+|+.|+.|+..++++
T Consensus       259 fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG------------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~  324 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETG------------QCLRRFDRAHTK-GVTCLSFSRDNSQILSA  324 (508)
T ss_pred             eeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecc------------hHHHHhhhhhcc-CeeEEEEccCcchhhcc
Confidence            445899999999999 8899999999999999999999            6777676 7877 58999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|.++++.-+..+                                        +.+..+++|+.-|+...|.++| ..+
T Consensus       325 sfD~tvRiHGlKSG----------------------------------------K~LKEfrGHsSyvn~a~ft~dG-~~i  363 (508)
T KOG0275|consen  325 SFDQTVRIHGLKSG----------------------------------------KCLKEFRGHSSYVNEATFTDDG-HHI  363 (508)
T ss_pred             cccceEEEeccccc----------------------------------------hhHHHhcCccccccceEEcCCC-CeE
Confidence            99999999988754                                        4457789999999999999999 889


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---c
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H  262 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~  262 (387)
                      ++++.||+|++|+.++.+........+...+|+++..-|.+...++++...++|.+.++.       ++.++++..   .
T Consensus       364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkRE  436 (508)
T KOG0275|consen  364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKRE  436 (508)
T ss_pred             EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCcc
Confidence            999999999999999988433333345667899999999888999999999999999988       788888753   2


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      .+...+.+.+|.|.++. +.++|+.++.|.+..+               .+-..+..|+..|..++-+|..+. ++    
T Consensus       437 gGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG---------------~LE~tl~VhEkdvIGl~HHPHqNl-lA----  495 (508)
T KOG0275|consen  437 GGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSG---------------KLERTLPVHEKDVIGLTHHPHQNL-LA----  495 (508)
T ss_pred             CCceEEEEecCCCcEEE-EEccCcEEEEEEeecC---------------ceeeeeecccccccccccCcccch-hh----
Confidence            34566778899999865 7788999999999886               345567889999999999997664 44    


Q ss_pred             CCCCCCCCceEEEEe
Q 016547          343 DCDSTGGGGTLQIWR  357 (387)
Q Consensus       343 d~~tg~~dg~i~iw~  357 (387)
                         +-+.||.+++|.
T Consensus       496 ---sYsEDgllKLWk  507 (508)
T KOG0275|consen  496 ---SYSEDGLLKLWK  507 (508)
T ss_pred             ---hhcccchhhhcC
Confidence               555669999995

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=200.62  Aligned_cols=250  Identities=15%  Similarity=0.221  Sum_probs=203.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.||...|+.+.|+| +...+++++.|-.|+||.....            ........|.. +|+.+..+|.|.||++
T Consensus       255 ~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~------------s~~~~~~~h~~-~V~~ls~h~tgeYlls  320 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLS------------SEPTSSRPHEE-PVTGLSLHPTGEYLLS  320 (506)
T ss_pred             hhccCcceEEEEEEecc-chhheeecCCcceEEeeccccc------------cCccccccccc-cceeeeeccCCcEEEE
Confidence            34568999999999999 8889999999999999999887            55667788887 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|++..+.|++++......                                      .-....-.+++.+|+||| .+
T Consensus       321 As~d~~w~Fsd~~~g~~lt~v--------------------------------------s~~~s~v~~ts~~fHpDg-Li  361 (506)
T KOG0289|consen  321 ASNDGTWAFSDISSGSQLTVV--------------------------------------SDETSDVEYTSAAFHPDG-LI  361 (506)
T ss_pred             ecCCceEEEEEccCCcEEEEE--------------------------------------eeccccceeEEeeEcCCc-eE
Confidence            999999999999876432110                                      001122458999999999 89


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-c
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-S  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~  263 (387)
                      |.+|..||.|++||+..+.  ....+.+|.++|..++|+. +|.+|+++++|+.|++||+|.      .+...++... .
T Consensus       362 fgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRK------l~n~kt~~l~~~  432 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRK------LKNFKTIQLDEK  432 (506)
T ss_pred             EeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehh------hcccceeecccc
Confidence            9999999999999999887  6788999999999999999 999999999999999999998      5555555432 2


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ..+.++.|.+.|.+| +.++.|=.|++++-.+             ..+..+..+..|.+..+.+.|....++++      
T Consensus       433 ~~v~s~~fD~SGt~L-~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~------  492 (506)
T KOG0289|consen  433 KEVNSLSFDQSGTYL-GIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLA------  492 (506)
T ss_pred             ccceeEEEcCCCCeE-EeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEe------
Confidence            369999999999975 4666565555554332             12355777788888999999999888777      


Q ss_pred             CCCCCCCceEEEEec
Q 016547          344 CDSTGGGGTLQIWRM  358 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~  358 (387)
                        +||.|..++++.+
T Consensus       493 --s~smd~~l~~~a~  505 (506)
T KOG0289|consen  493 --STSMDAILRLYAL  505 (506)
T ss_pred             --eccchhheEEeec
Confidence              7888899998865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.2e-29  Score=202.20  Aligned_cols=246  Identities=20%  Similarity=0.321  Sum_probs=203.7

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .+|.+.|.+++.++ ++++||+|+.|..|.||+.++.            .++..+.+|.+ .|.+++|-.....|++++.
T Consensus       199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~------------ehv~~~~ghr~-~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTL------------EHVKVFKGHRG-AVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             ccccceeEEEEEcC-CCcEEEecCCCceEEEecCccc------------chhhccccccc-ceeeeeeecCccceeeeec
Confidence            38999999999999 9999999999999999999999            77888999998 7999999988889999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      |++|++|+++..                                        ..+.++.+|++.|.++...... +.+.+
T Consensus       265 Drsvkvw~~~~~----------------------------------------s~vetlyGHqd~v~~IdaL~re-R~vtV  303 (479)
T KOG0299|consen  265 DRSVKVWSIDQL----------------------------------------SYVETLYGHQDGVLGIDALSRE-RCVTV  303 (479)
T ss_pred             CCceEEEehhHh----------------------------------------HHHHHHhCCccceeeechhccc-ceEEe
Confidence            999999999743                                        3346778999999999988776 66777


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cc----
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GH----  262 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~----  262 (387)
                      |+.|.++++|++....   ...+.++.+.+-|++|-  +...|++|+.+|.|.+|++-.      .+++.+.+ +|    
T Consensus       304 GgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  304 GGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIP  372 (479)
T ss_pred             ccccceeEEEeccccc---eeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecc------cCceeEeeccccccC
Confidence            7799999999995443   45667889999999998  478899999999999999988      66666543 22    


Q ss_pred             -------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          263 -------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       263 -------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                             ...|++++..|... |+|+|+.+|.|++|-+..+-...           .++..+. -.+.|++++|+++|.+
T Consensus       373 ~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i-----------~~l~~ls-~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAI-----------NLLYSLS-LVGFVNSLAFSNSGKR  439 (479)
T ss_pred             CccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcccc-----------ceeeecc-cccEEEEEEEccCCCE
Confidence                   23799999999877 78999999999999998853321           3344444 5678999999999999


Q ss_pred             EEEEecCCCCCCCCCceEEEEecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +++.++.+       ..+--|-..
T Consensus       440 ivagiGkE-------hRlGRW~~~  456 (479)
T KOG0299|consen  440 IVAGIGKE-------HRLGRWWCL  456 (479)
T ss_pred             EEEecccc-------cccceeeEe
Confidence            99876655       555555544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1e-28  Score=188.78  Aligned_cols=261  Identities=18%  Similarity=0.307  Sum_probs=200.4

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      .+.|..+.|+| .++.|+.++.||++++||+...+            ....+ .|.. ++.+++|.+ ...+++|+.||.
T Consensus        13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~------------l~~~~-~~~~-plL~c~F~d-~~~~~~G~~dg~   76 (323)
T KOG1036|consen   13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANS------------LKLKF-KHGA-PLLDCAFAD-ESTIVTGGLDGQ   76 (323)
T ss_pred             hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchh------------hhhhe-ecCC-ceeeeeccC-CceEEEeccCce
Confidence            57799999998 55556666799999999998872            22222 2443 799999986 567899999999


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      |+.+|+.++..                                         ..+..|...|.||.+++.. ..+++|+.
T Consensus        77 vr~~Dln~~~~-----------------------------------------~~igth~~~i~ci~~~~~~-~~vIsgsW  114 (323)
T KOG1036|consen   77 VRRYDLNTGNE-----------------------------------------DQIGTHDEGIRCIEYSYEV-GCVISGSW  114 (323)
T ss_pred             EEEEEecCCcc-----------------------------------------eeeccCCCceEEEEeeccC-CeEEEccc
Confidence            99999986533                                         4567899999999999876 68999999


Q ss_pred             CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEE
Q 016547          191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCV  269 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~  269 (387)
                      |++|++||.+...  ....+ .....|.++..   .++.|++|+.|..+.+||++++.     .+.+ .-....-.+.|+
T Consensus       115 D~~ik~wD~R~~~--~~~~~-d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~-----~~~q~reS~lkyqtR~v  183 (323)
T KOG1036|consen  115 DKTIKFWDPRNKV--VVGTF-DQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLD-----EPFQRRESSLKYQTRCV  183 (323)
T ss_pred             CccEEEEeccccc--ccccc-ccCceEEEEec---cCCEEEEeecCceEEEEEccccc-----chhhhccccceeEEEEE
Confidence            9999999999744  22233 23447888876   57899999999999999999853     2221 112345678999


Q ss_pred             EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---------CCeeEEEEccCCCeEEEEe
Q 016547          270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~s~  340 (387)
                      ++.|++.- +++++-||+|.+=.++.....+           ...+.+..|.         -+|++++|+|-.+.++   
T Consensus       184 ~~~pn~eG-y~~sSieGRVavE~~d~s~~~~-----------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa---  248 (323)
T KOG1036|consen  184 ALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ-----------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA---  248 (323)
T ss_pred             EEecCCCc-eEEEeecceEEEEccCCchHHh-----------hhceeEEeeecccCCceEEEEeceeEeccccceEE---
Confidence            99997765 5789999999887776541111           1233344443         2799999999988888   


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                           |||.||.|.+||+.      ..+.+.++.+....|.+++|+
T Consensus       249 -----TgGsDG~V~~Wd~~------~rKrl~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  249 -----TGGSDGIVNIWDLF------NRKRLKQLAKYETSISSLSFS  283 (323)
T ss_pred             -----ecCCCceEEEccCc------chhhhhhccCCCCceEEEEec
Confidence                 99999999999999      788889998888889999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=202.30  Aligned_cols=260  Identities=22%  Similarity=0.376  Sum_probs=200.7

Q ss_pred             CcEEEEEecC------CCCcEEEEecCCCcEEEEeccCCCCccc--ccCCC-------CCCCeEEEeccCCCceEEEEEC
Q 016547           32 GEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHA--VLGAT-------NSRPDLILTGHQDNAEFALAMC   96 (387)
Q Consensus        32 ~~v~~i~~~~------~~~~~l~t~~~dg~v~iwd~~~~~~~~~--~~~~~-------~~~~~~~~~~h~~~~v~~~~~~   96 (387)
                      ..-.|++|..      ..++++|.|+.|..|.|||++-......  .++..       ..+......+|++ +|..+.|+
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n  252 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWN  252 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhc
Confidence            3446777654      2468999999999999999875422211  11100       0112223457887 68899998


Q ss_pred             CC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547           97 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus        97 ~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      .. .+.|++||.|.+|++||+.+++                                        +...+..|...|.++
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~----------------------------------------p~~s~~~~~k~Vq~l  292 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGK----------------------------------------PKSSITHHGKKVQTL  292 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCC----------------------------------------cceehhhcCCceeEE
Confidence            75 4578999999999999998654                                        346667899999999


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +|+|..+..|++|+.|++|.+.|.+....  ....-...+.|-.++|.|.....++++..||+++-+|+|.+     +++
T Consensus       293 ~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~~  365 (463)
T KOG0270|consen  293 EWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GKP  365 (463)
T ss_pred             EecCCCceEEEeccccceEEeeeccCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CCc
Confidence            99999989999999999999999996331  12222345789999999988899999999999999999986     699


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +.++++|.++|.++++++.-+.++++++.|+.+++|++......             ......-.-+...++++.|+-.+
T Consensus       366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-------------~v~~~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-------------SVKEHSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-------------ccccccccccceeecccCCCcce
Confidence            99999999999999999999889999999999999999874321             11111111234678889999888


Q ss_pred             EEEEecCCCCCCCCCceEEEEecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +++       .||..+.++|||+.
T Consensus       433 ~la-------~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  433 TLA-------FGGEKAVLRVWDIF  449 (463)
T ss_pred             EEE-------ecCccceEEEeecc
Confidence            887       67777899999998

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.6e-30  Score=203.39  Aligned_cols=242  Identities=20%  Similarity=0.333  Sum_probs=194.5

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+.|..++|+++.|.+ ++..+++++.|+.+++|+++..            +...++.+|++ .|+++.|......+++|
T Consensus       214 tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~------------r~~~TLsGHtd-kVt~ak~~~~~~~vVsg  279 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSL------------RLRHTLSGHTD-KVTAAKFKLSHSRVVSG  279 (459)
T ss_pred             hhhccCCCcceeeecC-CCceEEeecCCCceeeeeccch------------hhhhhhccccc-ceeeehhhccccceeec
Confidence            4456788999999999 7777888899999999999998            78889999998 69999999877779999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|.+|+.||+.+..+....-+                                         ...+..|...+   ..+
T Consensus       280 s~DRtiK~WDl~k~~C~kt~l~-----------------------------------------~S~cnDI~~~~---~~~  315 (459)
T KOG0288|consen  280 SADRTIKLWDLQKAYCSKTVLP-----------------------------------------GSQCNDIVCSI---SDV  315 (459)
T ss_pred             cccchhhhhhhhhhheeccccc-----------------------------------------cccccceEecc---eee
Confidence            9999999999987544332221                                         23456666652   569


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc---
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH---  262 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---  262 (387)
                      ++|..|+.|++||.+...  .......+ +.|+++..++ ++..+++++.|.++.++|+++      ......+.+.   
T Consensus       316 ~SgH~DkkvRfwD~Rs~~--~~~sv~~g-g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt------~eI~~~~sA~g~k  385 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSAD--KTRSVPLG-GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRT------KEIRQTFSAEGFK  385 (459)
T ss_pred             eecccccceEEEeccCCc--eeeEeecC-cceeeEeecc-CCeEEeeecCCCceeeeeccc------ccEEEEeeccccc
Confidence            999999999999999988  45555544 4999999999 999999999999999999998      5666655432   


Q ss_pred             -cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          263 -SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       263 -~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                       ....+.+.|||++.| +|+|+.||.|+||++.+++..             ...........|++++|+|.|.+++    
T Consensus       386 ~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE-------------~~l~~s~s~~aI~s~~W~~sG~~Ll----  447 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLE-------------KVLSLSTSNAAITSLSWNPSGSGLL----  447 (459)
T ss_pred             cccccceeEECCCCce-eeeccCCCcEEEEEccCceEE-------------EEeccCCCCcceEEEEEcCCCchhh----
Confidence             234889999999997 579999999999999985322             1222222233799999999999998    


Q ss_pred             CCCCCCCCCceEEEEe
Q 016547          342 DDCDSTGGGGTLQIWR  357 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~  357 (387)
                          +++.++.+.+|.
T Consensus       448 ----sadk~~~v~lW~  459 (459)
T KOG0288|consen  448 ----SADKQKAVTLWT  459 (459)
T ss_pred             ----cccCCcceEecC
Confidence                778889999993

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=205.97  Aligned_cols=243  Identities=20%  Similarity=0.320  Sum_probs=184.5

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      .....+.+|+. .|.++++.|.|..|++|+.|.+|++||++......                                 
T Consensus       158 shEi~l~hgtk-~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~---------------------------------  203 (641)
T KOG0772|consen  158 SHEIQLKHGTK-IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM---------------------------------  203 (641)
T ss_pred             cceEeccCCce-EEEEeeecCCCceeeeccccceEEEEecccccccc---------------------------------
Confidence            34556777776 89999999999999999999999999998532211                                 


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC----------ceeEEeeccCCCeeEEEecCCC
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------PVIKVEKAHDADLHCVDWNPLD  226 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~  226 (387)
                      ..++  .........|++++|++.+ ..|++.+.....+++|-...+.          .-+...++|...+++.+|+|..
T Consensus       204 ~~fr--~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~  280 (641)
T KOG0772|consen  204 RSFR--QLQPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN  280 (641)
T ss_pred             hhhh--ccCcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc
Confidence            1111  1222344578999999999 5666667778899999654431          0122346899999999999988


Q ss_pred             CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547          227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  301 (387)
                      ...|++++.||++|+||+....     +....++     +..-+++..+|+++++. +|+|+.||.|.+|+.......  
T Consensus       281 k~~FlT~s~DgtlRiWdv~~~k-----~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~--  352 (641)
T KOG0772|consen  281 KEEFLTCSYDGTLRIWDVNNTK-----SQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVR--  352 (641)
T ss_pred             ccceEEecCCCcEEEEecCCch-----hheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccc--
Confidence            8999999999999999998742     3333333     22346889999999995 789999999999998664322  


Q ss_pred             cCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc-
Q 016547          302 QGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA-  378 (387)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-  378 (387)
                                .......+|..  .|+++.||++|++|+        +-|.|+++++||+++     ..+++.+..+-.. 
T Consensus       353 ----------p~~~vk~AH~~g~~Itsi~FS~dg~~Ll--------SRg~D~tLKvWDLrq-----~kkpL~~~tgL~t~  409 (641)
T KOG0772|consen  353 ----------PVMKVKDAHLPGQDITSISFSYDGNYLL--------SRGFDDTLKVWDLRQ-----FKKPLNVRTGLPTP  409 (641)
T ss_pred             ----------cceEeeeccCCCCceeEEEeccccchhh--------hccCCCceeeeeccc-----cccchhhhcCCCcc
Confidence                      12344467777  899999999999999        999999999999996     4777777665543 


Q ss_pred             -eEEEeeecC
Q 016547          379 -HVISCTSKP  387 (387)
Q Consensus       379 -~v~~~~f~P  387 (387)
                       +-+.|+|||
T Consensus       410 ~~~tdc~FSP  419 (641)
T KOG0772|consen  410 FPGTDCCFSP  419 (641)
T ss_pred             CCCCccccCC
Confidence             467788887

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.8e-28  Score=184.34  Aligned_cols=299  Identities=16%  Similarity=0.216  Sum_probs=207.9

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE--EeccCCCceEEEEECCCCCE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~~~~~~~  101 (387)
                      ...+.+|.+.|++++|++ +|+.|||++.|++|++|++++.+....       ++++.  -.+|.    +.+.|.||-+-
T Consensus        79 ~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~R~nve~dhp----T~V~FapDc~s  146 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEH-------RCIRQNVEYDHP----TRVVFAPDCKS  146 (420)
T ss_pred             hhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhh-------hHhhccccCCCc----eEEEECCCcce
Confidence            345668999999999999 999999999999999999988643211       12111  11233    58999999775


Q ss_pred             E-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          102 V-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       102 l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      + +++-...++++|.+.+...-....+                            .........-+.|+-.+..+-....
T Consensus       147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~----------------------------~v~~D~~~f~~kh~v~~i~iGiA~~  198 (420)
T KOG2096|consen  147 VVVSVKRGNKLCVYKLVKKTDGSGSHH----------------------------FVHIDNLEFERKHQVDIINIGIAGN  198 (420)
T ss_pred             EEEEEccCCEEEEEEeeecccCCCCcc----------------------------cccccccccchhcccceEEEeecCC
Confidence            4 4555667899998865432100000                            0000011122346666777777666


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC--CCCceEE
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINK  258 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~  258 (387)
                      + .++++++.|..|.+|+++ ++  .+..+......-+..+.+| +|+++++++-.--|++|..--.....  .-..+.+
T Consensus       199 ~-k~imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~  273 (420)
T KOG2096|consen  199 A-KYIMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS  273 (420)
T ss_pred             c-eEEEEecCCCcEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence            6 899999999999999998 55  4566666666677889999 99999999999999999875322111  0345678


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +++|...|..++|+++.+.+ ++.+.||+++|||+.-.-+. .+.+......+   ..+....+....++.+|+++.|++
T Consensus       274 LkGH~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~-~qDpk~Lk~g~---~pl~aag~~p~RL~lsP~g~~lA~  348 (420)
T KOG2096|consen  274 LKGHQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEA-GQDPKILKEGS---APLHAAGSEPVRLELSPSGDSLAV  348 (420)
T ss_pred             eccchhheeeeeeCCCccee-EEEecCCcEEEeeccceEec-CCCchHhhcCC---cchhhcCCCceEEEeCCCCcEEEe
Confidence            89999999999999999974 69999999999998753211 11111100000   111222334458999999998887


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEeeecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP  387 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~f~P  387 (387)
                      +.+         ..+++|..+      .++.+.+++ .|...|.+++|+|
T Consensus       349 s~g---------s~l~~~~se------~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  349 SFG---------SDLKVFASE------DGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             ecC---------CceEEEEcc------cCccchhHHHhhcCceeeEEecC
Confidence            655         579999988      676666665 5889999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.3e-29  Score=185.25  Aligned_cols=242  Identities=22%  Similarity=0.307  Sum_probs=188.6

Q ss_pred             EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      -..|.+ .|..+...--|++|+||+.|++|+|+.+++...                                     ..+
T Consensus         7 dt~H~D-~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-------------------------------------s~l   48 (299)
T KOG1332|consen    7 DTQHED-MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-------------------------------------SKL   48 (299)
T ss_pred             hhhhhh-hhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-------------------------------------cee
Confidence            456766 677777777899999999999999999985422                                     245


Q ss_pred             ceeecCCCCCeEEEEEc-cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC-CCeEEEeeCCCeE
Q 016547          162 RGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-DNLILTGSADNSV  239 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i  239 (387)
                      +..+.+|.++|..++|. |.-+.+|++++.||.|.||.-..++.........|...|++++|.|++ +-.|++++.||.|
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            57889999999999995 444489999999999999999888766677788899999999999943 5688999999999


Q ss_pred             EEEEeccCCCCCCCCceEEeccccceEEEEEEcCC---CC----------eeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547          240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KS----------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  306 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~----------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~  306 (387)
                      .+.+.+....   .........|.-.|++++|.|.   |.          +-|++|+.|..|+||+.....-        
T Consensus       129 svl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--------  197 (299)
T KOG1332|consen  129 SVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--------  197 (299)
T ss_pred             EEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--------
Confidence            9999987411   3344455679999999999986   41          1268999999999999987411        


Q ss_pred             CCCCceeeeeeccCCCCeeEEEEccCC---CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547          307 TNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  383 (387)
Q Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  383 (387)
                           .+-..+.+|.+.|..++|.|.-   ...++       +++.||+|.||..+.........++++   ....++++
T Consensus       198 -----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA-------S~SqDg~viIwt~~~e~e~wk~tll~~---f~~~~w~v  262 (299)
T KOG1332|consen  198 -----KLERTLEGHKDWVRDVAWAPSVGLPKSTIA-------SCSQDGTVIIWTKDEEYEPWKKTLLEE---FPDVVWRV  262 (299)
T ss_pred             -----hhhhhhhhcchhhhhhhhccccCCCceeeE-------EecCCCcEEEEEecCccCccccccccc---CCcceEEE
Confidence                 2233478999999999999975   33445       566669999999884333333444443   67889999


Q ss_pred             eecC
Q 016547          384 TSKP  387 (387)
Q Consensus       384 ~f~P  387 (387)
                      .||+
T Consensus       263 SWS~  266 (299)
T KOG1332|consen  263 SWSL  266 (299)
T ss_pred             EEec
Confidence            8875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=3.2e-28  Score=205.06  Aligned_cols=242  Identities=19%  Similarity=0.319  Sum_probs=203.1

Q ss_pred             ceeeeeeecCCCcEEE-EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           21 FVKKHKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~-i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      .++.....+|.+-|.+ ++|.+.++-.+++|+.|.+|.+|.....            .+...+.+|.. .|.++....++
T Consensus        47 ~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~------------~P~~~LkgH~s-nVC~ls~~~~~  113 (745)
T KOG0301|consen   47 YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA------------EPLYTLKGHKS-NVCSLSIGEDG  113 (745)
T ss_pred             cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC------------Cchhhhhcccc-ceeeeecCCcC
Confidence            4444556678888888 8888756667999999999999999998            89999999998 58888877777


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      . +++||.|.++++|....                                          ....+.+|+..|++++..|
T Consensus       114 ~-~iSgSWD~TakvW~~~~------------------------------------------l~~~l~gH~asVWAv~~l~  150 (745)
T KOG0301|consen  114 T-LISGSWDSTAKVWRIGE------------------------------------------LVYSLQGHTASVWAVASLP  150 (745)
T ss_pred             c-eEecccccceEEecchh------------------------------------------hhcccCCcchheeeeeecC
Confidence            7 99999999999998753                                          2245789999999999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      ++  .++||+.|.+|++|.-  ++  ..+.+.+|...|+.+++-+  ...|++++.||.|++|++.       +..+.+.
T Consensus       151 e~--~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-------ge~l~~~  215 (745)
T KOG0301|consen  151 EN--TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-------GEVLLEM  215 (745)
T ss_pred             CC--cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-------Cceeeee
Confidence            86  7999999999999975  33  5678899999999999987  5578899999999999995       8999999


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      .+|...|+++....++. +++++++|++++||+....                 .....-....|+++.+-++|+ ++  
T Consensus       216 ~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~-----------------~q~I~lPttsiWsa~~L~NgD-Iv--  274 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDEC-----------------VQVITLPTTSIWSAKVLLNGD-IV--  274 (745)
T ss_pred             eccceEEEEEEecCCCC-eEEEecCCceEEEeecCce-----------------EEEEecCccceEEEEEeeCCC-EE--
Confidence            99999999999766666 5789999999999998742                 233333344789999988877 45  


Q ss_pred             ecCCCCCCCCCceEEEEecCC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~  360 (387)
                            +|+.||.||||..+.
T Consensus       275 ------vg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  275 ------VGGSDGRVRVFTVDK  289 (745)
T ss_pred             ------EeccCceEEEEEecc
Confidence                  677889999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=3.5e-28  Score=204.82  Aligned_cols=259  Identities=20%  Similarity=0.354  Sum_probs=211.6

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEE-EEECC-CCCE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-LAMCP-TEPY  101 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~-~~~~~-~~~~  101 (387)
                      ...+.+|...|..++..+  +..+++++.||++++|+-...+          ......+.+|.+ .|.+ +++.+ ++-.
T Consensus         7 s~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~----------~l~~~~~~~~~g-~i~~~i~y~e~~~~~   73 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQ----------YLETHAFEGPKG-FIANSICYAESDKGR   73 (745)
T ss_pred             EEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcc----------cccceecccCcc-eeeccceeccccCcc
Confidence            356678999999998665  4479999999999999986662          234456777877 5555 78875 4556


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++|+.|+.|.+|....                                        ..++..+.+|+..|.++....++
T Consensus        74 l~~g~~D~~i~v~~~~~----------------------------------------~~P~~~LkgH~snVC~ls~~~~~  113 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQ----------------------------------------AEPLYTLKGHKSNVCSLSIGEDG  113 (745)
T ss_pred             eEeecccceEEEEecCC----------------------------------------CCchhhhhccccceeeeecCCcC
Confidence            99999999999998863                                        45678899999999999988777


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       . +++|+.|.++++|-....    ...+.+|...|.+++.-| .+ .+++|+.|.+|++|.-        ++.+++|.+
T Consensus       114 -~-~iSgSWD~TakvW~~~~l----~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--------~~~l~tf~g  177 (745)
T KOG0301|consen  114 -T-LISGSWDSTAKVWRIGEL----VYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--------GTLLKTFSG  177 (745)
T ss_pred             -c-eEecccccceEEecchhh----hcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--------Cchhhhhcc
Confidence             4 999999999999987543    455889999999999998 55 9999999999999965        468899999


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...|..+++-+++.  |++++.||.|++|++..                .++....+|..-|++++..++++.++    
T Consensus       178 HtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------------e~l~~~~ghtn~vYsis~~~~~~~Iv----  235 (745)
T KOG0301|consen  178 HTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------------EVLLEMHGHTNFVYSISMALSDGLIV----  235 (745)
T ss_pred             chhheeeeEEecCCC--eEeecCCceEEEEeccC----------------ceeeeeeccceEEEEEEecCCCCeEE----
Confidence            999999999999987  45999999999999965                46788899999999999777666665    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                          |+|.|++++||+..        ++.+.+.-....|+++.+
T Consensus       236 ----s~gEDrtlriW~~~--------e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  236 ----STGEDRTLRIWKKD--------ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             ----EecCCceEEEeecC--------ceEEEEecCccceEEEEE
Confidence                77778999999976        355555544457777665

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.5e-28  Score=181.17  Aligned_cols=231  Identities=21%  Similarity=0.315  Sum_probs=194.0

Q ss_pred             EEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           81 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        81 ~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      .++||.. +++.+.++.+|.+|.+|+.|.+..+|-..++                                        +
T Consensus         5 ~l~GHER-plTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------------------------------e   43 (327)
T KOG0643|consen    5 LLQGHER-PLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------------------------------E   43 (327)
T ss_pred             ccccCcc-ccceEEecCCCcEEEEecCCCCceEEEecCC----------------------------------------c
Confidence            4788987 7999999999999999999999999987543                                        4


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----  236 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----  236 (387)
                      .+.++.+|++.|+|+....+. ..+++|+.|.++++||+.+++  .+..+ ....+|..+.|++ ++++++...++    
T Consensus        44 rlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk--~la~~-k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~  118 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGK--QLATW-KTNSPVKRVDFSF-GGNLILASTDKQMGY  118 (327)
T ss_pred             eeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCc--EEEEe-ecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence            457889999999999999887 889999999999999999999  44444 3578999999999 88888877654    


Q ss_pred             -CeEEEEEeccCCCCC-CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          237 -NSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       237 -g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                       +.|.++|++...... ...++..+..+++.++.+-|.|-+++| ++|..||.|.+||++++.+              .+
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i-i~Ghe~G~is~~da~~g~~--------------~v  183 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI-IAGHEDGSISIYDARTGKE--------------LV  183 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE-EEecCCCcEEEEEcccCce--------------ee
Confidence             579999999543211 156788888899999999999999975 5999999999999998533              34


Q ss_pred             eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..-..|...|+.|.++++..+++        |++.|.+-++||+.      +-++++++. -..||++.+++|
T Consensus       184 ~s~~~h~~~Ind~q~s~d~T~Fi--------T~s~Dttakl~D~~------tl~v~Kty~-te~PvN~aaisP  241 (327)
T KOG0643|consen  184 DSDEEHSSKINDLQFSRDRTYFI--------TGSKDTTAKLVDVR------TLEVLKTYT-TERPVNTAAISP  241 (327)
T ss_pred             echhhhccccccccccCCcceEE--------ecccCccceeeecc------ceeeEEEee-ecccccceeccc
Confidence            45567899999999999999998        89999999999999      566666665 457888888877

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.96  E-value=6.9e-28  Score=182.67  Aligned_cols=297  Identities=22%  Similarity=0.363  Sum_probs=218.7

Q ss_pred             cceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCC-------CcEEEEeccCCCCcccccCCCCCCCeE
Q 016547            8 MLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS-------PDVLIWDVEAQPNRHAVLGATNSRPDL   80 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~   80 (387)
                      -+++.++++...  +....++.|.++|+.++-+|.+.++|+|+..+       -.+.||.+........   .....++.
T Consensus        42 Vhll~~d~e~s~--l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~  116 (370)
T KOG1007|consen   42 VHLLRLDSEGSE--LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---SSTLECVA  116 (370)
T ss_pred             eEEEEecCccch--hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---cchhhHhh
Confidence            345566655443  33445667899999999999999999998663       2467999876633211   11123344


Q ss_pred             EEe-ccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547           81 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus        81 ~~~-~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (387)
                      .+. .+-+ .|.|+.|.|++..+++-. |..|.+|++++.......-.                                
T Consensus       117 ~Ldteavg-~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~--------------------------------  162 (370)
T KOG1007|consen  117 SLDTEAVG-KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL--------------------------------  162 (370)
T ss_pred             cCCHHHhC-ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec--------------------------------
Confidence            444 3333 689999999999999876 88999999987543211000                                


Q ss_pred             CCceeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547          160 GPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  238 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  238 (387)
                        ...-..+....++-+|+|. ..+.+++ ..|+++..||+++.++ .......|...+..+.|+|+...+|++|++||.
T Consensus       163 --ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy  238 (370)
T KOG1007|consen  163 --SSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY  238 (370)
T ss_pred             --ccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence              0111225667788899993 2255555 4689999999998773 344556899999999999977789999999999


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec--cCC------------
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE--QGP------------  304 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~--~~~------------  304 (387)
                      |+|||.|..     ..++.++.+|...|.++.|+|....|+.+|+.|..|.+|..........  ...            
T Consensus       239 vriWD~R~t-----k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee  313 (370)
T KOG1007|consen  239 VRIWDTRKT-----KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE  313 (370)
T ss_pred             EEEEeccCC-----CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence            999999985     6789999999999999999998887888999999999998765432111  110            


Q ss_pred             CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .....+...+.++..|++.|++++|+.-.++++|+-|.|       |.+.|=.+.
T Consensus       314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD-------GRviIs~V~  361 (370)
T KOG1007|consen  314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD-------GRVIISSVP  361 (370)
T ss_pred             hcccccccccccccccccceEEEeeccCCCeeEEEeccC-------ceEEeecCC
Confidence            001134456678889999999999999999999977776       999988776

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.5e-28  Score=195.71  Aligned_cols=243  Identities=19%  Similarity=0.376  Sum_probs=197.2

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+--+++|.|++-+| .|.+|+.|+..|.+++|.+.++            ..+..+.+|-. .|+|+.|+-||.+|+||+
T Consensus        77 ~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG------------~LL~v~~aHYQ-~ITcL~fs~dgs~iiTgs  142 (476)
T KOG0646|consen   77 YIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSG------------ILLNVLSAHYQ-SITCLKFSDDGSHIITGS  142 (476)
T ss_pred             hcccccceeeeecCC-CceEEEeecccCcEEEEEeccc------------cHHHHHHhhcc-ceeEEEEeCCCcEEEecC
Confidence            344689999999888 9999999999999999999999            77778888987 699999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-CeeE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEF  185 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l  185 (387)
                      .||.|.+|.+.+-...                               .+....+++..+..|+-+|+++...+-+ ...+
T Consensus       143 kDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl  191 (476)
T KOG0646|consen  143 KDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL  191 (476)
T ss_pred             CCccEEEEEEEeeccc-------------------------------ccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence            9999999998642111                               0112456778999999999999987652 3579


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC--C--------CCCCc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS--N--------GVGSP  255 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~--------~~~~~  255 (387)
                      ++++.|.++++||+..+.  .+..+ ..+..+.+++.+| .+..+.+|+.+|.|.+.++.....  .        ..+..
T Consensus       192 ~TaS~D~t~k~wdlS~g~--LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~  267 (476)
T KOG0646|consen  192 YTASEDRTIKLWDLSLGV--LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ  267 (476)
T ss_pred             EEecCCceEEEEEeccce--eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence            999999999999999987  44443 4578899999999 999999999999999998876431  1        11445


Q ss_pred             eEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547          256 INKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  333 (387)
Q Consensus       256 ~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  333 (387)
                      +..+.+|..  .|+|++.+-||. +|++|+.||.++|||+...               +++.++....++|+.+.+.|-.
T Consensus       268 ~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~---------------Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  268 INVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK---------------QCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH---------------HHHHHHhhhccccceeEeeccc
Confidence            667788888  999999999999 6789999999999999874               3455554456788888886643


Q ss_pred             C
Q 016547          334 P  334 (387)
Q Consensus       334 ~  334 (387)
                      +
T Consensus       332 ~  332 (476)
T KOG0646|consen  332 R  332 (476)
T ss_pred             c
Confidence            3

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=192.94  Aligned_cols=267  Identities=13%  Similarity=0.240  Sum_probs=209.1

Q ss_pred             cEEEEec-CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547           45 KIVATHT-DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        45 ~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  123 (387)
                      .+++++. ....+.+|.+....            .......-++ +|.+++-+|+|.+|+.|...|.|.+|.+.++.   
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~------------~~~q~~v~Pg-~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---  114 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKD------------QVVQYIVLPG-PVHALASSNLGYFLLAGTISGNLYLWELSSGI---  114 (476)
T ss_pred             hheeeecccCccccccccCchh------------hhhhhccccc-ceeeeecCCCceEEEeecccCcEEEEEecccc---
Confidence            3555543 34578888887652            1111112223 68999999999999999899999999998654   


Q ss_pred             ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccC--
Q 016547          124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV--  201 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--  201 (387)
                                                           .+..+..|-..|+|+.|+.|+ .+|++|+.||.|.+|++..  
T Consensus       115 -------------------------------------LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen  115 -------------------------------------LLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             -------------------------------------HHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeec
Confidence                                                 346678899999999999998 8999999999999998743  


Q ss_pred             -----CCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547          202 -----GTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  275 (387)
Q Consensus       202 -----~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (387)
                           ........+..|.-+|+.+...+. ...+++++|.|.++++||+..      +..+.++. ....+.+++.+|-+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae  229 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAE  229 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccc
Confidence                 122356778899999999998772 357999999999999999998      88888776 56789999999999


Q ss_pred             CeeEEEecCCCeEEEEeCCCCCceeccC-CCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547          276 SSVFGSSAEDGLLNIWDYEKVGKKVEQG-PRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGT  352 (387)
Q Consensus       276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~  352 (387)
                      +.++ .|+.+|.|.+.++.......... ..........+..+.||.+  .|++++.+-||..|+        +|+.||.
T Consensus       230 ~~~y-iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl--------SGd~dg~  300 (476)
T KOG0646|consen  230 RVVY-IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL--------SGDEDGK  300 (476)
T ss_pred             cEEE-ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE--------eeCCCCC
Confidence            8654 89999999999988754221100 0111111234566788988  999999999999888        9999999


Q ss_pred             EEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          353 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       353 i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |+|||+.      +.++++++....++|+-+.+.|
T Consensus       301 VcvWdi~------S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  301 VCVWDIY------SKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             EEEEecc------hHHHHHHHhhhccccceeEeec
Confidence            9999999      8999999998889999888844

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3e-28  Score=185.20  Aligned_cols=235  Identities=24%  Similarity=0.416  Sum_probs=182.3

Q ss_pred             EeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      ...|.+ .|+++...+ .|+|+++|+.||.|.+||+++..........                         -+....-
T Consensus        39 ~r~HgG-svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-------------------------~k~~c~v   92 (397)
T KOG4283|consen   39 VRPHGG-SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-------------------------AKHKCIV   92 (397)
T ss_pred             eccCCC-ccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-------------------------eheeeec
Confidence            344655 689999987 6899999999999999999864321110000                         0000000


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeEEEeeCCCe
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNS  238 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~  238 (387)
                      ....-.+|+-.|.++.|.|.+..+|.+++.|.++++||..+.+  ....+ ..++.|++-+++|-  ..-++|+|..|-.
T Consensus        93 ~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~  169 (397)
T KOG4283|consen   93 AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ--EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ  169 (397)
T ss_pred             cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce--eeEEe-ecCceeehhhcChhhhcceEEEEecCCCc
Confidence            1122357888999999999877899999999999999998877  34444 35678888888883  2457888889999


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC-CceeccCCCCCCCCceeeeee
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      |++.|+.+      +..-+.+.+|...|.++.|+|...++|++|+.||.|++||++.. +.......+....++. +..-
T Consensus       170 VrLCDi~S------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~-~~~n  242 (397)
T KOG4283|consen  170 VRLCDIAS------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI-LKTN  242 (397)
T ss_pred             EEEEeccC------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc-cccc
Confidence            99999999      99999999999999999999999999999999999999999986 3334444444333333 3356


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..|.+.|++++|..++.+++        ++|.|..+++|+...
T Consensus       243 ~ah~gkvngla~tSd~~~l~--------~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  243 TAHYGKVNGLAWTSDARYLA--------SCGTDDRIRVWNMES  277 (397)
T ss_pred             ccccceeeeeeecccchhhh--------hccCccceEEeeccc
Confidence            78999999999999999998        899999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.8e-28  Score=186.70  Aligned_cols=266  Identities=20%  Similarity=0.324  Sum_probs=214.9

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEecc----CCCCc--c----------------------cccCCC
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE----AQPNR--H----------------------AVLGAT   74 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~----~~~~~--~----------------------~~~~~~   74 (387)
                      ...+..||.|.|++|+|++ .+.+++|++.|++-.||...    .....  .                      ...++.
T Consensus       182 CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t  260 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT  260 (481)
T ss_pred             ceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence            3456779999999999999 88999999999999999721    11100  0                      001112


Q ss_pred             CCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCC
Q 016547           75 NSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA  154 (387)
Q Consensus        75 ~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (387)
                      ...++..+.+|.. +|.+..|...|+.+++++.|.+..+||++++                                   
T Consensus       261 iRvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-----------------------------------  304 (481)
T KOG0300|consen  261 IRVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWDVETG-----------------------------------  304 (481)
T ss_pred             eeeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeeeeccC-----------------------------------
Confidence            2246788999998 7899999999999999999999999999864                                   


Q ss_pred             CCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547          155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  234 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (387)
                           +++..+.+|....+.++-+|.. +++++.+.|.+.++||++..- +.+..+++|...|+++.|..  +..+++|+
T Consensus       305 -----e~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI-~sV~VFQGHtdtVTS~vF~~--dd~vVSgS  375 (481)
T KOG0300|consen  305 -----EVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI-QSVAVFQGHTDTVTSVVFNT--DDRVVSGS  375 (481)
T ss_pred             -----ceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc-ceeeeecccccceeEEEEec--CCceeecC
Confidence                 3457788999999999999998 899999999999999999543 46788999999999999985  67899999


Q ss_pred             CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          235 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       235 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                      +|.+|++||++++     ..++.++. .+++++.++.+..++ ++|.--++..|++||+.......  .         ..
T Consensus       376 DDrTvKvWdLrNM-----RsplATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaR--l---------Pr  437 (481)
T KOG0300|consen  376 DDRTVKVWDLRNM-----RSPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLAR--L---------PR  437 (481)
T ss_pred             CCceEEEeeeccc-----cCcceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCcccc--C---------Cc
Confidence            9999999999987     67888887 467899999998777 67788888999999998642211  1         12


Q ss_pred             eeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCCCCceEEEEecCC
Q 016547          315 FQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ....+|...|++++|..+.+  .|+        ++|-|..+.-|+++.
T Consensus       438 tsRqgHrRMV~c~AW~eehp~cnLf--------tcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  438 TSRQGHRRMVTCCAWLEEHPACNLF--------TCGFDRMVAGWKINT  477 (481)
T ss_pred             ccccccceeeeeeeccccCcccccc--------cccccceeeeeEecc
Confidence            23468999999999986543  355        889999999999983

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-29  Score=209.20  Aligned_cols=230  Identities=22%  Similarity=0.429  Sum_probs=189.1

Q ss_pred             EEEEC-CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           92 ALAMC-PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        92 ~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      .+..+ |.+++|++|++||.|++|++......                                  .....+..++.|.+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~----------------------------------~s~~~~asme~HsD   74 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE----------------------------------PSTPYIASMEHHSD   74 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCC----------------------------------cccchhhhhhhhHh
Confidence            34444 46778999999999999998743211                                  01112467788999


Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEe-cCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW-NPLDDNLILTGSADNSVRMFDRRNLTS  249 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~  249 (387)
                      .|+.+....++ +.|++++.|-+|++|+......-++..+..|...|.|+++ .+ +..++|+|+.|+.|.+||+.+...
T Consensus        75 WVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   75 WVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             HHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcch
Confidence            99999999998 7899999999999999987753467788899999999999 55 899999999999999999997421


Q ss_pred             CC----CCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547          250 NG----VGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  324 (387)
Q Consensus       250 ~~----~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  324 (387)
                      ..    .......+. ++..+|++++.++.|. ++++|+.++.+++||.+...               .+..+.||...|
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~---------------kimkLrGHTdNV  216 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCK---------------KIMKLRGHTDNV  216 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccccc---------------ceeeeeccccce
Confidence            00    011222333 7888999999999996 78899999999999999863               356678999999


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..+..++||..++        +++.||+|++||+.      ...++.++..|...|+++..+|
T Consensus       217 r~ll~~dDGt~~l--------s~sSDgtIrlWdLg------qQrCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  217 RVLLVNDDGTRLL--------SASSDGTIRLWDLG------QQRCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             EEEEEcCCCCeEe--------ecCCCceEEeeecc------ccceeeeEEeccCceEEEeeCC
Confidence            9999999999999        89999999999999      7999999999999999998775

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=1.2e-28  Score=200.29  Aligned_cols=272  Identities=20%  Similarity=0.362  Sum_probs=216.6

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-CCCceEEEEECCCCCE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY  101 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~~~~~~~~~~  101 (387)
                      +.+..+.|..-|.++..+. ..+.+.||+. |.|+|||+......         .++..+..- .++.|.++.+.|||+.
T Consensus       411 rq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdcl~rdnyiRSckL~pdgrt  479 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDCLNRDNYIRSCKLLPDGRT  479 (705)
T ss_pred             HhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCC---------CccccccccCcccceeeeEecCCCce
Confidence            4556678999899999887 7788999876 67999999876322         233333332 3446899999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++|+.-.++.|||+......                                      ....+....-...+++.+||.
T Consensus       480 LivGGeastlsiWDLAapTpr--------------------------------------ikaeltssapaCyALa~spDa  521 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPR--------------------------------------IKAELTSSAPACYALAISPDA  521 (705)
T ss_pred             EEeccccceeeeeeccCCCcc--------------------------------------hhhhcCCcchhhhhhhcCCcc
Confidence            999999999999999754221                                      112222333456789999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       ++.++++.||.|.|||+....  .++.+++|...+.||.+++ +|..|.+|+-|++||.||++.      +..+.... 
T Consensus       522 -kvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlre------grqlqqhd-  590 (705)
T KOG0639|consen  522 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLRE------GRQLQQHD-  590 (705)
T ss_pred             -ceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhh------hhhhhhhh-
Confidence             889999999999999999877  7899999999999999999 999999999999999999998      66655544 


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ..+.|.++..+|++.+ ++.|-+++.+.|-......                ...+.-|++-|.++.|.+.|++++    
T Consensus       591 F~SQIfSLg~cP~~dW-lavGMens~vevlh~skp~----------------kyqlhlheScVLSlKFa~cGkwfv----  649 (705)
T KOG0639|consen  591 FSSQIFSLGYCPTGDW-LAVGMENSNVEVLHTSKPE----------------KYQLHLHESCVLSLKFAYCGKWFV----  649 (705)
T ss_pred             hhhhheecccCCCccc-eeeecccCcEEEEecCCcc----------------ceeecccccEEEEEEecccCceee----
Confidence            4678999999999997 5789999999988887642                345577999999999999999998    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                          +.|.|+.+..|...      -|..+-+.. ..++|.+|+.|
T Consensus       650 ----StGkDnlLnawrtP------yGasiFqsk-E~SsVlsCDIS  683 (705)
T KOG0639|consen  650 ----STGKDNLLNAWRTP------YGASIFQSK-ESSSVLSCDIS  683 (705)
T ss_pred             ----ecCchhhhhhccCc------cccceeecc-ccCcceeeeec
Confidence                88888999999988      455444443 45677777654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.1e-27  Score=201.83  Aligned_cols=337  Identities=19%  Similarity=0.268  Sum_probs=235.2

Q ss_pred             cCcceeeeeeecCCCcEEEEEecCCCC--cEEEEecCCCcEEEEeccCCCCcccc---------cCCCCCCCe-------
Q 016547           18 RSPFVKKHKTIIHPGEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHAV---------LGATNSRPD-------   79 (387)
Q Consensus        18 ~~~~~~~~~~~~h~~~v~~i~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~---------~~~~~~~~~-------   79 (387)
                      ...+.....+.||.+-|++++|....+  -+||+++.|..|+||.+.-.......         .........       
T Consensus       178 ~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i  257 (764)
T KOG1063|consen  178 ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI  257 (764)
T ss_pred             CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence            335667778889999999999987443  58899999999999987644311110         000000011       


Q ss_pred             ---EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcC--ccccCCCccc-CCCCCCceeccC------CCCC
Q 016547           80 ---LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT--SSATDPATAK-SAGSSGSIIKQS------PKPG  147 (387)
Q Consensus        80 ---~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~------~~~~  147 (387)
                         ..+.||++ .|+++.|+|.+..|++++.|.++.+|...+..-  ....+..... ...+.......+      ....
T Consensus       258 s~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~  336 (764)
T KOG1063|consen  258 SFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR  336 (764)
T ss_pred             ehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence               23458998 899999999999999999999999998765411  1111111110 010111111111      1112


Q ss_pred             CCCCCCCC---CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC----------------------
Q 016547          148 DGNDKAAD---GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG----------------------  202 (387)
Q Consensus       148 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------  202 (387)
                      .+...+|.   .....+.....+|.+.|+++.|.|.| .++++.+.|.+-+++-.-..                      
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            33334443   23334556678999999999999999 78888888888777543200                      


Q ss_pred             --------------------------------------------------------------------------------
Q 016547          203 --------------------------------------------------------------------------------  202 (387)
Q Consensus       203 --------------------------------------------------------------------------------  202 (387)
                                                                                                      
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence                                                                                            


Q ss_pred             ------------------CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-----eEEEEEeccCCCCCCCCceEEe
Q 016547          203 ------------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       203 ------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                                        -.|....+.+|...|++++.+| +++++|+++...     .|++|+..+      ...+..+
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~------W~~~~~L  568 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN------WLQVQEL  568 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc------hhhhhee
Confidence                              0011223467888999999999 999999998753     599999998      8888899


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      .+|+-.|+.++||||+++|| +.+.|+++.+|.........           ..+.....|..-|.+..|+|++.+++  
T Consensus       569 ~~HsLTVT~l~FSpdg~~LL-svsRDRt~sl~~~~~~~~~e-----------~~fa~~k~HtRIIWdcsW~pde~~Fa--  634 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDGRYLL-SVSRDRTVSLYEVQEDIKDE-----------FRFACLKAHTRIIWDCSWSPDEKYFA--  634 (764)
T ss_pred             cccceEEEEEEECCCCcEEE-EeecCceEEeeeeecccchh-----------hhhccccccceEEEEcccCcccceeE--
Confidence            99999999999999999865 88999999999986532221           11334678999999999999999866  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhh--hhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--LEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~v~~~~f~P  387 (387)
                            |++.|.+|++|...+.    ..+.+..  ...+..+|+++++.|
T Consensus       635 ------TaSRDK~VkVW~~~~~----~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  635 ------TASRDKKVKVWEEPDL----RDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             ------EecCCceEEEEeccCc----hhhhhhhhchhccCCceeeEEeec
Confidence                  7777899999999953    1234433  446889999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-27  Score=182.52  Aligned_cols=277  Identities=13%  Similarity=0.167  Sum_probs=203.6

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      +.|.. -.|+.|++ .|.+||+|+.||.|.|||+.+.            .+-..+.+|.. +|.+++||++|++|+|+|.
T Consensus        21 ld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~-pi~sl~WS~dgr~LltsS~   85 (405)
T KOG1273|consen   21 LDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVR-PITSLCWSRDGRKLLTSSR   85 (405)
T ss_pred             ccCCc-cceEEecc-CcceeeeeccCCcEEEEEcccc------------chhhhhhcccc-ceeEEEecCCCCEeeeecC
Confidence            34444 78999999 9999999999999999999998            67778999997 8999999999999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      |..|.+||+..+...                                        ..+ ....+|+.+.|+|...+.+++
T Consensus        86 D~si~lwDl~~gs~l----------------------------------------~ri-rf~spv~~~q~hp~k~n~~va  124 (405)
T KOG1273|consen   86 DWSIKLWDLLKGSPL----------------------------------------KRI-RFDSPVWGAQWHPRKRNKCVA  124 (405)
T ss_pred             CceeEEEeccCCCce----------------------------------------eEE-EccCccceeeeccccCCeEEE
Confidence            999999999865432                                        222 236789999999988677776


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-c
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-A  264 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~  264 (387)
                      .-.+..-.+-++.......+-.-..  -.....+..|++ .|+++++|...|.+.++|..+      .+++..++... .
T Consensus       125 ~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t------~e~vas~rits~~  197 (405)
T KOG1273|consen  125 TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET------LECVASFRITSVQ  197 (405)
T ss_pred             EEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch------heeeeeeeechhe
Confidence            6666666666665543111111100  011122335788 899999999999999999999      88888887666 7


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEccCCCeEEEEecC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      .|..+.++..|+++ +.-+.|+.||.|+++.....-.....      .....+..  ....=..++|+.+|.|++++.+ 
T Consensus       198 ~IK~I~~s~~g~~l-iiNtsDRvIR~ye~~di~~~~r~~e~------e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-  269 (405)
T KOG1273|consen  198 AIKQIIVSRKGRFL-IINTSDRVIRTYEISDIDDEGRDGEV------EPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-  269 (405)
T ss_pred             eeeEEEEeccCcEE-EEecCCceEEEEehhhhcccCccCCc------ChhHHHHHHHhhhhhhheeecCCccEEEeccc-
Confidence            89999999999975 57888999999999853222100000      00001100  1123357789999999987543 


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhhhhhccC-ceEEEeeecC
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP  387 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~f~P  387 (387)
                            .-..++||.-.      .|.+++.+.|.+ .....|+|+|
T Consensus       270 ------~aHaLYIWE~~------~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  270 ------RAHALYIWEKS------IGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             ------cceeEEEEecC------CcceeeeecCCchhheeeccccc
Confidence                  34899999999      899999988877 4566677765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3.6e-27  Score=179.37  Aligned_cols=302  Identities=17%  Similarity=0.233  Sum_probs=215.8

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCc--ccccCCC-CCCCeEEEeccCCCceEEEEECC-CCCEEEE
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--HAVLGAT-NSRPDLILTGHQDNAEFALAMCP-TEPYVLS  104 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s  104 (387)
                      .|.+.|+++..-+..++++++|+.||.|.+||++.....  ..+..+. .......-.+|.- .|..+.|-| |...+.+
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky-~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKY-AISSAIWYPIDTGMFTS  119 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcccee-eeeeeEEeeecCceeec
Confidence            599999999999999999999999999999999876421  1111100 0001112244555 588999998 6668889


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      ++.|.++++||.++.+....+......    .......-...+.+..+..+++-+...+.....+.+|.+.|.++.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            999999999999988766554433222    1111111223344555667777888889999999999999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCC-------------CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          181 SAQEFCSVGDDSCLILWDARVGT-------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      .+..|++|+.||.|++||++...             .|..+.-..|.+.++.++|.. ++.++++++.|..+++|+..+.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccC
Confidence            98899999999999999998641             223333557889999999999 9999999999999999999874


Q ss_pred             CCCC--CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          248 TSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       248 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      .+..  .++.+..-+.| -.+. +. +-+.. +|+---.++.+.++++-.+               ..+..+..|-..|.
T Consensus       279 ~ntl~~~g~~~~n~~~~-~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k~i~  339 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTTS-FAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLKRIN  339 (397)
T ss_pred             ccccccccccccccccc-ceEE-Ee-ecccc-eEEEEecCCeEEEEEccCc---------------eEEEeeecccceee
Confidence            3211  01111111111 1111 22 22222 3434445688888888775               34677788888899


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.++.|+-+...        +|..|+.|..|-..
T Consensus       340 c~~~~~~fq~~~--------tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  340 CAAYRPDFEQCF--------TGDMNGNIYMWSPA  365 (397)
T ss_pred             EEeecCchhhhh--------ccccCCcccccccc
Confidence            999999988888        99999999999873

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=2.5e-28  Score=181.30  Aligned_cols=205  Identities=20%  Similarity=0.413  Sum_probs=174.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      +..+.|..-|.+++|+. +.++|+||+.+..++|||++..+           .+...+.+|++ .|..+.|....+.+++
T Consensus        94 lhsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~-----------App~E~~ghtg-~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   94 LHSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPK-----------APPKEISGHTG-GIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCCC-----------CCchhhcCCCC-cceeEEEeccCceEEe
Confidence            45578999999999998 88999999999999999998874           56677899998 5899999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|++||+||.+++.....                                        +. ...+|+++.++++| . 
T Consensus       161 Sadd~tVRLWD~rTgt~v~s----------------------------------------L~-~~s~VtSlEvs~dG-~-  197 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQS----------------------------------------LE-FNSPVTSLEVSQDG-R-  197 (334)
T ss_pred             eccCCceEEEEeccCcEEEE----------------------------------------Ee-cCCCCcceeeccCC-C-
Confidence            99999999999997654322                                        21 24679999999998 4 


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-cccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHS  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~  263 (387)
                      +++....+.|.+||..+..  .++.. .-+..|.+...+| +...+++|+.|..++.||..+      +..+..+ ++|.
T Consensus       198 ilTia~gssV~Fwdaksf~--~lKs~-k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T------geEi~~~nkgh~  267 (334)
T KOG0278|consen  198 ILTIAYGSSVKFWDAKSFG--LLKSY-KMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT------GEEIGSYNKGHF  267 (334)
T ss_pred             EEEEecCceeEEecccccc--ceeec-cCccccccccccC-CCceEEecCcceEEEEEeccC------CceeeecccCCC
Confidence            5566677899999998877  34443 3456789999999 789999999999999999999      8888876 8999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ++|.|+.|+|+|. +.|+|++||+|++|.+...
T Consensus       268 gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  268 GPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             CceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence            9999999999999 6899999999999998764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-28  Score=208.81  Aligned_cols=234  Identities=20%  Similarity=0.382  Sum_probs=205.8

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ......|...|.|+..-. ..+.+++|+.|-.+-+|.+...            ..+..+.+|.. +|.++.|+++...|+
T Consensus        21 ~~~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp------------~~i~S~~~hes-pIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKP------------NAITSLTGHES-PIESLTFDTSERLLA   86 (825)
T ss_pred             chhhhhhhhhhceeeeec-cceeeccCCCceeeccccccCC------------chhheeeccCC-cceeeecCcchhhhc
Confidence            345557999999998744 8899999999999999998877            66777999998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.+|+|++||++...                                        .+..+.+|...+..+.|+|-+ .
T Consensus        87 agsasgtiK~wDleeAk----------------------------------------~vrtLtgh~~~~~sv~f~P~~-~  125 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAK----------------------------------------IVRTLTGHLLNITSVDFHPYG-E  125 (825)
T ss_pred             ccccCCceeeeehhhhh----------------------------------------hhhhhhccccCcceeeeccce-E
Confidence            99999999999998543                                        236788999999999999999 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ++++|+.|+.+++||.+...  +...+.+|...+..+.|+| +|++++.|+.|..+++||+..      ++...+|+.|+
T Consensus       126 ~~a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e  196 (825)
T KOG0267|consen  126 FFASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHE  196 (825)
T ss_pred             EeccccccccceehhhhccC--ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccc------ccccccccccc
Confidence            88999999999999999766  6778888999999999999 999999999999999999998      99999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      +.+..+.|+|..- |+++|+.|+++++||+++.               ..+.........|.+.+|+|++..++
T Consensus       197 ~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletf---------------e~I~s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  197 GKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETF---------------EVISSGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             ccccccccCchhh-hhccCCCCceeeeecccee---------------EEeeccCCccCCceeeeecCCceeee
Confidence            9999999999775 7899999999999999974               34444455567899999999987655

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=7e-27  Score=193.96  Aligned_cols=311  Identities=15%  Similarity=0.162  Sum_probs=223.1

Q ss_pred             cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      |........||++.|.||...| .|.+||+|+.||+|+||.+.++            +++..+.--.  .|.|++|+|.+
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~Tg------------Rcvr~~~~d~--~I~~vaw~P~~  453 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATG------------RCVRTVQFDS--EIRSVAWNPLS  453 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecc------------eEEEEEeecc--eeEEEEecCCC
Confidence            3345567779999999999999 9999999999999999999999            6777666544  69999999987


Q ss_pred             CE--EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC----CCceeecCCCCCeE
Q 016547          100 PY--VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV----GPRGIYNGHEDTVE  173 (387)
Q Consensus       100 ~~--l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~  173 (387)
                      ..  ||++- ...+.+-+..-+................       .....+..+..|.....    .-+...-.|...|.
T Consensus       454 ~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~-------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~  525 (733)
T KOG0650|consen  454 DLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAP-------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR  525 (733)
T ss_pred             CceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCC-------CccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence            63  44443 4446665544331111111110000000       01111223333333211    11345557889999


Q ss_pred             EEEEccCCCeeEEEecC---CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          174 DVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      .+.|+..| .+|++...   ...|.|+++....  ....+....+.|.++.|+| ...+|++++ ...|++||+..    
T Consensus       526 ~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~--sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~k----  596 (733)
T KOG0650|consen  526 QVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRK--SQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSK----  596 (733)
T ss_pred             eeeeecCC-ceEEEeccCCCcceEEEEeccccc--ccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhH----
Confidence            99999999 67777654   3568999998776  3345555678899999999 677777765 56799999997    


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                        ...+..+......|..++.+|.|.+|+ .|+.|+.+..||+....++              ..++.-|...+++++|+
T Consensus       597 --qelvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskP--------------yk~lr~H~~avr~Va~H  659 (733)
T KOG0650|consen  597 --QELVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKP--------------YKTLRLHEKAVRSVAFH  659 (733)
T ss_pred             --HHHHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcch--------------hHHhhhhhhhhhhhhhc
Confidence              777777777778899999999999865 8899999999999986544              45567899999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEec---CCCcccccchhhhhhhccCce----EEEeeecC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRM---SDLIYRPQDEVLAELEKFKAH----VISCTSKP  387 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~---~~~~~~~~~~~~~~~~~~~~~----v~~~~f~P  387 (387)
                      +.-+.++        +|+.||++.|+.-   +++..++.--+++.+.+|...    |..+.|||
T Consensus       660 ~ryPLfa--------s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  660 KRYPLFA--------SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             cccceee--------eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence            9877554        5666699999973   344445556678899999876    99999998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=198.54  Aligned_cols=310  Identities=14%  Similarity=0.240  Sum_probs=225.4

Q ss_pred             eeeeeecCC-CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCC
Q 016547           23 KKHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEP  100 (387)
Q Consensus        23 ~~~~~~~h~-~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~  100 (387)
                      +....+.|. +.|+.++|-.++..++|+|+..|.+.+||++..            +....+. .|.+ .|....|.|...
T Consensus       235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k------------kl~~v~~nah~~-sv~~~~fl~~ep  301 (910)
T KOG1539|consen  235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK------------KLINVTRNAHYG-SVTGATFLPGEP  301 (910)
T ss_pred             cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC------------eeeeeeeccccC-CcccceecCCCc
Confidence            345566785 999999999877778899999999999999988            4444444 6765 578999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCcCcc---cc-----CCCc-cc----------CCCCCCceeccC------------------
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSS---AT-----DPAT-AK----------SAGSSGSIIKQS------------------  143 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~---~~-----~~~~-~~----------~~~~~~~~~~~~------------------  143 (387)
                      .+++++.|+++++|-.+++....   ..     .|.. ..          ....+.......                  
T Consensus       302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~  381 (910)
T KOG1539|consen  302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR  381 (910)
T ss_pred             eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence            99999999999999776331100   00     0000 00          000000000000                  


Q ss_pred             ---------------------CC--------------CCCCCCCCCCCCCCCC-ceee-----cCCCCCeEEEEEccCCC
Q 016547          144 ---------------------PK--------------PGDGNDKAADGPSVGP-RGIY-----NGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       144 ---------------------~~--------------~~~~~~~~~~~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~  182 (387)
                                           ..              .+......|+...... ...+     +.....+++++.++-| 
T Consensus       382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-  460 (910)
T KOG1539|consen  382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-  460 (910)
T ss_pred             cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-
Confidence                                 00              0011111121111111 0111     1123568889999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      ++.+.|...|.|-+|++.++-  ....+   +.|..+|+.++.+. .++.+++++.+|.+.+||...      ...+..+
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~------k~l~~~l  531 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK------KVLKKSL  531 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC------cceeeee
Confidence            899999999999999999987  33344   58999999999998 899999999999999999998      6666666


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      . -...+.++..+.... ++|.+.+|-.|+++|+.+.               ..+..+.+|.+.|++++|||||++++  
T Consensus       532 ~-l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------------kvvR~f~gh~nritd~~FS~DgrWli--  592 (910)
T KOG1539|consen  532 R-LGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------------KVVREFWGHGNRITDMTFSPDGRWLI--  592 (910)
T ss_pred             c-cCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------------hhhHHhhccccceeeeEeCCCCcEEE--
Confidence            6 456788888887776 6788889999999999875               45777899999999999999999998  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                            +.+.|++|++||+.      ++.++..+. ...+..++.|||
T Consensus       593 ------sasmD~tIr~wDlp------t~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  593 ------SASMDSTIRTWDLP------TGTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             ------EeecCCcEEEEecc------CcceeeeEe-cCCcceeeEECC
Confidence                  77778999999999      788777665 578889999988

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.96  E-value=2.4e-26  Score=177.03  Aligned_cols=280  Identities=15%  Similarity=0.361  Sum_probs=208.0

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC-------CCCCEEEEec
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-------PTEPYVLSGG  106 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~-------~~~~~l~s~~  106 (387)
                      ...+.|+| +|..|++-+.|..+.+|++....-.....+.........++-..+..|...+|-       |+..++++.+
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            34678999 888899999999999999875432222222222233444555555568888886       5678999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC---CeEEEEEccCCCe
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED---TVEDVTFCPSSAQ  183 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~  183 (387)
                      .|.-|.+||.-++.....+..                                      ..|.+   ...+++|+||| .
T Consensus       131 r~~PIh~wdaftG~lraSy~~--------------------------------------ydh~de~taAhsL~Fs~DG-e  171 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRA--------------------------------------YDHQDEYTAAHSLQFSPDG-E  171 (406)
T ss_pred             ccCceeeeeccccccccchhh--------------------------------------hhhHHhhhhheeEEecCCC-C
Confidence            999999999987654433221                                      12332   24689999999 5


Q ss_pred             eEEEecCCCeEEEEEc-cCCCCceeEE-----eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          184 EFCSVGDDSCLILWDA-RVGTSPVIKV-----EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~-~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      .|++ +....|+++|+ +.+..-....     ..+..+-|.+++|+|.+...+++|+.-..+-||.-..      ..++.
T Consensus       172 qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~  244 (406)
T KOG2919|consen  172 QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQ  244 (406)
T ss_pred             eEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCcee
Confidence            5554 46789999999 5444211211     2234677899999998888999999999999998877      78999


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC---CeeEEEEccCCC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDP  334 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~  334 (387)
                      .+.+|.+.|+.+.|.++|..++..+-.|-.|..||++....+              +..+..|.+   .-.-+...|+++
T Consensus       245 llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p--------------v~~L~rhv~~TNQRI~FDld~~~~  310 (406)
T KOG2919|consen  245 LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP--------------VYALERHVGDTNQRILFDLDPKGE  310 (406)
T ss_pred             eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch--------------hhhhhhhccCccceEEEecCCCCc
Confidence            999999999999999999988754556889999999986554              334444444   223455678899


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +|+        +|+.||.|++||+..     -+.....+..|+..|+.|+++|
T Consensus       311 ~La--------sG~tdG~V~vwdlk~-----~gn~~sv~~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  311 ILA--------SGDTDGSVRVWDLKD-----LGNEVSVTGNYSDTVNGVSLNP  350 (406)
T ss_pred             eee--------ccCCCccEEEEecCC-----CCCcccccccccccccceecCc
Confidence            888        999999999999995     3777888888999999999988

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9e-26  Score=172.77  Aligned_cols=255  Identities=15%  Similarity=0.221  Sum_probs=193.9

Q ss_pred             eeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE
Q 016547            3 LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL   82 (387)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~   82 (387)
                      .|+....+...+..      .....+.|..++.+++|.+  ...+++|+.||.|+.+|+.++             ....+
T Consensus        32 sWDgslrlYdv~~~------~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~-------------~~~~i   90 (323)
T KOG1036|consen   32 SWDGSLRLYDVPAN------SLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTG-------------NEDQI   90 (323)
T ss_pred             eccCcEEEEeccch------hhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCC-------------cceee
Confidence            46666666555443      2345668999999999987  456889999999999999988             33456


Q ss_pred             eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547           83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  162 (387)
Q Consensus        83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (387)
                      ..|.. +|.||.+++....+++|+.|++|++||.+........                                     
T Consensus        91 gth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------------------------------------  132 (323)
T KOG1036|consen   91 GTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------------------------------------  132 (323)
T ss_pred             ccCCC-ceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------------
Confidence            66776 7999999998889999999999999999853222111                                     


Q ss_pred             eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                          .....|.++....   +.|++|+.+..+.+||++....+.......-+-.++++++-| ++.=+++++.||.|.+=
T Consensus       133 ----d~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE  204 (323)
T KOG1036|consen  133 ----DQGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVE  204 (323)
T ss_pred             ----ccCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence                1134788888763   568999999999999999987655444455566889999999 88888999999998875


Q ss_pred             EeccCCCCCCCCceEEecccc---------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCcee
Q 016547          243 DRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  313 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  313 (387)
                      .+...+  ........|+.|.         -+|++|+|+|-... ||+|+.||.|.+||+...+               .
T Consensus       205 ~~d~s~--~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-faTgGsDG~V~~Wd~~~rK---------------r  266 (323)
T KOG1036|consen  205 YFDDSE--EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-FATGGSDGIVNIWDLFNRK---------------R  266 (323)
T ss_pred             ccCCch--HHhhhceeEEeeecccCCceEEEEeceeEeccccce-EEecCCCceEEEccCcchh---------------h
Confidence            554420  0023445555553         37999999998764 7899999999999998742               2


Q ss_pred             eeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          314 FFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       314 ~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      +..+...+..|.+++|+.+|..|++++|.
T Consensus       267 l~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  267 LKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             hhhccCCCCceEEEEeccCCCeEEEEech
Confidence            44556667789999999999998887763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-28  Score=208.90  Aligned_cols=244  Identities=21%  Similarity=0.397  Sum_probs=206.9

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  124 (387)
                      .+++..-.+-.+++||.+..                  ..|.. .|.++..-..++.+++|+.|..+-+|.+.+..    
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~------------------~~hsa-av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----   61 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREF------------------VAHSA-AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----   61 (825)
T ss_pred             cccceeeeeeccccccchhh------------------hhhhh-hhceeeeeccceeeccCCCceeeccccccCCc----
Confidence            34444445556677776543                  34555 57787776678899999999999999886432    


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                                                          .+..+.+|..+|.++.|++.. .++++|+.+|+|++||++..+ 
T Consensus        62 ------------------------------------~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk-  103 (825)
T KOG0267|consen   62 ------------------------------------AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK-  103 (825)
T ss_pred             ------------------------------------hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh-
Confidence                                                234578999999999999987 899999999999999999887 


Q ss_pred             ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC
Q 016547          205 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  284 (387)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~  284 (387)
                       .++.+.+|...+.++.|+| -+.+++.|+.|+.+++||.+.      ..+.+.+.+|...+..+.|+|+|++ ++++++
T Consensus       104 -~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~e  174 (825)
T KOG0267|consen  104 -IVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRW-VASGGE  174 (825)
T ss_pred             -hhhhhhccccCcceeeecc-ceEEeccccccccceehhhhc------cCceeeecCCcceeEEEeecCCCce-eeccCC
Confidence             6788999999999999999 899999999999999999998      7899999999999999999999996 679999


Q ss_pred             CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547          285 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  364 (387)
Q Consensus       285 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~  364 (387)
                      |..++|||...+               .+...+..|+..+..+.|+|.. +|++       +||.|++|++||+.     
T Consensus       175 d~tvki~d~~ag---------------k~~~ef~~~e~~v~sle~hp~e-~Lla-------~Gs~d~tv~f~dle-----  226 (825)
T KOG0267|consen  175 DNTVKIWDLTAG---------------KLSKEFKSHEGKVQSLEFHPLE-VLLA-------PGSSDRTVRFWDLE-----  226 (825)
T ss_pred             cceeeeeccccc---------------ccccccccccccccccccCchh-hhhc-------cCCCCceeeeeccc-----
Confidence            999999999875               4566788999999999999965 4444       88899999999999     


Q ss_pred             ccchhhhhhhccCceEEEeeecC
Q 016547          365 PQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       365 ~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                       +-+.+.........|.+++|.|
T Consensus       227 -tfe~I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  227 -TFEVISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             -eeEEeeccCCccCCceeeeecC
Confidence             6777777777788999999986

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.4e-26  Score=185.04  Aligned_cols=289  Identities=12%  Similarity=0.210  Sum_probs=209.6

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~  109 (387)
                      .+.|+++.|+| ...+|++++.||+++||.++....          ..++.+.-... +|.+.+|.|+|. .+++++...
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N----------~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrk  280 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVN----------PKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRK  280 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccC----------hhheeeeeccC-ccceeeecCCCceEEEecccce
Confidence            58899999999 889999999999999999987631          33444443343 789999999999 899999999


Q ss_pred             eEEEEEcCCCcCccccCCCccc-------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          110 SVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ....||+.+.+......+....       ..+....  ........+.+.+....+.+.+..++- .+.|..+.|+.++ 
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSds-  356 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDS-  356 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCC-
Confidence            9999999887554433332222       0111111  222233445555555555555555443 4679999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      ..|++++.+|.|.+||++...  ++..+.... -.-++++.++ ++.+||+|+..|.|.|||..+-......+++..+..
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN  433 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN  433 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence            777777888999999999886  555554322 2335777788 899999999999999999776444444678888887


Q ss_pred             ccceEEEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      -...|+++.|+++.+ |||.++  .+..+++-.+........       +|.     ....-+.|++|+|+|.+.+|+  
T Consensus       434 Ltt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsN-------fP~-----~n~~vg~vtc~aFSP~sG~lA--  498 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSN-------FPT-----SNTKVGHVTCMAFSPNSGYLA--  498 (514)
T ss_pred             hheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeecc-------CCC-----CCCcccceEEEEecCCCceEE--
Confidence            788999999999998 566666  466788888876422111       111     022335789999999999988  


Q ss_pred             ecCCCCCCCCCceEEEEecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~  359 (387)
                            .|..+|.|.+|.+.
T Consensus       499 ------vGNe~grv~l~kL~  512 (514)
T KOG2055|consen  499 ------VGNEAGRVHLFKLH  512 (514)
T ss_pred             ------eecCCCceeeEeec
Confidence                  78888999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.3e-25  Score=187.28  Aligned_cols=262  Identities=11%  Similarity=0.106  Sum_probs=185.3

Q ss_pred             cCCCcEEEEEecCCCCcE-EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ec
Q 016547           29 IHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GG  106 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~  106 (387)
                      .+...+.+++|+| +++. +++++.++.|++||..++            +....+..+..  +..++|+|+++.+++ ++
T Consensus        28 ~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        28 PVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATG------------EVIGTLPSGPD--PELFALHPNGKILYIANE   92 (300)
T ss_pred             ECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCC------------cEEEeccCCCC--ccEEEECCCCCEEEEEcC
Confidence            3344578899999 5554 477788999999999887            44444544443  457899999997754 45


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .|+.|++||+.+....                                        ..+. +...+.+++|+|++ .+++
T Consensus        93 ~~~~l~~~d~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~dg-~~l~  130 (300)
T TIGR03866        93 DDNLVTVIDIETRKVL----------------------------------------AEIP-VGVEPEGMAVSPDG-KIVV  130 (300)
T ss_pred             CCCeEEEEECCCCeEE----------------------------------------eEee-CCCCcceEEECCCC-CEEE
Confidence            6899999999753221                                        1111 12345789999999 6777


Q ss_pred             EecCCC-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547          187 SVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHS-  263 (387)
Q Consensus       187 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-  263 (387)
                      +++.++ .+.+||.++.+  ...... ....+..++|+| ++++|+++ ..++.|++||+++      ++.+..+..+. 
T Consensus       131 ~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~~  200 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYE--IVDNVL-VDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEIP  200 (300)
T ss_pred             EEecCCCeEEEEeCCCCe--EEEEEE-cCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeeccc
Confidence            776654 57788987765  232222 334567899999 88877544 4699999999998      66655543221 


Q ss_pred             ------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          264 ------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       264 ------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                            .....++|+|++++++++.+.++.+.+||+++...               .... .+...+.+++|+|++++++
T Consensus       201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---------------~~~~-~~~~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---------------LDYL-LVGQRVWQLAFTPDEKYLL  264 (300)
T ss_pred             ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---------------EEEE-EeCCCcceEEECCCCCEEE
Confidence                  12346889999998766666678899999976421               2111 2345788999999999988


Q ss_pred             EEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++.       +.+|.|++||+.      +++++.+++.. ...+.++|+|
T Consensus       265 ~~~-------~~~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       265 TTN-------GVSNDVSVIDVA------ALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEc-------CCCCeEEEEECC------CCcEEEEEEcc-cccceeEeCC
Confidence            533       445999999999      78888888754 6669999987

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.3e-26  Score=196.80  Aligned_cols=263  Identities=17%  Similarity=0.333  Sum_probs=205.4

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      ..|.+.-+.|+|.| ++++|.+++.||.|++|+....+.          .|.. +..+.. .|.+++.  ++.+|++|+.
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e----------~P~t-i~~~g~-~v~~ia~--~s~~f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEE----------EPET-IDISGE-LVSSIAC--YSNHFLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCccc----------CCch-hhccCc-eeEEEee--cccceEEeec
Confidence            47999999999999 888999999999999999876621          1111 111333 5666665  5669999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      +++|.+|.+..+..                                        -..+...+-++++++++.+| .+++.
T Consensus        75 ~~tv~~y~fps~~~----------------------------------------~~iL~Rftlp~r~~~v~g~g-~~iaa  113 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEE----------------------------------------DTILARFTLPIRDLAVSGSG-KMIAA  113 (933)
T ss_pred             cceEEEeeCCCCCc----------------------------------------cceeeeeeccceEEEEecCC-cEEEe
Confidence            99999999875432                                        13344556789999999998 89999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc------
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG------  261 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~------  261 (387)
                      |+.|-.|++-++.+..  ....+.+|.++|.++.|+| .+++||+.+.||.|++||+.+      +.....+.+      
T Consensus       114 gsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n~  184 (933)
T KOG1274|consen  114 GSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDNE  184 (933)
T ss_pred             ecCceeEEEEeccccc--hheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCcccc
Confidence            9999999999998877  5778889999999999999 999999999999999999998      555544432      


Q ss_pred             --ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          262 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       262 --~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                        ....+..++|+|+|..+ +..+.|+.|++|+.......             .......+...+..+.|+|+|.||+  
T Consensus       185 ~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~we~~-------------f~Lr~~~~ss~~~~~~wsPnG~YiA--  248 (933)
T KOG1274|consen  185 FILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGWELQ-------------FKLRDKLSSSKFSDLQWSPNGKYIA--  248 (933)
T ss_pred             ccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCceeh-------------eeecccccccceEEEEEcCCCcEEe--
Confidence              13567889999997765 46667999999999886332             1222233555699999999999998  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                            +++.||.|.|||+.      +-    +-......|.+++|.|
T Consensus       249 ------As~~~g~I~vWnv~------t~----~~~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  249 ------ASTLDGQILVWNVD------TH----ERHEFKRAVCCEAWKP  280 (933)
T ss_pred             ------eeccCCcEEEEecc------cc----hhccccceeEEEecCC
Confidence                  78888999999999      41    1133456788888876

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=186.42  Aligned_cols=286  Identities=16%  Similarity=0.241  Sum_probs=204.8

Q ss_pred             ecCCCcEEEEEecCCCC-cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEe
Q 016547           28 IIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG  105 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~  105 (387)
                      .-|.+.|++++|+|... .++|+|..-|+|-+||+.+.+.        ....+..+..|.. +|.+|.|+|. ...+++.
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~-~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSG-PVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCc-cccceEecCCChhheeee
Confidence            34889999999999655 7999999999999999964321        1245677888887 7999999995 4578999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      |.||+|++-|+++......                                      ..+......+..+.|+.+. ..+
T Consensus       254 SyDGtiR~~D~~~~i~e~v--------------------------------------~s~~~d~~~fs~~d~~~e~-~~v  294 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEV--------------------------------------LSLDTDNIWFSSLDFSAES-RSV  294 (498)
T ss_pred             ccCceeeeeeecchhhHHH--------------------------------------hhcCccceeeeeccccCCC-ccE
Confidence            9999999999987543211                                      1122234457778888877 566


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      +.+..=|...+||+++... ....+..|...|++|+++|....+|++++.|++.+|||+|......  .++...-.|...
T Consensus       295 l~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~Hrrs  371 (498)
T KOG4328|consen  295 LFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRS  371 (498)
T ss_pred             EEeecccceEEEEeecCCc-cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--Ccceecccccce
Confidence            7777777999999999874 2455667888999999999888999999999999999999865321  134455569999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      |.+..|||.+.. |++.+.|..|+|||..-.+...        .+...+..-.-+..  .....+|.|+..+++      
T Consensus       372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~--------~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~------  436 (498)
T KOG4328|consen  372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKD--------EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV------  436 (498)
T ss_pred             eeeeEEcCCCCc-eEeeccCCceEEeecccccccC--------CccceeeccCcccccccchhheeCCCccEEE------
Confidence            999999999887 5688899999999985211110        00111111111212  345568999877666      


Q ss_pred             CCCCCCCceEEEEecCCCcccccchhhhhhhccCc-eEEEe-eecC
Q 016547          344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA-HVISC-TSKP  387 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~f~P  387 (387)
                        +|-.-..|-|+|-.      .++.+.++..... .|.++ .|||
T Consensus       437 --vg~~~r~IDv~~~~------~~q~v~el~~P~~~tI~~vn~~HP  474 (498)
T KOG4328|consen  437 --VGRYPRPIDVFDGN------GGQMVCELHDPESSTIPSVNEFHP  474 (498)
T ss_pred             --EeccCcceeEEcCC------CCEEeeeccCccccccccceeecc
Confidence              44555789999988      5665665543332 44443 4554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-27  Score=212.25  Aligned_cols=279  Identities=16%  Similarity=0.325  Sum_probs=213.7

Q ss_pred             ceeeccccccCcceeeeeeecCCCcEEEEEecCCCCc---EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc
Q 016547            9 LLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH   85 (387)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h   85 (387)
                      .++.++.......++..-.+.-...-+.++|.+....   +||.|..||.|.+||......      ......+.....|
T Consensus        42 Eifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~~~~~la~~~~h  115 (1049)
T KOG0307|consen   42 EIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NASEEVLATKSKH  115 (1049)
T ss_pred             ceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc------CcchHHHhhhccc
Confidence            3444444433333444444455667789999984333   599999999999999876411      1122456678889


Q ss_pred             CCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           86 QDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        86 ~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      ++ .|..+.|++... .|++|+.||.|.|||+++........                                      
T Consensus       116 ~G-~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--------------------------------------  156 (1049)
T KOG0307|consen  116 TG-PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--------------------------------------  156 (1049)
T ss_pred             CC-ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------------------------------------
Confidence            88 799999999655 99999999999999998743221110                                      


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC--CCeeEEEecCCCCCeEEEeeCCC---eE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSADN---SV  239 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg---~i  239 (387)
                      -....+.|.+++|+..-.++|++++.+|.+.|||++..+  .+..+..+.  ..+..++|+|.....+++++.|.   .|
T Consensus       157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi  234 (1049)
T KOG0307|consen  157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI  234 (1049)
T ss_pred             CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence            112357899999998877899999999999999999886  333343333  35779999997777888887764   69


Q ss_pred             EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      .+||+|..     ..+++.+++|+..|.++.|++.+..++++++.|+.|.+|+.+++               +.+..+..
T Consensus       235 qlWDlR~a-----ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---------------Evl~~~p~  294 (1049)
T KOG0307|consen  235 QLWDLRFA-----SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---------------EVLGELPA  294 (1049)
T ss_pred             Eeeccccc-----CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---------------eEeeecCC
Confidence            99999975     57888899999999999999998667889999999999999985               45666777


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ...++..+.|+|..+.++++++-       ||.|.||.+...
T Consensus       295 ~~nW~fdv~w~pr~P~~~A~asf-------dgkI~I~sl~~~  329 (1049)
T KOG0307|consen  295 QGNWCFDVQWCPRNPSVMAAASF-------DGKISIYSLQGT  329 (1049)
T ss_pred             CCcceeeeeecCCCcchhhhhee-------ccceeeeeeecC
Confidence            78899999999999988875554       499999999854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=8.1e-27  Score=183.11  Aligned_cols=229  Identities=18%  Similarity=0.369  Sum_probs=178.6

Q ss_pred             EeccCCCceEEEEECCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (387)
                      ...|.+ .++-+.-++-+  .+.++=+..|.|.||++...........                        ........
T Consensus       147 ~i~h~g-~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------------------~~~~~s~~  201 (440)
T KOG0302|consen  147 SIPHYG-GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG------------------------LEVKDSEF  201 (440)
T ss_pred             cccccc-ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc------------------------cccccccc
Confidence            344555 56777776654  4566677889999999975422211110                        00111456


Q ss_pred             CCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547          160 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNS  238 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  238 (387)
                      +++.++.+|...-.++.|+|.....+++|.--+.|++|...++.+.. ...+.+|...|-.++|+|.....|++|+.||+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            78889999999999999999654468898888999999998876422 23466799999999999988899999999999


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      |+|||+|...    .+.....++|.+.|+-|.|+..-. +||+|++||.++|||++.....            +.+..+.
T Consensus       282 IrIWDiRs~~----~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~------------~pVA~fk  344 (440)
T KOG0302|consen  282 IRIWDIRSGP----KKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG------------QPVATFK  344 (440)
T ss_pred             EEEEEecCCC----ccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC------------CcceeEE
Confidence            9999999843    233344488999999999999888 7899999999999999985322            4578889


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      -|..+|+++.|+|.....++       ++|.|+.|.|||+.
T Consensus       345 ~Hk~pItsieW~p~e~s~ia-------asg~D~QitiWDls  378 (440)
T KOG0302|consen  345 YHKAPITSIEWHPHEDSVIA-------ASGEDNQITIWDLS  378 (440)
T ss_pred             eccCCeeEEEeccccCceEE-------eccCCCcEEEEEee
Confidence            99999999999999888777       55666999999997

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.9e-25  Score=170.77  Aligned_cols=241  Identities=20%  Similarity=0.299  Sum_probs=186.5

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .++-.|..++|..... .++.++.  |.+|+..++.+.            +.++.+.||.. .|+.|+.+|-+..+++++
T Consensus        54 skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN------------kylRYF~GH~~-~V~sL~~sP~~d~FlS~S  119 (311)
T KOG1446|consen   54 SKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN------------KYLRYFPGHKK-RVNSLSVSPKDDTFLSSS  119 (311)
T ss_pred             cccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC------------ceEEEcCCCCc-eEEEEEecCCCCeEEecc
Confidence            4556788888887444 4444444  889999999999            89999999998 799999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .|++|++||++...+.                                        ..+.  ...-..++|.|+| -++|
T Consensus       120 ~D~tvrLWDlR~~~cq----------------------------------------g~l~--~~~~pi~AfDp~G-LifA  156 (311)
T KOG1446|consen  120 LDKTVRLWDLRVKKCQ----------------------------------------GLLN--LSGRPIAAFDPEG-LIFA  156 (311)
T ss_pred             cCCeEEeeEecCCCCc----------------------------------------eEEe--cCCCcceeECCCC-cEEE
Confidence            9999999999854331                                        1111  1222357899999 7888


Q ss_pred             EecCCCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ++.....|++||++.-.......+.   +.....+.|.|+| +|++++.++..+.+++.|.-.      +..+.++..+.
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~  229 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYP  229 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccC------CcEeeeEeecc
Confidence            8888779999999986432333332   3466789999999 999999999999999999998      88888887665


Q ss_pred             ceE---EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEE
Q 016547          264 AAV---LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       264 ~~i---~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s  339 (387)
                      ..-   ....|.||+++++ +|+.||+|.+|+++++.+               +..+.+ +.+++.++.|+|....++ +
T Consensus       230 ~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~tg~~---------------v~~~~~~~~~~~~~~~fnP~~~mf~-s  292 (311)
T KOG1446|consen  230 NAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLETGKK---------------VAVLRGPNGGPVSCVRFNPRYAMFV-S  292 (311)
T ss_pred             CCCCcceeEEECCCCcEEE-EecCCCcEEEEEcCCCcE---------------eeEecCCCCCCccccccCCceeeee-e
Confidence            332   5788999999765 999999999999988633               444555 788999999999755433 3


Q ss_pred             ecCCCCCCCCCceEEEEecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +         +..+.+|=..
T Consensus       293 a---------~s~l~fw~p~  303 (311)
T KOG1446|consen  293 A---------SSNLVFWLPD  303 (311)
T ss_pred             c---------CceEEEEecc
Confidence            2         2578888665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.5e-26  Score=193.84  Aligned_cols=291  Identities=14%  Similarity=0.204  Sum_probs=215.9

Q ss_pred             ceeeeeeecCCCcEEEEEecCC----------CCcEEEEecCCCcEEEEeccCCCCcccc----c---------CCCCC-
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQ----------NTKIVATHTDSPDVLIWDVEAQPNRHAV----L---------GATNS-   76 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~----------~~~~l~t~~~dg~v~iwd~~~~~~~~~~----~---------~~~~~-   76 (387)
                      ..+....+-|...|+.+.-.|-          -...++|++.|++|++||++.......+    .         ..... 
T Consensus       359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q  438 (1080)
T KOG1408|consen  359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ  438 (1080)
T ss_pred             ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence            3445566779999999886661          1246899999999999999874322110    0         00000 


Q ss_pred             -----------CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCC
Q 016547           77 -----------RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  145 (387)
Q Consensus        77 -----------~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (387)
                                 +.....-+... .+.+++.+|+|++|++|..-|.++||++.+..                         
T Consensus       439 ~~~d~~~~~fdka~~s~~d~r~-G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------------------------  492 (1080)
T KOG1408|consen  439 IMHDASAGIFDKALVSTCDSRF-GFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------------------------  492 (1080)
T ss_pred             hhhhccCCcccccchhhcCccc-ceEEEEECCCcceecccCccCceEEEEehhhh-------------------------
Confidence                       01111111122 48899999999999999999999999997532                         


Q ss_pred             CCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec
Q 016547          146 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  223 (387)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  223 (387)
                                     .......|..+|.|+.|+..  +..+|++++.|..|++||+...-. .+..+.+|.+.|+++.|.
T Consensus       493 ---------------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa  556 (1080)
T KOG1408|consen  493 ---------------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFA  556 (1080)
T ss_pred             ---------------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhhcccccceeEEEEe
Confidence                           23556789999999999753  346899999999999999976553 567788999999999998


Q ss_pred             CCCC--CeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-----ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          224 PLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       224 ~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      - .+  ..+++++.|..|.+--.+.      ......+..     ....++.++..|..++ +++++.|..|+|||+..+
T Consensus       557 ~-~gln~~MiscGADksimFr~~qk------~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-v~t~cQDrnirif~i~sg  628 (1080)
T KOG1408|consen  557 C-NGLNRKMISCGADKSIMFRVNQK------ASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-VVTVCQDRNIRIFDIESG  628 (1080)
T ss_pred             e-cCCceEEEeccCchhhheehhcc------ccCceeccccccccccceEEEeeeCCCcce-EEEEecccceEEEecccc
Confidence            7 54  7889999998875432221      111111111     2357899999999996 569999999999999996


Q ss_pred             CceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          297 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      ++.            +.+..-.+|++....+...|.|-|++.+|        .|.++.++|+.      +++++..+.||
T Consensus       629 Kq~------------k~FKgs~~~eG~lIKv~lDPSgiY~atSc--------sdktl~~~Df~------sgEcvA~m~GH  682 (1080)
T KOG1408|consen  629 KQV------------KSFKGSRDHEGDLIKVILDPSGIYLATSC--------SDKTLCFVDFV------SGECVAQMTGH  682 (1080)
T ss_pred             cee------------eeecccccCCCceEEEEECCCccEEEEee--------cCCceEEEEec------cchhhhhhcCc
Confidence            443            23444456888889999999999999544        45899999999      89999999999


Q ss_pred             CceEEEeeecC
Q 016547          377 KAHVISCTSKP  387 (387)
Q Consensus       377 ~~~v~~~~f~P  387 (387)
                      ...|+.+.|.|
T Consensus       683 sE~VTG~kF~n  693 (1080)
T KOG1408|consen  683 SEAVTGVKFLN  693 (1080)
T ss_pred             chheeeeeecc
Confidence            99999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=188.49  Aligned_cols=268  Identities=16%  Similarity=0.248  Sum_probs=214.5

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -+.+|.+++|+. ..+.||.+-.||.|.||++...           +-....+.++.++.|.+++|+ ++..|.+.+.+|
T Consensus        24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~-----------w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg   90 (691)
T KOG2048|consen   24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN-----------WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG   90 (691)
T ss_pred             eccceEEEEEec-cCCceeeeccCCcEEEEccCCC-----------ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCc
Confidence            478999999999 6677999999999999999876           255677889999999999999 566788888899


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|.-||+.+...                                        +..+....+.|++++.+|.+ ..++.|+
T Consensus        91 ~i~EwDl~~lk~----------------------------------------~~~~d~~gg~IWsiai~p~~-~~l~Igc  129 (691)
T KOG2048|consen   91 SITEWDLHTLKQ----------------------------------------KYNIDSNGGAIWSIAINPEN-TILAIGC  129 (691)
T ss_pred             eEEEEecccCce----------------------------------------eEEecCCCcceeEEEeCCcc-ceEEeec
Confidence            999999986433                                        34555567899999999998 7899999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-------ec-c
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-------FE-G  261 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-------~~-~  261 (387)
                      .||.+..++...++....+.+....+.+.+++|+| ++..+++|+.||.|++||...      +..+..       +. .
T Consensus       130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~  202 (691)
T KOG2048|consen  130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKR  202 (691)
T ss_pred             CCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccC
Confidence            99988888887776444455556678999999999 999999999999999999998      544441       11 1


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ...-|.++.|-.++.  +++|..-|+|.+||-..+               .++..+..|...|.+++..+++++++    
T Consensus       203 ~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~g---------------TLiqS~~~h~adVl~Lav~~~~d~vf----  261 (691)
T KOG2048|consen  203 EPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFG---------------TLIQSHSCHDADVLALAVADNEDRVF----  261 (691)
T ss_pred             CceEEEEEEEeecCc--EEEecCCceEEEEcccCc---------------chhhhhhhhhcceeEEEEcCCCCeEE----
Confidence            334578888888874  679999999999999886               45667788999999999999999999    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                          ++|.|+.|..|.......+  .........|...|.+++.
T Consensus       262 ----saGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av  299 (691)
T KOG2048|consen  262 ----SAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAV  299 (691)
T ss_pred             ----EccCCCceEEEEecCCccc--eeeeccccCCcccceeeee
Confidence                8899999999988742110  1122334567777777664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=5.5e-26  Score=189.96  Aligned_cols=279  Identities=19%  Similarity=0.285  Sum_probs=203.3

Q ss_pred             EEEecC--CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547           36 RIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  113 (387)
Q Consensus        36 ~i~~~~--~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v  113 (387)
                      +..|++  ....+||.+..||.|.++|.....-..      +...+.....|.. +|..+.|.|....|++++.|.++++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~------ee~~lk~~~aH~n-AifDl~wapge~~lVsasGDsT~r~  126 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL------EERQLKKPLAHKN-AIFDLKWAPGESLLVSASGDSTIRP  126 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcch------hhhhhcccccccc-eeEeeccCCCceeEEEccCCceeee
Confidence            355554  456789999999999999987653221      1133456677887 7999999996678999999999999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      ||+++.....                                      ...+.+|...|.+++|.|.++..|++|+.||.
T Consensus       127 Wdvk~s~l~G--------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~  168 (720)
T KOG0321|consen  127 WDVKTSRLVG--------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE  168 (720)
T ss_pred             eeeccceeec--------------------------------------ceeecccccccchhhhccCCCcceeeccCCCc
Confidence            9998654321                                      13467999999999999999899999999999


Q ss_pred             EEEEEccCCCCc-------------------------eeEEeeccCCCeeE---EEecCCCCCeEEEeeC-CCeEEEEEe
Q 016547          194 LILWDARVGTSP-------------------------VIKVEKAHDADLHC---VDWNPLDDNLILTGSA-DNSVRMFDR  244 (387)
Q Consensus       194 i~iwd~~~~~~~-------------------------~~~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~~~d~  244 (387)
                      |.|||++.....                         .+.....+...|.+   +-+.. |...||+++. |+.|++||+
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEee
Confidence            999998753210                         01112233333444   44444 7889999888 999999999


Q ss_pred             ccCCCCCCCCceEEe--ccc---cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          245 RNLTSNGVGSPINKF--EGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      +........++....  ..|   .-.+.++.....|.+|+|+|. |+.|++|++......             .+..+.+
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~s-------------P~~~~sg  313 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSIS-------------PVAEFSG  313 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcC-------------chhhccC
Confidence            986443323333322  233   346788888888999998887 999999999986442             2333333


Q ss_pred             CCC--CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          320 HRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       320 ~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +..  .-..-..+|++.+++        +|+.|...++|.++.     -......+.+|.-.|++|+|.|
T Consensus       314 ~~~~sf~vks~lSpd~~~l~--------SgSsd~~ayiw~vs~-----~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  314 KLNSSFYVKSELSPDDCSLL--------SGSSDEQAYIWVVSS-----PEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             cccceeeeeeecCCCCceEe--------ccCCCcceeeeeecC-----ccCChhhhhCcceEEEEEeecc
Confidence            322  112334689999998        999999999999996     3566788899999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=1.9e-26  Score=187.35  Aligned_cols=265  Identities=18%  Similarity=0.263  Sum_probs=204.5

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  113 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v  113 (387)
                      +..+.|...+.-.+|+.+.|..|++|.-.....        ....+..+.+...   .|++......|+++|+..+.|+|
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~--------~Vp~~~k~~gd~~---~Cv~~~s~S~y~~sgG~~~~Vki  105 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP--------EVPRVRKLTGDNA---FCVACASQSLYEISGGQSGCVKI  105 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCC--------ccceeeccccchH---HHHhhhhcceeeeccCcCceeee
Confidence            899999884333344556688899997554410        1122233344332   45555555689999999999999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      ||++...                                        ..+.+++|+..|+++.+.-.+ .++++++..|.
T Consensus       106 wdl~~kl----------------------------------------~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGd  144 (673)
T KOG4378|consen  106 WDLRAKL----------------------------------------IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGD  144 (673)
T ss_pred             hhhHHHH----------------------------------------HhhhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence            9998432                                        225678999999999999887 79999999999


Q ss_pred             EEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEEEE
Q 016547          194 LILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQW  271 (387)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~  271 (387)
                      |.+..+.++..  ...+.. ....|+-+.|+|....+|.+++.+|.|.+||...      ..++. -.+.|..+...|+|
T Consensus       145 iiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g------~sp~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  145 IIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG------MSPIFHASEAHSAPCRGICF  216 (673)
T ss_pred             EEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC------CCcccchhhhccCCcCccee
Confidence            99999998873  333332 2456778999997777888999999999999997      44444 45689999999999


Q ss_pred             cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547          272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  351 (387)
Q Consensus       272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg  351 (387)
                      +|.++.||++.+.|.+|.+||++....               ... ..-..+.+.++|+++|-+|+        .|...|
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s---------------~~~-l~y~~Plstvaf~~~G~~L~--------aG~s~G  272 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQAS---------------TDR-LTYSHPLSTVAFSECGTYLC--------AGNSKG  272 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccc---------------cce-eeecCCcceeeecCCceEEE--------eecCCc
Confidence            999999999999999999999986321               111 12345889999999999888        677779


Q ss_pred             eEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          352 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       352 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .|..||++.     ...++.++..|...|++++|.|
T Consensus       273 ~~i~YD~R~-----~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  273 ELIAYDMRS-----TKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             eEEEEeccc-----CCCCceEeeecccceeEEEeee
Confidence            999999996     5788999999999999999976

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=5.3e-26  Score=190.05  Aligned_cols=282  Identities=21%  Similarity=0.344  Sum_probs=191.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE--EEeccCCCceEEEEECCCCC-E
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQDNAEFALAMCPTEP-Y  101 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~h~~~~v~~~~~~~~~~-~  101 (387)
                      .....|.+.|..+.|.| ....|++++.|.++++||+.+.            +...  .+.||.. .|.+++|.|... .
T Consensus        94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s------------~l~G~~~~~GH~~-SvkS~cf~~~n~~v  159 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTS------------RLVGGRLNLGHTG-SVKSECFMPTNPAV  159 (720)
T ss_pred             cccccccceeEeeccCC-CceeEEEccCCceeeeeeeccc------------eeecceeeccccc-ccchhhhccCCCcc
Confidence            34457999999999999 8889999999999999999988            3333  4889998 589999999655 6


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE---EEEc
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED---VTFC  178 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~  178 (387)
                      +++|+.||.|.|||++-............. .+           ...+. .....+..+.+.....+...|.+   +.+.
T Consensus       160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~-~~-----------~~n~~-ptpskp~~kr~~k~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  160 FCTGGRDGEILLWDCRCNGVDALEEFDNRI-YG-----------RHNTA-PTPSKPLKKRIRKWKAASNTIFSSVTVVLF  226 (720)
T ss_pred             eeeccCCCcEEEEEEeccchhhHHHHhhhh-hc-----------cccCC-CCCCchhhccccccccccCceeeeeEEEEE
Confidence            889999999999999754210000000000 00           00000 00000111112223344444444   4455


Q ss_pred             cCCCeeEEEecC-CCeEEEEEccCCCCc------eeEEeecc---CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          179 PSSAQEFCSVGD-DSCLILWDARVGTSP------VIKVEKAH---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       179 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~------~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      .|. ..|++++. |+.|++||++.....      ....+..|   .-.+.++..+. .|.+|.+.+.|+.|++|++....
T Consensus       227 kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s  304 (720)
T KOG0321|consen  227 KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLS  304 (720)
T ss_pred             ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccC
Confidence            565 67888877 999999999976421      11122223   23567888887 77888888889999999999754


Q ss_pred             CCCCCCceEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          249 SNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                          ..++..+.++..  .-..-..+|++.++ ++|+.|....+|.+.....+              ...+.+|...|+.
T Consensus       305 ----~sP~~~~sg~~~~sf~vks~lSpd~~~l-~SgSsd~~ayiw~vs~~e~~--------------~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  305 ----ISPVAEFSGKLNSSFYVKSELSPDDCSL-LSGSSDEQAYIWVVSSPEAP--------------PALLLGHTREVTT  365 (720)
T ss_pred             ----cCchhhccCcccceeeeeeecCCCCceE-eccCCCcceeeeeecCccCC--------------hhhhhCcceEEEE
Confidence                345555554322  12233468999975 69999999999999986443              4456899999999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ++|.|..-.-+++|++|       .+++||++.+-
T Consensus       366 V~w~pS~~t~v~TcSdD-------~~~kiW~l~~~  393 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDD-------FRVKIWRLSNG  393 (720)
T ss_pred             EeeccccCCCceeeccC-------cceEEEeccCc
Confidence            99999776666766555       99999999743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.1e-27  Score=210.05  Aligned_cols=278  Identities=20%  Similarity=0.368  Sum_probs=210.4

Q ss_pred             EEEEecCCCCcEEEEecC----------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE---
Q 016547           35 NRIRELPQNTKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY---  101 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~---  101 (387)
                      ..++|+|....++|+|..          +.++-||.++......      .-++...+....  ..+.++|.+.|..   
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~------dlk~~~s~~s~~--rF~kL~W~~~g~~~~G   81 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS------DLKPVGSLQSSN--RFNKLAWGSYGSHSHG   81 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc------cccccccccccc--cceeeeecccCCCccc
Confidence            346788855447777643          4455666554431110      012333333333  4689999998776   


Q ss_pred             -EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          102 -VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       102 -l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                       |+.|..||.|.+||.....                                  .......+..+..|.+.|..+.|++.
T Consensus        82 lIaGG~edG~I~ly~p~~~~----------------------------------~~~~~~~la~~~~h~G~V~gLDfN~~  127 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASII----------------------------------ANASEEVLATKSKHTGPVLGLDFNPF  127 (1049)
T ss_pred             eeeccccCCceEEecchhhc----------------------------------cCcchHHHhhhcccCCceeeeecccc
Confidence             8888999999999987521                                  11223445677889999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      .++++++|+.||.|.|||+...+.+.........+.|.+++|+......|++++.+|.+.|||+|.      .+++..+.
T Consensus       128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------~~pii~ls  201 (1049)
T KOG0307|consen  128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------KKPIIKLS  201 (1049)
T ss_pred             CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------CCcccccc
Confidence            988999999999999999998765433333345678999999987788999999999999999998      77777776


Q ss_pred             cccc--eEEEEEEcCCCCeeEEEecCCC---eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          261 GHSA--AVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       261 ~~~~--~i~~~~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      .+..  .+..++|+|++..-++++++|.   .|.+||+|....+              +..+.+|...|.+|.|++.+..
T Consensus       202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP--------------~k~~~~H~~GilslsWc~~D~~  267 (1049)
T KOG0307|consen  202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP--------------LKILEGHQRGILSLSWCPQDPR  267 (1049)
T ss_pred             cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc--------------hhhhcccccceeeeccCCCCch
Confidence            5554  4789999999865555666543   5999999975433              4556899999999999999977


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +++       |+|.|+.|.+|+.+      +++.+.++....+.+..+.|.|
T Consensus       268 lll-------SsgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  268 LLL-------SSGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             hhh-------cccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence            776       66666999999999      8999999999889999999987

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-24  Score=159.07  Aligned_cols=240  Identities=15%  Similarity=0.226  Sum_probs=171.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .|.+++|+|.|.+.++|+..+++++-....-.........     .                    ..+.......-+.|
T Consensus        34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea-----~--------------------~~pp~v~~kr~khh   88 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA-----A--------------------KQPPSVLCKRNKHH   88 (350)
T ss_pred             heeeEEecCCCceEEeccCCceEEEEccccccCccccccc-----c--------------------cCCCeEEeeecccc
Confidence            6899999999999999999999988765432111110000     0                    00000111334678


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce---eEEeeccCCCeeEEEe-----------------------
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV---IKVEKAHDADLHCVDW-----------------------  222 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~-----------------------  222 (387)
                      .+.|.|.+|+|.| .++++|++|.+|++.-+.......   ...+.-|.+.|..++|                       
T Consensus        89 kgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   89 KGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             CccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            9999999999999 899999999999987654332100   1122223333333333                       


Q ss_pred             -----------------------cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--c-----cceEEEEEEc
Q 016547          223 -----------------------NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H-----SAAVLCVQWS  272 (387)
Q Consensus       223 -----------------------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~-----~~~i~~~~~~  272 (387)
                                             +- ++-++++|+.|.+|++||++-      ..++..+..  |     .+.|.+++..
T Consensus       168 tdc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv------~~~v~~l~~~~~~~glessavaav~vd  240 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRV------NSCVNTLDNDFHDGGLESSAVAAVAVD  240 (350)
T ss_pred             eecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeec------cceeeeccCcccCCCcccceeEEEEEC
Confidence                                   22 567899999999999999998      666666532  2     3679999999


Q ss_pred             CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547          273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  352 (387)
Q Consensus       273 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~  352 (387)
                      |.|+ ||++|-.|....+||++..               ..+..+..|...|.++.|+|...|++        ||+.|..
T Consensus       241 psgr-ll~sg~~dssc~lydirg~---------------r~iq~f~phsadir~vrfsp~a~yll--------t~syd~~  296 (350)
T KOG0641|consen  241 PSGR-LLASGHADSSCMLYDIRGG---------------RMIQRFHPHSADIRCVRFSPGAHYLL--------TCSYDMK  296 (350)
T ss_pred             CCcc-eeeeccCCCceEEEEeeCC---------------ceeeeeCCCccceeEEEeCCCceEEE--------Eecccce
Confidence            9999 6889999999999999985               45777889999999999999877777        7777899


Q ss_pred             EEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          353 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       353 i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |++=|+.....  ..-++.....|++.+..+.|+|
T Consensus       297 ikltdlqgdla--~el~~~vv~ehkdk~i~~rwh~  329 (350)
T KOG0641|consen  297 IKLTDLQGDLA--HELPIMVVAEHKDKAIQCRWHP  329 (350)
T ss_pred             EEEeecccchh--hcCceEEEEeccCceEEEEecC
Confidence            99999983211  0112334567999999998887

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-25  Score=178.73  Aligned_cols=214  Identities=20%  Similarity=0.373  Sum_probs=166.5

Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      |+|+|.|..|..|.|||+.-.......-.     .+              ...........+.-..-.+|+..|..+.|+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~-----LG--------------s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVT-----LG--------------SKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cceEEEeccCceeEEecccccccccccee-----ec--------------hhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            67999999999999999863211110000     00              000000000011112234789999999999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ..-.+.|++|+.|.+|++||+.+++  +...+..|...|.++.|+|..+..|++|+.|++|.+.|.|..     ...-..
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-----~~s~~~  325 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-----SNSGKE  325 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-----cccCce
Confidence            8887899999999999999999999  667777899999999999989999999999999999999963     222233


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      ++ ..+.|-.++|.|.....+.++..||+++-+|+|..++              ++.++..|.++|.++++++..+.+++
T Consensus       326 wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--------------~vwt~~AHd~~ISgl~~n~~~p~~l~  390 (463)
T KOG0270|consen  326 WK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--------------PVWTLKAHDDEISGLSVNIQTPGLLS  390 (463)
T ss_pred             EE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC--------------ceeEEEeccCCcceEEecCCCCccee
Confidence            33 4678999999999988888999999999999998654              47888999999999999999998887


Q ss_pred             EecCCCCCCCCCceEEEEecCC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                             |++.|+.|++|++..
T Consensus       391 -------t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  391 -------TASTDKVVKLWKFDV  405 (463)
T ss_pred             -------eccccceEEEEeecC
Confidence                   666779999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.8e-25  Score=168.87  Aligned_cols=239  Identities=13%  Similarity=0.183  Sum_probs=183.6

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC--EE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YV  102 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~--~l  102 (387)
                      .....|.++|.+++|+. ++..+++|+.|+++++||+.++             ....+..|.. +|.++.|-+...  .|
T Consensus        66 ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~-------------Q~~~v~~Hd~-pvkt~~wv~~~~~~cl  130 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG-------------QVSQVAAHDA-PVKTCHWVPGMNYQCL  130 (347)
T ss_pred             hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC-------------Ceeeeeeccc-ceeEEEEecCCCccee
Confidence            34457999999999999 8899999999999999999998             3556778887 799999987665  79


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      +|||.|++|++||++......                                        .+. -.+.+.++..-.   
T Consensus       131 ~TGSWDKTlKfWD~R~~~pv~----------------------------------------t~~-LPeRvYa~Dv~~---  166 (347)
T KOG0647|consen  131 VTGSWDKTLKFWDTRSSNPVA----------------------------------------TLQ-LPERVYAADVLY---  166 (347)
T ss_pred             EecccccceeecccCCCCeee----------------------------------------eee-ccceeeehhccC---
Confidence            999999999999998543221                                        111 134566666532   


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .+++++..+..|.+|+++.+..........-.-.++|++..+ +....+.|+.+|.+-+..+....    .+.-..|+-|
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~----~~~nFtFkCH  241 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPN----PKDNFTFKCH  241 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCC----ccCceeEEEe
Confidence            467888889999999998765322222333445688999988 78888999999999999888731    1333344444


Q ss_pred             c---------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547          263 S---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  333 (387)
Q Consensus       263 ~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  333 (387)
                      .         ..|++|+|+|.... |++.+.||+..+||-....               .+.....|..+|++.+|+.+|
T Consensus       242 R~~~~~~~~VYaVNsi~FhP~hgt-lvTaGsDGtf~FWDkdar~---------------kLk~s~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  242 RSTNSVNDDVYAVNSIAFHPVHGT-LVTAGSDGTFSFWDKDART---------------KLKTSETHPQPITCCSFNRNG  305 (347)
T ss_pred             ccCCCCCCceEEecceEeecccce-EEEecCCceEEEecchhhh---------------hhhccCcCCCccceeEecCCC
Confidence            3         35889999998774 6799999999999987642               244556788999999999999


Q ss_pred             CeEEEEecCC
Q 016547          334 PWTVVSVSDD  343 (387)
Q Consensus       334 ~~l~~s~s~d  343 (387)
                      .+++.+.+.|
T Consensus       306 ~ifaYA~gYD  315 (347)
T KOG0647|consen  306 SIFAYALGYD  315 (347)
T ss_pred             CEEEEEeecc
Confidence            9999888877

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-25  Score=169.32  Aligned_cols=253  Identities=18%  Similarity=0.301  Sum_probs=190.3

Q ss_pred             EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccC
Q 016547           47 VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD  126 (387)
Q Consensus        47 l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  126 (387)
                      +++|+....|.=+++.-.+....-.......++..+..|.+ .|++++.  ++.++++|+.|-+|+|||+.+...     
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~-sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----   75 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAG-SITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----   75 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeecccccccccc-ceeEEEe--cceeEeccCCCCcEEEEeccchhh-----
Confidence            56777776666666554431111111111245777889998 6999999  689999999999999999986433     


Q ss_pred             CCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-CeeEEEecCCCeEEEEEccCCCCc
Q 016547          127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSP  205 (387)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~  205 (387)
                                                         +..+-.|.+.|+++.|.+.. ...|++|+.||.|.+|+....+  
T Consensus        76 -----------------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--  118 (362)
T KOG0294|consen   76 -----------------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--  118 (362)
T ss_pred             -----------------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--
Confidence                                               35667899999999998864 1379999999999999998876  


Q ss_pred             eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547          206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  285 (387)
Q Consensus       206 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d  285 (387)
                      ++..+.+|.+.|+.++++| .+.+-++.+.|+.+++||+-.      ++.-..+.- ....+.+.|+|.|.++ +.++ -
T Consensus       119 ~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~------Gr~a~v~~L-~~~at~v~w~~~Gd~F-~v~~-~  188 (362)
T KOG0294|consen  119 LLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR------GRVAFVLNL-KNKATLVSWSPQGDHF-VVSG-R  188 (362)
T ss_pred             EeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhc------Cccceeecc-CCcceeeEEcCCCCEE-EEEe-c
Confidence            7899999999999999999 999999999999999999987      444333331 2223449999999974 4554 4


Q ss_pred             CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccc
Q 016547          286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  365 (387)
Q Consensus       286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~  365 (387)
                      ..|-+|.+......                ........+.++.|-. +..|+        +|+.|+.|++||.+      
T Consensus       189 ~~i~i~q~d~A~v~----------------~~i~~~~r~l~~~~l~-~~~L~--------vG~d~~~i~~~D~d------  237 (362)
T KOG0294|consen  189 NKIDIYQLDNASVF----------------REIENPKRILCATFLD-GSELL--------VGGDNEWISLKDTD------  237 (362)
T ss_pred             cEEEEEecccHhHh----------------hhhhccccceeeeecC-CceEE--------EecCCceEEEeccC------
Confidence            56999999874221                1112224566777764 56677        88888999999999      


Q ss_pred             cchhhhhhhccCceEEEeee
Q 016547          366 QDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       366 ~~~~~~~~~~~~~~v~~~~f  385 (387)
                      +..++.++.+|...|-++.+
T Consensus       238 s~~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  238 SDTPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             CCccceeeecchhheeeeEE
Confidence            68899999999999988764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=189.74  Aligned_cols=246  Identities=17%  Similarity=0.323  Sum_probs=205.3

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC---CCCEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLS  104 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~---~~~~l~s  104 (387)
                      .+-.-.+++++.+| ++++||+|..-|.++||++...            .....+..|.. .|.|+.|+.   ..++|++
T Consensus       456 ~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eAHes-EilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQEL------------EYTCFMEAHES-EILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cCcccceEEEEECC-CcceecccCccCceEEEEehhh------------hhhhheecccc-eeEEEeecCchhhhHhhhh
Confidence            34556799999999 9999999999999999999988            67778899998 799999986   3568999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Ce
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQ  183 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  183 (387)
                      ++.|+-|.|+|+..                                       ...+++++.+|...|+++.|...| ..
T Consensus       522 asrdRlIHV~Dv~r---------------------------------------ny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKR---------------------------------------NYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             ccCCceEEEEeccc---------------------------------------ccchhhhhcccccceeEEEEeecCCce
Confidence            99999999999973                                       344567889999999999998765 35


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEee-----ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      .+++++.|..|.+--.+....  ...+.     .....++.|++.| ...++++++.|..|+|||+.+      ++..+.
T Consensus       563 ~MiscGADksimFr~~qk~~~--g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~s------gKq~k~  633 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASS--GRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIES------GKQVKS  633 (1080)
T ss_pred             EEEeccCchhhheehhccccC--ceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccc------cceeee
Confidence            688999998876644332211  11121     1235688999999 999999999999999999999      888888


Q ss_pred             ecc---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          259 FEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       259 ~~~---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      |++   |++....+...|.|-| +|+.+.|.++.++|+..+               +++.+..||...|+.+.|.+|-+.
T Consensus       634 FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sg---------------EcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSG---------------ECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             ecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccc---------------hhhhhhcCcchheeeeeecccchh
Confidence            864   6677889999999997 568888999999999986               567888999999999999999999


Q ss_pred             EEEEecCCCCCCCCCceEEEEecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      |+        +.+.||.|.||.+.
T Consensus       698 lI--------SvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  698 LI--------SVSGDGCIFVWKLP  713 (1080)
T ss_pred             he--------eecCCceEEEEECc
Confidence            98        77778999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=6.7e-25  Score=166.69  Aligned_cols=253  Identities=21%  Similarity=0.365  Sum_probs=190.3

Q ss_pred             eecCCCcEEEEEecCCC----CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE----eccCCCceEEEEECC-
Q 016547           27 TIIHPGEVNRIRELPQN----TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCP-   97 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~----~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~~~-   97 (387)
                      .+.|.-+++.+.|.|+.    .++|||.+.  .+++|.+...+....        +...+    ..+-..++++..|+. 
T Consensus        92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~--------~~~~L~~~kns~~~aPlTSFDWne~  161 (364)
T KOG0290|consen   92 NFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVE--------LQSVLNNNKNSEFCAPLTSFDWNEV  161 (364)
T ss_pred             CCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCcee--------hhhhhccCcccccCCcccccccccC
Confidence            37899999999999943    367888653  799999986432211        11111    222234789999987 


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      +.+++.++|-|-+..|||++++..                                     +.....+-.|..+|..++|
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~-------------------------------------~~vkTQLIAHDKEV~DIaf  204 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVS-------------------------------------GTVKTQLIAHDKEVYDIAF  204 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccc-------------------------------------cceeeEEEecCcceeEEEe
Confidence            677899999999999999987511                                     1122556789999999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-CCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCc
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~  255 (387)
                      ...+.+.|++.+.||.++++|++..+...+...... ..+...++|++.+.+++|+-..| ..|.+.|+|.+     ..+
T Consensus       205 ~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----~tp  279 (364)
T KOG0290|consen  205 LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----CTP  279 (364)
T ss_pred             ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----Ccc
Confidence            998888999999999999999998774333222222 56888999999899999987776 57999999986     789


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +..+++|.+.|+.++|.|.....++++++|..+.+||+........       ..+  +.... -.+.|+.+.|++..+-
T Consensus       280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-------~dP--ilay~-a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-------EDP--ILAYT-AGGEVNQIQWSSSQPD  349 (364)
T ss_pred             eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-------CCc--hhhhh-ccceeeeeeecccCCC
Confidence            9999999999999999998887889999999999999987543111       111  11122 4568999999976655


Q ss_pred             EEEEec
Q 016547          336 TVVSVS  341 (387)
Q Consensus       336 l~~s~s  341 (387)
                      -++.|.
T Consensus       350 wiai~~  355 (364)
T KOG0290|consen  350 WIAICF  355 (364)
T ss_pred             EEEEEe
Confidence            554443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.3e-25  Score=182.94  Aligned_cols=240  Identities=19%  Similarity=0.362  Sum_probs=196.3

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -..-|+++..+| +++-|++|+.-.++.|||+.....          +....+..-.- ...+++.+||.+...+|..||
T Consensus       464 rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTp----------rikaeltssap-aCyALa~spDakvcFsccsdG  531 (705)
T KOG0639|consen  464 RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTP----------RIKAELTSSAP-ACYALAISPDAKVCFSCCSDG  531 (705)
T ss_pred             cccceeeeEecC-CCceEEeccccceeeeeeccCCCc----------chhhhcCCcch-hhhhhhcCCccceeeeeccCC
Confidence            345688888899 899999999999999999987721          12222222222 457899999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.|||+.+...                                        +..+.+|++.+.||..+++| ..|-+|+
T Consensus       532 nI~vwDLhnq~~----------------------------------------VrqfqGhtDGascIdis~dG-tklWTGG  570 (705)
T KOG0639|consen  532 NIAVWDLHNQTL----------------------------------------VRQFQGHTDGASCIDISKDG-TKLWTGG  570 (705)
T ss_pred             cEEEEEccccee----------------------------------------eecccCCCCCceeEEecCCC-ceeecCC
Confidence            999999986433                                        37789999999999999999 8899999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  269 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (387)
                      -|++|+.||++++.+...   ....+.|.++.++| .+.++++|-.++.+-+....       +.....+..|++.|.++
T Consensus       571 lDntvRcWDlregrqlqq---hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~s-------kp~kyqlhlheScVLSl  639 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTS-------KPEKYQLHLHESCVLSL  639 (705)
T ss_pred             Cccceeehhhhhhhhhhh---hhhhhhheecccCC-CccceeeecccCcEEEEecC-------CccceeecccccEEEEE
Confidence            999999999999884322   23457899999999 99999999999999888776       45566777799999999


Q ss_pred             EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547          270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  349 (387)
Q Consensus       270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~  349 (387)
                      .|.+.|++ |++.+.|..+..|.+.-+..               ++.. .-.+.|.++..+.|+++++        ||+.
T Consensus       640 KFa~cGkw-fvStGkDnlLnawrtPyGas---------------iFqs-kE~SsVlsCDIS~ddkyIV--------TGSG  694 (705)
T KOG0639|consen  640 KFAYCGKW-FVSTGKDNLLNAWRTPYGAS---------------IFQS-KESSSVLSCDISFDDKYIV--------TGSG  694 (705)
T ss_pred             EecccCce-eeecCchhhhhhccCccccc---------------eeec-cccCcceeeeeccCceEEE--------ecCC
Confidence            99999996 67999999999999887532               3332 2356899999999999888        8888


Q ss_pred             CceEEEEec
Q 016547          350 GGTLQIWRM  358 (387)
Q Consensus       350 dg~i~iw~~  358 (387)
                      |....||.+
T Consensus       695 dkkATVYeV  703 (705)
T KOG0639|consen  695 DKKATVYEV  703 (705)
T ss_pred             CcceEEEEE
Confidence            898888875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.9e-23  Score=170.35  Aligned_cols=270  Identities=21%  Similarity=0.354  Sum_probs=194.9

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      +.-|.|++|.+ +++ ++||.++|.|.||+..+.            +.......|.+ .|.+++...+|..|- |+.|+.
T Consensus       246 kk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~------------~~~k~~~aH~g-gv~~L~~lr~GtllS-GgKDRk  309 (626)
T KOG2106|consen  246 KKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN------------RISKQVHAHDG-GVFSLCMLRDGTLLS-GGKDRK  309 (626)
T ss_pred             ceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc------------eEEeEeeecCC-ceEEEEEecCccEee-cCccce
Confidence            47799999999 665 779999999999999777            55555558988 589999999997555 999999


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCC------CCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGD------GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |..|| .+.+......     .+...+.+.....+..+      .+..+....+........+|.+....++.+|+. .+
T Consensus       310 i~~Wd-~~y~k~r~~e-----lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q  382 (626)
T KOG2106|consen  310 IILWD-DNYRKLRETE-----LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQ  382 (626)
T ss_pred             EEecc-cccccccccc-----CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hh
Confidence            99999 2221111111     11111111111111111      011111112223345567899999999999998 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++++.|+.+++|+  ..+   .........+..|+.|+| .+ .++.|+..|...+.|.++      ...+..-. ...
T Consensus       383 ~~T~gqdk~v~lW~--~~k---~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~------~~lv~~~~-d~~  448 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWN--DHK---LEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET------QDLVTIHT-DNE  448 (626)
T ss_pred             eeeccCcceEEEcc--CCc---eeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEeccc------ceeEEEEe-cCC
Confidence            99999999999999  222   222233567889999999 77 999999999999999997      44444444 488


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      ++++++|+|+|.+ ||.|+.|+.|+||-+...+..+.             ..-..+..+|+.+.|++|++++.       
T Consensus       449 ~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~-------------r~~k~~gs~ithLDwS~Ds~~~~-------  507 (626)
T KOG2106|consen  449 QLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYS-------------RVGKCSGSPITHLDWSSDSQFLV-------  507 (626)
T ss_pred             ceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEE-------------EeeeecCceeEEeeecCCCceEE-------
Confidence            9999999999995 78999999999999998655432             22233448999999999999988       


Q ss_pred             CCCCCCceEEEEecC
Q 016547          345 DSTGGGGTLQIWRMS  359 (387)
Q Consensus       345 ~tg~~dg~i~iw~~~  359 (387)
                       +-+.|-.|..|...
T Consensus       508 -~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  508 -SNSGDYEILYWKPS  521 (626)
T ss_pred             -eccCceEEEEEccc
Confidence             77777899999443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=9.1e-24  Score=177.63  Aligned_cols=253  Identities=11%  Similarity=0.131  Sum_probs=176.7

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ++++++++.|+.|++||+.++            +....+..+..  +.+++|+|+++.+ ++++.++.|++||+.++...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~------------~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~   66 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL------------EVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI   66 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC------------ceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            357889999999999999887            56667776654  5689999999976 56778899999998754321


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  202 (387)
                                                              ..+..+. .+..+.|+|++..++++++.++.+++||+++.
T Consensus        67 ----------------------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~  105 (300)
T TIGR03866        67 ----------------------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR  105 (300)
T ss_pred             ----------------------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence                                                    1122222 24578899998545566677899999999876


Q ss_pred             CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547          203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                      +  .+..+. +...+.+++|+| ++.++++++.++ .+.+||.++      .+.+..+. ....+.+++|+|+++.++++
T Consensus       106 ~--~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~  174 (300)
T TIGR03866       106 K--VLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVS  174 (300)
T ss_pred             e--EEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEE
Confidence            5  344443 334578899999 999999988775 567789876      55544443 23345789999999987667


Q ss_pred             ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-ccC--CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +..++.|++||+.+.......           .... ..+  ......++|+|++++++++.+       .++.|.+||+
T Consensus       175 ~~~~~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-------~~~~i~v~d~  236 (300)
T TIGR03866       175 SEIGGTVSVIDVATRKVIKKI-----------TFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-------PANRVAVVDA  236 (300)
T ss_pred             cCCCCEEEEEEcCcceeeeee-----------eecccccccccCCccceEECCCCCEEEEEcC-------CCCeEEEEEC
Confidence            777999999999875321110           0000 001  113457889999998776433       3478999999


Q ss_pred             CCCcccccchhhhhhhccCceEEEeeecC
Q 016547          359 SDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .      +++.+..+. +...+.+++|+|
T Consensus       237 ~------~~~~~~~~~-~~~~~~~~~~~~  258 (300)
T TIGR03866       237 K------TYEVLDYLL-VGQRVWQLAFTP  258 (300)
T ss_pred             C------CCcEEEEEE-eCCCcceEEECC
Confidence            8      555554442 445788888887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.6e-26  Score=179.38  Aligned_cols=266  Identities=18%  Similarity=0.272  Sum_probs=169.6

Q ss_pred             CeEEEeccCCCceEEEEECCCC-CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      .+..+.+|.+ .|.|++=+|.. ..+++|+.||.|++||+.+..+...+........+-............+..+..|..
T Consensus        58 Fv~~L~gHrd-GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   58 FVGSLDGHRD-GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             chhhcccccc-ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence            4567899998 58999999977 689999999999999998765543333222111110000000000111111222221


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      .. .+..++.+ ...+..+.-+..+ ..++|++.  .|.|||.....  .+..+.-....|.++.|+|.....|++|..|
T Consensus       137 ~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  137 DG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDN--PVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             cC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCC--ccceeecCCCceeEEecCCCcchheeeeccC
Confidence            11 12222222 1223333333333 34444443  25555554433  3344444556788999999777888999999


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  316 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  316 (387)
                      +.|.|||++.      ..++..+. ....-+.|+|+|.. +.|+++++|..++.||++....+              +..
T Consensus       210 rsIvLyD~R~------~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p--------------~~v  267 (433)
T KOG0268|consen  210 RSIVLYDLRQ------ASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP--------------LNV  267 (433)
T ss_pred             CceEEEeccc------CCccceee-eeccccceecCccc-cceeeccccccceehhhhhhccc--------------chh
Confidence            9999999999      77776654 23455789999944 56889999999999999987554              556


Q ss_pred             eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      +.+|.+.|.+++|+|.|+-++        +||.|.+|+||.++...   +.+...  ...-..|.+|.||
T Consensus       268 ~~dhvsAV~dVdfsptG~Efv--------sgsyDksIRIf~~~~~~---SRdiYh--tkRMq~V~~Vk~S  324 (433)
T KOG0268|consen  268 HKDHVSAVMDVDFSPTGQEFV--------SGSYDKSIRIFPVNHGH---SRDIYH--TKRMQHVFCVKYS  324 (433)
T ss_pred             hcccceeEEEeccCCCcchhc--------cccccceEEEeecCCCc---chhhhh--HhhhheeeEEEEe
Confidence            688999999999999999988        89999999999999421   111111  1123457777765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.2e-24  Score=164.28  Aligned_cols=249  Identities=15%  Similarity=0.288  Sum_probs=185.4

Q ss_pred             EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      -.+|.+ .|.++.|.+.|+++++|+.|++|+|||.++.                                    ..++..
T Consensus         9 ~s~h~D-lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~------------------------------------s~~W~~   51 (361)
T KOG2445|consen    9 DSGHKD-LIHDVSFDFYGRRMATCSSDQTVKIWDSTSD------------------------------------SGTWSC   51 (361)
T ss_pred             ccCCcc-eeeeeeecccCceeeeccCCCcEEEEeccCC------------------------------------CCceEE
Confidence            356776 7999999999999999999999999998542                                    234455


Q ss_pred             ceeecCCCCCeEEEEEc-cCCCeeEEEecCCCeEEEEEccCC-------CCceeEEeeccCCCeeEEEecCC-CCCeEEE
Q 016547          162 RGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVG-------TSPVIKVEKAHDADLHCVDWNPL-DDNLILT  232 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~  232 (387)
                      ....+.|.+.|..+.|. |.-++.+++++.|+++.||.-...       +......+....+.|+.++|.|. -|-.||+
T Consensus        52 Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~  131 (361)
T KOG2445|consen   52 TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA  131 (361)
T ss_pred             eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence            57788999999999995 454589999999999999975221       12234456667789999999993 3678999


Q ss_pred             eeCCCeEEEEEeccCCCCCCCCceEEec-------cccceEEEEEEcCCC--CeeEEEecCC-----CeEEEEeCCCCCc
Q 016547          233 GSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDK--SSVFGSSAED-----GLLNIWDYEKVGK  298 (387)
Q Consensus       233 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--~~ll~s~~~d-----~~i~vwd~~~~~~  298 (387)
                      ++.||.+|||+.-.+.+-.......+++       .+..+..|+.|+|..  +.+||.|+.+     +.+.||.......
T Consensus       132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r  211 (361)
T KOG2445|consen  132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR  211 (361)
T ss_pred             eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence            9999999999987654433355555555       456678899999752  2367788765     4799999877542


Q ss_pred             eeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC---eEEEEecCCCCCCCCCceEEEEecCCCc--------ccc--
Q 016547          299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLI--------YRP--  365 (387)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~s~s~d~~tg~~dg~i~iw~~~~~~--------~~~--  365 (387)
                      .           ...+..+.+|..+|++++|.|+-.   +++|       +++.|| |+||++....        ..+  
T Consensus       212 K-----------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lA-------vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~  272 (361)
T KOG2445|consen  212 K-----------WLKVAELPDHTDPIRDISWAPNIGRSYHLLA-------VATKDG-VRIFKVKVARSAIEEEEVLAPDL  272 (361)
T ss_pred             e-----------eeeehhcCCCCCcceeeeeccccCCceeeEE-------EeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence            2           234667789999999999999742   4555       455558 9999998421        111  


Q ss_pred             ----cchhhhhhhccCceEEEeeec
Q 016547          366 ----QDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       366 ----~~~~~~~~~~~~~~v~~~~f~  386 (387)
                          .-+.+.++..|.+.|+++.|.
T Consensus       273 ~~~l~v~~vs~~~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  273 MTDLPVEKVSELDDHNGEVWRVRWN  297 (361)
T ss_pred             ccccceEEeeeccCCCCceEEEEEe
Confidence                123456788999999999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=3.6e-24  Score=174.54  Aligned_cols=298  Identities=18%  Similarity=0.330  Sum_probs=203.7

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccc----------------------------ccCCCCCCCe
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----------------------------VLGATNSRPD   79 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~----------------------------~~~~~~~~~~   79 (387)
                      ..|.+.|.++.... +|.+| +|+.|+.|..||-.-.+....                            +.+..+....
T Consensus       284 ~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~  361 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT  361 (626)
T ss_pred             eecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence            38999999999887 77655 599999999999332221111                            1111122334


Q ss_pred             EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc-cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      ....+|.+ ....++.+|+...+++++.|+.+++|+-........ ..+.........+   ....+...+...+.+.++
T Consensus       362 ~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~  437 (626)
T KOG2106|consen  362 LTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDTET  437 (626)
T ss_pred             EEEEeccc-ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEeccc
Confidence            45677887 678999999999999999999999999222111111 1111111111111   222333444555555555


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  238 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  238 (387)
                      ...+..-.. .+++++++|+|+| .+|+.|+.|+.|++|-+........+.-..+.++|+.+.|++ +++++.+-+.|-.
T Consensus       438 ~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  438 QDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYE  514 (626)
T ss_pred             ceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceE
Confidence            444444444 8899999999999 899999999999999998766444444445669999999999 9999999999999


Q ss_pred             EEEEEeccCCCCCCCCceEEe---------------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547          239 VRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  303 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  303 (387)
                      |..|....-..   ...++.+               ..+...|..++-+.+.. ++|+|.+.|+|++|...-..      
T Consensus       515 iLyW~~~~~~~---~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~s------  584 (626)
T KOG2106|consen  515 ILYWKPSECKQ---ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCSS------  584 (626)
T ss_pred             EEEEccccCcc---cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccCC------
Confidence            99994433110   1111111               12334455555555555 78999999999999887532      


Q ss_pred             CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                            +......+.+|.+.|++++|.-+...++        +.+.|.+|..|++
T Consensus       585 ------~rA~~he~~ghs~~vt~V~Fl~~d~~li--------~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  585 ------PRAPSHEYGGHSSHVTNVAFLCKDSHLI--------STGKDTSIMQWRL  625 (626)
T ss_pred             ------CcccceeeccccceeEEEEEeeCCceEE--------ecCCCceEEEEEe
Confidence                  2234666789999999999999888777        5558899999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.93  E-value=1.7e-23  Score=159.17  Aligned_cols=299  Identities=16%  Similarity=0.186  Sum_probs=210.9

Q ss_pred             ceeeeeeecCCCcEEEEEecC--CCCcEEEEecC----CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE
Q 016547           21 FVKKHKTIIHPGEVNRIRELP--QNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA   94 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~--~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~   94 (387)
                      ..+....+.-.-++.++.|+.  ..+.+||.|+-    .+.|.|-.++....  ++      ..... ..|.- +++.+.
T Consensus        34 r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--e~------~~~a~-fd~~Y-P~tK~~  103 (364)
T KOG0290|consen   34 RRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--EL------VEDAN-FDHPY-PVTKLM  103 (364)
T ss_pred             ccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--ce------eccCC-CCCCC-CccceE
Confidence            444455556677889999983  45568888864    45677766653310  00      11111 34555 789999


Q ss_pred             ECCCCC-----EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           95 MCPTEP-----YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        95 ~~~~~~-----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      |.|+..     .|||++  ..+|+|.+...........                               .-....-..+.
T Consensus       104 wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~-------------------------------~L~~~kns~~~  150 (364)
T KOG0290|consen  104 WIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS-------------------------------VLNNNKNSEFC  150 (364)
T ss_pred             ecCCccccCcchhhccc--CeEEEEeccCcCCceehhh-------------------------------hhccCcccccC
Confidence            999763     466654  4899999874211100000                               00001123456


Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      .+++++.|+.-.++++.+++-|-+..|||++++. ......+..|...|..++|.....+.||+.+.||.+|+||+|...
T Consensus       151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            7899999999888999999999999999999873 224566779999999999998556899999999999999999843


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                      .   ...+.+-.....+...++|+++..+++|+-..| ..|.|.|++.+..              .+..+.+|.+.|+++
T Consensus       231 H---STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--------------pva~L~~H~a~VNgI  293 (364)
T KOG0290|consen  231 H---STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--------------PVARLRNHQASVNGI  293 (364)
T ss_pred             c---ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--------------ceehhhcCcccccce
Confidence            2   233333333356788999999887777776654 5699999998643              477889999999999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +|.|.....++       |+|.|..+.+||+..........++.... -.+.|+.+.|+|
T Consensus       294 aWaPhS~~hic-------taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  294 AWAPHSSSHIC-------TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             EecCCCCceee-------ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence            99999887777       55555999999999765544445555555 567888888875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.93  E-value=1.5e-23  Score=181.32  Aligned_cols=281  Identities=18%  Similarity=0.259  Sum_probs=203.0

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC--E
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y  101 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~--~  101 (387)
                      ....+.-..+|+|++|+|.++.++|.|..+|+|.+||+........      .........|.. ++..+.|..+..  -
T Consensus       235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------s~ls~~~~sh~~-~v~~vvW~~~~~~~~  307 (555)
T KOG1587|consen  235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------SGLSALEVSHSE-PVTAVVWLQNEHNTE  307 (555)
T ss_pred             ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC------cccccccccCCc-CeEEEEEeccCCCCc
Confidence            3445567899999999999999999999999999999998743210      012223445666 788999976544  4


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++++.||.|..|+++.-.........                            ........-......+++++|.+..
T Consensus       308 f~s~ssDG~i~~W~~~~l~~P~e~~~~----------------------------~~~~~~~~~~~~~~~~t~~~F~~~~  359 (555)
T KOG1587|consen  308 FFSLSSDGSICSWDTDMLSLPVEGLLL----------------------------ESKKHKGQQSSKAVGATSLKFEPTD  359 (555)
T ss_pred             eEEEecCCcEeeeeccccccchhhccc----------------------------ccccccccccccccceeeEeeccCC
Confidence            999999999999988753221111000                            0000000001223568999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCce------eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec-cCCCCCCCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPV------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR-NLTSNGVGS  254 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~  254 (387)
                      ++.|+.|+.+|.|.--+-...+...      ......|.++|+++.++|.....+++++ |.+++||... .      ..
T Consensus       360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~------~~  432 (555)
T KOG1587|consen  360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI------AS  432 (555)
T ss_pred             CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC------CC
Confidence            8999999999999874433222111      3345678899999999996556666665 9999999988 5      67


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      ++..+..+...+++++|||...-+|+++..||.|.+||+.....             ..+.+...+....+.+.|++.|+
T Consensus       433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~  499 (555)
T KOG1587|consen  433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGK  499 (555)
T ss_pred             cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCc
Confidence            88888888888999999999999999999999999999987432             22333333456677888999898


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecCCCcccccc
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD  367 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~  367 (387)
                      .++        +|...|++++|++......+.+
T Consensus       500 ~la--------vGd~~G~~~~~~l~~~l~~~~~  524 (555)
T KOG1587|consen  500 LLA--------VGDANGTTHILKLSESLAVPSP  524 (555)
T ss_pred             EEE--------EecCCCcEEEEEcCchhhccCc
Confidence            777        7888899999999755444444

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=6.4e-24  Score=161.29  Aligned_cols=263  Identities=18%  Similarity=0.326  Sum_probs=187.2

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecCC-------CeEEEEEcCCCcCccc
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKD-------KSVVLWSIQDHITSSA  124 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d-------~~i~vwd~~~~~~~~~  124 (387)
                      |++|.+.+++.....         -....+..|.+ .|..++-+|..+ .|+++..+       ..+.||.+.+..... 
T Consensus        39 dNqVhll~~d~e~s~---------l~skvf~h~ag-Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-  107 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSE---------LLSKVFFHHAG-EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-  107 (370)
T ss_pred             cceeEEEEecCccch---------hhhhhhhcCCc-ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-
Confidence            678888887765211         12233444554 799999999655 45555432       247899987543221 


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  203 (387)
                                                    ...+.+.+..+. .+-+.|.|+.|.|++ ..+++-. |..|.+|++....
T Consensus       108 ------------------------------~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess  155 (370)
T KOG1007|consen  108 ------------------------------NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESS  155 (370)
T ss_pred             ------------------------------ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCc
Confidence                                          111222333333 445689999999988 5566654 8899999998776


Q ss_pred             CceeE----EeeccCCCeeEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEEcCCCCe
Q 016547          204 SPVIK----VEKAHDADLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSS  277 (387)
Q Consensus       204 ~~~~~----~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  277 (387)
                      .....    ....+....++-+|+| .+++.+++ ..|+++..||+|+      .++...+ .+|...|..+.|+|+.++
T Consensus       156 ~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT------~~~~~sI~dAHgq~vrdlDfNpnkq~  228 (370)
T KOG1007|consen  156 KIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRT------MKKNNSIEDAHGQRVRDLDFNPNKQH  228 (370)
T ss_pred             chheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccc------hhhhcchhhhhcceeeeccCCCCceE
Confidence            31111    1123556778889999 46667666 4689999999998      4555554 478889999999999999


Q ss_pred             eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547          278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       278 ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      +|++|++||.|+|||.++...+              +..+.+|..+|.++.|+|....|++       |||.|..|.+|.
T Consensus       229 ~lvt~gDdgyvriWD~R~tk~p--------------v~el~~HsHWvW~VRfn~~hdqLiL-------s~~SDs~V~Lsc  287 (370)
T KOG1007|consen  229 ILVTCGDDGYVRIWDTRKTKFP--------------VQELPGHSHWVWAVRFNPEHDQLIL-------SGGSDSAVNLSC  287 (370)
T ss_pred             EEEEcCCCccEEEEeccCCCcc--------------ccccCCCceEEEEEEecCccceEEE-------ecCCCceeEEEe
Confidence            9999999999999999986543              6778999999999999999888887       666779999997


Q ss_pred             cCCCc-----------------------ccccchhhhhhhccCceEEEeeec
Q 016547          358 MSDLI-----------------------YRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       358 ~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      .....                       ..-....++++..|.+.|++++||
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            65332                       001223456788999999999997

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.8e-25  Score=181.45  Aligned_cols=279  Identities=15%  Similarity=0.244  Sum_probs=203.6

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+..|.+.|+.++|.| ....|++++.||++.+|+++.....    .....+++.++++|.+ +|.|+++.+++..+++|
T Consensus       289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s----~~~~~epi~tfraH~g-PVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKS----AEKDVEPILTFRAHEG-PVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCc----cccceeeeEEEecccC-ceEEEEecCCceEEEee
Confidence            6667999999999998 7778999999999999999543211    1223478999999998 89999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.||+|+.|++.........                              .........+.+|.+.|+.+++++.. ..|
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds------------------------------~dp~vl~~~l~Ghtdavw~l~~s~~~-~~L  411 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDS------------------------------YDPSVLSGTLLGHTDAVWLLALSSTK-DRL  411 (577)
T ss_pred             ccCceeeeeccCCCCCcccc------------------------------cCcchhccceeccccceeeeeecccc-cce
Confidence            99999999988622111000                              00112235678999999999999987 679


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc----
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----  261 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~----  261 (387)
                      ++++.||++++|+...... +........+...++.+-.......++...-+.-.++++..      ...+..+..    
T Consensus       412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev------~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV------VSDLLIFESSASP  484 (577)
T ss_pred             eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh------hhheeeccccCCC
Confidence            9999999999999876652 22222223344556666542223444433444444444444      333333321    


Q ss_pred             ---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          262 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       262 ---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                         ....+..+.++|.+.. ..++..|+.|+++|..++               .++.....|...++++++.|+|.+|+ 
T Consensus       485 ~~~~~~~in~vVs~~~~~~-~~~~hed~~Ir~~dn~~~---------------~~l~s~~a~~~svtslai~~ng~~l~-  547 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTADI-TFTAHEDRSIRFFDNKTG---------------KILHSMVAHKDSVTSLAIDPNGPYLM-  547 (577)
T ss_pred             cccccCccceEEecCCCCe-eEecccCCceeccccccc---------------ccchheeeccceecceeecCCCceEE-
Confidence               1234778899999885 559999999999999885               44666788999999999999999999 


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  378 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  378 (387)
                             +|+.||.+++|.+.      ...+..+...|..
T Consensus       548 -------s~s~d~sv~l~kld------~k~~~~es~~~r~  574 (577)
T KOG0642|consen  548 -------SGSHDGSVRLWKLD------VKTCVLESTAHRK  574 (577)
T ss_pred             -------eecCCceeehhhcc------chheeeccccccc
Confidence                   99999999999998      5666666666543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2e-24  Score=166.29  Aligned_cols=220  Identities=18%  Similarity=0.279  Sum_probs=164.8

Q ss_pred             eEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           79 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        79 ~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      ...+++|.+ .|++++|+.||++|++++.|++|++|++++......                                  
T Consensus        79 ~~~LKgH~~-~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH----------------------------------  123 (420)
T KOG2096|consen   79 VSVLKGHKK-EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH----------------------------------  123 (420)
T ss_pred             hhhhhccCC-ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh----------------------------------
Confidence            346889998 799999999999999999999999999986322110                                  


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC---ce-------eEEeeccCCCeeEEEecCCCCC
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---PV-------IKVEKAHDADLHCVDWNPLDDN  228 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~-------~~~~~~~~~~i~~~~~~~~~~~  228 (387)
                       +.++. .-.-+..+.+.|.||-..+++++-....+++|-+...+.   +.       ......|.-.+..+-... ++.
T Consensus       124 -r~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k  200 (420)
T KOG2096|consen  124 -RCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAK  200 (420)
T ss_pred             -hHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-Cce
Confidence             00010 011234678999999877778888888999998765331   10       112233555666677766 889


Q ss_pred             eEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547          229 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  308 (387)
Q Consensus       229 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  308 (387)
                      ++++++.|..|.+|+++       ++.+..+......-+..+.||+|++ +|+++.--.|++|.+--...-..       
T Consensus       201 ~imsas~dt~i~lw~lk-------Gq~L~~idtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~f-------  265 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-------GQLLQSIDTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTF-------  265 (420)
T ss_pred             EEEEecCCCcEEEEecC-------CceeeeeccccccccceeeCCCCcE-EEEecCCCCceEEEEEeccCcch-------
Confidence            99999999999999999       7888888877777788999999997 46777777899999754322111       


Q ss_pred             CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          309 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .....++.+.||...|+.++|+++...++        |.+.||+++|||.+
T Consensus       266 qev~rvf~LkGH~saV~~~aFsn~S~r~v--------tvSkDG~wriwdtd  308 (420)
T KOG2096|consen  266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAV--------TVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhhhhheeccchhheeeeeeCCCcceeE--------EEecCCcEEEeecc
Confidence            11134678899999999999999988876        66777999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=2e-24  Score=173.83  Aligned_cols=220  Identities=19%  Similarity=0.259  Sum_probs=176.8

Q ss_pred             CeEEEeccCCCceEEEEECCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  155 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (387)
                      .....+.+.. .|++++|+|..  +.+++|+.-|.|-+||+.+..                                   
T Consensus       178 ~~~v~kv~~~-Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-----------------------------------  221 (498)
T KOG4328|consen  178 ILNVAKVTDR-RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-----------------------------------  221 (498)
T ss_pred             ecceeEeccc-ceEEEEecccCcceEEEEccCCCcEEEEecCCCC-----------------------------------
Confidence            4445666766 79999999964  478899999999999996321                                   


Q ss_pred             CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                       +...-...+..|..+|.++.|+|.+...+++.+.||+|++-|++......+.........+..+.|+. +...++.+..
T Consensus       222 -~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~  299 (498)
T KOG4328|consen  222 -KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDN  299 (498)
T ss_pred             -CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeec
Confidence             11223366778999999999999988899999999999999999876444444444556677888888 7777777877


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      =|...+||+++.     +.....+.-|...|.+++++|..+++||+++.|++.+|||++.......           .+.
T Consensus       300 ~G~f~~iD~R~~-----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~l  363 (498)
T KOG4328|consen  300 VGNFNVIDLRTD-----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFL  363 (498)
T ss_pred             ccceEEEEeecC-----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cce
Confidence            789999999985     4456667778889999999999999999999999999999998644321           144


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....|...|.+..|||.+..|+        |.+.|+.|+|||..
T Consensus       364 st~~HrrsV~sAyFSPs~gtl~--------TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  364 STLPHRRSVNSAYFSPSGGTLL--------TTCQDNEIRVFDSS  399 (498)
T ss_pred             ecccccceeeeeEEcCCCCceE--------eeccCCceEEeecc
Confidence            5567999999999999999977        77778999999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.4e-24  Score=175.32  Aligned_cols=225  Identities=16%  Similarity=0.268  Sum_probs=184.9

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      .-.|++... ...++++|+..+.|+|||++..            .+.+.+.+|.+ .|+++.++....|||+++..|.|.
T Consensus        81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~k------------l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdii  146 (673)
T KOG4378|consen   81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRAK------------LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDII  146 (673)
T ss_pred             hHHHHhhhh-cceeeeccCcCceeeehhhHHH------------HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEE
Confidence            345555555 4579999999999999999976            67778999996 799999999999999999999999


Q ss_pred             EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      |..+.++.....+..                                       +....|.-+.|+|....+|.+++.+|
T Consensus       147 ih~~~t~~~tt~f~~---------------------------------------~sgqsvRll~ys~skr~lL~~asd~G  187 (673)
T KOG4378|consen  147 IHGTKTKQKTTTFTI---------------------------------------DSGQSVRLLRYSPSKRFLLSIASDKG  187 (673)
T ss_pred             EEecccCccccceec---------------------------------------CCCCeEEEeecccccceeeEeeccCC
Confidence            999987644322111                                       11345678999999878888999999


Q ss_pred             eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc
Q 016547          193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS  272 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (387)
                      .|.+||+.... +.......|..+...|+|+|.+..+|++.+.|..|.+||.+.      .+....+. .+.+...++|.
T Consensus       188 ~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~  259 (673)
T KOG4378|consen  188 AVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFS  259 (673)
T ss_pred             eEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeec
Confidence            99999997655 456667789999999999998889999999999999999997      45544444 46788999999


Q ss_pred             CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547          273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  333 (387)
Q Consensus       273 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  333 (387)
                      ++|.+ |+.|...|.|..||++....+              +..+..|...|++++|-|.-
T Consensus       260 ~~G~~-L~aG~s~G~~i~YD~R~~k~P--------------v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  260 ECGTY-LCAGNSKGELIAYDMRSTKAP--------------VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CCceE-EEeecCCceEEEEecccCCCC--------------ceEeeecccceeEEEeeecc
Confidence            99986 678999999999999986443              66678899999999998853

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=3.7e-24  Score=179.45  Aligned_cols=122  Identities=16%  Similarity=0.413  Sum_probs=103.7

Q ss_pred             CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC-CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547          216 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~  294 (387)
                      .|+.+.|+|.+...|+++++||.|++|.+..... +....+...+.+|...|+++.|+|--..+|++++.|.+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            3667889998999999999999999999986432 122456677889999999999999776788999999999999999


Q ss_pred             CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +.               .....+.+|.+.|.+++|+|+|+.++        |.+.||+|++|+-+.
T Consensus       709 ~~---------------~~~~~l~gHtdqIf~~AWSpdGr~~A--------tVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  709 NA---------------KLYSRLVGHTDQIFGIAWSPDGRRIA--------TVCKDGTLRVYEPRS  751 (1012)
T ss_pred             hh---------------hhhheeccCcCceeEEEECCCCccee--------eeecCceEEEeCCCC
Confidence            86               33556789999999999999999877        777789999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=174.20  Aligned_cols=312  Identities=14%  Similarity=0.169  Sum_probs=225.9

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-E
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l  102 (387)
                      ..+..++.+.|+++.-+| --+.+|.|..+|+|.|++++.+            +.+..++...+ .|+++.|.-||.. |
T Consensus       195 v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~d------------kil~sFk~d~g-~VtslSFrtDG~p~l  260 (910)
T KOG1539|consen  195 VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFD------------KILMSFKQDWG-RVTSLSFRTDGNPLL  260 (910)
T ss_pred             EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccC------------cEEEEEEcccc-ceeEEEeccCCCeeE
Confidence            345556889999999888 7789999999999999999999            77777876644 7999999999985 5


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCC-----CceeccCCCCCCCCCCCCCCCCC--CCceeecCCCCCeEEE
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS-----GSIIKQSPKPGDGNDKAADGPSV--GPRGIYNGHEDTVEDV  175 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~  175 (387)
                      ++|+..|.+.+||+++..................     ..+...........+.+.+...+  +.++.-.+|..+..++
T Consensus       261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i  340 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI  340 (910)
T ss_pred             EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence            6777779999999998755444332221111110     11111111112222223333333  4455667899999999


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccCCCC--------------------------ce-----------------------
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARVGTS--------------------------PV-----------------------  206 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~-----------------------  206 (387)
                      .|......++.+++.|++++.+++.....                          +.                       
T Consensus       341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~  420 (910)
T KOG1539|consen  341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG  420 (910)
T ss_pred             eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence            99855558899999998888776532100                          00                       


Q ss_pred             ---------------eEE-----eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe---cccc
Q 016547          207 ---------------IKV-----EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF---EGHS  263 (387)
Q Consensus       207 ---------------~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~  263 (387)
                                     ...     +......+++++.++ .|++.+.|+..|.|-+|++.+      +....++   ..|.
T Consensus       421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS------Gi~r~sf~~~~ah~  493 (910)
T KOG1539|consen  421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS------GIHRKSFGDSPAHK  493 (910)
T ss_pred             cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc------CeeecccccCcccc
Confidence                           000     011225678999999 999999999999999999998      7777777   5899


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      .+|++++...-++ ++++++.+|.+++||..+..               ++..+. -...++.+..+.....++      
T Consensus       494 ~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~---------------l~~~l~-l~~~~~~iv~hr~s~l~a------  550 (910)
T KOG1539|consen  494 GEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV---------------LKKSLR-LGSSITGIVYHRVSDLLA------  550 (910)
T ss_pred             CceeEEEecCCCc-eEEEccCcceEEEEecCCcc---------------eeeeec-cCCCcceeeeeehhhhhh------
Confidence            9999999988888 46799999999999998742               122221 234667777777666555      


Q ss_pred             CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                        .+-.|-.|+++|+.      +.+.++++.+|.+.|++++|||
T Consensus       551 --~~~ddf~I~vvD~~------t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  551 --IALDDFSIRVVDVV------TRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             --hhcCceeEEEEEch------hhhhhHHhhccccceeeeEeCC
Confidence              44555899999999      8999999999999999999998

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=163.35  Aligned_cols=251  Identities=18%  Similarity=0.300  Sum_probs=184.1

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ..+|++.+.|+|++||..++            +.+..+++|+. .++.+.|..  ....+.+|+.||+|++||++.....
T Consensus        41 ~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccch------------hhhheecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            57899999999999999998            77888999987 688999977  4667899999999999999864332


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC-CCeEEEEEccCCCeeEEEec----CCCeEEEE
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVG----DDSCLILW  197 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~----~dg~i~iw  197 (387)
                      .                                      ...+..+. .+..+++..-.+ +++++|.    .+-.|.+|
T Consensus       108 a--------------------------------------~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lw  148 (376)
T KOG1188|consen  108 A--------------------------------------RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLW  148 (376)
T ss_pred             h--------------------------------------heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEE
Confidence            1                                      12333443 456667766555 6677765    46779999


Q ss_pred             EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC-C
Q 016547          198 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-S  276 (387)
Q Consensus       198 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  276 (387)
                      |++..+++.......|...|++++|+|.+.++|++||.||.|.+||+......  ...+..+. |...|.++.|..++ +
T Consensus       149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee--DaL~~viN-~~sSI~~igw~~~~yk  225 (376)
T KOG1188|consen  149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE--DALLHVIN-HGSSIHLIGWLSKKYK  225 (376)
T ss_pred             EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch--hhHHHhhc-ccceeeeeeeecCCcc
Confidence            99998865556677899999999999999999999999999999999864221  22333343 77889999999887 2


Q ss_pred             eeEEEecCCCeEEEEeCCCCCceeccCCCCC----------------------------------------------CCC
Q 016547          277 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----------------------------------------------NYP  310 (387)
Q Consensus       277 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------------------------------------------~~~  310 (387)
                      .+ .+-+..+...+|+++.............                                              ...
T Consensus       226 rI-~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~  304 (376)
T KOG1188|consen  226 RI-MCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL  304 (376)
T ss_pred             eE-EEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccc
Confidence            24 4777889999999988664332221100                                              000


Q ss_pred             ceeeeeecc-CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          311 AGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       311 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+....+.+ |..-|.++.|...+..++        |||.||.+.+|...
T Consensus       305 ~~~~a~l~g~~~eiVR~i~~~~~~~~l~--------TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  305 LTEPAILQGGHEEIVRDILFDVKNDVLY--------TGGEDGLLQAWKVE  346 (376)
T ss_pred             cCccccccCCcHHHHHHHhhhcccceee--------ccCCCceEEEEecC
Confidence            011122333 555677777877777777        99999999999964

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=8.3e-23  Score=172.72  Aligned_cols=339  Identities=15%  Similarity=0.204  Sum_probs=222.9

Q ss_pred             eeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCc---EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE
Q 016547            4 WTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL   80 (387)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   80 (387)
                      |.+...+.-+++...   .....+.||.++|+|+.|.| ..+   ++++|+.|+.|.+|.++..          ....+.
T Consensus        30 fGa~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~-~s~~~a~~vsG~sD~~v~lW~l~~~----------~~~~i~   95 (764)
T KOG1063|consen   30 FGAGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLP-TSEIVAEMVSGDSDGRVILWKLRDE----------YLIKIY   95 (764)
T ss_pred             ecCCceEEEeCcccc---eeEEeccCCccceEEEEEcc-cccccceEEEccCCCcEEEEEEeeh----------heEEEE
Confidence            334444444444332   34556678999999999998 555   8999999999999999843          225566


Q ss_pred             EEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcC----ccccCCCc-----ccCCCCCCceeccCCCCCCCCC
Q 016547           81 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT----SSATDPAT-----AKSAGSSGSIIKQSPKPGDGND  151 (387)
Q Consensus        81 ~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  151 (387)
                      .+.+|..   .++++..........+.|+.+.+||.+....    ...+....     ..... .......+.+.....+
T Consensus        96 ~~~g~~~---~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v  171 (764)
T KOG1063|consen   96 TIQGHCK---ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVV  171 (764)
T ss_pred             eecCcce---eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEE
Confidence            7777664   4666654433333336899999999954431    01111100     00111 1222222223332222


Q ss_pred             CCCC--CCCCCCceeecCCCCCeEEEEEccCC--CeeEEEecCCCeEEEEEccCCCC----------------c---ee-
Q 016547          152 KAAD--GPSVGPRGIYNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS----------------P---VI-  207 (387)
Q Consensus       152 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----------------~---~~-  207 (387)
                      .++.  ..+......+.+|.+.|.+++|...+  ..+++++++|..|+||.+.-...                +   .. 
T Consensus       172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~  251 (764)
T KOG1063|consen  172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE  251 (764)
T ss_pred             EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence            2222  22556677889999999999998654  35889999999999998753320                0   01 


Q ss_pred             ---------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE---EeccccceEEEEEEcCCC
Q 016547          208 ---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN---KFEGHSAAVLCVQWSPDK  275 (387)
Q Consensus       208 ---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~  275 (387)
                               ..+.+|+..|+++.|+| .+..|++++.|.++.+|......  +......   ...+......+..|+|++
T Consensus       252 ~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~t--GiWv~~vRlGe~gg~a~GF~g~lw~~n~  328 (764)
T KOG1063|consen  252 EIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENT--GIWVDVVRLGEVGGSAGGFWGGLWSPNS  328 (764)
T ss_pred             eEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCcc--ceEEEEEEeecccccccceeeEEEcCCC
Confidence                     11348999999999999 89899999999999999876521  0111112   222334567889999999


Q ss_pred             CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547          276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  355 (387)
Q Consensus       276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i  355 (387)
                      ..+ ++-+..|..++|.......            ........||.+.|.+++|+|.|.+|+        |.|.|.+-|+
T Consensus       329 ~~i-i~~g~~Gg~hlWkt~d~~~------------w~~~~~iSGH~~~V~dv~W~psGeflL--------svs~DQTTRl  387 (764)
T KOG1063|consen  329 NVI-IAHGRTGGFHLWKTKDKTF------------WTQEPVISGHVDGVKDVDWDPSGEFLL--------SVSLDQTTRL  387 (764)
T ss_pred             CEE-EEecccCcEEEEeccCccc------------eeeccccccccccceeeeecCCCCEEE--------Eeccccceee
Confidence            864 5777899999998332111            122334579999999999999999998        7888899999


Q ss_pred             EecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          356 WRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       356 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      |---..+  .+-..+...+-|.-..++++|-
T Consensus       388 Fa~wg~q--~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  388 FARWGRQ--QEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             ecccccc--cceeeecccccccccceeeehc
Confidence            8655211  1244566677788888888764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=164.19  Aligned_cols=229  Identities=11%  Similarity=0.247  Sum_probs=186.3

Q ss_pred             CceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           88 NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        88 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      +.|+++.|+|....|++|+.||++++|.++....                                      ..++.+.-
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------~~lqS~~l  255 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------PKLQSIHL  255 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------------------hhheeeee
Confidence            3699999999999999999999999999975322                                      23344455


Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ...+|.+.+|.|+|...+++++....++.||+.+.+...+....++. ..+....+++ ++++|+..+..|.|.+....+
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT  334 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT  334 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh
Confidence            56789999999999658999999999999999988744444444444 3567888999 999999999999999999998


Q ss_pred             CCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--Ce
Q 016547          247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KV  324 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v  324 (387)
                            +..+.+++ -++.|..++|+.+++.|+++ +.+|.|.+||++...               ++..+.. .+  .-
T Consensus       335 ------~eli~s~K-ieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~---------------~~~rf~D-~G~v~g  390 (514)
T KOG2055|consen  335 ------KELITSFK-IEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNS---------------CLHRFVD-DGSVHG  390 (514)
T ss_pred             ------hhhhheee-eccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcc---------------eEEEEee-cCccce
Confidence                  88888888 57889999999999987654 558899999999852               2333222 22  23


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++++.++++.+++        +|+..|.|.|||.++.......+++..+..-...|++++|+|
T Consensus       391 ts~~~S~ng~ylA--------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  391 TSLCISLNGSYLA--------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH  445 (514)
T ss_pred             eeeeecCCCceEE--------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence            6777889999877        888889999999988777778899999999999999999987

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=164.63  Aligned_cols=280  Identities=16%  Similarity=0.261  Sum_probs=202.7

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      +....+|.+.|+++.|+. ++++||+|+.|..+++|+++......      ..+++.....|..+.|.|++|...++++.
T Consensus        49 qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~  121 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK------TPKPIGVMEHPHRSNIFSLEFDLENRFLY  121 (609)
T ss_pred             hhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc------CCCCceeccCccccceEEEEEccCCeeEe
Confidence            345668999999999999 79999999999999999987653222      22677777666655799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|..+++|...|+++.+.+....                                      -....+.|..+..+|.. +
T Consensus       122 SG~~~~~VI~HDiEt~qsi~V~~--------------------------------------~~~~~~~VY~m~~~P~D-N  162 (609)
T KOG4227|consen  122 SGERWGTVIKHDIETKQSIYVAN--------------------------------------ENNNRGDVYHMDQHPTD-N  162 (609)
T ss_pred             cCCCcceeEeeecccceeeeeec--------------------------------------ccCcccceeecccCCCC-c
Confidence            99999999999998754321111                                      11234589999999996 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEe-eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC-----------
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-----------  251 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-----------  251 (387)
                      .|++.+.++.|.+||.+....+....+ .........+.|+|....+|++.+..+-+.+||.+..+...           
T Consensus       163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~  242 (609)
T KOG4227|consen  163 TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ  242 (609)
T ss_pred             eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc
Confidence            999999999999999998764333232 33456788999999888999999999999999998753210           


Q ss_pred             ------------CCC---------ceE----------Eec-ccc-------ceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          252 ------------VGS---------PIN----------KFE-GHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       252 ------------~~~---------~~~----------~~~-~~~-------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                                  .+.         +..          .++ .|.       ..+.+++|..+..  +++|+.+-.|++|.
T Consensus       243 ~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  243 ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWK  320 (609)
T ss_pred             cchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEe
Confidence                        011         100          111 011       2355666765544  57999999999999


Q ss_pred             CCCCCceeccCC--C------CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          293 YEKVGKKVEQGP--R------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       293 ~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +...........  +      ......+.+..+.+|..-++.+.|+|....|+        +.|..+.++||.--
T Consensus       321 lP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~--------SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  321 LPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV--------SSGVENSFKLWSDH  387 (609)
T ss_pred             cCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe--------ccchhhheeccccc
Confidence            986544332111  1      11122345667899999999999999766554        66777999999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.92  E-value=7.6e-23  Score=153.51  Aligned_cols=289  Identities=13%  Similarity=0.186  Sum_probs=194.4

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      +.+|.+.|+++.|-. ++ +|.+|..-|.|++|++.+.            +....++++....|+.+.--|+ ..|.+-+
T Consensus        10 LRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~------------r~~~~~r~~g~~~it~lq~~p~-d~l~tqg   74 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTE------------RDLPLIRLFGRLFITNLQSIPN-DSLDTQG   74 (323)
T ss_pred             eccccchheehhhcc-ch-hhhcccccceEEEEEeecC------------ccchhhhhhccceeeceeecCC-cchhhcC
Confidence            348999999999876 44 4889999999999999998            6777788666668888988887 5688889


Q ss_pred             CCCeEEEEEcCCCcCccccCC---------CcccCCCCCC-ceeccCCCCCCCCCCCCCCCCCCCceee----cCCCCCe
Q 016547          107 KDKSVVLWSIQDHITSSATDP---------ATAKSAGSSG-SIIKQSPKPGDGNDKAADGPSVGPRGIY----NGHEDTV  172 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v  172 (387)
                      +|+.+.+|++...........         .......... ............ ....+......+...    .+..+.+
T Consensus        75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccCccceeEccCchhccccCce
Confidence            999999999986422211110         0000000000 011111111111 111111111111111    2345667


Q ss_pred             EEEEEccC-CC-eeEEEecCCCeEEEEEccCCCC--------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          173 EDVTFCPS-SA-QEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       173 ~~~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      .|..+.-+ +. -+++.|-++|.+.+||+.++..        +.......|..+|.++.+.+ .-+.=++|+.+..+..|
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceee
Confidence            77775322 22 3566788999999999998631        12334556899999999998 66666788888889999


Q ss_pred             EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547          243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  322 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (387)
                      ++......  .+...++.-....|..+..-||++ ++|+++.|++||||+.++.               +.+..+.-|..
T Consensus       233 Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa  294 (323)
T KOG0322|consen  233 SLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA  294 (323)
T ss_pred             eeccccCc--ccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------------Cchhhhhhhhc
Confidence            88753211  111222222345688999999999 7899999999999999986               34667788999


Q ss_pred             CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      .|++++|+|+-+.++        .++.|++|.+|++
T Consensus       295 gvn~vAfspd~~lmA--------aaskD~rISLWkL  322 (323)
T KOG0322|consen  295 GVNAVAFSPDCELMA--------AASKDARISLWKL  322 (323)
T ss_pred             ceeEEEeCCCCchhh--------hccCCceEEeeec
Confidence            999999999876555        6667799999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.5e-22  Score=171.53  Aligned_cols=223  Identities=19%  Similarity=0.298  Sum_probs=177.7

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      |...|.+++...   .+|++|+.+++|.+|.+..+            .....+.-.+- ++.+++++.+|++++.||.|-
T Consensus        55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~------------~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~  118 (933)
T KOG1274|consen   55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG------------EEDTILARFTL-PIRDLAVSGSGKMIAAGSDDT  118 (933)
T ss_pred             cCceeEEEeecc---cceEEeeccceEEEeeCCCC------------Cccceeeeeec-cceEEEEecCCcEEEeecCce
Confidence            788899998644   48999999999999999988            23323333333 688999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|++-++.+..                                        ....+++|.++|.++.|+|.+ ++|++.+
T Consensus       119 ~vK~~~~~D~s----------------------------------------~~~~lrgh~apVl~l~~~p~~-~fLAvss  157 (933)
T KOG1274|consen  119 AVKLLNLDDSS----------------------------------------QEKVLRGHDAPVLQLSYDPKG-NFLAVSS  157 (933)
T ss_pred             eEEEEeccccc----------------------------------------hheeecccCCceeeeeEcCCC-CEEEEEe
Confidence            99999987543                                        237789999999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCCceeEEee-------c-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547          190 DDSCLILWDARVGTSPVIKVEK-------A-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  260 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~-------~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-  260 (387)
                      -||.|++||+.++..  ...+.       . ....+..++|+| ++..|++...|+.|++|+...      +.....+. 
T Consensus       158 ~dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~  228 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------WELQFKLRD  228 (933)
T ss_pred             cCceEEEEEcccchh--hhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------ceeheeecc
Confidence            999999999998762  22111       1 134567899999 888888889999999999998      77766664 


Q ss_pred             -cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          261 -GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       261 -~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                       .+...+..++|+|+|+| ||+++.||.|.|||.++...                   ......|.+++|.|+.+.+-+
T Consensus       229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~~-------------------~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHER-------------------HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             cccccceEEEEEcCCCcE-EeeeccCCcEEEEecccchh-------------------ccccceeEEEecCCCCCeeEE
Confidence             34455999999999997 57999999999999997211                   223357899999998876543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=1.1e-21  Score=155.50  Aligned_cols=216  Identities=18%  Similarity=0.386  Sum_probs=171.6

Q ss_pred             EEEeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      -.+.||++ +|..++|+| +...||+||.|.+|.||++.......                                 .-
T Consensus        75 P~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------------------------------~l  120 (472)
T KOG0303|consen   75 PLVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------------------------------DL  120 (472)
T ss_pred             CCccCccc-cccccccCccCCceeecCCCCceEEEEECCCccccc---------------------------------Cc
Confidence            45789998 799999999 55679999999999999997643321                                 11


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  238 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  238 (387)
                      .+++..+.+|+..|--++|+|.-.+.|++++.|.+|.+||+.+++  .+..+. |...|.++.|+. +|.+|++.+.|..
T Consensus       121 tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDKk  196 (472)
T KOG0303|consen  121 TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKK  196 (472)
T ss_pred             ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccce
Confidence            256688999999999999999988999999999999999999998  455554 999999999999 9999999999999


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccce-EEEEEEcCCCCeeEEEec---CCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                      ||+||.++      ++.+.+-.+|.+. -..+.|-.++. ++.+|-   .+..+-+||-.+..++.            .+
T Consensus       197 vRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~------------~~  257 (472)
T KOG0303|consen  197 VRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPI------------AL  257 (472)
T ss_pred             eEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcc------------ee
Confidence            99999999      8888888888753 45667778887 554443   47789999988865542            23


Q ss_pred             eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..+.. +..|.---|.++...+.+       +|-.|+.||-|.+.+
T Consensus       258 ~elDt-SnGvl~PFyD~dt~ivYl-------~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  258 QELDT-SNGVLLPFYDPDTSIVYL-------CGKGDSSIRYFEITN  295 (472)
T ss_pred             EEecc-CCceEEeeecCCCCEEEE-------EecCCcceEEEEecC
Confidence            33333 345555557888777766       555679999999984

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=1.8e-21  Score=154.27  Aligned_cols=215  Identities=22%  Similarity=0.358  Sum_probs=168.4

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG  105 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~  105 (387)
                      ..||+++|..++|+|.+...+|+|+.|.+|.||++...-....+     ..++..|.+|.. .|-.++|+|. .+.|+++
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l-----tepvv~L~gH~r-rVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL-----TEPVVELYGHQR-RVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-----ccceEEEeecce-eEEEEeecccchhhHhhc
Confidence            35899999999999999999999999999999999876433322     268899999998 7999999996 4578899


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|.+|.+||+.++...                                        ..+. |.+.|.++.|+-+| .++
T Consensus       151 g~Dn~v~iWnv~tgeal----------------------------------------i~l~-hpd~i~S~sfn~dG-s~l  188 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEAL----------------------------------------ITLD-HPDMVYSMSFNRDG-SLL  188 (472)
T ss_pred             cCCceEEEEeccCCcee----------------------------------------eecC-CCCeEEEEEeccCC-cee
Confidence            99999999999876432                                        3333 99999999999999 889


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCC-CeeEEEecCCCCCeEEEee---CCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      ++.+.|..|++||.++++  .+..-.+|.+ ....+.|-. ++.++-+|.   .+..+-+||..+...   .-...++..
T Consensus       189 ~TtckDKkvRv~dpr~~~--~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~e---P~~~~elDt  262 (472)
T KOG0303|consen  189 CTTCKDKKVRVIDPRRGT--VVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEE---PIALQELDT  262 (472)
T ss_pred             eeecccceeEEEcCCCCc--EeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccC---cceeEEecc
Confidence            999999999999999998  4444456654 234455655 677665554   367899999887532   222334443


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                       +..|.---|.++...+..+|-.|+.|+-|.+...
T Consensus       263 -SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  263 -SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             -CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence             4456666788888888888989999999999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.5e-21  Score=161.00  Aligned_cols=256  Identities=16%  Similarity=0.195  Sum_probs=194.7

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      +.+.....+-.+.|.+++|.+ ++ .|.+.+.+|.|.-||+.+.            ++...+....+ +|++++.+|.+.
T Consensus        59 ~~~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~l------------k~~~~~d~~gg-~IWsiai~p~~~  123 (691)
T KOG2048|consen   59 FLEPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTL------------KQKYNIDSNGG-AIWSIAINPENT  123 (691)
T ss_pred             eeeEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEecccC------------ceeEEecCCCc-ceeEEEeCCccc
Confidence            444333334568899999995 44 5677788999999999999            67777776665 799999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .++.|+.||.+...+...+...                                      ....+...++.|.++.|.|+
T Consensus       124 ~l~IgcddGvl~~~s~~p~~I~--------------------------------------~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen  124 ILAIGCDDGVLYDFSIGPDKIT--------------------------------------YKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             eEEeecCCceEEEEecCCceEE--------------------------------------EEeecccccceEEEEEecCC
Confidence            9999999997777766543221                                      11344556789999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEE-----ee-ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKV-----EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      + ..+++|+.||.|++||..++....+..     .. ....-|.++.+-.  ...+++|...|.|.+||...      +.
T Consensus       166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~------gT  236 (691)
T KOG2048|consen  166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF------GT  236 (691)
T ss_pred             c-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC------cc
Confidence            9 779999999999999999887322111     11 1223456677664  67899999999999999999      99


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      .+.++..|.+.|.+++..+++.+++ +++.|+.|..|........           +........|...|.+++..++  
T Consensus       237 LiqS~~~h~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~-----------wv~~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  237 LIQSHSCHDADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSE-----------WVINSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             hhhhhhhhhcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccc-----------eeeeccccCCcccceeeeeecc--
Confidence            9999999999999999999988755 8888999988887764331           1123334678888999998876  


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecCC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .++        +||.|.++.+-....
T Consensus       303 ~l~--------sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  303 ALI--------SGGRDFTLAICSSRE  320 (691)
T ss_pred             eEE--------ecceeeEEEEccccc
Confidence            455        788888888876653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.7e-21  Score=148.14  Aligned_cols=245  Identities=16%  Similarity=0.272  Sum_probs=180.0

Q ss_pred             cCCCcEEEEEecC------CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--ceEEEEECCCCC
Q 016547           29 IHPGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEP  100 (387)
Q Consensus        29 ~h~~~v~~i~~~~------~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~~~~  100 (387)
                      ...+.|...+|-|      ++..++|+.+.+.-|.+||.-+++.+...          ....|.+.  .-.+++|+|||.
T Consensus       102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy----------~~ydh~de~taAhsL~Fs~DGe  171 (406)
T KOG2919|consen  102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY----------RAYDHQDEYTAAHSLQFSPDGE  171 (406)
T ss_pred             ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch----------hhhhhHHhhhhheeEEecCCCC
Confidence            3567777777763      37789999999999999999999433221          11112210  235899999999


Q ss_pred             EEEEecCCCeEEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          101 YVLSGGKDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      +|+.|- ...|+++|+.. +........                                 ...--.+..+-+.+++|+|
T Consensus       172 qlfaGy-krcirvFdt~RpGr~c~vy~t---------------------------------~~~~k~gq~giisc~a~sP  217 (406)
T KOG2919|consen  172 QLFAGY-KRCIRVFDTSRPGRDCPVYTT---------------------------------VTKGKFGQKGIISCFAFSP  217 (406)
T ss_pred             eEeecc-cceEEEeeccCCCCCCcchhh---------------------------------hhcccccccceeeeeeccC
Confidence            999875 68999999943 221111100                                 0011234467899999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCceEE
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      .....++.++....+-||.-..+.  .+..+.+|.+.|+.++|.+ +|+.|.+|+. |-.|..||+|..     ..++..
T Consensus       218 ~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~  289 (406)
T KOG2919|consen  218 MDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS-----RDPVYA  289 (406)
T ss_pred             CCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc-----cchhhh
Confidence            987899999999999998866665  5667779999999999999 9999999887 778999999974     677888


Q ss_pred             eccccc-eEEE--EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          259 FEGHSA-AVLC--VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       259 ~~~~~~-~i~~--~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +..|.. .-..  ....|+++ +||+|+.||.|++||+...+..              ...+..|...++.++++|--+.
T Consensus       290 L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~--------------~sv~~~~sd~vNgvslnP~mpi  354 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNE--------------VSVTGNYSDTVNGVSLNPIMPI  354 (406)
T ss_pred             hhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCc--------------ccccccccccccceecCcccce
Confidence            877765 3333  44568888 5789999999999999986542              3345678889999999998664


Q ss_pred             EEEEec
Q 016547          336 TVVSVS  341 (387)
Q Consensus       336 l~~s~s  341 (387)
                      + +++|
T Consensus       355 l-atss  359 (406)
T KOG2919|consen  355 L-ATSS  359 (406)
T ss_pred             e-eecc
Confidence            4 4443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=8e-22  Score=152.60  Aligned_cols=258  Identities=21%  Similarity=0.323  Sum_probs=186.5

Q ss_pred             ecCCCcEEEEEecCC---CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEE
Q 016547           28 IIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVL  103 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~  103 (387)
                      ..|...-..++|+-+   ...++|.|+.-|.|+|.|+.++            +....+.+|.. .|+.|.+.|+. ++++
T Consensus        86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~-sINeik~~p~~~qlvl  152 (385)
T KOG1034|consen   86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGG-SINEIKFHPDRPQLVL  152 (385)
T ss_pred             CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh------------hhccceeccCc-cchhhhcCCCCCcEEE
Confidence            346667777777642   3468899999999999999998            77888999998 69999999965 6899


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      ++|.|.+|++|++++..+...+                                     .-+.+|.+.|.++.|++++ .
T Consensus       153 s~SkD~svRlwnI~~~~Cv~Vf-------------------------------------GG~egHrdeVLSvD~~~~g-d  194 (385)
T KOG1034|consen  153 SASKDHSVRLWNIQTDVCVAVF-------------------------------------GGVEGHRDEVLSVDFSLDG-D  194 (385)
T ss_pred             EecCCceEEEEeccCCeEEEEe-------------------------------------cccccccCcEEEEEEcCCC-C
Confidence            9999999999999987654333                                     2246899999999999999 6


Q ss_pred             eEEEecCCCeEEEEEccCCCC--------------------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          184 EFCSVGDDSCLILWDARVGTS--------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                      .+++++.|..+++|++...+.                          +.......|...|-|+.|   -++++++-+-++
T Consensus       195 ~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscen  271 (385)
T KOG1034|consen  195 RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCEN  271 (385)
T ss_pred             eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---HhhheeecccCc
Confidence            899999999999999984321                          000012235666667776   468999999999


Q ss_pred             eEEEEEeccCCC--------CCCCCceEEeccccceEEEE--EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547          238 SVRMFDRRNLTS--------NGVGSPINKFEGHSAAVLCV--QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       238 ~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~i~~~--~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  307 (387)
                      .|..|.......        ......+.++......|.-+  +|.|-++ +||.|.+.|.|.+||++....+..      
T Consensus       272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~~------  344 (385)
T KOG1034|consen  272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPKC------  344 (385)
T ss_pred             eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCccC------
Confidence            999998732211        01122334444444555555  4556666 578999999999999998543211      


Q ss_pred             CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                           ...........|...+|+.|+..|++.|        .|++|.-||..
T Consensus       345 -----ttl~~s~~~~tVRQ~sfS~dgs~lv~vc--------dd~~Vwrwdrv  383 (385)
T KOG1034|consen  345 -----TTLTHSKSGSTVRQTSFSRDGSILVLVC--------DDGTVWRWDRV  383 (385)
T ss_pred             -----ceEEeccccceeeeeeecccCcEEEEEe--------CCCcEEEEEee
Confidence                 1112223345899999999999887544        34899888854

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=2.9e-21  Score=149.53  Aligned_cols=271  Identities=15%  Similarity=0.247  Sum_probs=190.3

Q ss_pred             eeeeecCCCcEEEEEecC----CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE--eccCCCceEEEEECC
Q 016547           24 KHKTIIHPGEVNRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCP   97 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~v~~~~~~~   97 (387)
                      ......|+.+|..++|++    +....+||.+.+ .+.+|+....-..         +.++..  ..|.. ..+.++|+-
T Consensus        31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i---------r~lq~y~D~d~~E-sfytcsw~y   99 (385)
T KOG1034|consen   31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI---------RLLQSYADEDHDE-SFYTCSWSY   99 (385)
T ss_pred             eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce---------eeeeeccCCCCCc-ceEEEEEEe
Confidence            334456999999999986    456788887765 6889987665200         111111  12443 456778865


Q ss_pred             C----CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547           98 T----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  173 (387)
Q Consensus        98 ~----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  173 (387)
                      +    ..++|.++.-|.|+|.|+.+++.                                        ...+.+|...|+
T Consensus       100 d~~~~~p~la~~G~~GvIrVid~~~~~~----------------------------------------~~~~~ghG~sIN  139 (385)
T KOG1034|consen  100 DSNTGNPFLAAGGYLGVIRVIDVVSGQC----------------------------------------SKNYRGHGGSIN  139 (385)
T ss_pred             cCCCCCeeEEeecceeEEEEEecchhhh----------------------------------------ccceeccCccch
Confidence            3    45889999999999999986543                                        366789999999


Q ss_pred             EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC-
Q 016547          174 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS-  249 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-  249 (387)
                      .+.++|+.++++++++.|..|++|++++..  ++..+   .+|...|.++.|++ ++.++++++.|..|.+|++...+- 
T Consensus       140 eik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~  216 (385)
T KOG1034|consen  140 EIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFK  216 (385)
T ss_pred             hhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHh
Confidence            999999999999999999999999999988  55544   57999999999999 999999999999999999984210 


Q ss_pred             -----------CCCC-------CceE---EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547          250 -----------NGVG-------SPIN---KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  308 (387)
Q Consensus       250 -----------~~~~-------~~~~---~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  308 (387)
                                 ++..       ..+.   +-..|...|.|+.|--  .+ +.+-+-++.|..|..-..++...... .+.
T Consensus       217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~-ilSkscenaI~~w~pgkl~e~~~~vk-p~e  292 (385)
T KOG1034|consen  217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DF-ILSKSCENAIVCWKPGKLEESIHNVK-PPE  292 (385)
T ss_pred             hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hh-eeecccCceEEEEecchhhhhhhccC-CCc
Confidence                       0000       0111   2234677788888765  43 45888899999998844333322111 111


Q ss_pred             CCceeeeeeccCCCCeeEE--EEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          309 YPAGLFFQHAGHRDKVVDF--HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .....+..+.-....|.-+  +|.|-++.|+        .|...|.|.+||++.
T Consensus       293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la--------~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLA--------LGNQSGKVYVWDLDN  338 (385)
T ss_pred             cceeeeeEeccCccceEEEEEeecHHHHHHh--------hccCCCcEEEEECCC
Confidence            2223344444445555555  4566677777        788889999999994

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=3.3e-21  Score=153.25  Aligned_cols=184  Identities=21%  Similarity=0.343  Sum_probs=141.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      ...+|..+.|.+...+.+|||+.|..|+||.+...+....-   ........+..|+. .|+++.|+|+|..|++|+.+|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~-aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTR-AVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcc-eeEEEEEcCCcCeeeecCCCc
Confidence            35789999999966669999999999999999877433210   11244567888887 799999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.+|....-...   ..                    +. ....+.+.+.....+.+|...|..++|+|++ +++++++
T Consensus        88 ~v~lWk~~~~~~~---~~--------------------d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s  142 (434)
T KOG1009|consen   88 EVFLWKQGDVRIF---DA--------------------DT-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGS  142 (434)
T ss_pred             eEEEEEecCcCCc---cc--------------------cc-hhhhCccceEEEEEecccccchhhhhccCCC-ceeeeee
Confidence            9999987641000   00                    00 0011122344456778899999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      .|..+++||+..+.  ....+..|...+..++|.| -++++++-+.|...+.+++.
T Consensus       143 ~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeee
Confidence            99999999999998  6777888999999999999 78888888777765555543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.4e-21  Score=162.75  Aligned_cols=233  Identities=16%  Similarity=0.249  Sum_probs=179.2

Q ss_pred             CCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547           76 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  155 (387)
Q Consensus        76 ~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (387)
                      ..+-..+.+|++ .|.+|...|.|.+|++|+.||+|++|.+.++.++....                             
T Consensus       390 t~~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-----------------------------  439 (733)
T KOG0650|consen  390 TRCALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-----------------------------  439 (733)
T ss_pred             ceeeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-----------------------------
Confidence            356678999998 79999999999999999999999999999876643321                             


Q ss_pred             CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC--------------------------------
Q 016547          156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT--------------------------------  203 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------------------------  203 (387)
                                  ..+.|.|++|+|.+...++..+....+.+-+..-+.                                
T Consensus       440 ------------~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~  507 (733)
T KOG0650|consen  440 ------------FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASL  507 (733)
T ss_pred             ------------ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhh
Confidence                        245799999999875555555555555555432210                                


Q ss_pred             -C--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe
Q 016547          204 -S--PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS  277 (387)
Q Consensus       204 -~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  277 (387)
                       .  .-+.....|...|+.|.|+. .|.+|++...+   ..|.|+++..      .....-|+...+.|.++.|+|...+
T Consensus       508 ~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK------~~sQ~PF~kskG~vq~v~FHPs~p~  580 (733)
T KOG0650|consen  508 DELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSK------RKSQSPFRKSKGLVQRVKFHPSKPY  580 (733)
T ss_pred             hhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEeccc------ccccCchhhcCCceeEEEecCCCce
Confidence             0  01223345788999999999 99999998775   4688999886      4444445445678999999999998


Q ss_pred             eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547          278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       278 ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      +|++.  ...|+|||+...               .++..+......|..|+.+|.|..++        .|+.|+.+..+|
T Consensus       581 lfVaT--q~~vRiYdL~kq---------------elvKkL~tg~kwiS~msihp~GDnli--------~gs~d~k~~WfD  635 (733)
T KOG0650|consen  581 LFVAT--QRSVRIYDLSKQ---------------ELVKKLLTGSKWISSMSIHPNGDNLI--------LGSYDKKMCWFD  635 (733)
T ss_pred             EEEEe--ccceEEEehhHH---------------HHHHHHhcCCeeeeeeeecCCCCeEE--------EecCCCeeEEEE
Confidence            77443  567999999873               23444555667899999999999999        788889999999


Q ss_pred             cCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          358 MSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++-     +.++.+++.-|...|++|+||+
T Consensus       636 ldl-----sskPyk~lr~H~~avr~Va~H~  660 (733)
T KOG0650|consen  636 LDL-----SSKPYKTLRLHEKAVRSVAFHK  660 (733)
T ss_pred             ccc-----CcchhHHhhhhhhhhhhhhhcc
Confidence            994     5678999999999999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-20  Score=138.98  Aligned_cols=254  Identities=17%  Similarity=0.226  Sum_probs=176.3

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ..|.+-+++| .+++|+.|+.+|+|.+..+........  .+....++...++|.+ +|+.++|.  ..+|++|+ ||.|
T Consensus        11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv~eqahdg-piy~~~f~--d~~Lls~g-dG~V   83 (325)
T KOG0649|consen   11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIVPEQAHDG-PIYYLAFH--DDFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhcccc--CCCCCcceeeccccCC-Ceeeeeee--hhheeecc-CceE
Confidence            3466677888 889999999999999999876532222  1122245556688987 89999997  56788887 6999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      +-|..++........+                         +|....  +.+.-...--.|+++-..|.. +-++.++.|
T Consensus        84 ~gw~W~E~~es~~~K~-------------------------lwe~~~--P~~~~~~evPeINam~ldP~e-nSi~~AgGD  135 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKR-------------------------LWEVKI--PMQVDAVEVPEINAMWLDPSE-NSILFAGGD  135 (325)
T ss_pred             EEeeehhhhhhccchh-------------------------hhhhcC--ccccCcccCCccceeEeccCC-CcEEEecCC
Confidence            9998875433211111                         000000  001001112468899999887 556666689


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---------c
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---------H  262 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---------~  262 (387)
                      +.++-||+++++  ..+.+.+|...+.++.-.. ....+++|+.||++|+||.++      .+.+..+..         |
T Consensus       136 ~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie~yk~~~~lRp~  206 (325)
T KOG0649|consen  136 GVIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIEPYKNPNLLRPD  206 (325)
T ss_pred             eEEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEeccccChhhcCcc
Confidence            999999999999  7889999999999999865 677899999999999999999      777766642         2


Q ss_pred             -cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          263 -SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       263 -~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                       ...|.+++-+.+  + +++| ....+.+|.++....             .+++.+.+   .+..+.|..+  .++    
T Consensus       207 ~g~wigala~~ed--W-lvCG-gGp~lslwhLrsse~-------------t~vfpipa---~v~~v~F~~d--~vl----  260 (325)
T KOG0649|consen  207 WGKWIGALAVNED--W-LVCG-GGPKLSLWHLRSSES-------------TCVFPIPA---RVHLVDFVDD--CVL----  260 (325)
T ss_pred             cCceeEEEeccCc--e-EEec-CCCceeEEeccCCCc-------------eEEEeccc---ceeEeeeecc--eEE----
Confidence             235677776554  4 4344 467799999998422             33444444   4566677643  344    


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                          ++|..+.|.-|.++
T Consensus       261 ----~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  261 ----IGGEGNHVQSYTLN  274 (325)
T ss_pred             ----Eeccccceeeeeec
Confidence                56666889999887

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.1e-21  Score=148.65  Aligned_cols=200  Identities=12%  Similarity=0.196  Sum_probs=152.8

Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      .|+.|++.|.+||+|..||.|.+||+.+..                                        .-..+.+|..
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~~   66 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHVR   66 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhcccc
Confidence            699999999999999999999999997632                                        3366789999


Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      +|.+++|+++| ++|++++.|..|.+||+..+.  +...+ ...++|....|+|.+.+..++.-.+..-.+.++..+.  
T Consensus        67 pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs--~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--  140 (405)
T KOG1273|consen   67 PITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGS--PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--  140 (405)
T ss_pred             ceeEEEecCCC-CEeeeecCCceeEEEeccCCC--ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--
Confidence            99999999999 899999999999999999998  44444 3578999999999766777666666666666665411  


Q ss_pred             CCCCceEEecc---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC-CCeeE
Q 016547          251 GVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVD  326 (387)
Q Consensus       251 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  326 (387)
                         ..+.....   .+....+..|.+.|++++ +|...|.+.++|..+.               .++..+.-.. ..|..
T Consensus       141 ---h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsKGkllv~~a~t~---------------e~vas~rits~~~IK~  201 (405)
T KOG1273|consen  141 ---HSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSKGKLLVYDAETL---------------ECVASFRITSVQAIKQ  201 (405)
T ss_pred             ---eeeccCCCccccccccccccccCCCCEEE-EecCcceEEEEecchh---------------eeeeeeeechheeeeE
Confidence               11111110   111223446889999865 8999999999999985               3444444444 68899


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  363 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~  363 (387)
                      +.++..|++++        .-..|..||.|++.+...
T Consensus       202 I~~s~~g~~li--------iNtsDRvIR~ye~~di~~  230 (405)
T KOG1273|consen  202 IIVSRKGRFLI--------INTSDRVIRTYEISDIDD  230 (405)
T ss_pred             EEEeccCcEEE--------EecCCceEEEEehhhhcc
Confidence            99999999999        555668999999986543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=8.6e-21  Score=160.43  Aligned_cols=273  Identities=12%  Similarity=0.162  Sum_probs=191.5

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      .|+.++|-| +|..|+.+.. ..+.+||...+            ..+..+++|.+ .|+|++|+.||+.+++|+.|+.|.
T Consensus        14 ci~d~afkP-DGsqL~lAAg-~rlliyD~ndG------------~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKP-DGTQLILAAG-SRLLVYDTSDG------------TLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVI   78 (1081)
T ss_pred             chheeEECC-CCceEEEecC-CEEEEEeCCCc------------ccccccccccc-eEEEEEEccCCceeccCCCceeEE
Confidence            899999999 5555555443 47999999999            78889999998 799999999999999999999999


Q ss_pred             EEEcCCCcCccc--cCC-CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          113 LWSIQDHITSSA--TDP-ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       113 vwd~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|+-+-......  .+. +..........+..++    .....+|...+... .. ......+.+.+|..|| ++++.|-
T Consensus        79 ~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCs----LsdFglWS~~qK~V-~K-~kss~R~~~CsWtnDG-qylalG~  151 (1081)
T KOG1538|consen   79 IWTSKLEGILKYSHNDAIQCMSFNPITHQLASCS----LSDFGLWSPEQKSV-SK-HKSSSRIICCSWTNDG-QYLALGM  151 (1081)
T ss_pred             EecccccceeeeccCCeeeEeecCchHHHhhhcc----hhhccccChhhhhH-Hh-hhhheeEEEeeecCCC-cEEEEec
Confidence            998653211100  000 0000000000000000    01112222222111 11 1124568899999999 8999999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC----CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD----DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      .+|+|.+-+....+...+....+..++|.+++|+|..    ...+++.....++.+|.+.       ++.+..-+..+..
T Consensus       152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r~L~Fd  224 (1081)
T KOG1538|consen  152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDRALNFD  224 (1081)
T ss_pred             cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccccCCCC
Confidence            9999999976555533344444577899999999943    2578888888888888887       5555544445556


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      ..|+.+.++|.+++ .|+.|+.+++|--+.                -.+.++.....+|+.++..|++++++        
T Consensus       225 P~CisYf~NGEy~L-iGGsdk~L~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~--------  279 (1081)
T KOG1538|consen  225 PCCISYFTNGEYIL-LGGSDKQLSLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVV--------  279 (1081)
T ss_pred             chhheeccCCcEEE-EccCCCceEEEeecC----------------eEEeeccccceeEEEEEEccCCceEE--------
Confidence            77999999999877 666799999997554                23455556778999999999999988        


Q ss_pred             CCCCCceEEEEecC
Q 016547          346 STGGGGTLQIWRMS  359 (387)
Q Consensus       346 tg~~dg~i~iw~~~  359 (387)
                      .|..||+|--|++-
T Consensus       280 ~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  280 VGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEccCeeehhhhH
Confidence            67788999999876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=175.33  Aligned_cols=261  Identities=23%  Similarity=0.342  Sum_probs=201.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .++.+|...|.|+.|.. .+.+++||++|..|+||..++.            .++..+.||.+ .|+.++.+.++.++++
T Consensus       184 krLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~------------~~lAs~rGhs~-ditdlavs~~n~~iaa  249 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETA------------RCLASCRGHSG-DITDLAVSSNNTMIAA  249 (1113)
T ss_pred             HHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccch------------hhhccCCCCcc-ccchhccchhhhhhhh
Confidence            45678999999999988 9999999999999999999998            78889999998 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|..|++|.+.+                                        ..++..+.+|++.|++++|+|.-   
T Consensus       250 aS~D~vIrvWrl~~----------------------------------------~~pvsvLrghtgavtaiafsP~~---  286 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPD----------------------------------------GAPVSVLRGHTGAVTAIAFSPRA---  286 (1113)
T ss_pred             cccCceEEEEecCC----------------------------------------CchHHHHhccccceeeeccCccc---
Confidence            99999999999875                                        44567889999999999999864   


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEE---ee-ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKV---EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                        +.+.||++++||.+-.-  ....   .. .....+.++.+.. .+.-+++++.|+.-..|.+....    +       
T Consensus       287 --sss~dgt~~~wd~r~~~--~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~----~-------  350 (1113)
T KOG0644|consen  287 --SSSDDGTCRIWDARLEP--RIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA----W-------  350 (1113)
T ss_pred             --cCCCCCceEeccccccc--cccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh----h-------
Confidence              77899999999988211  1111   11 1234566777777 88899999999998888766421    1       


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                       +...+.-+.++.+...+.+++-.+-.+++|++..+               .+...+.+|...+..+.++|-+..++.  
T Consensus       351 -~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------------~l~H~l~ghsd~~yvLd~Hpfn~ri~m--  412 (1113)
T KOG0644|consen  351 -RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------------QLLHNLMGHSDEVYVLDVHPFNPRIAM--  412 (1113)
T ss_pred             -hccceEEEeccccccccceeeeeeeEeeeeecccc---------------hhhhhhcccccceeeeeecCCCcHhhh--
Confidence             22222222333233334557777889999999886               345667899999999999999998887  


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                           +.|.||...|||+-      .+.+++....-...+...+||+
T Consensus       413 -----sag~dgst~iwdi~------eg~pik~y~~gh~kl~d~kFSq  448 (1113)
T KOG0644|consen  413 -----SAGYDGSTIIWDIW------EGIPIKHYFIGHGKLVDGKFSQ  448 (1113)
T ss_pred             -----hccCCCceEeeecc------cCCcceeeecccceeeccccCC
Confidence                 55666999999999      6777765544355666667764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=6.5e-19  Score=156.11  Aligned_cols=269  Identities=23%  Similarity=0.468  Sum_probs=205.0

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEE-CCCCC-EEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEP-YVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~-~~~~~-~l~  103 (387)
                      ....|...+.++.+.+ .+..++.++.|+.+.+|+.....           .....+.++....+..+.+ ++++. +++
T Consensus        60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (466)
T COG2319          60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILL  127 (466)
T ss_pred             eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence            4567999999999998 88888888899999999998872           1445555533224566666 88887 555


Q ss_pred             EecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          104 SGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       104 s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ..+. |+.+.+|+...                                       .......+..|...|..++|+|++ 
T Consensus       128 ~~~~~d~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-  167 (466)
T COG2319         128 ASSSLDGTVKLWDLST---------------------------------------PGKLIRTLEGHSESVTSLAFSPDG-  167 (466)
T ss_pred             ccCCCCccEEEEEecC---------------------------------------CCeEEEEEecCcccEEEEEECCCC-
Confidence            5444 99999999974                                       112336678899999999999999 


Q ss_pred             eeEEEecC-CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceE-Ee
Q 016547          183 QEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN-KF  259 (387)
Q Consensus       183 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~  259 (387)
                      ..+++++. |+.+++|++....  ....+..|...+.+++|+| ++. .+++++.|+.|++||...      +..+. .+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~  238 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTL  238 (466)
T ss_pred             CEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeec
Confidence            57777775 9999999998855  5666777999999999998 777 555559999999998885      66766 68


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      ..|.... ...|+|++.. +++++.|+.+++|++......              .....+|...+.++.|.|++..++  
T Consensus       239 ~~~~~~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~--  300 (466)
T COG2319         239 SGHSDSV-VSSFSPDGSL-LASGSSDGTIRLWDLRSSSSL--------------LRTLSGHSSSVLSVAFSPDGKLLA--  300 (466)
T ss_pred             CCCCcce-eEeECCCCCE-EEEecCCCcEEEeeecCCCcE--------------EEEEecCCccEEEEEECCCCCEEE--
Confidence            8887775 4489999964 568999999999999975331              222267888999999999888877  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhh--hccCceEEEeee
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL--EKFKAHVISCTS  385 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~v~~~~f  385 (387)
                            +++.|+.+++|++.      ........  ..|...+..+.|
T Consensus       301 ------~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         301 ------SGSSDGTVRLWDLE------TGKLLSSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             ------EeeCCCcEEEEEcC------CCceEEEeeecccCCceEEEEE
Confidence                  44555889999888      34333333  367777777776

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=8.1e-20  Score=158.36  Aligned_cols=240  Identities=23%  Similarity=0.411  Sum_probs=173.4

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      ++.+.||+++...           .+...+....  .|.+++|+| +..+++.|..+|.|.+||+..+.....       
T Consensus       221 ~~~~~vW~~~~p~-----------~Pe~~~~~~s--~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------  280 (555)
T KOG1587|consen  221 DGVLLVWSLKNPN-----------TPELVLESPS--EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------  280 (555)
T ss_pred             CceEEEEecCCCC-----------CceEEEecCC--ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------
Confidence            3479999998762           4555555544  589999999 466788888999999999986543210       


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-eeEEEecCCCeEEEEEccCCCCceeEEe
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVE  210 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~  210 (387)
                                                 .........|..++..+.|..+-. .-|++++.||.|+.|+++.-..+.....
T Consensus       281 ---------------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~  333 (555)
T KOG1587|consen  281 ---------------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL  333 (555)
T ss_pred             ---------------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence                                       001133457899999999976531 3488899999999999876543221111


Q ss_pred             ----e------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC--CCCCceEEeccccceEEEEEEcCCCCee
Q 016547          211 ----K------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--GVGSPINKFEGHSAAVLCVQWSPDKSSV  278 (387)
Q Consensus       211 ----~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l  278 (387)
                          .      .....+++++|.+.+.+.|++|+.+|.|.--+.......  ...+.+..+..|.++|+++.++|-+..+
T Consensus       334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccce
Confidence                1      123468899999988999999999999877443332111  0123344666789999999999998887


Q ss_pred             EEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          279 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       279 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      |.+++ |-+++||......              ..+..+..+...|++++|||..+.+++++       ..||.|.+||+
T Consensus       414 fls~g-DW~vriWs~~~~~--------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~-------d~~G~l~iWDL  471 (555)
T KOG1587|consen  414 FLSVG-DWTVRIWSEDVIA--------------SPLLSLDSSPDYVTDVAWSPTRPAVFATV-------DGDGNLDIWDL  471 (555)
T ss_pred             eeeec-cceeEeccccCCC--------------CcchhhhhccceeeeeEEcCcCceEEEEE-------cCCCceehhhh
Confidence            87777 9999999987322              23555666777899999999999999854       45599999999


Q ss_pred             CCC
Q 016547          359 SDL  361 (387)
Q Consensus       359 ~~~  361 (387)
                      ...
T Consensus       472 l~~  474 (555)
T KOG1587|consen  472 LQD  474 (555)
T ss_pred             hcc
Confidence            854

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.7e-20  Score=151.59  Aligned_cols=295  Identities=22%  Similarity=0.327  Sum_probs=210.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCC--CCE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPT--EPY  101 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~--~~~  101 (387)
                      .++-+|.|.|..+.|+. .+..|++|+.|..|.+||....            ++... ..+|.. -|..-.|-|.  .+.
T Consensus       136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~------------~~~l~f~SGH~~-NvfQaKFiP~s~d~t  201 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSG------------SPKLSFESGHCN-NVFQAKFIPFSGDRT  201 (559)
T ss_pred             hcccCCCCccceeeecc-cCceeeccCccceEEeehhhcc------------Cccccccccccc-chhhhhccCCCCCcC
Confidence            34557999999999999 9999999999999999999988            33333 456666 4667778774  457


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++++.||.|++=.+.....                                     .+-...+..|.++|..++.-|+.
T Consensus       202 i~~~s~dgqvr~s~i~~t~~-------------------------------------~e~t~rl~~h~g~vhklav~p~s  244 (559)
T KOG1334|consen  202 IVTSSRDGQVRVSEILETGY-------------------------------------VENTKRLAPHEGPVHKLAVEPDS  244 (559)
T ss_pred             ceeccccCceeeeeeccccc-------------------------------------eecceecccccCccceeeecCCC
Confidence            99999999999887653211                                     11124567799999999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEe-eccCC---CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      ++.|.+++.|+.+.-.|++.......... ..+..   ....++.+|.+...+++|+.|-.+++||.+..........+.
T Consensus       245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~  324 (559)
T KOG1334|consen  245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD  324 (559)
T ss_pred             CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence            99999999999999999988763222222 23333   567899999777799999999999999999865433333334


Q ss_pred             Eeccc------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEE
Q 016547          258 KFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHW  329 (387)
Q Consensus       258 ~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~  329 (387)
                      .+..|      .-.|++++|+.++..+||+- .|-.|+++.-... .-..-.+..+. .......+.||..  .|..+-|
T Consensus       325 ~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~-~G~~p~~~s~~-~~~~k~vYKGHrN~~TVKgVNF  401 (559)
T KOG1334|consen  325 KFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMG-DGSEPDPSSPR-EQYVKRVYKGHRNSRTVKGVNF  401 (559)
T ss_pred             hcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccc-cCCCCCCCcch-hhccchhhcccccccccceeee
Confidence            44322      34699999998877777555 5778999944332 11111111100 0111222567754  5777765


Q ss_pred             -ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          330 -NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       330 -~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                       -|...|++        +|+.=|.|.||+-.      +++.++-+.+-...|+|+.=||
T Consensus       402 fGPrsEyVv--------SGSDCGhIFiW~K~------t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  402 FGPRSEYVV--------SGSDCGHIFIWDKK------TGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             ccCccceEE--------ecCccceEEEEecc------hhHHHHHhhcccceEeccCCCC
Confidence             56666655        55555999999999      8999999998888999987776

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.9e-19  Score=159.63  Aligned_cols=284  Identities=18%  Similarity=0.238  Sum_probs=187.2

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEec
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG  106 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~~  106 (387)
                      +...+-..+.|+| -...++++...-.|+|||.+.++....+...          ......|+.+.+-.  |...+++|+
T Consensus      1062 ~n~~~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~----------~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNG----------AFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred             cCCCCCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCC----------CCCCCccceeeeecccchhheeeec
Confidence            3445567788888 5667777776678999999988432222111          11223578888865  456899999


Q ss_pred             CCCeEEEEEcCCCcC-ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          107 KDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      .||.|+||+--.... ....                         +.-|...+    ....+-.+.-.-+.|.... .+|
T Consensus      1131 ~dGvIRIwk~y~~~~~~~eL-------------------------VTaw~~Ls----~~~~~~r~~~~v~dWqQ~~-G~L 1180 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPEL-------------------------VTAWSSLS----DQLPGARGTGLVVDWQQQS-GHL 1180 (1387)
T ss_pred             cCceEEEecccccccCCcee-------------------------EEeecccc----ccCccCCCCCeeeehhhhC-CeE
Confidence            999999997432110 0000                         00000000    0001111111446787766 456


Q ss_pred             EEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      ++++.-..|+|||.....  .... ..+....|+++.-+-..++.+++|..||.|++||.|....   ...+...+.|+.
T Consensus      1181 l~tGd~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1181 LVTGDVRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHND 1255 (1387)
T ss_pred             EecCCeeEEEEEecccce--eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCC
Confidence            666668899999998766  2333 2345567788876654689999999999999999998543   346777888887


Q ss_pred             e--EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---CCeeEEEEccCCCeEEEE
Q 016547          265 A--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---DKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       265 ~--i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~s  339 (387)
                      .  |..+.+.+.|-.-+++|+.||.|++||++.....             .......|.   +.++++..+++.+.++  
T Consensus      1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------------~~~~iv~~~~yGs~lTal~VH~hapiiA-- 1320 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------------TFLTIVAHWEYGSALTALTVHEHAPIIA-- 1320 (1387)
T ss_pred             cccceeEEeecCCCcceeeeccCCeEEEEecccCccc-------------ccceeeeccccCccceeeeeccCCCeee--
Confidence            7  9999998876543679999999999999984111             111222232   2589999999888666  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc-------CceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-------KAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~f~P  387 (387)
                            +|+. +.|+||++.       |+.+..+..+       .+.+.+++|||
T Consensus      1321 ------sGs~-q~ikIy~~~-------G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1321 ------SGSA-QLIKIYSLS-------GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             ------ecCc-ceEEEEecC-------hhhhcccccCcccccCcCCCcceeeecc
Confidence                  7777 999999998       5554444322       34679999998

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=144.39  Aligned_cols=184  Identities=17%  Similarity=0.249  Sum_probs=142.0

Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      +...+.+|.+ .|+++.|+.++++|++|+.|..+++|+++.......                                 
T Consensus        48 ~qKD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~---------------------------------   93 (609)
T KOG4227|consen   48 CQKDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT---------------------------------   93 (609)
T ss_pred             hhhhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC---------------------------------
Confidence            3445788998 899999999999999999999999999986433222                                 


Q ss_pred             CCCCceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          158 SVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       158 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                       .+++.... .|...|.|++|...+ .++.+|..+++|.+.|+++.+...+.......+.|+.+..+| ..+.|++.+.+
T Consensus        94 -~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~  170 (609)
T KOG4227|consen   94 -PKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRA  170 (609)
T ss_pred             -CCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecC
Confidence             23333333 456899999998876 889999999999999999988322222223345899999999 78999999999


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  301 (387)
                      +.|.+||.+..++.  +.++. ..........+.|+|..+.|+++.+..+.+-+||++....++.
T Consensus       171 ~~V~~~D~Rd~~~~--~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~  232 (609)
T KOG4227|consen  171 KLVSFIDNRDRQNP--ISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY  232 (609)
T ss_pred             ceEEEEeccCCCCC--Cceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH
Confidence            99999999974321  22222 2223456788999999998999999999999999998766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.9e-20  Score=154.77  Aligned_cols=235  Identities=17%  Similarity=0.264  Sum_probs=169.7

Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      ....+.||++ .|+|+.|+.+|.+|++|+.|-.+.|||.-..+..                                   
T Consensus        42 lE~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll-----------------------------------   85 (758)
T KOG1310|consen   42 LEAELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL-----------------------------------   85 (758)
T ss_pred             hhhhhccccc-eecceeecCCCCEEeecCCcceEEeecchhccee-----------------------------------
Confidence            3456899998 8999999999999999999999999998643221                                   


Q ss_pred             CCCCceeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCC--------CceeEEeeccCCCeeEEEecCCCCC
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGT--------SPVIKVEKAHDADLHCVDWNPLDDN  228 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~  228 (387)
                          ...-.+|...|.++.|.|. ++.++++|..|..|+++|+...+        ......+..|...|..|+..|...+
T Consensus        86 ----hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph  161 (758)
T KOG1310|consen   86 ----HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH  161 (758)
T ss_pred             ----eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc
Confidence                1233589999999999985 34688999999999999998522        1234456678899999999995559


Q ss_pred             eEEEeeCCCeEEEEEeccCCCCCCCC----ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547          229 LILTGSADNSVRMFDRRNLTSNGVGS----PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       229 ~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  304 (387)
                      .+.+++.||+|+-+|++.+.......    .+..+...--...++.++|..+++||.|+.|-..++||.+...++.....
T Consensus       162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~  241 (758)
T KOG1310|consen  162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG  241 (758)
T ss_pred             eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence            99999999999999999854321111    11111112235679999999999999999999999999765433322222


Q ss_pred             CCCCCCc---eeeeee-ccCC-----------CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          305 RTTNYPA---GLFFQH-AGHR-----------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       305 ~~~~~~~---~~~~~~-~~~~-----------~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .....++   .++..+ .+|.           ..++-++|+|+|.-|+++.+.+        .|+++|+..
T Consensus       242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE--------hVYlfdvn~  304 (758)
T KOG1310|consen  242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE--------HVYLFDVNE  304 (758)
T ss_pred             cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe--------EEEEEeecC
Confidence            1111111   111111 1221           1257788999999999988776        899999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=7.1e-20  Score=154.09  Aligned_cols=234  Identities=19%  Similarity=0.314  Sum_probs=172.7

Q ss_pred             eeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCc
Q 016547           10 LFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA   89 (387)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~   89 (387)
                      ++++++..+.|..-. -.+-....|+.+.|.|.+...||.+++||.|++|.+..+-..     .....+...+.+|.+ .
T Consensus       607 i~el~~PGrLPDgv~-p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~-----e~~~tPe~~lt~h~e-K  679 (1012)
T KOG1445|consen  607 IYELNEPGRLPDGVM-PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP-----ENEMTPEKILTIHGE-K  679 (1012)
T ss_pred             EEEcCCCCCCCcccc-cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC-----cccCCcceeeecccc-e
Confidence            445566666555422 223467789999999999999999999999999999876322     123367788999998 6


Q ss_pred             eEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           90 EFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        90 v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      |+++.|+|- ...|++++.|-+|++||+.+...                                        ...+.+|
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----------------------------------------~~~l~gH  719 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKL----------------------------------------YSRLVGH  719 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhhh----------------------------------------hheeccC
Confidence            999999994 56889999999999999986432                                        3567899


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----CeEEEEEe
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDR  244 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d~  244 (387)
                      ++.|.+++|+|+| +.+++.+.||+|++|+.++.+.+...-...-...--.|.|.- +++++++.+.|    +.|.+||.
T Consensus       720 tdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  720 TDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             cCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhh
Confidence            9999999999999 889999999999999999888543332222223334566766 88888887765    46889988


Q ss_pred             ccCCCCCCCCceEEecccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          245 RNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+..    ..++.+..-.. -.+.--.+.+|...+|++|-.|..|.+|.+-..
T Consensus       798 q~l~----~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  798 QTLD----LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             hhcc----CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            8743    34443332111 112222456677778999999999999998763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=1.1e-17  Score=142.04  Aligned_cols=266  Identities=9%  Similarity=0.132  Sum_probs=168.8

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEe-cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      ++..+.+.+.+....++++| ++++|+++ ..++.|.+|+++.....         ....... ..+ ....++++|+++
T Consensus        25 l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l---------~~~~~~~-~~~-~p~~i~~~~~g~   92 (330)
T PRK11028         25 LTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL---------TFAAESP-LPG-SPTHISTDHQGR   92 (330)
T ss_pred             eeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce---------EEeeeec-CCC-CceEEEECCCCC
Confidence            33445556667788999999 77776554 56889999999732000         0111111 112 245899999999


Q ss_pred             EEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          101 YVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       101 ~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      +|++++. ++.|.+|++++.....                                    .....+. +.....+++++|
T Consensus        93 ~l~v~~~~~~~v~v~~~~~~g~~~------------------------------------~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         93 FLFSASYNANCVSVSPLDKDGIPV------------------------------------APIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             EEEEEEcCCCeEEEEEECCCCCCC------------------------------------Cceeecc-CCCcccEeEeCC
Confidence            9887764 8899999996321100                                    0001111 123456788999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCce-----eEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCC
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~  253 (387)
                      ++..++++...++.|.+||+.+.....     .... ........+.|+| ++++++++.. ++.|.+||+.....  ..
T Consensus       136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~--~~  211 (330)
T PRK11028        136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHG--EI  211 (330)
T ss_pred             CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCC--CE
Confidence            995555677778999999997632110     0111 1234567899999 9999888876 89999999974210  02


Q ss_pred             CceEEeccc------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          254 SPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       254 ~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                      +.+..+..+      ......+.++|++++++++...++.|.+|++.......           ........ ......+
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~-~~~p~~~  279 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPT-ETQPRGF  279 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEec-cccCCce
Confidence            233333221      12234689999999887665668999999997543211           11111111 1245678


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .|+|+|++|+++...       +++|.+|+++
T Consensus       280 ~~~~dg~~l~va~~~-------~~~v~v~~~~  304 (330)
T PRK11028        280 NIDHSGKYLIAAGQK-------SHHISVYEID  304 (330)
T ss_pred             EECCCCCEEEEEEcc-------CCcEEEEEEc
Confidence            999999999975543       4999999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=1.2e-19  Score=158.36  Aligned_cols=237  Identities=15%  Similarity=0.159  Sum_probs=156.5

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCc
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPAT  129 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~  129 (387)
                      +..|.+||.+..            . ...+..|.. .+....|+|||+.|+.++.+   ..|.+||+.++...       
T Consensus       183 ~~~i~i~d~dg~------------~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------  241 (429)
T PRK01742        183 PYEVRVADYDGF------------N-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------  241 (429)
T ss_pred             eEEEEEECCCCC------------C-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------
Confidence            468999998765            2 344556665 68899999999999987643   46999998754211       


Q ss_pred             ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEE--EccCCCCcee
Q 016547          130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW--DARVGTSPVI  207 (387)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~  207 (387)
                                                     .+..+.+|   ...++|+|+|..++++.+.+|.+.||  |+.+++   .
T Consensus       242 -------------------------------~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~  284 (429)
T PRK01742        242 -------------------------------VVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---P  284 (429)
T ss_pred             -------------------------------EEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---e
Confidence                                           01112222   34689999994444445578876665  555544   3


Q ss_pred             EEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          208 KVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                      ..+..+...+....|+| +++.|+..+ .+|...+|++...     +.....+ .+..  ....|+|+|++++ ..+.++
T Consensus       285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~-----~~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~  354 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSAS-----GGGASLV-GGRG--YSAQISADGKTLV-MINGDN  354 (429)
T ss_pred             EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECC-----CCCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC
Confidence            44555667788999999 888776555 5788999988752     2222222 3333  4678999999764 444454


Q ss_pred             eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc
Q 016547          287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ  366 (387)
Q Consensus       287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~  366 (387)
                       +.+||+..+....             +.  ..+  ....+.|+|++++++.+.        .++.+.+|.+...    .
T Consensus       355 -i~~~Dl~~g~~~~-------------lt--~~~--~~~~~~~sPdG~~i~~~s--------~~g~~~~l~~~~~----~  404 (429)
T PRK01742        355 -VVKQDLTSGSTEV-------------LS--STF--LDESPSISPNGIMIIYSS--------TQGLGKVLQLVSA----D  404 (429)
T ss_pred             -EEEEECCCCCeEE-------------ec--CCC--CCCCceECCCCCEEEEEE--------cCCCceEEEEEEC----C
Confidence             6669987743211             10  111  234678999999887433        3466777766421    4


Q ss_pred             chhhhhhhccCceEEEeeecC
Q 016547          367 DEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       367 ~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +..+.++..|.+.+..++|||
T Consensus       405 G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        405 GRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             CCceEEccCCCCCCCCcccCC
Confidence            778888888989999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.6e-20  Score=153.16  Aligned_cols=231  Identities=20%  Similarity=0.349  Sum_probs=169.5

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECC--CCCE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCP--TEPY  101 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~--~~~~  101 (387)
                      ..+.||.|.|+|++|+. +|.+|++|++|-.+.|||.-..            ++++. -.+|.. -|.++.|-|  +.+.
T Consensus        44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~------------KllhsI~TgHta-NIFsvKFvP~tnnri  109 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEY------------KLLHSISTGHTA-NIFSVKFVPYTNNRI  109 (758)
T ss_pred             hhhccccceecceeecC-CCCEEeecCCcceEEeecchhc------------ceeeeeeccccc-ceeEEeeeccCCCeE
Confidence            35568999999999999 9999999999999999998866            44444 467887 589999998  4568


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++|+.|..|+++|+........                              +-....+...+..|...|..++..|++
T Consensus       110 v~sgAgDk~i~lfdl~~~~~~~~------------------------------d~~~~~~~~~~~cht~rVKria~~p~~  159 (758)
T KOG1310|consen  110 VLSGAGDKLIKLFDLDSSKEGGM------------------------------DHGMEETTRCWSCHTDRVKRIATAPNG  159 (758)
T ss_pred             EEeccCcceEEEEeccccccccc------------------------------ccCccchhhhhhhhhhhhhheecCCCC
Confidence            89999999999999975321100                              111223446677899999999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCC--c------eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC---
Q 016547          182 AQEFCSVGDDSCLILWDARVGTS--P------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---  250 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~--~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---  250 (387)
                      ++.|.++++||+|+-+|++....  +      ........--...++.++|.+..+|++|+.|-..++||.+.....   
T Consensus       160 PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s  239 (758)
T KOG1310|consen  160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRS  239 (758)
T ss_pred             CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCC
Confidence            99999999999999999997431  0      001111122356789999988999999999999999995532110   


Q ss_pred             ---------CCCCceEEec-ccc-----------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee
Q 016547          251 ---------GVGSPINKFE-GHS-----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  300 (387)
Q Consensus       251 ---------~~~~~~~~~~-~~~-----------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~  300 (387)
                               ....++..+. +|-           ..++-++|+|+|..||++-+ ...|+++|+.....+.
T Consensus       240 ~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  240 DGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCce
Confidence                     0011233221 111           12567899999999887766 4479999998854443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=1.2e-19  Score=144.46  Aligned_cols=258  Identities=21%  Similarity=0.319  Sum_probs=181.6

Q ss_pred             EeccCCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      ..-|...+|..+.|.++.. .|+||+.|..|++|.++.......                               ....+
T Consensus         8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------------------------~~~V~   56 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------------------------DMKVE   56 (434)
T ss_pred             EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------------------------ceeEE
Confidence            3334445799999999876 999999999999999875321110                               01233


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEcc--------C------CCCceeEEeeccCCCeeEEEecCCC
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--------V------GTSPVIKVEKAHDADLHCVDWNPLD  226 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~i~~~~~~~~~  226 (387)
                      ....+..|...|+++.|+|+| .++++|+.+|.|.+|-..        +      ..+...+...+|...|..++|+| +
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d  134 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-D  134 (434)
T ss_pred             EeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-C
Confidence            446678899999999999999 899999999999999876        2      11234556678999999999999 9


Q ss_pred             CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC--
Q 016547          227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP--  304 (387)
Q Consensus       227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~--  304 (387)
                      ++++++++.|+.+++||+..      +.....+..|...+..++|.|-+++ +++-+.|...+.+++...........  
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~  207 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDI  207 (434)
T ss_pred             CceeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeE
Confidence            99999999999999999999      9999999999999999999999997 46888888777776654221111100  


Q ss_pred             ---CCCCCCceeeeeeccCC----CCeeEEEEccCCCeEEEEec-CCCCCCCC--CceEEEEecCCCcccccchhhhhhh
Q 016547          305 ---RTTNYPAGLFFQHAGHR----DKVVDFHWNASDPWTVVSVS-DDCDSTGG--GGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       305 ---~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~s~s-~d~~tg~~--dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                         ............+ -|.    .-...++|+|+|..++.-++ -+  +|+.  =++.++|+-..     ...+...+.
T Consensus       208 m~~~~~~~~e~~s~rL-fhDeTlksFFrRlsfTPdG~llvtPag~~~--~g~~~~~n~tYvfsrk~-----l~rP~~~lp  279 (434)
T KOG1009|consen  208 MPAKAFNEREGKSTRL-FHDETLKSFFRRLSFTPDGSLLVTPAGLFK--VGGGVFRNTSYVFSRKD-----LKRPAARLP  279 (434)
T ss_pred             eeecccCCCCcceeee-eecCchhhhhhhcccCCCCcEEEcccceee--eCCceeeceeEeecccc-----ccCceeecC
Confidence               0000000111111 122    23567889999987663211 11  1111  13445565553     456777788


Q ss_pred             ccCceEEEeeecC
Q 016547          375 KFKAHVISCTSKP  387 (387)
Q Consensus       375 ~~~~~v~~~~f~P  387 (387)
                      ....++..+.|+|
T Consensus       280 ~~~k~~lavr~~p  292 (434)
T KOG1009|consen  280 SPKKPALAVRFSP  292 (434)
T ss_pred             CCCcceEEEEeee
Confidence            8888888888887

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.7e-18  Score=150.92  Aligned_cols=266  Identities=16%  Similarity=0.230  Sum_probs=182.7

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      ..|.-.++|.+++| +++++|+|..||.|.+|.--..+.        .......+.-|.+ .|+++.|+++|.+|++|+.
T Consensus       202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~--------~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSD--------DSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             hhhcccceeEEecc-ccceEEEeccCCcEEEEecccccc--------ccccceEEEeccc-ccceeEEecCCceEeeccc
Confidence            35777899999999 999999999999999997544211        1134456777877 6999999999999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      .|.+.+|.+.++..                                         +-+..-.++|..+.++||+ .+.+.
T Consensus       272 E~VLv~Wq~~T~~k-----------------------------------------qfLPRLgs~I~~i~vS~ds-~~~sl  309 (792)
T KOG1963|consen  272 EGVLVLWQLETGKK-----------------------------------------QFLPRLGSPILHIVVSPDS-DLYSL  309 (792)
T ss_pred             ceEEEEEeecCCCc-----------------------------------------ccccccCCeeEEEEEcCCC-CeEEE
Confidence            99999999987542                                         3344456889999999999 67777


Q ss_pred             ecCCCeEEEEEccCCCCc-eeEEe--------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC-------
Q 016547          188 VGDDSCLILWDARVGTSP-VIKVE--------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-------  251 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~-~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------  251 (387)
                      ...|+.|.+....+.+.. .+..+        ....+-.+.++++| ..+.++-.+..|.|.+||+.+.....       
T Consensus       310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~  388 (792)
T KOG1963|consen  310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE  388 (792)
T ss_pred             EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence            888999999887554310 11111        11234467788888 77888888888999999876521000       


Q ss_pred             ---CC-----------------------------------Cce----------------E-EeccccceEEEEEEcCC-C
Q 016547          252 ---VG-----------------------------------SPI----------------N-KFEGHSAAVLCVQWSPD-K  275 (387)
Q Consensus       252 ---~~-----------------------------------~~~----------------~-~~~~~~~~i~~~~~~~~-~  275 (387)
                         .+                                   +..                . ....|+..+...++.+. .
T Consensus       389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r  468 (792)
T KOG1963|consen  389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR  468 (792)
T ss_pred             cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence               00                                   000                0 01135544444444433 2


Q ss_pred             CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547          276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  355 (387)
Q Consensus       276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i  355 (387)
                      ...+++++.||.++||-+..........     ..+.+.....-|..++++++|+.||..|+         .+.|++|.+
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~~-----s~W~c~~i~sy~k~~i~a~~fs~dGslla---------~s~~~~Iti  534 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKKS-----SNWTCKAIGSYHKTPITALCFSQDGSLLA---------VSFDDTITI  534 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcCc-----cceEEeeeeccccCcccchhhcCCCcEEE---------EecCCEEEE
Confidence            2256799999999999996543322111     12233443344889999999999996443         345589999


Q ss_pred             EecCC
Q 016547          356 WRMSD  360 (387)
Q Consensus       356 w~~~~  360 (387)
                      ||...
T Consensus       535 wd~~~  539 (792)
T KOG1963|consen  535 WDYDT  539 (792)
T ss_pred             ecCCC
Confidence            99985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-18  Score=156.92  Aligned_cols=285  Identities=14%  Similarity=0.173  Sum_probs=184.8

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ...++..|...|..++.+++.+.+++||+.||+|++||........     ...+...++.- .++.+.++...+.++.+
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~-~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSP-EGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEec-cCCceEEEEeccCCCeE
Confidence            3456667999999999999777999999999999999987653221     11122222322 44578999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCe-EEEEEccC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTV-EDVTFCPS  180 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~~~~  180 (387)
                      |.++.||.|++.+++........                                 .........+ .+.+ ..-++...
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~---------------------------------~~~~ri~n~~~~g~vv~m~a~~~~ 1160 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRV---------------------------------ATQVRIPNLKKDGVVVSMHAFTAI 1160 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccce---------------------------------eeeeecccccCCCceEEeeccccc
Confidence            99999999999999753110000                                 0000111111 1222 23333332


Q ss_pred             CC-eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          181 SA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       181 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      .. ..++.+..-+.|..||+++....-........+.|++++.+| .+++++.|+..|.+.+||+|-      ..++.++
T Consensus      1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw 1233 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSW 1233 (1431)
T ss_pred             ccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------Cceeecc
Confidence            22 367888889999999999876322233344567899999999 899999999999999999997      7777777


Q ss_pred             c-cccceEEEEEEcCCCC---eeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeee----eeccCCCCeeEEEEc
Q 016547          260 E-GHSAAVLCVQWSPDKS---SVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF----QHAGHRDKVVDFHWN  330 (387)
Q Consensus       260 ~-~~~~~i~~~~~~~~~~---~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~  330 (387)
                      + ++..+|..+..+|-.+   ..+.+++ ..+.|.+|++.++...................    ....+.-......+.
T Consensus      1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred             cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence            5 3457788888877533   3444444 57889999999875543332221100000000    000122223333444


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ..+..++        +||.|..|+.||...+
T Consensus      1314 ~~~~~~l--------tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1314 EKNGFLL--------TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cCCceee--------ecCCccceeeccCCCc
Confidence            4456666        8899999999998743

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=6.8e-19  Score=136.10  Aligned_cols=222  Identities=16%  Similarity=0.227  Sum_probs=170.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      +|+|.+|++|++.++.+-....|.||......                                     -.++..++..|
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htls~H   54 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTLSEH   54 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceehhhh
Confidence            79999999999999999999999999987432                                     24556788899


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEc-cCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDA-RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ...|+++.|+|.. +.+++|+.|..-++|.. ..++......+..+....+++.|+| .++.||+|+....|.+|-++..
T Consensus        55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~E  132 (361)
T KOG1523|consen   55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQE  132 (361)
T ss_pred             CcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecc
Confidence            9999999999998 78999999999999998 5555445556677899999999999 9999999999999999877752


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC--ceeccCCCCCCCCc-eeeeeeccCCCCe
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG--KKVEQGPRTTNYPA-GLFFQHAGHRDKV  324 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~v  324 (387)
                      ..  .....+.-+.+.+.|++++|+|++- ++++|+.|+..+||..--..  ++....+.....|. .++..+....+.+
T Consensus       133 Nd--WWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv  209 (361)
T KOG1523|consen  133 ND--WWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV  209 (361)
T ss_pred             cc--eehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence            11  1122223345678899999999987 68899999999999864311  11111122222222 2333444567899


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..+.|+|+|..|+        =.+.|.++.+=|...
T Consensus       210 h~v~fs~sG~~la--------wv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  210 HGVLFSPSGNRLA--------WVGHDSTVSFVDAAG  237 (361)
T ss_pred             eeeEeCCCCCEee--------EecCCCceEEeecCC
Confidence            9999999999887        556678999988874

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=1.1e-18  Score=135.07  Aligned_cols=217  Identities=14%  Similarity=0.221  Sum_probs=175.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -..+|+|.+|++ ++..+|.+.....|.||......         ..++.+++..|.. .|++++|+|..+.|++|+.|.
T Consensus         9 ~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~---------~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~dr   77 (361)
T KOG1523|consen    9 LLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGAD---------LWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDR   77 (361)
T ss_pred             ccCceeeeeecC-CCceEEeccCCceEEEEEecCCC---------CceeceehhhhCc-ceeEEeecCCCCceeEccCCC
Confidence            467899999999 88999999999999999987761         2467889999998 799999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .-.+|....                                     ....++...+..+....+++.|+|.+ +.|++|+
T Consensus        78 nayVw~~~~-------------------------------------~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgS  119 (361)
T KOG1523|consen   78 NAYVWTQPS-------------------------------------GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGS  119 (361)
T ss_pred             CccccccCC-------------------------------------CCeeccceeEEEeccceeeEeecCcC-ceEEecc
Confidence            999998742                                     23455667778889999999999998 8999999


Q ss_pred             CCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC------------CCCCCCc
Q 016547          190 DDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT------------SNGVGSP  255 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------~~~~~~~  255 (387)
                      .-..|.+|-.+..+.  ........+.+.|++++|+| ++-+|++|+.|+..|+|...-..            +.+.+..
T Consensus       120 gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l  198 (361)
T KOG1523|consen  120 GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL  198 (361)
T ss_pred             CccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence            999999998876551  11223446778899999999 99999999999999999754210            1112444


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +.++..-.+.+..+.|+|+|.. |+=.+.|+.+.+-|.....
T Consensus       199 m~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  199 MSEASSSGGWVHGVLFSPSGNR-LAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             HHhhccCCCceeeeEeCCCCCE-eeEecCCCceEEeecCCCc
Confidence            5555556788999999999996 5677889999999987754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=141.04  Aligned_cols=196  Identities=21%  Similarity=0.324  Sum_probs=150.2

Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      ..+|++-..|+|++||..+++                                        .+..+.++...++.+.|..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~----------------------------------------~l~~fk~~~~~~N~vrf~~   80 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ----------------------------------------LLEEFKGPPATTNGVRFIS   80 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh----------------------------------------hhheecCCCCcccceEEec
Confidence            457777789999999997643                                        3366777888888888876


Q ss_pred             C-CCeeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeC----CCeEEEEEeccCCCCCCC
Q 016547          180 S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       180 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~  253 (387)
                      . ++..+.+|+.||+|++||++............+. .+..+++..- .++.+++|..    +-.|.+||.|..     .
T Consensus        81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~-----q  154 (376)
T KOG1188|consen   81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSE-----Q  154 (376)
T ss_pred             CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccc-----c
Confidence            4 5578999999999999999987755555565555 5677887776 6788888764    568999999983     2


Q ss_pred             CceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          254 SPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       254 ~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                      +++..+ ..|...|+++.|+|+.+.+|++|+.||.|.|||+....+.            ..+.....|...|..+.|..+
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------------DaL~~viN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------------DALLHVINHGSSIHLIGWLSK  222 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch------------hhHHHhhcccceeeeeeeecC
Confidence            324444 6799999999999999999999999999999999875332            123334457778999999987


Q ss_pred             C-CeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          333 D-PWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       333 ~-~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      + +.+.        +-+...+..+|++++.
T Consensus       223 ~ykrI~--------clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  223 KYKRIM--------CLTHMETFAIYELEDG  244 (376)
T ss_pred             CcceEE--------EEEccCceeEEEccCC
Confidence            7 2333        3345589999999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=6.9e-17  Score=143.13  Aligned_cols=251  Identities=27%  Similarity=0.526  Sum_probs=187.8

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      ........|...|.+++|+| ++..+++++. |+.+++|+....            .....+.+|.. .|.+++|+|++.
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~  211 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTG------------KPLSTLAGHTD-PVSSLAFSPDGG  211 (466)
T ss_pred             eEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCC------------ceEEeeccCCC-ceEEEEEcCCcc
Confidence            34456678999999999999 7778888875 999999999986            66777888887 799999999998


Q ss_pred             -EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce-eecCCCCCeEEEEEc
Q 016547          101 -YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-IYNGHEDTVEDVTFC  178 (387)
Q Consensus       101 -~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~  178 (387)
                       .+++++.|+.|++||...+..                                        .. .+..|.... ...|+
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~----------------------------------------~~~~~~~~~~~~-~~~~~  250 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKL----------------------------------------LRSTLSGHSDSV-VSSFS  250 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcE----------------------------------------EeeecCCCCcce-eEeEC
Confidence             556669999999997763221                                        12 456666664 33899


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      |++ ..+++++.|+.+++|+++.... .......|...+.++.|.| ++..+++++.|+.+.+||...      ......
T Consensus       251 ~~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~------~~~~~~  321 (466)
T COG2319         251 PDG-SLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET------GKLLSS  321 (466)
T ss_pred             CCC-CEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCC------CceEEE
Confidence            998 7888999999999999987764 2333367889999999999 888888899999999998887      554555


Q ss_pred             ec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547          259 FE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  336 (387)
Q Consensus       259 ~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  336 (387)
                      ..  .|...+..+.|.+++..+..++..|+.+.+|++.... .              ....... ..+..+.+.+ . ..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~--------------~~~~~~~-~~~~~~~~~~-~-~~  383 (466)
T COG2319         322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P--------------LKTLEGH-SNVLSVSFSP-D-GR  383 (466)
T ss_pred             eeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-e--------------eEEecCC-ceEEEEEECC-C-CC
Confidence            44  7777899999943324455444678999999998853 1              1111111 1288899998 6 44


Q ss_pred             EEEecCCCCCCCCCceEEEEecCC
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..+      .+..++.+.+|+...
T Consensus       384 ~~~------~~~~~~~~~~~~~~~  401 (466)
T COG2319         384 VVS------SGSTDGTVRLWDLST  401 (466)
T ss_pred             EEE------EecCCCceEEEeccc
Confidence            432      245669999999993

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.7e-19  Score=143.34  Aligned_cols=200  Identities=16%  Similarity=0.212  Sum_probs=147.4

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEE
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  114 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vw  114 (387)
                      .+++|+. ++..|++|+.||++|||++...            ..+.....|.. .|.++.|+|||++|++-+.| ..+||
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~------------~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW  212 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSM------------LTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVW  212 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcc------------hhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEE
Confidence            7889888 8899999999999999998877            55556667776 69999999999999999999 99999


Q ss_pred             EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC---C-eeEEEecC
Q 016547          115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS---A-QEFCSVGD  190 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~~l~~~~~  190 (387)
                      +++++.......+                                      .........+.|+.++   . .+++....
T Consensus       213 ~~~~g~~~a~~t~--------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~  254 (398)
T KOG0771|consen  213 SVNTGAALARKTP--------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFP  254 (398)
T ss_pred             EeccCchhhhcCC--------------------------------------cccchhhhhceecccCCCceEEEEEecCC
Confidence            9998733322211                                      1222334455565443   1 12233344


Q ss_pred             CCeEEEEEccCCCCc---eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceE
Q 016547          191 DSCLILWDARVGTSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAV  266 (387)
Q Consensus       191 dg~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i  266 (387)
                      .+.|+.||+......   ...........|.++++++ +|++++.|+.||.|.+++..+      .+.++ .-+.|...|
T Consensus       255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~------lq~~~~vk~aH~~~V  327 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKS------LQRLQYVKEAHLGFV  327 (398)
T ss_pred             CCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEece------eeeeEeehhhheeee
Confidence            566777776554321   1122223345799999999 999999999999999999998      44443 446899999


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +.+.|+|+.+++ ++.+.|..+.|..+..
T Consensus       328 T~ltF~Pdsr~~-~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  328 TGLTFSPDSRYL-ASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEEEcCCcCcc-cccccCCceeEEEEee
Confidence            999999999974 5788888888888765

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=128.87  Aligned_cols=231  Identities=20%  Similarity=0.299  Sum_probs=154.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .|.+-+|+|.+++|+.|..+|.|.+..++.......                              ..+...++...++|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------------------~~~gk~~iv~eqah   61 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------------------EPPGKLKIVPEQAH   61 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------------------CCCCCcceeecccc
Confidence            366778999999999999999999999875322111                              11122334555899


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-----ceeE-Eeecc-----CCCeeEEEecCCCCCeEEEeeCCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIK-VEKAH-----DADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~-~~~~~-----~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                      .++|..++|..   .+|++|+ ||.|+-|.-+....     +... ..+.|     --.|++|...| ..+-++.++.|+
T Consensus        62 dgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~  136 (325)
T KOG0649|consen   62 DGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDG  136 (325)
T ss_pred             CCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCe
Confidence            99999999983   4677776 49999997654331     0111 11112     23688999999 666666666999


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      .++-||+++      ++..+++++|...|.+++-......+| +|++||++|+||.++.+......+...      ...+
T Consensus       137 ~~y~~dlE~------G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~------~~~l  203 (325)
T KOG0649|consen  137 VIYQVDLED------GRIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKN------PNLL  203 (325)
T ss_pred             EEEEEEecC------CEEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeEEeccccC------hhhc
Confidence            999999999      999999999999999999844444455 999999999999998654332221110      1112


Q ss_pred             ccCC-CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          318 AGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       318 ~~~~-~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      ..|. .+|-+++-+  ..+|+         ||..-.+.+|+++      ..++...+. ..++|..|.|
T Consensus       204 Rp~~g~wigala~~--edWlv---------CGgGp~lslwhLr------sse~t~vfp-ipa~v~~v~F  254 (325)
T KOG0649|consen  204 RPDWGKWIGALAVN--EDWLV---------CGGGPKLSLWHLR------SSESTCVFP-IPARVHLVDF  254 (325)
T ss_pred             CcccCceeEEEecc--CceEE---------ecCCCceeEEecc------CCCceEEEe-cccceeEeee
Confidence            2232 356666654  44665         3334689999999      555544443 2333433333

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=143.00  Aligned_cols=232  Identities=16%  Similarity=0.255  Sum_probs=155.8

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .|...|.|+.|+. +...+.+++++-.+.-||+.+.+.......+....+    ..|..+  .+..=-.....++.++.|
T Consensus        12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt----~~h~~~--rs~~~g~~~d~~~i~s~D   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPT----DMHLGG--RSSGGGKGSDTLLICSND   84 (737)
T ss_pred             ccceeEEeecccc-cceEEEeccCceEEEeecccchhhhhhhCCcccCCc----cccccc--cccCCCCCcceEEEEcCC
Confidence            5777788999998 667776666555555555554421111000000000    001110  000001123467888889


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.+.+.+-...                                         .......|.+.+.+-.|+|+| .-|+++
T Consensus        85 Gkf~il~k~~r-----------------------------------------VE~sv~AH~~A~~~gRW~~dG-tgLlt~  122 (737)
T KOG1524|consen   85 GRFVILNKSAR-----------------------------------------VERSISAHAAAISSGRWSPDG-AGLLTA  122 (737)
T ss_pred             ceEEEecccch-----------------------------------------hhhhhhhhhhhhhhcccCCCC-ceeeee
Confidence            99988764321                                         224567899999999999999 779999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      ++||.|++|.-...-   ...+.....+|+|++|.|+..+.+.+.  .+.+.+=.+..      ...+...++|++-|.+
T Consensus       123 GEDG~iKiWSrsGML---RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~------n~k~i~WkAHDGiiL~  191 (737)
T KOG1524|consen  123 GEDGVIKIWSRSGML---RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAA------NSKIIRWRAHDGLVLS  191 (737)
T ss_pred             cCCceEEEEeccchH---HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccc------ccceeEEeccCcEEEE
Confidence            999999999854332   233445677999999999444555443  34565555555      5677788999999999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      +.|++.+. ++++|++|-+.+|||-..                ..++....|+.+|++++|+|+..+++
T Consensus       192 ~~W~~~s~-lI~sgGED~kfKvWD~~G----------------~~Lf~S~~~ey~ITSva~npd~~~~v  243 (737)
T KOG1524|consen  192 LSWSTQSN-IIASGGEDFRFKIWDAQG----------------ANLFTSAAEEYAITSVAFNPEKDYLL  243 (737)
T ss_pred             eecCcccc-ceeecCCceeEEeecccC----------------cccccCChhccceeeeeeccccceee
Confidence            99999988 678999999999999775                24566678889999999999844433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=3e-18  Score=141.56  Aligned_cols=209  Identities=16%  Similarity=0.290  Sum_probs=160.8

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  123 (387)
                      .+.++.++.||.+.|.+-..             +.......|.+ ++.+-.|+|||.-|++++.||.|++|.-...    
T Consensus        75 ~d~~~i~s~DGkf~il~k~~-------------rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM----  136 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA-------------RVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGM----  136 (737)
T ss_pred             cceEEEEcCCceEEEecccc-------------hhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccch----
Confidence            35778889999999887433             34556788887 7899999999999999999999999985421    


Q ss_pred             ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547          124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  203 (387)
                                                           ...++.....+|.|++|.|+.+..+.+.+  +.+.+=.+....
T Consensus       137 -------------------------------------LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~  177 (737)
T KOG1524|consen  137 -------------------------------------LRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS  177 (737)
T ss_pred             -------------------------------------HHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc
Confidence                                                 11233445678999999999866666654  556665555544


Q ss_pred             CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec
Q 016547          204 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~  283 (387)
                        .......|.+-|.++.|++ ..+++++|+.|-..++||..       +.++..-..|+.+|++++|+|+ . +++.++
T Consensus       178 --k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S  245 (737)
T KOG1524|consen  178 --KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPE-K-DYLLWS  245 (737)
T ss_pred             --ceeEEeccCcEEEEeecCc-cccceeecCCceeEEeeccc-------CcccccCChhccceeeeeeccc-c-ceeeee
Confidence              3556789999999999999 99999999999999999988       7888888889999999999999 3 566666


Q ss_pred             CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      . .+++   ++                       ....+.|..++|++||..+.        .|...|.+.+=
T Consensus       246 ~-nt~R---~~-----------------------~p~~GSifnlsWS~DGTQ~a--------~gt~~G~v~~A  283 (737)
T KOG1524|consen  246 Y-NTAR---FS-----------------------SPRVGSIFNLSWSADGTQAT--------CGTSTGQLIVA  283 (737)
T ss_pred             e-eeee---ec-----------------------CCCccceEEEEEcCCCceee--------ccccCceEEEe
Confidence            3 3444   11                       22346899999999999887        44445655543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=2.4e-18  Score=142.79  Aligned_cols=225  Identities=18%  Similarity=0.202  Sum_probs=157.0

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      ......+.+|.++|.|+++.+ ++..+.+|+-||+|+.|++...  ...............+.||++ .|+.+++++...
T Consensus       334 ~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n--~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~  409 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPN--QDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKD  409 (577)
T ss_pred             eeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCC--CCcccccCcchhccceecccc-ceeeeeeccccc
Confidence            344567778999999999888 9999999999999999987622  221111222245567899998 799999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .|++|+.||+++.|+........ +.                                     .-.. .+.-..+.+-..
T Consensus       410 ~Llscs~DgTvr~w~~~~~~~~~-f~-------------------------------------~~~e-~g~Plsvd~~ss  450 (577)
T KOG0642|consen  410 RLLSCSSDGTVRLWEPTEESPCT-FG-------------------------------------EPKE-HGYPLSVDRTSS  450 (577)
T ss_pred             ceeeecCCceEEeeccCCcCccc-cC-------------------------------------Cccc-cCCcceEeeccc
Confidence            99999999999999986532200 00                                     0001 112233444322


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      ...+.++...-+.--++++.......+...     ......+..+.++| ...+.+++..|+.|+++|..+      +.+
T Consensus       451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~------~~~  523 (577)
T KOG0642|consen  451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT------GKI  523 (577)
T ss_pred             hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc------ccc
Confidence            212222222333333444433331111111     11123467788899 889999999999999999999      999


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +.+..+|...++++++.|+|.+ |++++.|+.+++|.+...
T Consensus       524 l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chheeeccceecceeecCCCce-EEeecCCceeehhhccch
Confidence            9999999999999999999997 569999999999999763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=9.1e-17  Score=140.02  Aligned_cols=240  Identities=12%  Similarity=0.081  Sum_probs=154.3

Q ss_pred             cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec---CCCeEEEEEcCCCcCccccCCCccc
Q 016547           55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG---KDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      .|.+||.+..            ... .+..+.. .+....|+|||+.|+..+   .+..|.+|++.++..          
T Consensus       180 ~l~~~d~dg~------------~~~-~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~----------  235 (429)
T PRK03629        180 ELRVSDYDGY------------NQF-VVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------  235 (429)
T ss_pred             eEEEEcCCCC------------CCE-EeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe----------
Confidence            6888888766            222 2333443 578999999999988654   245788999875421          


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeEE
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV  209 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~  209 (387)
                                                     ..+....+.+..+.|+|||..++++.+.+|  .|.+||+.+++   ...
T Consensus       236 -------------------------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~  281 (429)
T PRK03629        236 -------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQ  281 (429)
T ss_pred             -------------------------------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEE
Confidence                                           111112223446799999955555555555  58889998776   333


Q ss_pred             eeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC--C
Q 016547          210 EKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--G  286 (387)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~  286 (387)
                      +..+...+....|+| +++.|+..+.+ +...+|.+...     +.....+...........|+|+|++++.++..+  .
T Consensus       282 lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~-----~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        282 VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNIN-----GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECC-----CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence            444455678899999 89888776654 55556644321     222334433444566789999999876555444  3


Q ss_pred             eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc
Q 016547          287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ  366 (387)
Q Consensus       287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~  366 (387)
                      .|.+||+......                .+... .......|+|||++++.++.+.     ....+.+++++       
T Consensus       356 ~I~~~dl~~g~~~----------------~Lt~~-~~~~~p~~SpDG~~i~~~s~~~-----~~~~l~~~~~~-------  406 (429)
T PRK03629        356 HIAKQDLATGGVQ----------------VLTDT-FLDETPSIAPNGTMVIYSSSQG-----MGSVLNLVSTD-------  406 (429)
T ss_pred             eEEEEECCCCCeE----------------EeCCC-CCCCCceECCCCCEEEEEEcCC-----CceEEEEEECC-------
Confidence            5888888764221                11111 1234678999999888655421     12457888887       


Q ss_pred             chhhhhhhccCceEEEeeecC
Q 016547          367 DEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       367 ~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +.....+.+|.+.+...+|+|
T Consensus       407 G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        407 GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCeEECccCCCCcCCcccCC
Confidence            555677778888999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=8.3e-18  Score=149.51  Aligned_cols=259  Identities=12%  Similarity=0.199  Sum_probs=173.5

Q ss_pred             CCcEEEEEecC-CCCcEEEEecCCCcEEEEeccCCC-CcccccCCCCCCCeEEE-------eccCCCceEEEEECCCCCE
Q 016547           31 PGEVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQP-NRHAVLGATNSRPDLIL-------TGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        31 ~~~v~~i~~~~-~~~~~l~t~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~-------~~h~~~~v~~~~~~~~~~~  101 (387)
                      ...|+.+.+.. ++..++.+|+.||.|+||+-.... ...        +.+..+       .+..+.. .-++|.....+
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~--------eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP--------ELVTAWSSLSDQLPGARGTG-LVVDWQQQSGH 1179 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCc--------eeEEeeccccccCccCCCCC-eeeehhhhCCe
Confidence            35678887765 466789999999999999754332 111        111111       1111211 35788877777


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++++.-..|+|||...........                                       .+....|+++.-.-..
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~~~diP---------------------------------------~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIP---------------------------------------YGSSTLVTALSADLVH 1220 (1387)
T ss_pred             EEecCCeeEEEEEecccceeEeecc---------------------------------------cCCCccceeecccccC
Confidence            7777778999999998654332211                                       1234456666655444


Q ss_pred             CeeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCC--eeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          182 AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDAD--LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ++++++|..||.|++||.+.... ..+.....|...  |..+.+.+..-..|++|+.||.|++||+|...    ......
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~----~e~~~~ 1296 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS----KETFLT 1296 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc----ccccce
Confidence            48999999999999999987653 134556678777  99999988333469999999999999999842    222333


Q ss_pred             ecccc---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          259 FEGHS---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       259 ~~~~~---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +..|-   +..+++..+++.+ ++|+|+. +.|+||++..........      .+..+   ....+.+.+++|+|..-.
T Consensus      1297 iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~------n~~F~---~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKY------NPGFM---GQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred             eeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccccc------Ccccc---cCcCCCcceeeecchhHh
Confidence            33332   3589999999998 6888887 999999998632221110      00111   113346799999997655


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ++        +|..|.+|.||....
T Consensus      1366 lA--------aG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1366 LA--------AGSADSTVSIYSCEK 1382 (1387)
T ss_pred             hh--------hccCCceEEEeecCC
Confidence            54        677779999999873

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=1.4e-16  Score=125.81  Aligned_cols=237  Identities=11%  Similarity=0.182  Sum_probs=161.5

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC--
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--  108 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d--  108 (387)
                      ...+..+.|.. +...|..|+.|| .++++.+....           ...  ..-.+..|--+-|+  ..++|..+.+  
T Consensus         5 ~~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k-----------~~~--~~~~~~~IvEmLFS--SSLvaiV~~~qp   67 (391)
T KOG2110|consen    5 KPTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEK-----------CFS--KDTEGVSIVEMLFS--SSLVAIVSIKQP   67 (391)
T ss_pred             Ccceeeeeecc-ceeEEEccCCCc-eeEEecCchHH-----------hhc--ccCCCeEEEEeecc--cceeEEEecCCC
Confidence            34566677777 888999999998 67787766521           000  11111123344454  4455544433  


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +.+++.+++.......                                         -....+|.++.++.+   .|+++
T Consensus        68 r~Lkv~~~Kk~~~ICe-----------------------------------------~~fpt~IL~VrmNr~---RLvV~  103 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICE-----------------------------------------IFFPTSILAVRMNRK---RLVVC  103 (391)
T ss_pred             ceEEEEEcccCceEEE-----------------------------------------EecCCceEEEEEccc---eEEEE
Confidence            4588888875432211                                         123467899998754   46665


Q ss_pred             cCCCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          189 GDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      -.+. |+|||+++.+  .+..+.   .+...+.++.+++ .+.+++--+  ..|.|.+||..+      .+++..+..|+
T Consensus       104 Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~  173 (391)
T KOG2110|consen  104 LEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHK  173 (391)
T ss_pred             Eccc-EEEEecccce--eehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc------ceeeeEEEecC
Confidence            5544 9999999987  344333   3455566666666 566777543  358999999999      89999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEccCCCeEEEEe
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      +++-+++|+++|. ++|++++.|+ ||||.+..+.+..               .++.  -...|.+++|+|++++|.++ 
T Consensus       174 ~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~---------------eFRRG~~~~~IySL~Fs~ds~~L~~s-  236 (391)
T KOG2110|consen  174 GPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLY---------------EFRRGTYPVSIYSLSFSPDSQFLAAS-  236 (391)
T ss_pred             CceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEee---------------eeeCCceeeEEEEEEECCCCCeEEEe-
Confidence            9999999999999 5799999887 8999998864432               2222  13478999999999988744 


Q ss_pred             cCCCCCCCCCceEEEEecCCCc
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                             |..++|+||.+....
T Consensus       237 -------S~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  237 -------SNTETVHIFKLEKVS  251 (391)
T ss_pred             -------cCCCeEEEEEecccc
Confidence                   334799999998543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=5.1e-18  Score=136.11  Aligned_cols=202  Identities=16%  Similarity=0.259  Sum_probs=146.9

Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      .+++|+.+|..|++++.||++|+|+....                                        ..+.....|..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----------------------------------------~t~l~e~~~~~  187 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----------------------------------------LTILEEIAHHA  187 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc----------------------------------------hhhhhhHhhcC
Confidence            58999999999999999999999997532                                        22344567889


Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC-----CeEEEeeCCCeEEEEEec
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-----NLILTGSADNSVRMFDRR  245 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~i~~~d~~  245 (387)
                      .|.++.|+||+ .+|++.+.| ..++|+.+++.................+.|+. ++     .+++.-..-+.|+.||+.
T Consensus       188 eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~  264 (398)
T KOG0771|consen  188 EVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDIS  264 (398)
T ss_pred             ccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEee
Confidence            99999999999 899999999 99999999985211111122334455667766 55     333333445678888877


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      ........+....+. ....|++++.+++|++ +|.|+.||.|-|++..+...              .......|...|+
T Consensus       265 ~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf-~AlGT~dGsVai~~~~~lq~--------------~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  265 LWSGSNFLRLRKKIK-RFKSISSLAVSDDGKF-LALGTMDGSVAIYDAKSLQR--------------LQYVKEAHLGFVT  328 (398)
T ss_pred             eeccccccchhhhhh-ccCcceeEEEcCCCcE-EEEeccCCcEEEEEeceeee--------------eEeehhhheeeee
Confidence            633211111111222 2347999999999995 68999999999999987532              2344567999999


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+.|+|+.+++.        +-+.|....|..+.
T Consensus       329 ~ltF~Pdsr~~~--------svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  329 GLTFSPDSRYLA--------SVSSDNEAAVTKLA  354 (398)
T ss_pred             eEEEcCCcCccc--------ccccCCceeEEEEe
Confidence            999999999888        66667888888877

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.79  E-value=3.4e-17  Score=135.34  Aligned_cols=140  Identities=21%  Similarity=0.408  Sum_probs=114.4

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC---C-----------------------ceeEEeeccCCCeeEEEe
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---S-----------------------PVIKVEKAHDADLHCVDW  222 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~-----------------------~~~~~~~~~~~~i~~~~~  222 (387)
                      +..|+|+.|-|.++..|+.+-.+|.+.+||..-..   .                       ..+.......+.|+..+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            36899999999888899999999999999863210   0                       011112223457889999


Q ss_pred             cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceecc
Q 016547          223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  302 (387)
Q Consensus       223 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  302 (387)
                      +| ++++||+.+.||.+||||..+      .+.+...+..-+...|++|||||++ +++|++|--|.||.+...      
T Consensus       299 S~-DG~~LA~VSqDGfLRvF~fdt------~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGEDDLVtVwSf~er------  364 (636)
T KOG2394|consen  299 SP-DGKYLATVSQDGFLRIFDFDT------QELLGVMKSYFGGLLCVCWSPDGKY-IVTGGEDDLVTVWSFEER------  364 (636)
T ss_pred             cC-CCceEEEEecCceEEEeeccH------HHHHHHHHhhccceEEEEEcCCccE-EEecCCcceEEEEEeccc------
Confidence            99 999999999999999999998      5666666666678999999999997 579999999999999875      


Q ss_pred             CCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          303 GPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                               +++..-.+|.++|+.++|.|
T Consensus       365 ---------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 ---------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ---------eEEEeccccccceeeEeecc
Confidence                     56777789999999999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=5.6e-18  Score=127.65  Aligned_cols=241  Identities=16%  Similarity=0.197  Sum_probs=166.5

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      .+...+++|.+ .|+++.|..+++ |.+|..-|.|.+|++++....                                  
T Consensus         5 dP~fvLRp~~~-~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----------------------------------   48 (323)
T KOG0322|consen    5 DPFFVLRPHSS-SVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----------------------------------   48 (323)
T ss_pred             CCeeEeccccc-hheehhhccchh-hhcccccceEEEEEeecCccc----------------------------------
Confidence            67788899987 689999987765 999999999999999865332                                  


Q ss_pred             CCCCCceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----------------------e------
Q 016547          157 PSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----------------------V------  206 (387)
Q Consensus       157 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------------~------  206 (387)
                            ..++ .+...|+.+.-.|++  .+.+-+.|+.+.+|++.-....                       .      
T Consensus        49 ------~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   49 ------PLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             ------hhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence                  2333 456677777777764  4777778888888887542100                       0      


Q ss_pred             ------------------eEE----eeccCCCeeEEEecCCCC--CeEEEeeCCCeEEEEEeccCCC----CCCCCceEE
Q 016547          207 ------------------IKV----EKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTS----NGVGSPINK  258 (387)
Q Consensus       207 ------------------~~~----~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~  258 (387)
                                        +..    .....+.+.+..+.-.++  -++++|-.+|.+.+||+.+.+.    ....+.+..
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence                              000    001123344444322122  3667788899999999998311    001133444


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      ...|..+|.++.+.+.-.. =++|+.+..+..|++........           .-....-....|..+..-||++.++ 
T Consensus       201 ~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~s~gslq-----------~~~e~~lknpGv~gvrIRpD~KIlA-  267 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNHSTGSLQ-----------IRKEITLKNPGVSGVRIRPDGKILA-  267 (323)
T ss_pred             hhhccCcceeeeechhhcC-CcCCCccccceeeeeccccCccc-----------ccceEEecCCCccceEEccCCcEEe-
Confidence            5568899999999874332 24788888899999986422111           1111122334788999999998777 


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                             |+|.|+.||||+.+      +..++..+.-|++.|.+++|+|
T Consensus       268 -------TAGWD~RiRVyswr------tl~pLAVLkyHsagvn~vAfsp  303 (323)
T KOG0322|consen  268 -------TAGWDHRIRVYSWR------TLNPLAVLKYHSAGVNAVAFSP  303 (323)
T ss_pred             -------ecccCCcEEEEEec------cCCchhhhhhhhcceeEEEeCC
Confidence                   89999999999999      8999999999999999999998

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3.8e-16  Score=132.52  Aligned_cols=244  Identities=9%  Similarity=0.136  Sum_probs=148.0

Q ss_pred             EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-CCCeEEEEEcCCCcCccc
Q 016547           46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~  124 (387)
                      ++++...++.|.+||+.+...         ...+..+... + ....++++|++++|++++ .++.|.+|+++...... 
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~---------l~~~~~~~~~-~-~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-   71 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGA---------LTLLQVVDVP-G-QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-   71 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCc---------eeeeeEEecC-C-CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-
Confidence            344556789999999964310         0233334322 2 246899999999987654 57899999986211000 


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                                                          ..... ........+.++|++..++++...++.|.+|++.+...
T Consensus        72 ------------------------------------~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~  114 (330)
T PRK11028         72 ------------------------------------FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI  114 (330)
T ss_pred             ------------------------------------Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence                                                00001 11223567999999944444445689999999974321


Q ss_pred             c--eeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCC-CCceEEeccccceEEEEEEcCCCCeeEE
Q 016547          205 P--VIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVFG  280 (387)
Q Consensus       205 ~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ll~  280 (387)
                      .  ..... .+......++++| +++++++++ .++.|.+||+.+...... ........ .......++|+|+++++++
T Consensus       115 ~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        115 PVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEE
Confidence            1  12222 2334567889999 887775554 569999999976210000 00001111 2334678999999998776


Q ss_pred             EecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc------CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547          281 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  354 (387)
Q Consensus       281 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~  354 (387)
                      +...++.|.+|++.......           ..+..+..      +......+.++|++++++++..       .++.|.
T Consensus       192 ~~~~~~~v~v~~~~~~~~~~-----------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------~~~~I~  253 (330)
T PRK11028        192 VNELNSSVDVWQLKDPHGEI-----------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-------TASLIS  253 (330)
T ss_pred             EecCCCEEEEEEEeCCCCCE-----------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-------CCCeEE
Confidence            66669999999997421111           01111111      1223456899999999987433       348999


Q ss_pred             EEecC
Q 016547          355 IWRMS  359 (387)
Q Consensus       355 iw~~~  359 (387)
                      +|+++
T Consensus       254 v~~i~  258 (330)
T PRK11028        254 VFSVS  258 (330)
T ss_pred             EEEEe
Confidence            99996

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1e-16  Score=126.27  Aligned_cols=276  Identities=13%  Similarity=0.163  Sum_probs=176.7

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEEecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s~~~d  108 (387)
                      .+-.+..++|++ .-.-+|++..|-.|++||-...             ....++......|+|++|-|.+ +.|+.|+. 
T Consensus        97 s~~dlr~~aWhq-H~~~fava~nddvVriy~ksst-------------~pt~Lks~sQrnvtclawRPlsaselavgCr-  161 (445)
T KOG2139|consen   97 SEIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSST-------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-  161 (445)
T ss_pred             hhcceeeEeech-hhhhhhhhccCcEEEEeccCCC-------------CCceecchhhcceeEEEeccCCcceeeeeec-
Confidence            345678899998 6667888899999999997663             2234444444469999999965 45666664 


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +-|.+|...........                         ++ ........+....+| .+|++++|.+|| ..++++
T Consensus       162 ~gIciW~~s~tln~~r~-------------------------~~-~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tA  213 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRN-------------------------IR-MMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTA  213 (445)
T ss_pred             ceeEEEEcCcccccccc-------------------------cc-cccccchhheeCCCC-ceeeEEEEcCCC-CEEeec
Confidence            56899987643211100                         00 000001112333455 789999999999 667776


Q ss_pred             c-CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547          189 G-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  267 (387)
Q Consensus       189 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~  267 (387)
                      + .|..|.|||..++....+.  ....+.+.-+.|+| ++.+|++++-|+..++|.....     ....+-.- -.+.|.
T Consensus       214 S~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~-----wt~erw~l-gsgrvq  284 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS-----WTKERWIL-GSGRVQ  284 (445)
T ss_pred             ccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc-----ceecceec-cCCcee
Confidence            6 5678999999998854333  23456788999999 9999999999999999965542     33333333 245899


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee------cc---CCCCeeEEEEccCCCeEEE
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------AG---HRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~v~~~~~~~~~~~l~~  338 (387)
                      ..+|+|+|++||.+++..  -++|.+...++..............++..+      .+   -.+++.+++|.|.|.+|++
T Consensus       285 tacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             eeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence            999999999998887644  455666544443322211111111111111      11   1457899999999999998


Q ss_pred             EecCCCCCCCCCceEEEEecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.-.....--.-..|.+||..
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr  383 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTR  383 (445)
T ss_pred             EEcCCchhhhhhhhhhhhccc
Confidence            764220001122456677766

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=6e-19  Score=143.01  Aligned_cols=258  Identities=12%  Similarity=0.153  Sum_probs=193.6

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  113 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v  113 (387)
                      -..+.|.. +|+.|+.|+..|.|..+|..++            +....+..-.  .|..+.|..+.+++|++- ...+.|
T Consensus       132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~------------~L~~Ei~v~E--tv~Dv~~LHneq~~AVAQ-K~y~yv  195 (545)
T KOG1272|consen  132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTK------------KLHFEINVME--TVRDVTFLHNEQFFAVAQ-KKYVYV  195 (545)
T ss_pred             CeeeeecC-CccEEEecCCccceeeeecccc------------eeeeeeehhh--hhhhhhhhcchHHHHhhh-hceEEE
Confidence            35677777 8999999999999999999998            5555555544  488999999999888875 578999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      ||-..                                         ..+..++.| ..|..+.|.|.- .+|++++..|.
T Consensus       196 YD~~G-----------------------------------------tElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~  232 (545)
T KOG1272|consen  196 YDNNG-----------------------------------------TELHCLKRH-IRVARLEFLPYH-FLLVAASEAGF  232 (545)
T ss_pred             ecCCC-----------------------------------------cEEeehhhc-Cchhhhcccchh-heeeecccCCc
Confidence            98652                                         112334444 568899999987 88999999999


Q ss_pred             EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC
Q 016547          194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  273 (387)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  273 (387)
                      ++.-|+.+++  .+..+....+.+..|+-+| -+..+-+|...|+|.+|....      ..++..+..|.++|.++++.+
T Consensus       233 L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~~  303 (545)
T KOG1272|consen  233 LKYQDVSTGK--LVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVDR  303 (545)
T ss_pred             eEEEeechhh--hhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEECC
Confidence            9999999998  5666667778899999999 888999999999999999988      888888989999999999999


Q ss_pred             CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceE
Q 016547          274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL  353 (387)
Q Consensus       274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i  353 (387)
                      +|+| +|+.+.|..++|||+++..+..               +... ..+...+++|..|  ++|        .|....|
T Consensus       304 ~G~Y-MaTtG~Dr~~kIWDlR~~~ql~---------------t~~t-p~~a~~ls~Sqkg--lLA--------~~~G~~v  356 (545)
T KOG1272|consen  304 GGRY-MATTGLDRKVKIWDLRNFYQLH---------------TYRT-PHPASNLSLSQKG--LLA--------LSYGDHV  356 (545)
T ss_pred             CCcE-EeecccccceeEeeeccccccc---------------eeec-CCCcccccccccc--cee--------eecCCee
Confidence            9997 4799999999999999864321               1111 2356778888655  342        2233589


Q ss_pred             EEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          354 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       354 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .||.=..........+... ..-.++|..+.|.|
T Consensus       357 ~iw~d~~~~s~~~~~pYm~-H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  357 QIWKDALKGSGHGETPYMN-HRCGGPVEDLRFCP  389 (545)
T ss_pred             eeehhhhcCCCCCCcchhh-hccCcccccceecc
Confidence            9996331100001111111 11234788888877

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.1e-16  Score=140.24  Aligned_cols=239  Identities=12%  Similarity=0.118  Sum_probs=153.5

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA  130 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~  130 (387)
                      .+|.+||.+..            .+ ..+..+.. .+.+..|+|||+.|+..+.+   ..|.+||+.++..         
T Consensus       184 ~~l~i~D~~g~------------~~-~~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---------  240 (433)
T PRK04922        184 YALQVADSDGY------------NP-QTILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---------  240 (433)
T ss_pred             EEEEEECCCCC------------Cc-eEeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------
Confidence            36888998654            22 33444544 57899999999999877643   4699999875422         


Q ss_pred             cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeE
Q 016547          131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK  208 (387)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~  208 (387)
                                                      ..+....+...+..|+|+|..++++.+.+|  .|++||+.+++   ..
T Consensus       241 --------------------------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~  285 (433)
T PRK04922        241 --------------------------------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LT  285 (433)
T ss_pred             --------------------------------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eE
Confidence                                            112222334457899999965556666655  59999998876   33


Q ss_pred             EeeccCCCeeEEEecCCCCCeEEEeeC-CCe--EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547          209 VEKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  285 (387)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d  285 (387)
                      .+..+.......+|+| +++.|+..+. +|.  |.++|+..      ++ ...+..+.......+|+|+|++++++...+
T Consensus       286 ~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~  357 (433)
T PRK04922        286 RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSG  357 (433)
T ss_pred             ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence            4445555567889999 8988887664 455  55555544      33 222322333455789999999866554433


Q ss_pred             C--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547          286 G--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  363 (387)
Q Consensus       286 ~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~  363 (387)
                      +  .|.+||+......                .+. +........|+|+|++++.+...     +..+.|.++++.    
T Consensus       358 ~~~~I~v~d~~~g~~~----------------~Lt-~~~~~~~p~~spdG~~i~~~s~~-----~g~~~L~~~~~~----  411 (433)
T PRK04922        358 GQYRIAVMDLSTGSVR----------------TLT-PGSLDESPSFAPNGSMVLYATRE-----GGRGVLAAVSTD----  411 (433)
T ss_pred             CceeEEEEECCCCCeE----------------ECC-CCCCCCCceECCCCCEEEEEEec-----CCceEEEEEECC----
Confidence            3  5899998764211                111 22234567899999988766532     223567888876    


Q ss_pred             cccchhhhhhhccCceEEEeeecC
Q 016547          364 RPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       364 ~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                         +.....+..+.+.+...+|+|
T Consensus       412 ---g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 ---GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ---CCceEEcccCCCCCCCCccCC
Confidence               444555655667788888887

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.3e-17  Score=144.09  Aligned_cols=223  Identities=12%  Similarity=0.089  Sum_probs=148.3

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      .+..|...+...+|+| +++.|+..+.+   ..|++||+.+++.          +.+..+.+|.    ..++|+|||+.|
T Consensus       198 ~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~----------~~l~~~~g~~----~~~~wSPDG~~L  262 (429)
T PRK01742        198 IVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGAR----------KVVASFRGHN----GAPAFSPDGSRL  262 (429)
T ss_pred             EeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCce----------EEEecCCCcc----CceeECCCCCEE
Confidence            3456788899999999 78888776543   4799999987721          1222233332    368999999988


Q ss_pred             EEec-CCCeEEEEEcC--CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          103 LSGG-KDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       103 ~s~~-~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      +.++ .+|.+.||.++  ++.                                         ...+..+...+....|+|
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~-----------------------------------------~~~lt~~~~~~~~~~wSp  301 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGT-----------------------------------------PSQLTSGAGNNTEPSWSP  301 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCC-----------------------------------------eEeeccCCCCcCCEEECC
Confidence            8764 68877776543  211                                         133344556678899999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      +|..+++++..+|...+|++....... ... .+..  ....|+| ++++++..+.++ +.+||+.+      +......
T Consensus       302 DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~------g~~~~lt  369 (429)
T PRK01742        302 DGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTS------GSTEVLS  369 (429)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCC------CCeEEec
Confidence            995556666678888999876533212 222 3333  4678999 999998888766 55589886      4433222


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                      ..+  ....+.|+|+|+.+ +.++.++.+.+|++.....             .....+..|.+.+...+|+|-
T Consensus       370 ~~~--~~~~~~~sPdG~~i-~~~s~~g~~~~l~~~~~~G-------------~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        370 STF--LDESPSISPNGIMI-IYSSTQGLGKVLQLVSADG-------------RFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCC--CCCCceECCCCCEE-EEEEcCCCceEEEEEECCC-------------CceEEccCCCCCCCCcccCCC
Confidence            222  23567899999965 5666788888887643111             235556678888899999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=4.7e-16  Score=136.44  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=154.2

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC---CCeEEEEEcCCCcCccccCCCcc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA  130 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~  130 (387)
                      ..|.+||.+..             ....+..|.. .+....|+|||+.|+..+.   +..|.+||+.++..         
T Consensus       182 ~~l~~~d~dg~-------------~~~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---------  238 (435)
T PRK05137        182 KRLAIMDQDGA-------------NVRYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---------  238 (435)
T ss_pred             eEEEEECCCCC-------------CcEEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------
Confidence            37888887654             2344555655 6889999999999887653   46899999975422         


Q ss_pred             cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeE
Q 016547          131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIK  208 (387)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~  208 (387)
                                                      ..+..+.+.+....|+|+|..++++.+.++.  |.+||+.+++   ..
T Consensus       239 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~  283 (435)
T PRK05137        239 --------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TT  283 (435)
T ss_pred             --------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eE
Confidence                                            2233345567788999999665667666665  7777887766   34


Q ss_pred             EeeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547          209 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  285 (387)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d  285 (387)
                      .+..+........|+| +++.++..+. +|  .|.++|+..      + ....+..+...+....|+|+|+.++.+....
T Consensus       284 ~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g------~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~  355 (435)
T PRK05137        284 RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG------S-NPRRISFGGGRYSTPVWSPRGDLIAFTKQGG  355 (435)
T ss_pred             EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC------C-CeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence            4555556677899999 8988887764 34  577777654      3 3344433445567789999999866554333


Q ss_pred             --CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCC--ceEEEEecCCC
Q 016547          286 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG--GTLQIWRMSDL  361 (387)
Q Consensus       286 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d--g~i~iw~~~~~  361 (387)
                        ..|.+||+......             .   +. ....+....|+|||+.++.+....    +.+  ..+.++++.  
T Consensus       356 ~~~~i~~~d~~~~~~~-------------~---lt-~~~~~~~p~~spDG~~i~~~~~~~----~~~~~~~L~~~dl~--  412 (435)
T PRK05137        356 GQFSIGVMKPDGSGER-------------I---LT-SGFLVEGPTWAPNGRVIMFFRQTP----GSGGAPKLYTVDLT--  412 (435)
T ss_pred             CceEEEEEECCCCceE-------------e---cc-CCCCCCCCeECCCCCEEEEEEccC----CCCCcceEEEEECC--
Confidence              35778887543111             1   11 112467789999999888765422    222  468888887  


Q ss_pred             cccccchhhhhhhccCceEEEeeecC
Q 016547          362 IYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          .+. ...+. ..+.+...+|+|
T Consensus       413 ----g~~-~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        413 ----GRN-EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             ----CCc-eEEcc-CCCCccCcccCC
Confidence                222 23333 234466677776

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.6e-15  Score=119.67  Aligned_cols=218  Identities=13%  Similarity=0.202  Sum_probs=143.4

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCC--eEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP--DLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      ....|+|++|-|.....|+.|+..| |.||..+...............+  +....+|  .+|+++.|.+||..+++++.
T Consensus       139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~  215 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASF  215 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeeccc
Confidence            4678999999998888999988876 99999876544333211111122  3334445  47999999999999999885


Q ss_pred             -CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          108 -DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       108 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                       |..|+|||..++....                                        ......+.++-+.|+||+ ..|+
T Consensus       216 gsssi~iWdpdtg~~~p----------------------------------------L~~~glgg~slLkwSPdg-d~lf  254 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIP----------------------------------------LIPKGLGGFSLLKWSPDG-DVLF  254 (445)
T ss_pred             CcceEEEEcCCCCCccc----------------------------------------ccccCCCceeeEEEcCCC-CEEE
Confidence             6789999998764321                                        112234678899999999 7788


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC---------ceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS---------PIN  257 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------~~~  257 (387)
                      .+.-|+..++|+..... ...+.. ...+.|..-+|+| +|++|+.... |.-++|.+.-........         ++.
T Consensus       255 aAt~davfrlw~e~q~w-t~erw~-lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~llia  330 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSW-TKERWI-LGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIA  330 (445)
T ss_pred             Eecccceeeeehhcccc-eeccee-ccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeec
Confidence            88999999999654433 122222 3445899999999 8876665543 344556655432211111         111


Q ss_pred             Eec-----c----ccceEEEEEEcCCCCeeEEEecCC--------CeEEEEeCCCC
Q 016547          258 KFE-----G----HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKV  296 (387)
Q Consensus       258 ~~~-----~----~~~~i~~~~~~~~~~~ll~s~~~d--------~~i~vwd~~~~  296 (387)
                      .+.     .    ..+.+.+++|.|.|.+|. +.-..        ..|.+||.+..
T Consensus       331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLa-v~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLA-VIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             cchhhhhhcCcccccCccceeeECCCCCEEE-EEEcCCchhhhhhhhhhhhccccc
Confidence            111     1    246788999999999864 43322        23677887763

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.8e-16  Score=138.49  Aligned_cols=287  Identities=13%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC---CEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---PYVLS  104 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~---~~l~s  104 (387)
                      ++-...+..++-.+++.+.++.... ..|.||...++            .++..+.+|.. +++.+.+.|..   .++++
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg------------~~i~~l~~~~a-~l~s~~~~~~~~~~~~~~~   77 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATG------------ECITSLEDHTA-PLTSVIVLPSSENANYLIV   77 (792)
T ss_pred             eccccceecccccccCCcEEEEeeC-CEEEEEecchH------------hhhhhcccccC-ccceeeecCCCccceEEEE
Confidence            3444444444434437777766554 58999999999            77788999998 68899988754   46789


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCccc----C----CCCCCceeccCCCC----------CCCCCCCCCCC--CCCCcee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAK----S----AGSSGSIIKQSPKP----------GDGNDKAADGP--SVGPRGI  164 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~  164 (387)
                      ++.||.|++||...+.....+......    .    .... .........          ...........  .......
T Consensus        78 ~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s-~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~  156 (792)
T KOG1963|consen   78 CSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADIS-ANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF  156 (792)
T ss_pred             EecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCcc-ceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence            999999999999887554443322111    0    0000 000000000          00000000000  0011111


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce--eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      +..|.. -.++.+++.+ . +.....+..+.+|+........  ...-..|.-.+++.+++| +++++|+|..||.|.+|
T Consensus       157 ~~~~~~-~~~I~~~~~g-e-~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw  232 (792)
T KOG1963|consen  157 LKEHQE-PKSIVDNNSG-E-FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVW  232 (792)
T ss_pred             hhhhcC-CccEEEcCCc-e-EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEE
Confidence            222322 4567788777 4 3344456789999987744111  112234667789999999 99999999999999999


Q ss_pred             EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547          243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  322 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (387)
                      .--...  ........+.-|...|++++|+++|.+|+ +|+.+|.+-+|.+.+.++.                -+..-.+
T Consensus       233 ~d~~~~--~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~kq----------------fLPRLgs  293 (792)
T KOG1963|consen  233 RDFGSS--DDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKKQ----------------FLPRLGS  293 (792)
T ss_pred             eccccc--cccccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCcc----------------cccccCC
Confidence            644311  11445677888999999999999999865 9999999999999986432                1233457


Q ss_pred             CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +|..+.++||+.+..+.+        .|+.|.+-.+.+
T Consensus       294 ~I~~i~vS~ds~~~sl~~--------~DNqI~li~~~d  323 (792)
T KOG1963|consen  294 PILHIVVSPDSDLYSLVL--------EDNQIHLIKASD  323 (792)
T ss_pred             eeEEEEEcCCCCeEEEEe--------cCceEEEEeccc
Confidence            899999999999887544        458999999873

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=1.4e-17  Score=141.32  Aligned_cols=259  Identities=16%  Similarity=0.219  Sum_probs=168.9

Q ss_pred             eeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE
Q 016547            3 LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL   82 (387)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~   82 (387)
                      +-.+...+.-|+.....   ....+.+|++.|.|++|+. +|+.+|+|+.|..|.+|+-.-.            .  ..-
T Consensus        28 ~lAAg~rlliyD~ndG~---llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE------------G--~Lk   89 (1081)
T KOG1538|consen   28 ILAAGSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE------------G--ILK   89 (1081)
T ss_pred             EEecCCEEEEEeCCCcc---cccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc------------c--eee
Confidence            34455666666655442   2345669999999999999 9999999999999999986433            0  111


Q ss_pred             eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc--CCCCCCceeccCCCCCCCCCCCCCCCCC-
Q 016547           83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSV-  159 (387)
Q Consensus        83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (387)
                      ..|.+ .|.|+.|+|-...|++|+- ...-+|..+..............  .-..++...  ..+..++.+.+.+.... 
T Consensus        90 YSH~D-~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyl--alG~~nGTIsiRNk~gEe  165 (1081)
T KOG1538|consen   90 YSHND-AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYL--ALGMFNGTISIRNKNGEE  165 (1081)
T ss_pred             eccCC-eeeEeecCchHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEE--EEeccCceEEeecCCCCc
Confidence            23444 5677777777777777663 24556665543221111110000  011111111  11222333333322221 


Q ss_pred             -CCceeecCCCCCeEEEEEccCC----CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547          160 -GPRGIYNGHEDTVEDVTFCPSS----AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  234 (387)
Q Consensus       160 -~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (387)
                       ..+..-.+..++|.+++|+|..    ...+++.....++.+|.+....   +.....-.-...|+.+.+ +|.+++.|+
T Consensus       166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---Igk~r~L~FdP~CisYf~-NGEy~LiGG  241 (1081)
T KOG1538|consen  166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---IGKDRALNFDPCCISYFT-NGEYILLGG  241 (1081)
T ss_pred             ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---ecccccCCCCchhheecc-CCcEEEEcc
Confidence             1222334577899999999874    2467788888888888876433   222233344567999999 999999999


Q ss_pred             CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          235 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       235 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .|+.+++|-..       +..+.++...+..|..++..|++++ ++.|+.||+|..|++-.
T Consensus       242 sdk~L~~fTR~-------GvrLGTvg~~D~WIWtV~~~PNsQ~-v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  242 SDKQLSLFTRD-------GVRLGTVGEQDSWIWTVQAKPNSQY-VVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CCCceEEEeec-------CeEEeeccccceeEEEEEEccCCce-EEEEEccCeeehhhhHH
Confidence            99999999655       7777787778899999999999997 57899999999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=7e-16  Score=134.66  Aligned_cols=226  Identities=10%  Similarity=0.060  Sum_probs=141.8

Q ss_pred             EeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      +..+.. .+.+.+|+|||+.|+..+.+   ..|.+||+.++..                                     
T Consensus       191 l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-------------------------------------  232 (427)
T PRK02889        191 ALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-------------------------------------  232 (427)
T ss_pred             eccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-------------------------------------
Confidence            444554 57899999999999876643   3599999976432                                     


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEcc--CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-  235 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-  235 (387)
                          ..+....+.+....|+|+|..++++.+.+|...+|.+.  .+.   ...+..+........|+| +++.|+..+. 
T Consensus       233 ----~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~  304 (427)
T PRK02889        233 ----RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSP-DGRSIYFTSDR  304 (427)
T ss_pred             ----EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcC-CCCEEEEEecC
Confidence                11222234456789999995555677888887776654  333   334444555567789999 8988776654 


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCcee
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGL  313 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~  313 (387)
                      +|...+|.+....    +. ...+..........+|+|+|++++.+...++  .|.+||+......              
T Consensus       305 ~g~~~Iy~~~~~~----g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--------------  365 (427)
T PRK02889        305 GGAPQIYRMPASG----GA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--------------  365 (427)
T ss_pred             CCCcEEEEEECCC----Cc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--------------
Confidence            5677777765321    22 2222222233446789999998654443333  6999999874221              


Q ss_pred             eeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          314 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       314 ~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                        .+.. ........|+|+++.++.+....    + ...+.+.++.       +.....+..+.+.+...+|+|
T Consensus       366 --~lt~-~~~~~~p~~spdg~~l~~~~~~~----g-~~~l~~~~~~-------g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        366 --ALTD-TTRDESPSFAPNGRYILYATQQG----G-RSVLAAVSSD-------GRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             --EccC-CCCccCceECCCCCEEEEEEecC----C-CEEEEEEECC-------CCceEEeecCCCCCCCCccCC
Confidence              1111 12346789999999988765432    1 2345555554       445555556667788888887

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=5.5e-18  Score=147.01  Aligned_cols=223  Identities=19%  Similarity=0.351  Sum_probs=168.9

Q ss_pred             eEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           79 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        79 ~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      +..+.+|.. +|+|..|...|.++++|+.|..++||.+++..                                      
T Consensus       183 ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--------------------------------------  223 (1113)
T KOG0644|consen  183 IKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--------------------------------------  223 (1113)
T ss_pred             HHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchh--------------------------------------
Confidence            345778887 79999999999999999999999999987643                                      


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  238 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  238 (387)
                        ++....+|.+.|+.++.+.++ .++++++.|..|++|.+..+.  .+..+.+|.+.|++++|+| ..    +.+.||+
T Consensus       224 --~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP-~~----sss~dgt  293 (1113)
T KOG0644|consen  224 --CLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSP-RA----SSSDDGT  293 (1113)
T ss_pred             --hhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCc-cc----cCCCCCc
Confidence              336678999999999999887 889999999999999999988  6778889999999999999 33    7789999


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      +++||.+-........+ ..+. ...-+.++.|..++.. +++++.|+.-..|.+...                     .
T Consensus       294 ~~~wd~r~~~~~y~prp-~~~~-~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l---------------------~  349 (1113)
T KOG0644|consen  294 CRIWDARLEPRIYVPRP-LKFT-EKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQL---------------------A  349 (1113)
T ss_pred             eEeccccccccccCCCC-CCcc-cccceeeeeccccccc-cccccCCcccccchhhHh---------------------h
Confidence            99999982110000011 1111 1245667777777775 679999999988887653                     2


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .+...+.-+.++.+-..+.+       +.-.+-.+++|++.      ++.+++.+.+|.+.+..+.|||
T Consensus       350 ~~~~~lif~t~ssd~~~~~~-------~ar~~~~~~vwnl~------~g~l~H~l~ghsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  350 WRSNLLIFVTRSSDLSSIVV-------TARNDHRLCVWNLY------TGQLLHNLMGHSDEVYVLDVHP  405 (1113)
T ss_pred             hhccceEEEeccccccccce-------eeeeeeEeeeeecc------cchhhhhhcccccceeeeeecC
Confidence            22222222223323223333       33444799999999      8999999999999999999998

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2e-14  Score=113.80  Aligned_cols=197  Identities=15%  Similarity=0.206  Sum_probs=142.9

Q ss_pred             cEEEEEecCCCCcEEEEecCC--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           33 EVNRIRELPQNTKIVATHTDS--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      .|--+-|+.   .++|..+.+  +.+++.+++..            ..+..+.-.+  .|.++.++  .++|+++-.+ .
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~------------~~ICe~~fpt--~IL~VrmN--r~RLvV~Lee-~  107 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK------------TTICEIFFPT--SILAVRMN--RKRLVVCLEE-S  107 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccC------------ceEEEEecCC--ceEEEEEc--cceEEEEEcc-c
Confidence            345555654   455555443  34888888776            4455554444  47788884  4677777754 5


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE-e-
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS-V-  188 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~-  188 (387)
                      |.|||+++.+.....                                     .....+...+.++..++.+ .+++- + 
T Consensus       108 IyIydI~~MklLhTI-------------------------------------~t~~~n~~gl~AlS~n~~n-~ylAyp~s  149 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTI-------------------------------------ETTPPNPKGLCALSPNNAN-CYLAYPGS  149 (391)
T ss_pred             EEEEecccceeehhh-------------------------------------hccCCCccceEeeccCCCC-ceEEecCC
Confidence            999999865433221                                     2223345556666666665 45554 2 


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEEeccCCCCCCCCceEEeccc--cce
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGH--SAA  265 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~--~~~  265 (387)
                      ...|.|.+||..+-+  ....+..|.+++-+++|++ +|.+||+++..|+ ||+|.+.+      ++.+.+|+.-  ...
T Consensus       150 ~t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~  220 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVS  220 (391)
T ss_pred             CCCceEEEEEcccce--eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeE
Confidence            356899999998877  5677789999999999999 9999999999996 79999988      8899988632  346


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      |.+++|+|++++ |++.+..++|+||.+....
T Consensus       221 IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  221 IYSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            899999999996 5677889999999998754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.74  E-value=5.4e-16  Score=119.25  Aligned_cols=158  Identities=20%  Similarity=0.374  Sum_probs=110.0

Q ss_pred             EEEEEccCCCeeEEEecC---------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe--eCCCeEEE
Q 016547          173 EDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRM  241 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~~  241 (387)
                      -.+.|+|+|..+++....         -+...+|.++....+.........++|.+++|+| +++.|++.  ..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            467899999665555541         2346666665544333333333456799999999 88876554  45789999


Q ss_pred             EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      ||++       .+.+..+.  ...++.+.|+|+|++++++|  ...|.|.+||+++.               ..+... .
T Consensus        88 yd~~-------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~---------------~~i~~~-~  142 (194)
T PF08662_consen   88 YDVK-------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK---------------KKISTF-E  142 (194)
T ss_pred             EcCc-------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC---------------EEeecc-c
Confidence            9997       57777775  46778999999999765444  23578999999964               223222 2


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      | ..++.++|+|+|++++.+.+.-  --..|+.++||++.
T Consensus       143 ~-~~~t~~~WsPdGr~~~ta~t~~--r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  143 H-SDATDVEWSPDGRYLATATTSP--RLRVDNGFKIWSFQ  179 (194)
T ss_pred             c-CcEEEEEEcCCCCEEEEEEecc--ceeccccEEEEEec
Confidence            3 3578999999999998765432  23467999999998

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.74  E-value=3.3e-16  Score=122.66  Aligned_cols=302  Identities=15%  Similarity=0.225  Sum_probs=181.3

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----------CceEEEEECCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPT   98 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~~v~~~~~~~~   98 (387)
                      ..+-|.++.|.. .|++||||..+|.|.++.-+.....       .......++.|..           ..|+.+.|.++
T Consensus        24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~-------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKG-------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD   95 (433)
T ss_pred             hhcceeeEEeec-ccceEeecCCCCeEEEeeccccccc-------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence            457789999998 9999999999999999976554220       1122223333321           24788999987


Q ss_pred             CC--EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCc-eeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEE
Q 016547           99 EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS-IIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVED  174 (387)
Q Consensus        99 ~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~  174 (387)
                      ++  .++....|++|++|.+................+..... +........+      ......+.+.+ ..|+-.|++
T Consensus        96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~------~~vea~prRv~aNaHtyhiNS  169 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD------LEVEASPRRVYANAHTYHINS  169 (433)
T ss_pred             CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc------ceeeeeeeeeccccceeEeee
Confidence            65  45556679999999998654433111111111111110 1000000000      01111223333 468889999


Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeecc-----CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      +.++.|. ..++++ .|-.|.+|+++-..... +...+++     ..-|++..|+|...+.|+-.+..|+|++.|+|...
T Consensus       170 IS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  170 ISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            9999998 666665 67899999987644211 2222222     23578899999888999999999999999999521


Q ss_pred             CCCCCCceE----------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          249 SNGVGSPIN----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       249 ~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      -......+.          -+..--..|..+.|+++|++++ +-. --+|++||+....++....+.......++.. +.
T Consensus       248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~-lY  324 (433)
T KOG1354|consen  248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS-LY  324 (433)
T ss_pred             hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHHHHHHH-Hh
Confidence            000000011          1111224688999999999865 442 4789999998766554322211100000000 00


Q ss_pred             cCCCC---eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          319 GHRDK---VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       319 ~~~~~---v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                       -.+.   -..++|+-++.+++        ||+..+.++++++.
T Consensus       325 -EnD~IfdKFec~~sg~~~~v~--------TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  325 -ENDAIFDKFECSWSGNDSYVM--------TGSYNNVFRVFNLA  359 (433)
T ss_pred             -hccchhheeEEEEcCCcceEe--------cccccceEEEecCC
Confidence             0112   25678998888888        99999999999965

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=5.8e-15  Score=117.67  Aligned_cols=262  Identities=11%  Similarity=0.104  Sum_probs=180.4

Q ss_pred             cCCCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           29 IHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        29 ~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .-...|..++|.-+ ..+.+...+.|..+..+.++..+......      ........+. .|..++.  ....|++|-.
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~------~~~~~~l~~~-~I~gl~~--~dg~Litc~~  123 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD------DAKTVSLGTK-SIKGLKL--ADGTLITCVS  123 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc------cccccccccc-cccchhh--cCCEEEEEec
Confidence            34556677776642 23345444466667777766653222110      0111222222 3444443  2447888888


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      +|.+.+|..+.+...                                    ..++..+..+ .++..+.-++..+.++++
T Consensus       124 sG~l~~~~~k~~d~h------------------------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~  166 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLH------------------------------------SSKLIKLATG-PGLYDVRQTDTDPYIVAT  166 (412)
T ss_pred             CCcEEEEeccCCccc------------------------------------cccceeeecC-CceeeeccCCCCCceEec
Confidence            999999998754211                                    1111223333 456777777777788888


Q ss_pred             ecCC--CeEEEEEccCCCCceeEEeec---------cCCCeeEEEecCCC--CCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          188 VGDD--SCLILWDARVGTSPVIKVEKA---------HDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       188 ~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      |+..  ..+.+||+...++  +..-..         -.-.++.+.|-+ .  ...|++++.-+.+++||.+..     .+
T Consensus       167 GGke~~n~lkiwdle~~~q--iw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q-----RR  238 (412)
T KOG3881|consen  167 GGKENINELKIWDLEQSKQ--IWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ-----RR  238 (412)
T ss_pred             Cchhcccceeeeeccccee--eeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc-----Cc
Confidence            9999  8999999988742  111110         122467888888 6  899999999999999999974     68


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      ++.++.-.+.+|+++...|++.++ .+|..-|.+..||++.....              ...+.+-.+.|.++..+|..+
T Consensus       239 PV~~fd~~E~~is~~~l~p~gn~I-y~gn~~g~l~~FD~r~~kl~--------------g~~~kg~tGsirsih~hp~~~  303 (412)
T KOG3881|consen  239 PVAQFDFLENPISSTGLTPSGNFI-YTGNTKGQLAKFDLRGGKLL--------------GCGLKGITGSIRSIHCHPTHP  303 (412)
T ss_pred             ceeEeccccCcceeeeecCCCcEE-EEecccchhheecccCceee--------------ccccCCccCCcceEEEcCCCc
Confidence            899998889999999999999975 58888999999999985221              223677889999999999988


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                      +++        ++|-|..|||+|+.      +.+++...
T Consensus       304 ~la--------s~GLDRyvRIhD~k------trkll~kv  328 (412)
T KOG3881|consen  304 VLA--------SCGLDRYVRIHDIK------TRKLLHKV  328 (412)
T ss_pred             eEE--------eeccceeEEEeecc------cchhhhhh
Confidence            777        77888999999999      55665543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=4e-16  Score=121.55  Aligned_cols=284  Identities=14%  Similarity=0.260  Sum_probs=174.2

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-E
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l  102 (387)
                      .++++..-+.|.-+.|..+.-.+|.....|+.|.+|++...            .-...+..-.. .+.++.|+|||+. |
T Consensus        41 ~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------------ew~ckIdeg~a-gls~~~WSPdgrhiL  107 (447)
T KOG4497|consen   41 LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------------EWYCKIDEGQA-GLSSISWSPDGRHIL  107 (447)
T ss_pred             HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc------------eeEEEeccCCC-cceeeeECCCcceEe
Confidence            33444445778888998855556667788999999999887            44445555555 4789999999965 5


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCccc---CCCCCCceec-cCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIK-QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      .+...|-.|.+|.+.+........+....   ....++.... .........+.+........+..+.-.+-..+++.|+
T Consensus       108 ~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs  187 (447)
T KOG4497|consen  108 LTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS  187 (447)
T ss_pred             eeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence            56778999999999887554333332221   1111111111 1111111222222233344445555566778899999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC----------
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT----------  248 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----------  248 (387)
                      ||| +.++         +||---.-  .+. .....-.+..++|+| .+++|++|+.|+.+|+.+--+-+          
T Consensus       188 Pdg-~~la---------Vwd~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s  253 (447)
T KOG4497|consen  188 PDG-NWLA---------VWDNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS  253 (447)
T ss_pred             CCC-cEEE---------Eecchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence            998 5554         46532221  111 112335688999999 99999999999999886632200          


Q ss_pred             ---------------------------CCC-----------------CCCceEEec------cccceEEEEEEcCCCCee
Q 016547          249 ---------------------------SNG-----------------VGSPINKFE------GHSAAVLCVQWSPDKSSV  278 (387)
Q Consensus       249 ---------------------------~~~-----------------~~~~~~~~~------~~~~~i~~~~~~~~~~~l  278 (387)
                                                 +..                 ....+..++      .....+.-++|++|..+ 
T Consensus       254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-  332 (447)
T KOG4497|consen  254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-  332 (447)
T ss_pred             ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-
Confidence                                       000                 000011111      12235677999999986 


Q ss_pred             EEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          279 FGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       279 l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      +|+-.+  -+.+.+||++..+                +...-....+|....|+|..+.|++..+        ...+++|
T Consensus       333 ~aTrnd~~PnalW~Wdlq~l~----------------l~avLiQk~piraf~WdP~~prL~vctg--------~srLY~W  388 (447)
T KOG4497|consen  333 AATRNDKYPNALWLWDLQNLK----------------LHAVLIQKHPIRAFEWDPGRPRLVVCTG--------KSRLYFW  388 (447)
T ss_pred             EeeecCCCCceEEEEechhhh----------------hhhhhhhccceeEEEeCCCCceEEEEcC--------CceEEEE
Confidence            455432  2569999999852                2222345568999999999998885432        2579999


Q ss_pred             ecC
Q 016547          357 RMS  359 (387)
Q Consensus       357 ~~~  359 (387)
                      ...
T Consensus       389 ~ps  391 (447)
T KOG4497|consen  389 APS  391 (447)
T ss_pred             cCC
Confidence            877

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=1.5e-16  Score=131.68  Aligned_cols=178  Identities=17%  Similarity=0.332  Sum_probs=135.8

Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeE--EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIK--VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------  250 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------  250 (387)
                      |.+ .-++.|-.-|.|.+.|....+...+.  ........++++.|-|.+...++++-.+|.+++||.......      
T Consensus       183 ~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            444 55778888899999987764311111  111234789999999978889999999999999987542110      


Q ss_pred             ----------------CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          251 ----------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       251 ----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                                      ....++..+.--++.|+.++|+|||++ ||+.+.||.+||||+.+.               .++
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~---------------eLl  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQ---------------ELL  325 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHH---------------HHH
Confidence                            001233333334567999999999996 689999999999999874               233


Q ss_pred             eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .....--+...+++|+|||+|++        +||.|-.|.||.+.      .++.+..=++|++.|..|+|-|
T Consensus       326 g~mkSYFGGLLCvcWSPDGKyIv--------tGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  326 GVMKSYFGGLLCVCWSPDGKYIV--------TGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHhhccceEEEEEcCCccEEE--------ecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence            33444557899999999999999        99999999999999      7889999999999999999976

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.71  E-value=2.2e-15  Score=118.11  Aligned_cols=217  Identities=16%  Similarity=0.271  Sum_probs=151.3

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+..||.+.|++...-| ..+-+++.+.|.+++||--.+..           +.-..+....-.+++++.+.++...|+
T Consensus        17 l~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~-----------q~wpsI~~~mP~~~~~~~y~~e~~~L~   84 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSG-----------QYWPSIYHYMPSPCSAMEYVSESRRLY   84 (404)
T ss_pred             hhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEecccc-----------ccCchhhhhCCCCceEeeeeccceEEE
Confidence            345668999999988888 56678899999999999644331           111112112223578999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      .|-..|++.-+.+..--..                                    ....+.+..|...+..+-|+... .
T Consensus        85 vg~~ngtvtefs~sedfnk------------------------------------m~~~r~~~~h~~~v~~~if~~~~-e  127 (404)
T KOG1409|consen   85 VGQDNGTVTEFALSEDFNK------------------------------------MTFLKDYLAHQARVSAIVFSLTH-E  127 (404)
T ss_pred             EEEecceEEEEEhhhhhhh------------------------------------cchhhhhhhhhcceeeEEecCCc-e
Confidence            9999999998877532111                                    11112233344444443333322 2


Q ss_pred             eEE---------------------------------------EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecC
Q 016547          184 EFC---------------------------------------SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP  224 (387)
Q Consensus       184 ~l~---------------------------------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (387)
                      .++                                       .|...|.|.+-.+.....+.+..+.+|...+++++|.|
T Consensus       128 ~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~  207 (404)
T KOG1409|consen  128 WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP  207 (404)
T ss_pred             eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC
Confidence            233                                       33344445544444444456778889999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       225 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                       ....|.+|..|..+.+||+--.     .....++.+|...|..+...+--+.+ .+++.||.|.+||+...
T Consensus       208 -~~~~LfSg~~d~~vi~wdigg~-----~g~~~el~gh~~kV~~l~~~~~t~~l-~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  208 -GQRLLFSGASDHSVIMWDIGGR-----KGTAYELQGHNDKVQALSYAQHTRQL-ISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             -CCcEEEeccccCceEEEeccCC-----cceeeeeccchhhhhhhhhhhhheee-eeccCCCeEEEEeccce
Confidence             8999999999999999999853     34566788899999998888777754 58999999999999864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=3.4e-17  Score=133.00  Aligned_cols=192  Identities=16%  Similarity=0.270  Sum_probs=158.7

Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      +.+.++.+|++|+.|+..|.|..+|..+........                                         -..
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------------------------------v~E  171 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------------------------------VME  171 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------------------------------hhh
Confidence            588999999999999999999999998754322211                                         135


Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      .|.++.|..+. ++|++ .....++|||-..-+   +..+.. ...|..+.|-| ..-+|++++..|.++.-|+.+    
T Consensus       172 tv~Dv~~LHne-q~~AV-AQK~y~yvYD~~GtE---lHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~----  240 (545)
T KOG1272|consen  172 TVRDVTFLHNE-QFFAV-AQKKYVYVYDNNGTE---LHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVST----  240 (545)
T ss_pred             hhhhhhhhcch-HHHHh-hhhceEEEecCCCcE---Eeehhh-cCchhhhcccc-hhheeeecccCCceEEEeech----
Confidence            68888998765 55555 467899999965444   444443 35789999999 888999999999999999999    


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                        ++.+.++..-.+.+..+.-+|-+. ++-.|..+|+|.+|.....               ..+..+..|.++|.++++.
T Consensus       241 --GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk---------------ePLvKiLcH~g~V~siAv~  302 (545)
T KOG1272|consen  241 --GKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK---------------EPLVKILCHRGPVSSIAVD  302 (545)
T ss_pred             --hhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCc---------------chHHHHHhcCCCcceEEEC
Confidence              999999988888999999999887 6778999999999998874               2355667899999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ++|.|++        |.|.|..++|||++.
T Consensus       303 ~~G~YMa--------TtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  303 RGGRYMA--------TTGLDRKVKIWDLRN  324 (545)
T ss_pred             CCCcEEe--------ecccccceeEeeecc
Confidence            9999998        899999999999994

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=7.2e-15  Score=114.67  Aligned_cols=270  Identities=12%  Similarity=0.137  Sum_probs=172.0

Q ss_pred             EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ecCCCeEEEEE
Q 016547           37 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GGKDKSVVLWS  115 (387)
Q Consensus        37 i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd  115 (387)
                      .+|+| +++++|+++.- .+.|=|.++.            +..+.+.--.  .|.-+.|..|..+++. ...|+.|.+|+
T Consensus        14 c~fSp-~g~yiAs~~~y-rlviRd~~tl------------q~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   14 CSFSP-CGNYIASLSRY-RLVIRDSETL------------QLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             eeECC-CCCeeeeeeee-EEEEeccchh------------hHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEE
Confidence            45788 99999998766 7888888776            2222222222  3567899988877654 56788999999


Q ss_pred             cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEE
Q 016547          116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI  195 (387)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  195 (387)
                      +....-.                                        ..+.....++..++|+|+|+.++.+...+-.|.
T Consensus        78 l~Qpew~----------------------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriT  117 (447)
T KOG4497|consen   78 LVQPEWY----------------------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT  117 (447)
T ss_pred             eecceeE----------------------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence            9754322                                        334455678999999999988888899999999


Q ss_pred             EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------------------------------------CeE
Q 016547          196 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------------------------------------NSV  239 (387)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------------------------------------g~i  239 (387)
                      +|.+.+.+   ...++-....+..++|+| ++++.+.+++-                                    +.+
T Consensus       118 VWSL~t~~---~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l  193 (447)
T KOG4497|consen  118 VWSLNTQK---GYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL  193 (447)
T ss_pred             EEEeccce---eEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence            99998877   223333345568889999 88888877642                                    223


Q ss_pred             EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC---------------
Q 016547          240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP---------------  304 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~---------------  304 (387)
                      .+||.--      .-.+..++ .+-.+..++|+|.+++ ++.|+.|+.+||.+--+.+...+...               
T Consensus       194 aVwd~~L------eykv~aYe-~~lG~k~v~wsP~~qf-lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  194 AVWDNVL------EYKVYAYE-RGLGLKFVEWSPCNQF-LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             EEecchh------hheeeeee-eccceeEEEeccccce-EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence            3333221      11111111 2356889999999985 78999999998865332211111000               


Q ss_pred             ----------------CC-------CC-------CCceeeee------eccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          305 ----------------RT-------TN-------YPAGLFFQ------HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       305 ----------------~~-------~~-------~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                                      ..       ..       ..+..+..      +......+.-++|++|..+++. -     .-.
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT-r-----nd~  339 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT-R-----NDK  339 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee-e-----cCC
Confidence                            00       00       00001111      1122346788999998876552 2     223


Q ss_pred             CCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          349 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .-+.+-+||++      .-+ +..+-....+|.+..|.|
T Consensus       340 ~PnalW~Wdlq------~l~-l~avLiQk~piraf~WdP  371 (447)
T KOG4497|consen  340 YPNALWLWDLQ------NLK-LHAVLIQKHPIRAFEWDP  371 (447)
T ss_pred             CCceEEEEech------hhh-hhhhhhhccceeEEEeCC
Confidence            55899999999      333 344444677888888876

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=3.5e-14  Score=110.34  Aligned_cols=239  Identities=14%  Similarity=0.205  Sum_probs=149.8

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCC-----
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKD-----  108 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d-----  108 (387)
                      ..++|+. +...++.|.++| .+||+.+-.+..            ...+.+.++ +.-+...-..++|+ .|+.+     
T Consensus         9 lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~------------~~r~~~~~G-~~~veMLfR~N~laLVGGg~~pky~   73 (346)
T KOG2111|consen    9 LSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKES------------ASRQFIDGG-FKIVEMLFRSNYLALVGGGSRPKYP   73 (346)
T ss_pred             eEEEEcc-CCceEEEEecCc-eEEEecCchhhh------------hhhccccCc-hhhhhHhhhhceEEEecCCCCCCCC
Confidence            4488888 778898988887 899998765221            111112211 11112222344443 34333     


Q ss_pred             -CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          109 -KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       109 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                       ..|.|||=....                                        ++..+ ....+|.++.+.++.   +++
T Consensus        74 pNkviIWDD~k~~----------------------------------------~i~el-~f~~~I~~V~l~r~r---iVv  109 (346)
T KOG2111|consen   74 PNKVIIWDDLKER----------------------------------------CIIEL-SFNSEIKAVKLRRDR---IVV  109 (346)
T ss_pred             CceEEEEecccCc----------------------------------------EEEEE-EeccceeeEEEcCCe---EEE
Confidence             479999933221                                        11222 235789999998763   444


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      . ..+.|++|...+.-+ .+..+..  .+....+++-.. ...+||. |-.-|.|+|-|+....    ......+.+|.+
T Consensus       110 v-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~----~~~p~~I~AH~s  182 (346)
T KOG2111|consen  110 V-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLASTK----PNAPSIINAHDS  182 (346)
T ss_pred             E-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhcC----cCCceEEEcccC
Confidence            3 467899999874332 2333322  223333333332 3334443 3456999999998732    113578889999


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      .|.|++.+-+|. ++|++|..|+ |||||..++....+            +. .......|.+|+|||+..+|+      
T Consensus       183 ~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E------------~R-RG~d~A~iy~iaFSp~~s~La------  242 (346)
T KOG2111|consen  183 DIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQE------------LR-RGVDRADIYCIAFSPNSSWLA------  242 (346)
T ss_pred             ceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeee------------ee-cCCchheEEEEEeCCCccEEE------
Confidence            999999999999 6899999998 89999998644322            11 112345799999999998877      


Q ss_pred             CCCCCCCceEEEEecCCC
Q 016547          344 CDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~  361 (387)
                        +.+..|+|+||.+.+.
T Consensus       243 --vsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  243 --VSSDKGTLHIFSLRDT  258 (346)
T ss_pred             --EEcCCCeEEEEEeecC
Confidence              3445599999999863

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.1e-13  Score=106.11  Aligned_cols=179  Identities=20%  Similarity=0.368  Sum_probs=126.8

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC-cCccccCCCcccC
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-ITSSATDPATAKS  132 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~~  132 (387)
                      ..|.|||=...            +++.++.-..  +|.++.+.++  .|++.- .+.|.||.+.+. +.....+      
T Consensus        75 NkviIWDD~k~------------~~i~el~f~~--~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e------  131 (346)
T KOG2111|consen   75 NKVIIWDDLKE------------RCIIELSFNS--EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE------  131 (346)
T ss_pred             ceEEEEecccC------------cEEEEEEecc--ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee------
Confidence            47999993333            5666665554  5889999764  455554 679999998743 1111110      


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-eeEE-EecCCCeEEEEEccCCCCceeEEe
Q 016547          133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFC-SVGDDSCLILWDARVGTSPVIKVE  210 (387)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~~~~~~~  210 (387)
                                                     +. ......  ++..|..+ .+|+ -|-.-|.|.|-|+...+.......
T Consensus       132 -------------------------------t~-~NPkGl--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I  177 (346)
T KOG2111|consen  132 -------------------------------TR-SNPKGL--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII  177 (346)
T ss_pred             -------------------------------cc-cCCCce--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE
Confidence                                           00 111112  22333222 2232 245679999999988764234677


Q ss_pred             eccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEEeccCCCCCCCCceEEecc--ccceEEEEEEcCCCCeeEEEecCCCe
Q 016547          211 KAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGL  287 (387)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ll~s~~~d~~  287 (387)
                      .+|.+.|.|++.+- +|.++|++|..|+ |||||..+      +.++.+++.  ....|.+++|||+..+ ||++|+.|+
T Consensus       178 ~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgT  249 (346)
T KOG2111|consen  178 NAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGT  249 (346)
T ss_pred             EcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCe
Confidence            89999999999999 9999999999997 89999999      899998862  3457999999999995 689999999


Q ss_pred             EEEEeCCCCC
Q 016547          288 LNIWDYEKVG  297 (387)
Q Consensus       288 i~vwd~~~~~  297 (387)
                      ++||.++...
T Consensus       250 lHiF~l~~~~  259 (346)
T KOG2111|consen  250 LHIFSLRDTE  259 (346)
T ss_pred             EEEEEeecCC
Confidence            9999998743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3.9e-14  Score=123.63  Aligned_cols=219  Identities=13%  Similarity=0.114  Sum_probs=137.6

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEec---CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHT---DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+.+...+|+| +++.|+..+   .+..|.+|++.+++.          +.+..+.++    +....|+|||+.|+.
T Consensus       195 t~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~----------~~l~~~~~~----~~~~~~SPDG~~La~  259 (429)
T PRK03629        195 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRH----NGAPAFSPDGSKLAF  259 (429)
T ss_pred             ecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEccCCCCC----cCCeEECCCCCEEEE
Confidence            34667899999999 777777543   245799999987721          111122232    346899999998875


Q ss_pred             e-cCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          105 G-GKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       105 ~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      . +.+|  .|.+||++++..                                         ..+..+...+....|+|+|
T Consensus       260 ~~~~~g~~~I~~~d~~tg~~-----------------------------------------~~lt~~~~~~~~~~wSPDG  298 (429)
T PRK03629        260 ALSKTGSLNLYVMDLASGQI-----------------------------------------RQVTDGRSNNTEPTWFPDS  298 (429)
T ss_pred             EEcCCCCcEEEEEECCCCCE-----------------------------------------EEccCCCCCcCceEECCCC
Confidence            4 4444  588888865321                                         1222233456788999999


Q ss_pred             CeeEEEecCCCeEEEE--EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCCce
Q 016547          182 AQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~  256 (387)
                      ..++++...++...+|  |+..++   ...+...........|+| ++++++..+.+   ..|.+||+.+      +. .
T Consensus       299 ~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~------g~-~  367 (429)
T PRK03629        299 QNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT------GG-V  367 (429)
T ss_pred             CEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC------CC-e
Confidence            4444454445554555  665554   223333344566789999 99888876654   3588888876      43 2


Q ss_pred             EEeccccceEEEEEEcCCCCeeEEEecCCCe---EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL---LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      ..+.. ........|+|||+.++.++ .++.   +.++++...                ....+.+|.+.+...+|+|
T Consensus       368 ~~Lt~-~~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G~----------------~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        368 QVLTD-TFLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDGR----------------FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEeCC-CCCCCCceECCCCCEEEEEE-cCCCceEEEEEECCCC----------------CeEECccCCCCcCCcccCC
Confidence            33332 12234678999999765444 4443   667777542                2334566778888899987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.2e-14  Score=125.80  Aligned_cols=222  Identities=12%  Similarity=0.120  Sum_probs=139.2

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ++..|...+.+.+|+| +++.|+..+.   +..|.+||+.+++            . ..+....+ ...+..|+|||+.|
T Consensus       198 ~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SpDG~~l  262 (433)
T PRK04922        198 TILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQ------------R-ELVASFRG-INGAPSFSPDGRRL  262 (433)
T ss_pred             EeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCC------------E-EEeccCCC-CccCceECCCCCEE
Confidence            3446778899999999 7777777653   3469999998772            2 12223332 34578999999977


Q ss_pred             E-EecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          103 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       103 ~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      + +.+.+|  .|.+||+.++..                                         ..+..+.......+|+|
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~-----------------------------------------~~lt~~~~~~~~~~~sp  301 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL-----------------------------------------TRLTNHFGIDTEPTWAP  301 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe-----------------------------------------EECccCCCCccceEECC
Confidence            5 445555  588888875421                                         22233334456789999


Q ss_pred             CCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEeccCCCCCCCC
Q 016547          180 SSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       180 ~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~  254 (387)
                      ++..++++...+|.  |.++|+.+++.   ..+..+.......+|+| ++++++..+.++   .|.+||+.+      ++
T Consensus       302 DG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~------g~  371 (433)
T PRK04922        302 DGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST------GS  371 (433)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCe---EEeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC------CC
Confidence            99444445445555  66667666552   22222334455789999 999888766543   689999876      44


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCC--CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      .. .+. +........|+|+|++++.+....  +.|.++++...                ....+..+.+.+...+|+|
T Consensus       372 ~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----------------~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        372 VR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----------------VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEEcccCCCCCCCCccCC
Confidence            33 333 222345679999999876555433  35777777542                1222334455667777876

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.2e-15  Score=123.67  Aligned_cols=267  Identities=18%  Similarity=0.274  Sum_probs=179.1

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCce-EEEEECCCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEP  100 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~~~~~~  100 (387)
                      ++.++.++|+..-+.|..+|+...++|||..-..|++||+...              ...+.-|.+..+ .-.-++-|-.
T Consensus        42 ieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL--------------SLKFERhlDae~V~feiLsDD~S  107 (703)
T KOG2321|consen   42 IELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL--------------SLKFERHLDAEVVDFEILSDDYS  107 (703)
T ss_pred             HHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc--------------eeeeeecccccceeEEEeccchh
Confidence            4456778899999999999955556788999999999999876              234555655433 3333343444


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .++.--.|.+|.+...-..-.                                          .+ .-...-..++++.-
T Consensus       108 K~v~L~~DR~IefHak~G~hy------------------------------------------~~-RIP~~GRDm~y~~~  144 (703)
T KOG2321|consen  108 KSVFLQNDRTIEFHAKYGRHY------------------------------------------RT-RIPKFGRDMKYHKP  144 (703)
T ss_pred             hheEeecCceeeehhhcCeee------------------------------------------ee-ecCcCCccccccCC
Confidence            444445577776653321000                                          00 00122345666554


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      . .-|+.++....|+-++++.+.  .+..+....+.++++..++ ...+|++|+.+|.|.+||.+.      ...+..+.
T Consensus       145 s-cDly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~------ksrv~~l~  214 (703)
T KOG2321|consen  145 S-CDLYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRD------KSRVGTLD  214 (703)
T ss_pred             C-ccEEEeecCcceEEEEccccc--cccccccccccceeeeecC-ccceEEecccCceEEEecchh------hhhheeee
Confidence            4 234455555678888999888  6777777778999999999 899999999999999999998      44444443


Q ss_pred             ------cccc-----eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547          261 ------GHSA-----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  329 (387)
Q Consensus       261 ------~~~~-----~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (387)
                            .|.+     .|+++.|+.+|-. +++|..+|.+.|||++....              ++..-.+..-+|..+.|
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~~p--------------l~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRASKP--------------LLVKDHGYELPIKKLDW  279 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccCCc--------------eeecccCCccceeeecc
Confidence                  2333     3999999998875 68999999999999998432              22223344568999999


Q ss_pred             ccCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          330 NASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       330 ~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      .+.+. .-++++.        ...++|||-.      +|+++..+... ..++.+++
T Consensus       280 ~~~~~q~~v~S~D--------k~~~kiWd~~------~Gk~~asiEpt-~~lND~C~  321 (703)
T KOG2321|consen  280 QDTDQQNKVVSMD--------KRILKIWDEC------TGKPMASIEPT-SDLNDFCF  321 (703)
T ss_pred             cccCCCceEEecc--------hHHhhhcccc------cCCceeecccc-CCcCceee
Confidence            77632 2333322        2789999988      67777766533 23555544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.2e-14  Score=115.96  Aligned_cols=212  Identities=17%  Similarity=0.281  Sum_probs=157.1

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-EEEecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l~s~~~d  108 (387)
                      -.++|..++..   ...|++|-.+|.+.+|..+.+...        ..+...+..+.+  +..+.-++...+ +++|+..
T Consensus       104 ~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~h--------ss~l~~la~g~g--~~~~r~~~~~p~Iva~GGke  170 (412)
T KOG3881|consen  104 GTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLH--------SSKLIKLATGPG--LYDVRQTDTDPYIVATGGKE  170 (412)
T ss_pred             ccccccchhhc---CCEEEEEecCCcEEEEeccCCccc--------cccceeeecCCc--eeeeccCCCCCceEecCchh
Confidence            34556666543   246888889999999999866211        144555665654  567777775554 5568888


Q ss_pred             --CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--CCee
Q 016547          109 --KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQE  184 (387)
Q Consensus       109 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~  184 (387)
                        ..+.+||++............                            ...  ..+ .-.-.++++.|.+.  . +.
T Consensus       171 ~~n~lkiwdle~~~qiw~aKNvp----------------------------nD~--L~L-rVPvW~tdi~Fl~g~~~-~~  218 (412)
T KOG3881|consen  171 NINELKIWDLEQSKQIWSAKNVP----------------------------NDR--LGL-RVPVWITDIRFLEGSPN-YK  218 (412)
T ss_pred             cccceeeeecccceeeeeccCCC----------------------------Ccc--ccc-eeeeeeccceecCCCCC-ce
Confidence              889999998753332211100                            000  000 01235678888776  4 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-ecccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHS  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~  263 (387)
                      |++++.-+.+++||.+.++.| +..+.-.+.+++++...| +++++++|..-|.+..||++.      ++.... +++..
T Consensus       219 fat~T~~hqvR~YDt~~qRRP-V~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~t  290 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRP-VAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGIT  290 (412)
T ss_pred             EEEEecceeEEEecCcccCcc-eeEeccccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCcc
Confidence            999999999999999988765 455566788999999999 999999999999999999998      666655 88889


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +.|.++..+|.++ ++|+++-|..+||+|+.+
T Consensus       291 Gsirsih~hp~~~-~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  291 GSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             CCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence            9999999999999 578999999999999998

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3.5e-14  Score=124.06  Aligned_cols=224  Identities=11%  Similarity=0.133  Sum_probs=139.8

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.+.+.+.+|+| +++.|+..+.+   ..|.+||+.++            +.. .+....+ .+....|+|||+.|+
T Consensus       191 l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g------------~~~-~l~~~~g-~~~~~~~SPDG~~la  255 (427)
T PRK02889        191 ALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATG------------RRR-VVANFKG-SNSAPAWSPDGRTLA  255 (427)
T ss_pred             eccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCC------------CEE-EeecCCC-CccceEECCCCCEEE
Confidence            446788899999999 77777766532   45999999887            222 2222232 346889999999886


Q ss_pred             -EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          104 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       104 -s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                       +.+.+|...+|.++...                                       .....+..+........|+|||.
T Consensus       256 ~~~~~~g~~~Iy~~d~~~---------------------------------------~~~~~lt~~~~~~~~~~wSpDG~  296 (427)
T PRK02889        256 VALSRDGNSQIYTVNADG---------------------------------------SGLRRLTQSSGIDTEPFFSPDGR  296 (427)
T ss_pred             EEEccCCCceEEEEECCC---------------------------------------CCcEECCCCCCCCcCeEEcCCCC
Confidence             56778887777764210                                       00122333444456678999995


Q ss_pred             eeEEEecCCCeEEEEEcc--CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEeccCCCCCCCCceE
Q 016547          183 QEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~  257 (387)
                      .++++...+|...+|.+.  .+.   ..............+|+| ++++++..+.++   .|.+||+.+      +.. .
T Consensus       297 ~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~------g~~-~  365 (427)
T PRK02889        297 SIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLAT------GQV-T  365 (427)
T ss_pred             EEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCC------CCe-E
Confidence            555555556677777654  333   122222233345678999 999998877654   699999886      433 2


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                      .+.. ........|+|+|+.|+.+....|.  +.+.++..  .              ....+..+.+.+...+|+|-
T Consensus       366 ~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g--~--------------~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        366 ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG--R--------------IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC--C--------------ceEEeecCCCCCCCCccCCC
Confidence            3322 2234678999999987766655554  44444432  1              12223445567777888873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.7e-13  Score=120.70  Aligned_cols=238  Identities=11%  Similarity=0.100  Sum_probs=144.7

Q ss_pred             cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCccc
Q 016547           55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      .|.++|.+..            .. ..+..+.. .+....|+|||+.|+..+.+   ..|.+||+.++..          
T Consensus       180 ~l~~~d~~g~------------~~-~~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~----------  235 (430)
T PRK00178        180 TLQRSDYDGA------------RA-VTLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR----------  235 (430)
T ss_pred             EEEEECCCCC------------Cc-eEEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE----------
Confidence            4777777655            22 33444444 57899999999998876543   3688888875422          


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeEE
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV  209 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~  209 (387)
                                                     ..+....+.+....|+|+|..++++...+|  .|.+||+.+++   ...
T Consensus       236 -------------------------------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~  281 (430)
T PRK00178        236 -------------------------------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSR  281 (430)
T ss_pred             -------------------------------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEE
Confidence                                           111122233456899999955555665555  58888998776   233


Q ss_pred             eeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          210 EKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                      +..+........|+| +++.++..+. +|  .|.++|+.+      ++. ..+...........|+|+|++++.+...++
T Consensus       282 lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~------g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~  353 (430)
T PRK00178        282 VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG------GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDG  353 (430)
T ss_pred             cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC------CCE-EEeecCCCCccceEECCCCCEEEEEEccCC
Confidence            444555567789999 8887766554 44  466666654      332 222211223345789999998765554444


Q ss_pred             --eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547          287 --LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  364 (387)
Q Consensus       287 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~  364 (387)
                        .|.+||+......             .+.    +........|+|+|+.++.+...+     ....|.++++.     
T Consensus       354 ~~~l~~~dl~tg~~~-------------~lt----~~~~~~~p~~spdg~~i~~~~~~~-----g~~~l~~~~~~-----  406 (430)
T PRK00178        354 NFHVAAQDLQRGSVR-------------ILT----DTSLDESPSVAPNGTMLIYATRQQ-----GRGVLMLVSIN-----  406 (430)
T ss_pred             ceEEEEEECCCCCEE-------------Ecc----CCCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence              4778888764221             111    111222458999999888765432     22456777776     


Q ss_pred             ccchhhhhhhccCceEEEeeecC
Q 016547          365 PQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       365 ~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                        +.....+..+.+.+...+|+|
T Consensus       407 --g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        407 --GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             --CCceEECcCCCCCcCCCccCC
Confidence              333344444556677777876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=8.1e-14  Score=122.42  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=131.7

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      .+..|.+.+.+.+|+| +++.|+..+.   +..|.+||+.++            .. ..+..+.+ .+....|+|||+.|
T Consensus       196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g------------~~-~~l~~~~g-~~~~~~~SPDG~~l  260 (435)
T PRK05137        196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETG------------QR-ELVGNFPG-MTFAPRFSPDGRKV  260 (435)
T ss_pred             EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCC------------cE-EEeecCCC-cccCcEECCCCCEE
Confidence            3446888999999999 7777776643   468999999887            22 23444444 46688999999987


Q ss_pred             E-EecCCCe--EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          103 L-SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       103 ~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      + +.+.++.  |.+||+.++..                                         ..+..+........|+|
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~Lt~~~~~~~~~~~sp  299 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-----------------------------------------TRLTDSPAIDTSPSYSP  299 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-----------------------------------------EEccCCCCccCceeEcC
Confidence            5 5555655  66667654321                                         22333444556789999


Q ss_pred             CCCeeEEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCC
Q 016547          180 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       180 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~  254 (387)
                      ++..++++...+|  .|+++|+..++   ...+..+...+....|+| +++.|+..+.+   ..|.+||+..      + 
T Consensus       300 DG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~------~-  368 (435)
T PRK05137        300 DGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG------S-  368 (435)
T ss_pred             CCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC------C-
Confidence            9944444443444  57888877665   233333445567789999 99988877654   3577788753      2 


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  295 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~  295 (387)
                      ....+. ....+....|+|||+.++.+....     ..+.++|+..
T Consensus       369 ~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        369 GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            233333 223467889999999876555433     2577777765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.67  E-value=1.1e-13  Score=121.67  Aligned_cols=237  Identities=13%  Similarity=0.140  Sum_probs=146.6

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA  130 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~  130 (387)
                      ..|.++|.+..            . ...+..+.. .+....|+|||++|+.+..+   ..|.+||+.++..         
T Consensus       170 ~~l~~~d~~g~------------~-~~~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------  226 (417)
T TIGR02800       170 YELQVADYDGA------------N-PQTITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------  226 (417)
T ss_pred             ceEEEEcCCCC------------C-CEEeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------
Confidence            35777777544            2 233444444 57789999999999877643   4799999875421         


Q ss_pred             cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeE
Q 016547          131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK  208 (387)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~  208 (387)
                                                      ..+..+...+.+++|+|++..++++.+.++  .|++||+.++.   ..
T Consensus       227 --------------------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~  271 (417)
T TIGR02800       227 --------------------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LT  271 (417)
T ss_pred             --------------------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EE
Confidence                                            122233445667899999955556666554  58888988765   33


Q ss_pred             EeeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547          209 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  285 (387)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d  285 (387)
                      .+..+........|+| +++.|+..+. ++  .|.++|+..      ++ ...+..+...+....|+|++++++.+. .+
T Consensus       272 ~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~------~~-~~~l~~~~~~~~~~~~spdg~~i~~~~-~~  342 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG------GE-VRRLTFRGGYNASPSWSPDGDLIAFVH-RE  342 (417)
T ss_pred             ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEeecCCCCccCeEECCCCCEEEEEE-cc
Confidence            3444445556788999 8888876654 34  566677664      33 334444456677889999999765444 44


Q ss_pred             C---eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547          286 G---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       286 ~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                      +   .|.+||+......                .+... .......|+|++++++++...+     ....+.+.+..   
T Consensus       343 ~~~~~i~~~d~~~~~~~----------------~l~~~-~~~~~p~~spdg~~l~~~~~~~-----~~~~l~~~~~~---  397 (417)
T TIGR02800       343 GGGFNIAVMDLDGGGER----------------VLTDT-GLDESPSFAPNGRMILYATTRG-----GRGVLGLVSTD---  397 (417)
T ss_pred             CCceEEEEEeCCCCCeE----------------EccCC-CCCCCceECCCCCEEEEEEeCC-----CcEEEEEEECC---
Confidence            3   6888888763211                11111 1234568999999888766533     22456666655   


Q ss_pred             ccccchhhhhhhccCceEEEeeec
Q 016547          363 YRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       363 ~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                          +.....+..+.+.+..++|+
T Consensus       398 ----g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       398 ----GRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             ----CceeeECCCCCCCcCCCCCC
Confidence                43444454444555555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.66  E-value=4.1e-12  Score=107.98  Aligned_cols=282  Identities=12%  Similarity=0.176  Sum_probs=170.4

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecC----CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC   96 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~   96 (387)
                      .+.......-......++++| ++++|.+...    +|.|..|++.......        ..+........ .-..++++
T Consensus        26 ~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--------~~~~~~~~~g~-~p~~i~~~   95 (345)
T PF10282_consen   26 TLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTL--------TLLNSVPSGGS-SPCHIAVD   95 (345)
T ss_dssp             EEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEE--------EEEEEEEESSS-CEEEEEEC
T ss_pred             CceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCccee--------EEeeeeccCCC-CcEEEEEe
Confidence            444444455566677888899 6666666654    6799999988651110        12222221222 23589999


Q ss_pred             CCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547           97 PTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus        97 ~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      |++++|+++. .+|.|.++++............ ....+                      .  .+ ...+.......++
T Consensus        96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~-~~~~g----------------------~--g~-~~~rq~~~h~H~v  149 (345)
T PF10282_consen   96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT-VRHEG----------------------S--GP-NPDRQEGPHPHQV  149 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE-EESEE----------------------E--ES-STTTTSSTCEEEE
T ss_pred             cCCCEEEEEEccCCeEEEEEccCCcccceeeee-cccCC----------------------C--CC-cccccccccceeE
Confidence            9999998876 4899999999863111100000 00000                      0  00 0001123457889


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccCCCCcee--EE-eeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCC
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--KV-EKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~  251 (387)
                      .++|++..++++.-....|.+|++........  .. ........+.+.|+| +++++.+.. .++.|.++++.....  
T Consensus       150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g--  226 (345)
T PF10282_consen  150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG--  226 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--
Confidence            99999955555555667899999987652221  11 224456789999999 877765554 578899999983110  


Q ss_pred             CCCceEEeccc------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          252 VGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       252 ~~~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      ..+.+..+...      ......|+++|+|++|+++...++.|.+|++.......           ..+...........
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-----------~~~~~~~~~G~~Pr  295 (345)
T PF10282_consen  227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-----------TLVQTVPTGGKFPR  295 (345)
T ss_dssp             EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-----------EEEEEEEESSSSEE
T ss_pred             ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-----------EEEEEEeCCCCCcc
Confidence            01222222211      12578899999999999888889999999995422111           22333333345579


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .++++|+|++|+++...+       +.|.+|+++
T Consensus       296 ~~~~s~~g~~l~Va~~~s-------~~v~vf~~d  322 (345)
T PF10282_consen  296 HFAFSPDGRYLYVANQDS-------NTVSVFDID  322 (345)
T ss_dssp             EEEE-TTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEecCC-------CeEEEEEEe
Confidence            999999999999866555       899999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.66  E-value=5.5e-14  Score=108.07  Aligned_cols=260  Identities=14%  Similarity=0.148  Sum_probs=178.6

Q ss_pred             CcEEEEEecC--CCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           32 GEVNRIRELP--QNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        32 ~~v~~i~~~~--~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      +.+..|.|..  .++. .++-+..+|.|.++.....+....+.+      +...+-... .-.++.|++.+..++++..+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~------ls~~ki~~~-~~lslD~~~~~~~i~vs~s~  142 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG------LSSKKISVV-EALSLDISTSGTKIFVSDSR  142 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc------cchhhhhhe-eeeEEEeeccCceEEEEcCC
Confidence            4456666653  3444 566677889999998776532222211      100000010 13478999999999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.+.+-+....                                      ..+..+.++.|.-+++..+|+...++++.+|
T Consensus       143 G~~~~v~~t~~--------------------------------------~le~vq~wk~He~E~Wta~f~~~~pnlvytG  184 (339)
T KOG0280|consen  143 GSISGVYETEM--------------------------------------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG  184 (339)
T ss_pred             CcEEEEeccee--------------------------------------eeeecccccccceeeeeeecccCCCceEEec
Confidence            99885444321                                      1222356788999999999998888999999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      +.|+.+..||++..+.-......-|...|.+|.-+|..+.++++|+.|-.|++||.|++     ++++..-. -.+.|..
T Consensus       185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm-----~kPl~~~~-v~GGVWR  258 (339)
T KOG0280|consen  185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM-----GKPLFKAK-VGGGVWR  258 (339)
T ss_pred             CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc-----cCccccCc-cccceEE
Confidence            99999999999955432334466789999999999878999999999999999999976     67766554 3588999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                      +.++|.-...+..++.-+..+|-++........          ........|.+-+..-.|... ..++++||      .
T Consensus       259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~----------~~~~s~~~hdSl~YG~DWd~~-~~~lATCs------F  321 (339)
T KOG0280|consen  259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ----------IVLPSDKIHDSLCYGGDWDSK-DSFLATCS------F  321 (339)
T ss_pred             EEecchhhhHHHHHHHhcCceEEEecccccchh----------eeeeccccccceeeccccccc-cceeeeee------c
Confidence            999996543333444555578888876433210          234556778888888888655 34566653      4


Q ss_pred             CCceEE-EEecC
Q 016547          349 GGGTLQ-IWRMS  359 (387)
Q Consensus       349 ~dg~i~-iw~~~  359 (387)
                      .|+.++ +|-.-
T Consensus       322 YDk~~~~~Wl~~  333 (339)
T KOG0280|consen  322 YDKKIRQLWLHI  333 (339)
T ss_pred             cccceeeeeeec
Confidence            557755 77554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2e-13  Score=119.66  Aligned_cols=238  Identities=13%  Similarity=0.128  Sum_probs=142.7

Q ss_pred             cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-CC--eEEEEEcCCCcCccccCCCccc
Q 016547           55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      .+.++|.+..            .. ..+..+.. .+....|+|||+.|+..+. ++  .|.+||+.++...         
T Consensus       199 ~l~i~d~dG~------------~~-~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------  255 (448)
T PRK04792        199 QLMIADYDGY------------NE-QMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------  255 (448)
T ss_pred             EEEEEeCCCC------------Cc-eEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---------
Confidence            5666676554            22 22333333 5778999999999887653 33  5778887654211         


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeEE
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKV  209 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~  209 (387)
                                                      .+...........|+|+|..++++.+.+|.  |.++|+.+++   ...
T Consensus       256 --------------------------------~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~  300 (448)
T PRK04792        256 --------------------------------KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTR  300 (448)
T ss_pred             --------------------------------EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEE
Confidence                                            111112223467999999555566666775  7777887766   334


Q ss_pred             eeccCCCeeEEEecCCCCCeEEEeeC-CCe--EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          210 EKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                      +..+.......+|+| +++.++..+. ++.  |.++|+.+      ++. ..+..........+|+|+|++++.+...++
T Consensus       301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~------g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS------GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CCE-EEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            444555667889999 8887776554 444  55556654      332 222212223345789999998776655555


Q ss_pred             e--EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547          287 L--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  364 (387)
Q Consensus       287 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~  364 (387)
                      .  |.++|+......             .   +... .......|+|+|+.++.+...+     ....+.+++.+     
T Consensus       373 ~~~I~~~dl~~g~~~-------------~---lt~~-~~d~~ps~spdG~~I~~~~~~~-----g~~~l~~~~~~-----  425 (448)
T PRK04792        373 KFNIARQDLETGAMQ-------------V---LTST-RLDESPSVAPNGTMVIYSTTYQ-----GKQVLAAVSID-----  425 (448)
T ss_pred             ceEEEEEECCCCCeE-------------E---ccCC-CCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence            4  444566553211             1   1111 1122447999999988766433     12346777765     


Q ss_pred             ccchhhhhhhccCceEEEeeecC
Q 016547          365 PQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       365 ~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                        +.....+..+.+.+...+|+|
T Consensus       426 --G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        426 --GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --CCceEECcCCCCCcCCCccCC
Confidence              555566666667778888887

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=9.9e-13  Score=111.44  Aligned_cols=272  Identities=13%  Similarity=0.160  Sum_probs=161.5

Q ss_pred             eeeecCCCcEEE-EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           25 HKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        25 ~~~~~h~~~v~~-i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+...+.+.. +.|+| +++++.+++.||.|.++|+.+.            +.+..+..-..  -..+++++||++++
T Consensus        29 ~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~------------~~v~~i~~G~~--~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   29 VARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATG------------KVVATIKVGGN--PRGIAVSPDGKYVY   93 (369)
T ss_dssp             EEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSS------------SEEEEEE-SSE--EEEEEE--TTTEEE
T ss_pred             EEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcc------------cEEEEEecCCC--cceEEEcCCCCEEE
Confidence            334444444444 56777 8888888899999999999999            66666666554  46999999999988


Q ss_pred             Eec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          104 SGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       104 s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++. ..+.+.++|.++.+.........                                 .........+.++..+|..+
T Consensus        94 v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   94 VANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             EEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-TTTS---EEEEEE-SSSS
T ss_pred             EEecCCCceeEeccccccceeeccccc---------------------------------ccccccCCCceeEEecCCCC
Confidence            765 68999999998653322111100                                 00001345677888888875


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCC------------
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTS------------  249 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~------------  249 (387)
                      .++++.-..+.|.+.|....+. ................|+| ++++++++ ..++.|-++|..+...            
T Consensus       141 ~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~  218 (369)
T PF02239_consen  141 EFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP  218 (369)
T ss_dssp             EEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE
T ss_pred             EEEEEEccCCeEEEEEeccccc-cceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccc
Confidence            5566666668898889877653 3333334456778899999 88877664 4456777777655210            


Q ss_pred             -------------------------------------CCCCCceEEeccccceEEEEEEcCCCCeeEEE---ecCCCeEE
Q 016547          250 -------------------------------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLN  289 (387)
Q Consensus       250 -------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s---~~~d~~i~  289 (387)
                                                           ...++.+.++.....+ .-+.-+|+++++.+.   +...+.|.
T Consensus       219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~  297 (369)
T PF02239_consen  219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQ  297 (369)
T ss_dssp             TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred             cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEE
Confidence                                                 0012233333333334 567779999998766   45678999


Q ss_pred             EEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccch
Q 016547          290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE  368 (387)
Q Consensus       290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~  368 (387)
                      ++|.++.               .....+.. ....+..+.|+++|+++.+|.-+.      ++.|.+||..      +.+
T Consensus       298 viD~~tl---------------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~------~~~i~v~D~~------Tl~  350 (369)
T PF02239_consen  298 VIDKKTL---------------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG------NGAIVVYDAK------TLK  350 (369)
T ss_dssp             EEECCGT---------------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--------TTEEEEEETT------TTE
T ss_pred             EEECcCc---------------ceeEEEeccCCCcEeccEECCCCCEEEEEEecC------CCEEEEEECC------CcE
Confidence            9999985               22333322 223589999999999999876543      3499999999      566


Q ss_pred             hhhhhh
Q 016547          369 VLAELE  374 (387)
Q Consensus       369 ~~~~~~  374 (387)
                      .+.++.
T Consensus       351 ~~~~i~  356 (369)
T PF02239_consen  351 EKKRIP  356 (369)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            665554

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=8.2e-15  Score=120.08  Aligned_cols=227  Identities=15%  Similarity=0.201  Sum_probs=166.3

Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      ....|..|.+ .|+.+.|+..|..|++|+.|..|.+||.........                                 
T Consensus       134 l~~kL~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~---------------------------------  179 (559)
T KOG1334|consen  134 LQKKLNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS---------------------------------  179 (559)
T ss_pred             hhhcccCCCC-ccceeeecccCceeeccCccceEEeehhhccCcccc---------------------------------
Confidence            4456888998 899999999999999999999999999976543322                                 


Q ss_pred             CCCCceeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                            -..+|...|....|.|. +...+++++.||.+++=.+..... .....+..|.++|..++..|.....|.+++.
T Consensus       180 ------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge  253 (559)
T KOG1334|consen  180 ------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE  253 (559)
T ss_pred             ------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCccccccc
Confidence                  22468888887788775 336799999999999877654332 2245566899999999999988899999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccc---eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSA---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                      |+.+.-+|++....   ...+..-+.+..   ....++..|...+.||+++.|..+++||.+...+.........-.|..
T Consensus       254 D~~v~~~Dlr~~~p---a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h  330 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVP---AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH  330 (559)
T ss_pred             ccceeeeeeccCCc---cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence            99999999997321   111222233333   578999999999889999999999999998865542221111111111


Q ss_pred             eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          313 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      ++.   .....|++++|+.++.-++++.+++        .|+++.-
T Consensus       331 l~~---d~~v~ITgl~Ysh~~sElLaSYnDe--------~IYLF~~  365 (559)
T KOG1334|consen  331 LVE---DDPVNITGLVYSHDGSELLASYNDE--------DIYLFNK  365 (559)
T ss_pred             ccc---cCcccceeEEecCCccceeeeeccc--------ceEEecc
Confidence            111   2334799999999999999777665        7888853

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=9.8e-13  Score=111.48  Aligned_cols=271  Identities=9%  Similarity=0.062  Sum_probs=158.4

Q ss_pred             CcEE-EEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           44 TKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        44 ~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ++++ ++-..+|.|.+.|..+.            +.+..+..... .-..+.++|||+++++++.||.|.++|+.+.+..
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~------------~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v   71 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATN------------KVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV   71 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-------------SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred             ccEEEEEecCCCEEEEEECCCC------------eEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence            3444 45567899999999988            67777776543 3346789999999999999999999999875432


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  202 (387)
                                                              ..+.. .....+++++++|...+++....+.+.++|.++.
T Consensus        72 ----------------------------------------~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   72 ----------------------------------------ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             ----------------------------------------EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             ----------------------------------------EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence                                                    33332 2346789999999555555567999999999887


Q ss_pred             CCceeEEeec-------cCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547          203 TSPVIKVEKA-------HDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  274 (387)
Q Consensus       203 ~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (387)
                      +  .+..+..       ....+..+..+| ....++.. -+.+.|-+.|....     ..................|+|+
T Consensus       111 e--~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  111 E--PVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPD  182 (369)
T ss_dssp             ---EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TT
T ss_pred             c--ceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcc
Confidence            7  4444332       234667787788 66645544 44588888887762     1122222223456778999999


Q ss_pred             CCeeEEEecCCCeEEEEeCCCCCceeccCCCC----------------------------------------CCCCceee
Q 016547          275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----------------------------------------TNYPAGLF  314 (387)
Q Consensus       275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~  314 (387)
                      +++++++...+..|-++|..+...........                                        .....+.+
T Consensus       183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv  262 (369)
T PF02239_consen  183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV  262 (369)
T ss_dssp             SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred             cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence            99988777777889899887743322111000                                        00122344


Q ss_pred             eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC-ceEEEeeecC
Q 016547          315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP  387 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~f~P  387 (387)
                      ..+....++ .-+.-+|+++++.+...    .+...++|.++|..      +.+.+.++.... ..+..+.|+|
T Consensus       263 ~~I~~~G~g-lFi~thP~s~~vwvd~~----~~~~~~~v~viD~~------tl~~~~~i~~~~~~~~~h~ef~~  325 (369)
T PF02239_consen  263 KTIPTQGGG-LFIKTHPDSRYVWVDTF----LNPDADTVQVIDKK------TLKVVKTITPGPGKRVVHMEFNP  325 (369)
T ss_dssp             EEEE-SSSS---EE--TT-SEEEEE-T----T-SSHT-EEEEECC------GTEEEE-HHHHHT--EEEEEE-T
T ss_pred             EEEECCCCc-ceeecCCCCccEEeecc----CCCCCceEEEEECc------CcceeEEEeccCCCcEeccEECC
Confidence            444444445 67788999999987632    23345899999999      455555554222 2466666654

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=1.7e-13  Score=105.46  Aligned_cols=150  Identities=16%  Similarity=0.311  Sum_probs=101.2

Q ss_pred             EEEEecCCCCcEEE-EecC---------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           35 NRIRELPQNTKIVA-THTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        35 ~~i~~~~~~~~~l~-t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.|+| .|++|+ ....         -|...+|.++...           .+...+.-...++|.+++|+|+|+.+++
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-----------~~~~~i~l~~~~~I~~~~WsP~g~~fav   76 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-----------IPVESIELKKEGPIHDVAWSPNGNEFAV   76 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-----------CccceeeccCCCceEEEEECcCCCEEEE
Confidence            4567888 554444 3331         2345566654331           2344444433346999999999998654


Q ss_pred             --ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          105 --GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       105 --~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                        |..++.|.+||++..                                           ....-+...+..+.|+|+| 
T Consensus        77 i~g~~~~~v~lyd~~~~-------------------------------------------~i~~~~~~~~n~i~wsP~G-  112 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVKGK-------------------------------------------KIFSFGTQPRNTISWSPDG-  112 (194)
T ss_pred             EEccCCcccEEEcCccc-------------------------------------------EeEeecCCCceEEEECCCC-
Confidence              446789999999621                                           1122235677899999999 


Q ss_pred             eeEEEecC---CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC------CCeEEEEEec
Q 016547          183 QEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRR  245 (387)
Q Consensus       183 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~~~d~~  245 (387)
                      +++++++.   .|.|.+||+++.+  .+... .| ..++.++|+| +|++|++++.      |+.++||+..
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~-~~-~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRKKK--KISTF-EH-SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCE--Eeecc-cc-CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEec
Confidence            67777653   4679999999665  33333 23 4578999999 9999999875      6788999986

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=2.4e-12  Score=107.75  Aligned_cols=154  Identities=14%  Similarity=0.321  Sum_probs=103.6

Q ss_pred             EEEEccCCCeeEEEecC-----------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe--eCCCeEE
Q 016547          174 DVTFCPSSAQEFCSVGD-----------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVR  240 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~  240 (387)
                      .+.|++-|..+|+.++.           +.++++.++....   ........++|.++.|+| +++.++++  -.-..+.
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVT  297 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEecCCCCCceEEEECC-CCCEEEEEEecccceEE
Confidence            45666665444444332           2356666666222   223334578999999999 88666654  4467899


Q ss_pred             EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      |||++       +.++..+.  +++-+++-|+|.|++++++|-.  -|.|.|||+.+.               +++..+.
T Consensus       298 ifnlr-------~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---------------K~i~~~~  353 (566)
T KOG2315|consen  298 IFNLR-------GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---------------KLIAKFK  353 (566)
T ss_pred             EEcCC-------CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch---------------hhccccc
Confidence            99999       78887775  5778899999999977655543  488999999984               2233333


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..  .-+-+.|+|||++++.+...-  =--.|+.++||++.
T Consensus       354 a~--~tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  354 AA--NTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHYT  390 (566)
T ss_pred             cC--CceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEec
Confidence            32  345678999999988542110  00247999999998

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=1.3e-14  Score=135.98  Aligned_cols=193  Identities=17%  Similarity=0.317  Sum_probs=152.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .|-..|.++.-+| ...+.+||+.||.|++|....+            ..+..++.-....|+.+.|+.+|+.+..+..|
T Consensus      2206 ~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~------------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHG------------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred             cccCceeeecCCC-CCceEEecCCCceEEEEeccCC------------CeEEEeeccCcchhhhhhhcccCCceeeeccC
Confidence            3557789999888 6678889999999999999888            55555555444578999999999999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.+.+|.+..                                         ++....+.|.....++.|-.   ..++++
T Consensus      2273 g~l~l~q~~p-----------------------------------------k~~~s~qchnk~~~Df~Fi~---s~~~ta 2308 (2439)
T KOG1064|consen 2273 GDLSLWQASP-----------------------------------------KPYTSWQCHNKALSDFRFIG---SLLATA 2308 (2439)
T ss_pred             CceeecccCC-----------------------------------------cceeccccCCccccceeeee---hhhhcc
Confidence            9999999862                                         23355677888888888875   346665


Q ss_pred             c---CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          189 G---DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       189 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      +   .++.+.+||........... ..|.+.++++++.| ..++|++|+.+|.|++||++.      .+.++.++.    
T Consensus      2309 g~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~---- 2376 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA---- 2376 (2439)
T ss_pred             ccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh----
Confidence            4   57889999976543222222 78999999999999 999999999999999999998      677766664    


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                           +. ... .|++|+..|.|+||++...+
T Consensus      2377 -----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 -----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             -----hh-hhh-eeeccCcccceEEEEccccc
Confidence                 33 333 57799999999999998863

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=2.9e-13  Score=104.14  Aligned_cols=236  Identities=14%  Similarity=0.112  Sum_probs=159.7

Q ss_pred             CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC---CCC-EEEEecCCCeEEEEEcCCCcCccccCC
Q 016547           52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEP-YVLSGGKDKSVVLWSIQDHITSSATDP  127 (387)
Q Consensus        52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~---~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~  127 (387)
                      ..|.+.++++...+...          ...++....+.+..+.|..   +|. .++-+..+|.|.++............+
T Consensus        44 R~Gkl~Lys~~d~~~~~----------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~  113 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSP----------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG  113 (339)
T ss_pred             eccceEEEeecccccCc----------cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc
Confidence            34678899888773321          1222222222467888864   455 466677789999998764332222211


Q ss_pred             CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee
Q 016547          128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI  207 (387)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  207 (387)
                                                        +...+-......++.|++.+ ..++++..+|.+.+-+.........
T Consensus       114 ----------------------------------ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~v  158 (339)
T KOG0280|consen  114 ----------------------------------LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKV  158 (339)
T ss_pred             ----------------------------------cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeec
Confidence                                              01111111135678888888 6688888899999766665553334


Q ss_pred             EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          208 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                      ...+.|+-+.....|+..+.+++.+|++|+.+..||+|.+     ++.+.. .+.|...|.+|.-+|..++.+++|+.|.
T Consensus       159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-----~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe  233 (339)
T KOG0280|consen  159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-----KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE  233 (339)
T ss_pred             ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC-----cceeeecceeeecceEEEecCCCCCceEEEecccc
Confidence            4778899999999999878899999999999999999953     344433 5678899999999987666788999999


Q ss_pred             eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecCCCCCCCCCceEEEEecCC
Q 016547          287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .|++||.++.+++...               ..-.+.|..+.++|.-.. ++++|..        +-.+|-++++
T Consensus       234 ~i~~~DtRnm~kPl~~---------------~~v~GGVWRi~~~p~~~~~lL~~CMh--------~G~ki~~~~~  285 (339)
T KOG0280|consen  234 CIRVLDTRNMGKPLFK---------------AKVGGGVWRIKHHPEIFHRLLAACMH--------NGAKILDSSD  285 (339)
T ss_pred             ceeeeehhcccCcccc---------------CccccceEEEEecchhhhHHHHHHHh--------cCceEEEecc
Confidence            9999999987665432               122378999999996543 3333322        3456666663

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=4.1e-14  Score=121.98  Aligned_cols=270  Identities=21%  Similarity=0.390  Sum_probs=192.1

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC---EEE
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP---YVL  103 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~---~l~  103 (387)
                      .+.-.+.+.++..+| .++-+|.++.-| +.+-|++..-           .+-+.+..-+.-.|-.+.|+|...   .++
T Consensus        20 sl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~-----------~ppr~l~h~tpw~vad~qws~h~a~~~wiV   86 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPF-----------TPPRWLHHITPWQVADVQWSPHPAKPYWIV   86 (1081)
T ss_pred             EEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCC-----------CCceeeeccCcchhcceecccCCCCceeEE
Confidence            344578889999999 778888888776 6777887662           333333333333466788887543   344


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +.+ ...-.+|++....                                     .......+.+|...|+.+.|.|+.+.
T Consensus        87 sts-~qkaiiwnlA~ss-------------------------------------~~aIef~lhghsraitd~n~~~q~pd  128 (1081)
T KOG0309|consen   87 STS-NQKAIIWNLAKSS-------------------------------------SNAIEFVLHGHSRAITDINFNPQHPD  128 (1081)
T ss_pred             ecC-cchhhhhhhhcCC-------------------------------------ccceEEEEecCccceeccccCCCCCc
Confidence            444 4556689886421                                     11222566799999999999999989


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      .+++++-|-.+..||+++...+.. ....-...-..++|+..++..+| .+..+.|++||.+..     ..++..+++|-
T Consensus       129 Vlatcsvdt~vh~wd~rSp~~p~y-s~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g-----s~pl~s~K~~v  201 (1081)
T KOG0309|consen  129 VLATCSVDTYVHAWDMRSPHRPFY-STSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG-----STPLCSLKGHV  201 (1081)
T ss_pred             ceeeccccccceeeeccCCCccee-eeecccccCceeeecccCcchhh-hccCCceEEEeccCC-----CcceEEecccc
Confidence            999999999999999999885543 34444556789999985555554 466778999999985     68899999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-------------------------------------
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------------------------------------  306 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------------------  306 (387)
                      ..|+.++|+..-...+.+++.|++|+.||..+..+........                                     
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~  281 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL  281 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhh
Confidence            9999999987533345699999999999998744332211100                                     


Q ss_pred             ---CCCCceeeeeeccCCCCeeEEEEccC---------CCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          307 ---TNYPAGLFFQHAGHRDKVVDFHWNAS---------DPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       307 ---~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                         .....+.+..+.||.+.|..+.|-..         ..+.+++-|.|       .++++|-+.+.
T Consensus       282 e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD-------~~lrlWpI~~~  341 (1081)
T KOG0309|consen  282 EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD-------QTLRLWPIDSQ  341 (1081)
T ss_pred             hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC-------CceEeeeccHH
Confidence               00134467788999999988888643         24677766655       89999999853

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.3e-12  Score=110.48  Aligned_cols=186  Identities=12%  Similarity=0.086  Sum_probs=110.1

Q ss_pred             CCeEEEEEccCCCeeEEEecCCC----eEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEE
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFD  243 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d  243 (387)
                      +.....+|+|||..++++...+|    .+..|++..+.. ................+|+| +++.|+..+ .+|...+|.
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEE
Confidence            34456799999955555554333    345577665321 11222222223446789999 998777665 467666665


Q ss_pred             eccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC--CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547          244 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  321 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (387)
                      +.....   +.....+..+...+....|+|||+.|+.+...+  ..|.+||+......                .+....
T Consensus       310 ~~~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~----------------~Lt~~~  370 (428)
T PRK01029        310 MQIDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY----------------QLTTSP  370 (428)
T ss_pred             EECccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE----------------EccCCC
Confidence            432100   223344444445677899999999876555443  36899998874321                122223


Q ss_pred             CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..+....|+|||++++++...     .....|.+|++.      .++. ..+....+.+...+|+|
T Consensus       371 ~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~------~g~~-~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        371 ENKESPSWAIDSLHLVYSAGN-----SNESELYLISLI------TKKT-RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             CCccceEECCCCCEEEEEECC-----CCCceEEEEECC------CCCE-EEeecCCCcccCceecC
Confidence            356778999999998876542     234788999988      3332 22333344566667766

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=2.6e-13  Score=123.25  Aligned_cols=222  Identities=16%  Similarity=0.227  Sum_probs=147.5

Q ss_pred             CCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  155 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (387)
                      ..+..+..|.. .|..++.++. +.++++||.||+|++|+.++-...                                 
T Consensus      1039 ~lVAhL~Ehs~-~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------------------------------- 1084 (1431)
T KOG1240|consen 1039 ILVAHLHEHSS-AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------------------------------- 1084 (1431)
T ss_pred             eEeehhhhccc-cccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------------------
Confidence            45677788887 4567777665 599999999999999999753221                                 


Q ss_pred             CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----eeEEeecc-CCCeeEE-EecCCCCC
Q 016547          156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAH-DADLHCV-DWNPLDDN  228 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~-~~~i~~~-~~~~~~~~  228 (387)
                      ....+...++......+.++...+.+ +.+|.++.||.|++.++...+..     ..+....+ .+.+.+| ++......
T Consensus      1085 ~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1085 GGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred             cceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence            11222234444456788999999988 78999999999999998873211     11111111 2233333 34332344


Q ss_pred             -eEEEeeCCCeEEEEEeccCCCCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547          229 -LILTGSADNSVRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       229 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  305 (387)
                       .++.+..-+.|..||.++.      .....+  ....+.|++++.+|.+.+ ++.|...|.+.+||++-. .+..    
T Consensus      1164 ~~lvy~T~~~~iv~~D~r~~------~~~w~lk~~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~-~~i~---- 1231 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMR------HDAWRLKNQLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR-VPIL---- 1231 (1431)
T ss_pred             eeEEEEEeccceEEecchhh------hhHHhhhcCccccceeEEEecCCceE-EEEecCCceEEEEEeecC-ceee----
Confidence             7888888899999999983      333222  234578999999999996 679999999999999973 2211    


Q ss_pred             CCCCCceeeeeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCC-CCceEEEEecCC
Q 016547          306 TTNYPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTG-GGGTLQIWRMSD  360 (387)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~-~dg~i~iw~~~~  360 (387)
                               .-...+..++..+..+|-.+  ...+++      |. ..+.|.+|++..
T Consensus      1232 ---------sw~~P~~~~i~~v~~~~~~~~~S~~vs~------~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1232 ---------SWEHPARAPIRHVWLCPTYPQESVSVSA------GSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ---------cccCcccCCcceEEeeccCCCCceEEEe------cccCCCceeeeeccc
Confidence                     11123446777777776544  333332      22 558999999983

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=1.5e-10  Score=92.44  Aligned_cols=300  Identities=11%  Similarity=0.165  Sum_probs=186.0

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      .+...++..+.+.++-|+|+| +.+.|.++..   +|.|.-|.++...-...+.      -...+.++.   -.-+++++
T Consensus        29 ~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l------n~~~~~g~~---p~yvsvd~   98 (346)
T COG2706          29 ELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL------NRQTLPGSP---PCYVSVDE   98 (346)
T ss_pred             ccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe------eccccCCCC---CeEEEECC
Confidence            455566677889999999999 7777777744   5788888887531111110      011122332   25899999


Q ss_pred             CCCEEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 TEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 ~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      +|++++++.. -|.|.++-+++.-........                         ..-....+ . .+..+..+....
T Consensus        99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-------------------------~~h~g~~p-~-~rQ~~~h~H~a~  151 (346)
T COG2706          99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-------------------------VKHTGSGP-H-ERQESPHVHSAN  151 (346)
T ss_pred             CCCEEEEEEccCceEEEEEcccCCccccceee-------------------------eecCCCCC-C-ccccCCccceee
Confidence            9999998874 588999988652111100000                         00000000 0 011122377888


Q ss_pred             EccCCCeeEEEec-CCCeEEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCC
Q 016547          177 FCPSSAQEFCSVG-DDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       177 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~  253 (387)
                      +.|++ +++++.. .--.|.+|++..+...... .........+-|.|+| ++++..+..+ +++|-+|.....     .
T Consensus       152 ~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~-----~  224 (346)
T COG2706         152 FTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPA-----V  224 (346)
T ss_pred             eCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCC-----C
Confidence            99999 5555543 4457999999976632111 1123456678999999 8887776665 899999998863     1


Q ss_pred             CceEEeccc---------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547          254 SPINKFEGH---------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  324 (387)
Q Consensus       254 ~~~~~~~~~---------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  324 (387)
                      ..+..++.+         ......|..+++|++|.|+--....|.+|.+...+...           ..+.....+....
T Consensus       225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L-----------~~~~~~~teg~~P  293 (346)
T COG2706         225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL-----------ELVGITPTEGQFP  293 (346)
T ss_pred             ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-----------EEEEEeccCCcCC
Confidence            223333221         23567889999999988776667789999988754432           2334444455567


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEeeec
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK  386 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~f~  386 (387)
                      ..+.|++.+++|+++.-+.       ..|.+|.++..    +|++-.... .......||.|.
T Consensus       294 R~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~~----TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         294 RDFNINPSGRFLIAANQKS-------DNITVFERDKE----TGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             ccceeCCCCCEEEEEccCC-------CcEEEEEEcCC----CceEEecccccCCCCcEEEEEc
Confidence            8999999999998755443       78999999842    454433222 233345566664

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=1.7e-12  Score=109.34  Aligned_cols=196  Identities=20%  Similarity=0.289  Sum_probs=151.8

Q ss_pred             CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC------C--------------CCC
Q 016547           41 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC------P--------------TEP  100 (387)
Q Consensus        41 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~------~--------------~~~  100 (387)
                      |+...++|....||.++|||...+....++      .+...+.+-    .++..|.      |              +..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------~p~~~~s~t----~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~   71 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF------APIASLSGT----CTYTKWGLSADYSPMKWLSLEKAKKASLDTS   71 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeee------ccchhccCc----ceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence            446789999999999999999988543332      222222221    1233331      1              233


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .++-|...|.|.+|++..+.....                                      ..-..|.+.|.++.++.+
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~--------------------------------------~st~~h~~~v~~~~~~~~  113 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAK--------------------------------------LSTDKHYGNVNEILDAQR  113 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEE--------------------------------------EecCCCCCcceeeecccc
Confidence            567777788888888876543221                                      122478999999999888


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      - ..|.+++.|+.+..|+.....  ...........+.+++++| ++..+++++  +.|++||+++      .+.+..|.
T Consensus       114 ~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~------kevv~~ft  181 (541)
T KOG4547|consen  114 L-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIET------KEVVITFT  181 (541)
T ss_pred             c-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccC------ceEEEEec
Confidence            7 789999999999999998887  6777778888999999999 899999876  7899999999      99999999


Q ss_pred             cccceEEEEEEcCC-----CCeeEEEecCCCeEEEEeCCCC
Q 016547          261 GHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       261 ~~~~~i~~~~~~~~-----~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +|.++|.++.|--+     |.++|.+...+..|.+|-++..
T Consensus       182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            99999999999877     7888877778888999988774

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.3e-13  Score=113.99  Aligned_cols=210  Identities=12%  Similarity=0.229  Sum_probs=154.1

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEE
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  114 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vw  114 (387)
                      ..|+++...-.+++.|+. ..|+=++++.+            +.+..+....+ .++++..++-..+|++|+.+|.|.+|
T Consensus       137 RDm~y~~~scDly~~gsg-~evYRlNLEqG------------rfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQG------------RFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             ccccccCCCccEEEeecC-cceEEEEcccc------------ccccccccccc-cceeeeecCccceEEecccCceEEEe
Confidence            456677656666666554 46888899988            56666665555 68999999999999999999999999


Q ss_pred             EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeE
Q 016547          115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL  194 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  194 (387)
                      |.+..............                             ...........|+++.|..+| -.+++|..+|.+
T Consensus       203 DpR~ksrv~~l~~~~~v-----------------------------~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v  252 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSV-----------------------------NSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSV  252 (703)
T ss_pred             cchhhhhheeeeccccc-----------------------------CCCccccccCcceEEEecCCc-eeEEeeccCCcE
Confidence            99876443322221000                             000011123459999999887 889999999999


Q ss_pred             EEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547          195 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  274 (387)
Q Consensus       195 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (387)
                      .|||+++.+ |....-....-+|..+.|.+.+.+--+.......++|||-.+      +++...++. ...++.+++-|+
T Consensus       253 ~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~------Gk~~asiEp-t~~lND~C~~p~  324 (703)
T KOG2321|consen  253 LIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT------GKPMASIEP-TSDLNDFCFVPG  324 (703)
T ss_pred             EEEEcccCC-ceeecccCCccceeeecccccCCCceEEecchHHhhhccccc------CCceeeccc-cCCcCceeeecC
Confidence            999999987 344444555678999999884444444445667899999999      899988885 445999999999


Q ss_pred             CCeeEEEecCCCeEEEEeCCCCC
Q 016547          275 KSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       275 ~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +.. +.++-+++.+..|=+...+
T Consensus       325 sGm-~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  325 SGM-FFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             Cce-EEEecCCCcceeEEccccC
Confidence            884 5588888989888887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=5.2e-12  Score=111.30  Aligned_cols=201  Identities=10%  Similarity=0.083  Sum_probs=123.1

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+...+...+|+| +++.|+..+.+   ..|.+||+.+++            .. .+....+ .+....|+|||++|
T Consensus       193 ~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~------------~~-~l~~~~g-~~~~~~~SpDG~~l  257 (430)
T PRK00178        193 TLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGR------------RE-QITNFEG-LNGAPAWSPDGSKL  257 (430)
T ss_pred             EEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCC------------EE-EccCCCC-CcCCeEECCCCCEE
Confidence            3446778899999999 77777665433   368999998772            11 1222222 24478999999988


Q ss_pred             E-EecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          103 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       103 ~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      + +.+.+|  .|.+||+.++..                                         ..+..+........|+|
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~lt~~~~~~~~~~~sp  296 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQL-----------------------------------------SRVTNHPAIDTEPFWGK  296 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCe-----------------------------------------EEcccCCCCcCCeEECC
Confidence            7 444555  577778765421                                         11222333455678999


Q ss_pred             CCCeeEEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-C--eEEEEEeccCCCCCCCC
Q 016547          180 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N--SVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       180 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~  254 (387)
                      ++..++++...+|  .|+++|+.+++.   ..+...........|+| +++.++..+.+ +  .|.++|+.+      +.
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t------g~  366 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVTFVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR------GS  366 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC------CC
Confidence            9955555554444  477777776662   12211222334578999 88888877653 3  577888876      33


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE  294 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~  294 (387)
                      . ..+.. ........|+|+|+.++.+...++.  |.++++.
T Consensus       367 ~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        367 V-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             E-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            2 22221 1222356899999987766655544  5555654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=4.4e-12  Score=111.68  Aligned_cols=201  Identities=12%  Similarity=0.160  Sum_probs=127.4

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCC---CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .++..+.+.+...+|+| +++.|+.+..+   ..|++||+.++            +. ..+..+.. .+.++.|+|||+.
T Consensus       183 ~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g------------~~-~~~~~~~~-~~~~~~~spDg~~  247 (417)
T TIGR02800       183 QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATG------------QR-EKVASFPG-MNGAPAFSPDGSK  247 (417)
T ss_pred             EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCC------------CE-EEeecCCC-CccceEECCCCCE
Confidence            34445777899999999 77888776543   47999999877            22 22333333 3567899999997


Q ss_pred             EE-EecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          102 VL-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       102 l~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      |+ +.+.++  .|.+||+.++..                                         ..+..+........|+
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~s  286 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQL-----------------------------------------TRLTNGPGIDTEPSWS  286 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCE-----------------------------------------EECCCCCCCCCCEEEC
Confidence            76 444444  577888765321                                         1122233334456899


Q ss_pred             cCCCeeEEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEeccCCCCCCC
Q 016547          179 PSSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVG  253 (387)
Q Consensus       179 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~  253 (387)
                      |++..++++...++  .|.++|+.+++   ...+..+........|+| ++++++.++.++   .|.+||+.+      +
T Consensus       287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~------~  356 (417)
T TIGR02800       287 PDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDG------G  356 (417)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCC------C
Confidence            99844444544444  57777877665   233334556677889999 899998888776   788888875      3


Q ss_pred             CceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeC
Q 016547          254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDY  293 (387)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~  293 (387)
                      .. ..+... .......|+|++++|+++...++.  +.+.+.
T Consensus       357 ~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       357 GE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             Ce-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            22 222221 223456899999987655554443  444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.54  E-value=1.9e-12  Score=109.08  Aligned_cols=211  Identities=12%  Similarity=0.132  Sum_probs=150.2

Q ss_pred             CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      |...++|....||.+++|+..+.+....+.+.......+.....              .       ...........++.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w--------------~-------L~~~~s~~k~~~~~   61 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW--------------G-------LSADYSPMKWLSLE   61 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE--------------E-------EEeccchHHHHhHH
Confidence            45678999999999999999887655444442111111110000              0       00000000011111


Q ss_pred             Ec---cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC
Q 016547          177 FC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       177 ~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  253 (387)
                      +.   ..+...++-|...|.|.+|++..++......-..|.+.|+++.++. +-..|.+++.|+.+..|+...      .
T Consensus        62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~------~  134 (541)
T KOG4547|consen   62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE------K  134 (541)
T ss_pred             HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc------c
Confidence            10   1122467888899999999999988332333357999999999998 899999999999999999998      8


Q ss_pred             CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC-
Q 016547          254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS-  332 (387)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  332 (387)
                      +.++.++.-...+.+++.+||+.. +++++  +.|++||+++.               +.+..+.||.++|.++.|-.+ 
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~-l~~as--~~ik~~~~~~k---------------evv~~ftgh~s~v~t~~f~~~~  196 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKI-LLTAS--RQIKVLDIETK---------------EVVITFTGHGSPVRTLSFTTLI  196 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCE-EEecc--ceEEEEEccCc---------------eEEEEecCCCcceEEEEEEEec
Confidence            888999888889999999999984 55664  78999999986               568889999999999999887 


Q ss_pred             ----CCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          333 ----DPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       333 ----~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                          |.+++.+       ...+.-+.+|-+..
T Consensus       197 ~g~~G~~vLss-------a~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  197 DGIIGKYVLSS-------AAAERGITVWVVEK  221 (541)
T ss_pred             cccccceeeec-------cccccceeEEEEEc
Confidence                7788863       33446788887763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=6.9e-12  Score=110.09  Aligned_cols=220  Identities=11%  Similarity=0.092  Sum_probs=129.1

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecC-CC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+...+.+..|+| +++.|+..+. ++  .|.+||+.+++            .. .+....+ ......|+|||+.|+.
T Consensus       214 ~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~------------~~-~lt~~~g-~~~~~~wSPDG~~La~  278 (448)
T PRK04792        214 LRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQV------------RE-KVTSFPG-INGAPRFSPDGKKLAL  278 (448)
T ss_pred             ecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCC------------eE-EecCCCC-CcCCeeECCCCCEEEE
Confidence            34566788999999 7777766543 33  58888988762            21 1211121 2347899999998764


Q ss_pred             -ecCCCe--EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          105 -GGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       105 -~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                       .+.++.  |.++|+.++..                                         ..+..+........|+|++
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~-----------------------------------------~~lt~~~~~~~~p~wSpDG  317 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKAL-----------------------------------------TRITRHRAIDTEPSWHPDG  317 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCCC
Confidence             455665  66667654321                                         2222333445678999999


Q ss_pred             CeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC--eEEEEEeccCCCCCCCCce
Q 016547          182 AQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       182 ~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~  256 (387)
                      ..++++...++.  |.++|+.+++.   ..+..........+|+| ++++++..+. ++  .|.++|+.+      +.. 
T Consensus       318 ~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~------g~~-  386 (448)
T PRK04792        318 KSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET------GAM-  386 (448)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC------CCe-
Confidence            555555555554  66667766652   22222222334578999 8888877665 34  345566655      332 


Q ss_pred             EEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      ..+... .......|+|+|+.++.+...++.  +.+++....                ....+..+.+.+...+|+|
T Consensus       387 ~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~----------------~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        387 QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR----------------FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEECcCCCCCcCCCccCC
Confidence            222221 112245799999987766666654  566665432                1222344455667778887

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.51  E-value=2.4e-12  Score=101.40  Aligned_cols=204  Identities=14%  Similarity=0.175  Sum_probs=144.7

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      .+.+++++.|.+ +.+.|..|-..|++.-+.+...-+..        ...+....|.. .|..+-|+-....+++++.|.
T Consensus        67 mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm--------~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk  136 (404)
T KOG1409|consen   67 MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKM--------TFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDK  136 (404)
T ss_pred             CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhc--------chhhhhhhhhc-ceeeEEecCCceeEEEecccc
Confidence            468899999999 88899999999999988776542211        34455677877 789999999899999999998


Q ss_pred             eEEEEEcCCCcCccccCCCccc-CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          110 SVVLWSIQDHITSSATDPATAK-SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      .+.---.+.+.....+...... .............................++..+.+|.+.+.+++|.|.. .++++|
T Consensus       137 ~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg  215 (404)
T KOG1409|consen  137 QFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSG  215 (404)
T ss_pred             ceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEec
Confidence            7765444444332222111110 00000011111112222222223344556778889999999999999987 899999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ..|..+.+||+--.+. ......+|...|..+...+ .-..+.+++.||.|-+||++.
T Consensus       216 ~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence            9999999999976553 4566778999999999988 788999999999999999875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2.4e-12  Score=111.00  Aligned_cols=288  Identities=13%  Similarity=0.208  Sum_probs=191.8

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcc---cccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH---AVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      +..+....|++|+. ...++|+|+.||.+++-.+.+.....   .+....+-...+++.||.. .|..+.|+.+.+.|-+
T Consensus        11 iPnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWNe~~QKLTt   88 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWNENNQKLTT   88 (1189)
T ss_pred             CCCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEeccccccccc
Confidence            34567789999999 78899999999999999887653321   2222333345678999998 6899999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ...+|.|.+|-+-++.-...                                      ..-...++-|.+++|..+| ..
T Consensus        89 SDt~GlIiVWmlykgsW~EE--------------------------------------MiNnRnKSvV~SmsWn~dG-~k  129 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEE--------------------------------------MINNRNKSVVVSMSWNLDG-TK  129 (1189)
T ss_pred             cCCCceEEEEeeecccHHHH--------------------------------------HhhCcCccEEEEEEEcCCC-cE
Confidence            99999999998876532111                                      1112345679999999999 77


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC-CCceEE----e
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GSPINK----F  259 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~----~  259 (387)
                      +...-.||.|.+=.++..+   +............+.|++ +...++.+-..|.+.+||.......+. ..+...    +
T Consensus       130 IcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~  205 (1189)
T KOG2041|consen  130 ICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF  205 (1189)
T ss_pred             EEEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence            8888899999887776543   111111223345788999 888888888999999999764211000 011111    1


Q ss_pred             ccccceEEEEEEc--------CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          260 EGHSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       260 ~~~~~~i~~~~~~--------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      ......|-.+.|.        |+.+. ||.+-.+|.+.|-.-.+...+             .+.. .  .-.+.+..|++
T Consensus       206 s~~~~kia~i~w~~g~~~~v~pdrP~-lavcy~nGr~QiMR~eND~~P-------------vv~d-t--gm~~vgakWnh  268 (1189)
T KOG2041|consen  206 SNFPTKIAEIEWNTGPYQPVPPDRPR-LAVCYANGRMQIMRSENDPEP-------------VVVD-T--GMKIVGAKWNH  268 (1189)
T ss_pred             cCCCccccceeeccCccccCCCCCCE-EEEEEcCceehhhhhcCCCCC-------------eEEe-c--ccEeecceecC
Confidence            1112234455553        46664 678888999888765553322             1211 1  24688999999


Q ss_pred             CCCeEEEEecCCCC--CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          332 SDPWTVVSVSDDCD--STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       332 ~~~~l~~s~s~d~~--tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      +|..|++. +.|..  .-...+.|.+|..-       |+.+.+++.....|+++.|
T Consensus       269 ~G~vLAvc-G~~~da~~~~d~n~v~Fysp~-------G~i~gtlkvpg~~It~lsW  316 (1189)
T KOG2041|consen  269 NGAVLAVC-GNDSDADEPTDSNKVHFYSPY-------GHIVGTLKVPGSCITGLSW  316 (1189)
T ss_pred             CCcEEEEc-cCcccccCccccceEEEeccc-------hhheEEEecCCceeeeeEE
Confidence            99876653 33210  11112466666654       8888888888888888876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=4.3e-12  Score=98.79  Aligned_cols=308  Identities=14%  Similarity=0.194  Sum_probs=172.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----------CceEEEEECC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCP   97 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~~v~~~~~~~   97 (387)
                      ...+.|+++.|-. .|.+|+||...|.|.++.-+....       .+.+....+++|.-           ..|..|.|..
T Consensus        24 tead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~-------ceykf~teFQshe~EFDYLkSleieEKin~I~w~~   95 (460)
T COG5170          24 TEADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYG-------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD   95 (460)
T ss_pred             cccceeeEEEecc-ccceEeecCCCceEEEeecccccc-------cchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence            3567799999988 899999999999999998665421       11123334444432           1478888877


Q ss_pred             CCC--EEEEecCCCeEEEEEcCCCcCccccCCC--cccCCCCCCceeccCCCCCCCCCCC-CCCCCCCCceee-cCCCCC
Q 016547           98 TEP--YVLSGGKDKSVVLWSIQDHITSSATDPA--TAKSAGSSGSIIKQSPKPGDGNDKA-ADGPSVGPRGIY-NGHEDT  171 (387)
Q Consensus        98 ~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~  171 (387)
                      ++.  .++..+.|++|++|.+............  ........+.+. ............ .......+.+.+ ..|.-.
T Consensus        96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~-s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLT-STKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcC-CHHHhhcccccccceEEEeccceeccccceeE
Confidence            643  3555567999999999765322111110  000000000000 000000000000 000011222333 578888


Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-eeEEeeccC-----CCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHD-----ADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      |.++.+..+. ..++++ .|-.|.+|++.-.... .+....+|.     .-|++..|+|...+.+.-.+..|.|++-|+|
T Consensus       175 iNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         175 INSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeeeeecCch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            9999999887 556554 6789999998764421 122233333     3578889999777888888999999999999


Q ss_pred             cCCCCCCCCceE----------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          246 NLTSNGVGSPIN----------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       246 ~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      ...-......+.          -+..-...|..+.|+++|++++ +- .--+++|||++....+....+........+..
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d  330 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELND  330 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Ee-ccceEEEEecccccCCceeechHHHHHHHHHh
Confidence            521100011111          1122235688999999999754 44 35689999999876554322110000000000


Q ss_pred             eeccCCCCe---eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          316 QHAGHRDKV---VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       316 ~~~~~~~~v---~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      . . ....|   ..+.|+-+...++        +|+..+..-+|-..
T Consensus       331 ~-Y-EnDaifdkFeisfSgd~~~v~--------sgsy~NNfgiyp~~  367 (460)
T COG5170         331 V-Y-ENDAIFDKFEISFSGDDKHVL--------SGSYSNNFGIYPTD  367 (460)
T ss_pred             h-h-hccceeeeEEEEecCCccccc--------ccccccceeeeccc
Confidence            0 0 01122   3466777776666        66666666666643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=4e-12  Score=113.88  Aligned_cols=197  Identities=15%  Similarity=0.166  Sum_probs=144.4

Q ss_pred             EEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC
Q 016547           92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT  171 (387)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (387)
                      ...+..+.+.++.+..+..+.+||............                               .     .+.-...
T Consensus        92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------------------~-----er~~l~~  135 (967)
T KOG0974|consen   92 GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------------------D-----ERCTLYS  135 (967)
T ss_pred             ccchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------------------C-----ceEEEEe
Confidence            344555677888888899999999876432211100                               0     0000011


Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      ..-+..+++. -++++|+--+.|.+|+....+.+.  .+.+|.+.|.++.++- +++++++.|+|+.+|+|++.+     
T Consensus       136 ~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s-----  206 (967)
T KOG0974|consen  136 SLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDS-----  206 (967)
T ss_pred             EEEEeccCcE-EEEEeccccccEEEEeccccCCcc--eecccCCceEEEEEcc-CCcEEEEEecCcceeeeeccc-----
Confidence            2223345554 789999999999999998554332  5779999999999999 999999999999999999998     


Q ss_pred             CCCceE-EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC-CeeEEEE
Q 016547          252 VGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHW  329 (387)
Q Consensus       252 ~~~~~~-~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  329 (387)
                       .+... ..-+|...|..+.|.|+  . +++++.|.+.++|+....                .+..+.+|.. .+..++.
T Consensus       207 -~~~~~~~~fgHsaRvw~~~~~~n--~-i~t~gedctcrvW~~~~~----------------~l~~y~~h~g~~iw~~~~  266 (967)
T KOG0974|consen  207 -REVLGCTGFGHSARVWACCFLPN--R-IITVGEDCTCRVWGVNGT----------------QLEVYDEHSGKGIWKIAV  266 (967)
T ss_pred             -ccccCcccccccceeEEEEeccc--e-eEEeccceEEEEEecccc----------------eehhhhhhhhcceeEEEE
Confidence             44333 56679999999999998  3 579999999999976652                2334556654 7899998


Q ss_pred             ccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      .++....+        |++.|+.+++|++...
T Consensus       267 ~~~~~~~v--------T~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  267 PIGVIIKV--------TGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cCCceEEE--------eeccCcchhhhhhhcc
Confidence            88666555        7888899999998743

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=1.2e-09  Score=93.04  Aligned_cols=264  Identities=9%  Similarity=0.135  Sum_probs=154.9

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC----CCeEEEEEcCCCcCccccCCCc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----DKSVVLWSIQDHITSSATDPAT  129 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~  129 (387)
                      +.|.+|+++......        ..+.....-.  .-..++++|++++|.+...    ++.|..|++.....        
T Consensus        13 ~gI~~~~~d~~~g~l--------~~~~~~~~~~--~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--------   74 (345)
T PF10282_consen   13 GGIYVFRFDEETGTL--------TLVQTVAEGE--NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG--------   74 (345)
T ss_dssp             TEEEEEEEETTTTEE--------EEEEEEEESS--SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--------
T ss_pred             CcEEEEEEcCCCCCc--------eEeeeecCCC--CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--------
Confidence            689999884441111        1122222222  2357899999999988765    57999999875310        


Q ss_pred             ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-eeE
Q 016547          130 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIK  208 (387)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~  208 (387)
                                                  ....+............++++|++..++++.-.+|.|.++++...... ...
T Consensus        75 ----------------------------~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   75 ----------------------------TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             ----------------------------EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             ----------------------------eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence                                        001111222123345578999999555555557999999999874211 111


Q ss_pred             Eee-----------ccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCc--eEEec-cccceEEEEEEcC
Q 016547          209 VEK-----------AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP--INKFE-GHSAAVLCVQWSP  273 (387)
Q Consensus       209 ~~~-----------~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~--~~~~~-~~~~~i~~~~~~~  273 (387)
                      ...           .......++.++| +++++++... ...|.+|++....    ++.  ...+. ........++|+|
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSP  201 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-T
T ss_pred             eecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcC
Confidence            111           1234578999999 8888877654 4579999998632    112  12222 2345678999999


Q ss_pred             CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-c--CCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547          274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  350 (387)
Q Consensus       274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d  350 (387)
                      +++++++..-.++.|.++++.........        .+.+..+. +  .......++++|++++|.++...+       
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-------  266 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYDPSDGSLTE--------IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-------  266 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEE--------EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------
T ss_pred             CcCEEEEecCCCCcEEEEeecccCCceeE--------EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------
Confidence            99999888889999999999832211110        01111111 1  112678999999999999866544       


Q ss_pred             ceEEEEecCCCcccccch--hhhhhhccCceEEEeeecC
Q 016547          351 GTLQIWRMSDLIYRPQDE--VLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       351 g~i~iw~~~~~~~~~~~~--~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++|.+|+++..    ++.  .+..+......-+.++|+|
T Consensus       267 ~sI~vf~~d~~----~g~l~~~~~~~~~G~~Pr~~~~s~  301 (345)
T PF10282_consen  267 NSISVFDLDPA----TGTLTLVQTVPTGGKFPRHFAFSP  301 (345)
T ss_dssp             TEEEEEEECTT----TTTEEEEEEEEESSSSEEEEEE-T
T ss_pred             CEEEEEEEecC----CCceEEEEEEeCCCCCccEEEEeC
Confidence            89999999521    122  2223333333456666654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.45  E-value=5.4e-12  Score=113.11  Aligned_cols=190  Identities=19%  Similarity=0.317  Sum_probs=145.9

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC---ceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN---AEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  119 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  119 (387)
                      +...++.++.+..+.+||........+            .......   ...-+.++++.-++++|+.-+.|.+|+....
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~------------i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSK------------IQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehh------------cCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence            455777778888999999887632221            1111110   1123445667779999999999999998621


Q ss_pred             cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEc
Q 016547          120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA  199 (387)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  199 (387)
                                                             ..+ ..+.+|.+.|..+.|+.+| .++++.+.|..+++|++
T Consensus       166 ---------------------------------------n~p-~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i  204 (967)
T KOG0974|consen  166 ---------------------------------------NKP-IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPI  204 (967)
T ss_pred             ---------------------------------------CCc-ceecccCCceEEEEEccCC-cEEEEEecCcceeeeec
Confidence                                                   011 1568999999999999999 89999999999999999


Q ss_pred             cCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-ceEEEEEEcCCCCee
Q 016547          200 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQWSPDKSSV  278 (387)
Q Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l  278 (387)
                      ++.+... ...-+|...+..+++.| .  .+++++.|-+.++|+..       +..+..+..|. ..|..++..++.. +
T Consensus       205 ~s~~~~~-~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~  272 (967)
T KOG0974|consen  205 DSREVLG-CTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-I  272 (967)
T ss_pred             ccccccC-cccccccceeEEEEecc-c--eeEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-E
Confidence            9988433 34558999999999998 4  99999999999999776       56666787775 4588999888776 5


Q ss_pred             EEEecCCCeEEEEeCCCCC
Q 016547          279 FGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       279 l~s~~~d~~i~vwd~~~~~  297 (387)
                      .++++.|+.+++||+....
T Consensus       273 ~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  273 KVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEeeccCcchhhhhhhccc
Confidence            6799999999999987643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=3.5e-12  Score=100.51  Aligned_cols=246  Identities=14%  Similarity=0.188  Sum_probs=149.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .|.++.|...|.+|++|..+|.|.++.-...... .+.....                     .....+...-+..+ .-
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~---------------------fqshepEFDYLkSl-ei   83 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTE---------------------FQSHEPEFDYLKSL-EI   83 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeee---------------------eeccCcccchhhhh-hh
Confidence            6899999999999999999999999975432210 0000000                     00000001111111 11


Q ss_pred             CCCeEEEEEccCCC-eeEEEecCCCeEEEEEccCCCCce----------------------------------eEEeecc
Q 016547          169 EDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPV----------------------------------IKVEKAH  213 (387)
Q Consensus       169 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------~~~~~~~  213 (387)
                      ...|..+.|.++++ ..++..+.|.+|++|.++......                                  ...-..|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35688999988752 467777899999999886542111                                  0011356


Q ss_pred             CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-----cceEEEEEEcCCCCeeEEEecCCCeE
Q 016547          214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLL  288 (387)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~ll~s~~~d~~i  288 (387)
                      .-.|+++.++. +...++++ +|=.|.+|++.-...   .-.+.-++.+     ..-|++..|+|..-.+|+-.+..|.|
T Consensus       164 tyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~---sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  164 TYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQ---SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             eeEeeeeeecC-ccceEeec-cceeeeeccccccCC---ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            77789999998 78777765 677899999885321   1223333333     35689999999877788888889999


Q ss_pred             EEEeCCCCCceeccCC-CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc
Q 016547          289 NIWDYEKVGKKVEQGP-RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD  367 (387)
Q Consensus       289 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~  367 (387)
                      ++-|++.......... ......+.-..-+.+--..|.++.|+++|+|++.   .|     . -+|++||++-     ..
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils---RD-----y-ltvk~wD~nm-----e~  304 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS---RD-----Y-LTVKLWDLNM-----EA  304 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE---ec-----c-ceeEEEeccc-----cC
Confidence            9999995322111000 0000000111112223357899999999999882   11     1 7999999963     34


Q ss_pred             hhhhhhhcc
Q 016547          368 EVLAELEKF  376 (387)
Q Consensus       368 ~~~~~~~~~  376 (387)
                      +++.+.+.|
T Consensus       305 ~pv~t~~vh  313 (433)
T KOG1354|consen  305 KPVETYPVH  313 (433)
T ss_pred             CcceEEeeh
Confidence            455555444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.4e-10  Score=97.40  Aligned_cols=298  Identities=16%  Similarity=0.217  Sum_probs=176.5

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCC-----------CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-c
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDS-----------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-A   89 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~   89 (387)
                      +...+.+.|++ |.-+.|+| +.+||+|-+..           ..++|||+.++.            ..+.+....+. .
T Consensus       241 f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~------------lkrsF~~~~~~~~  306 (698)
T KOG2314|consen  241 FDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL------------LKRSFPVIKSPYL  306 (698)
T ss_pred             HHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccc------------hhcceeccCCCcc
Confidence            34455566776 78899999 88999987542           478999999994            33333331111 1


Q ss_pred             e-EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc-----cCCCcccCCCCCCceeccCCCCCC--CCCCCCCCCCCCC
Q 016547           90 E-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-----TDPATAKSAGSSGSIIKQSPKPGD--GNDKAADGPSVGP  161 (387)
Q Consensus        90 v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  161 (387)
                      + .-..||.|++|+|--.. .+|.|++.........     ..............+........+  ..+.+...++.+.
T Consensus       307 ~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~  385 (698)
T KOG2314|consen  307 KWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE  385 (698)
T ss_pred             ccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce
Confidence            2 24689999999997665 5789998765321111     111111222222233333333222  2223334444444


Q ss_pred             ceeecCCCCCeEEEEEccCCCeeEEE----------ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE
Q 016547          162 RGIYNGHEDTVEDVTFCPSSAQEFCS----------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  231 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  231 (387)
                      ++...-+.-.=..+.|-.+| .+|+.          .+.-..+-|+.++....+....  .-...|...+|.| .|+.++
T Consensus       386 iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP-~gdkF~  461 (698)
T KOG2314|consen  386 IRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEP-HGDKFA  461 (698)
T ss_pred             eeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeecc-CCCeEE
Confidence            44433333222345566666 34432          1222346677777666433222  3456889999999 777776


Q ss_pred             EeeC---CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCC
Q 016547          232 TGSA---DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRT  306 (387)
Q Consensus       232 ~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~  306 (387)
                      +-+.   ..++.+|-..+..  .....+..+..  ...+.+.|+|.|+++++.+  |..|.+..+|+......       
T Consensus       462 vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k-------  530 (698)
T KOG2314|consen  462 VISGNTVKNTVSFYAVETNI--KKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK-------  530 (698)
T ss_pred             EEEccccccceeEEEeecCC--Cchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhh-------
Confidence            6554   3578999888421  11344445542  5568899999999865443  45889999999852111       


Q ss_pred             CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                             ......| ...+.+.|.|.|+|++.+.+.-  ....|.--+||++.
T Consensus       531 -------~~~~~eh-~~at~veWDPtGRYvvT~ss~w--rhk~d~GYri~tfq  573 (698)
T KOG2314|consen  531 -------DTASPEH-FAATEVEWDPTGRYVVTSSSSW--RHKVDNGYRIFTFQ  573 (698)
T ss_pred             -------hccCccc-cccccceECCCCCEEEEeeehh--hhccccceEEEEee
Confidence                   0111223 2558899999999988665533  45668889999998

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.9e-10  Score=100.32  Aligned_cols=206  Identities=12%  Similarity=0.126  Sum_probs=120.3

Q ss_pred             CCCcEEEEEecCCCCcE---EEEecCCC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           30 HPGEVNRIRELPQNTKI---VATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~---l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ....+..=+|+| +++.   +.+...+|  .|.+.++.+++.          +.+..+.+    ......|+|||+.|+.
T Consensus       183 ~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~----------~~lt~~~g----~~~~p~wSPDG~~Laf  247 (428)
T PRK01029        183 EHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG----------KKILALQG----NQLMPTFSPRKKLLAF  247 (428)
T ss_pred             CCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc----------eEeecCCC----CccceEECCCCCEEEE
Confidence            445566778999 6543   23444443  577778877621          22222222    2346899999998886


Q ss_pred             ecC-CC----eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          105 GGK-DK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       105 ~~~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      .+. +|    .+..|++..+.                                     ..................+|+|
T Consensus       248 ~s~~~g~~di~~~~~~~~~g~-------------------------------------~g~~~~lt~~~~~~~~~p~wSP  290 (428)
T PRK01029        248 ISDRYGNPDLFIQSFSLETGA-------------------------------------IGKPRRLLNEAFGTQGNPSFSP  290 (428)
T ss_pred             EECCCCCcceeEEEeecccCC-------------------------------------CCcceEeecCCCCCcCCeEECC
Confidence            542 23    33445554310                                     0011122222223345679999


Q ss_pred             CCCeeEEEecCCCeEEEEEc--cCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCC
Q 016547          180 SSAQEFCSVGDDSCLILWDA--RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~  254 (387)
                      ||..++++...+|...+|.+  ..... ....+..+...+....|+| +++.|+..+.+   ..|.+||+.+      ++
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~------g~  362 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT------GR  362 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC------CC
Confidence            99555555556776555544  32111 1233334445677899999 89988876553   3689999886      44


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKV  296 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~  296 (387)
                      . ..+......+....|+|||+.|+.+...  ...|.++|+...
T Consensus       363 ~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        363 D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             e-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            3 3333233456789999999987655543  356888888764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.39  E-value=2.5e-11  Score=92.14  Aligned_cols=212  Identities=17%  Similarity=0.219  Sum_probs=130.6

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  113 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v  113 (387)
                      |+.+.+.  ....|+++..++.+.....-...+...........+...+..|++ +-.+-+.+--++.++++..||.+.+
T Consensus        39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-p~p~~~~s~~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-IDPNDACTMTDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-CCCcccccccCCceEecCCCceEEE
Confidence            5556554  345788888888777776655533332222223345555555544 2233344445778999999999999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec----
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----  189 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----  189 (387)
                      .+.+.-.......+                                      ..|.+ -.+.++...+ +++.++.    
T Consensus       116 ~s~~~~~~~~~~i~--------------------------------------~~~~~-~as~~~~~~~-~~i~s~~~g~~  155 (319)
T KOG4714|consen  116 FSTDKDLALMSRIP--------------------------------------SIHSG-SASRKICRHG-NSILSGGCGNW  155 (319)
T ss_pred             EechHHHhhhhhcc--------------------------------------ccccc-ccccceeecc-cEEecCCcceE
Confidence            99875211110000                                      01111 1112222233 2233221    


Q ss_pred             -CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          190 -DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       190 -~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                       .-+..+.|+++..+.  ..........|++++-+|...+++++|+.||.+-+||.++.     ..+...++.|+.+|+.
T Consensus       156 n~~d~~~a~~~~p~~t--~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~e  228 (319)
T KOG4714|consen  156 NAQDNFYANTLDPIKT--LIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIWE  228 (319)
T ss_pred             eeccceeeeccccccc--ccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhhh
Confidence             223456666665441  11111223349999999977888999999999999999984     4566677899999999


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +-|+|..+.-|.++++||.+.-||-..
T Consensus       229 V~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  229 VHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeccCCCchheeEecCCCcEEEEcCCC
Confidence            999997544455999999999999874

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=5.1e-12  Score=106.01  Aligned_cols=193  Identities=13%  Similarity=0.183  Sum_probs=133.7

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      +......||+..|+.++... +.+-+++++.|.+|++|.++..-..     .....+..+++.|+. +|..+.|..+.++
T Consensus       726 irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk-~i~~igfL~~lr~  798 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKK-PIHDIGFLADLRS  798 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccC-cccceeeeeccce
Confidence            44556678999999998777 7788999999999999998764211     112257778899998 7999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      ++++  ||-|.+||.--+........                                   ..-.+..+.|.|+.-- +.
T Consensus       799 i~Sc--D~giHlWDPFigr~Laq~~d-----------------------------------apk~~a~~~ikcl~nv-~~  840 (1034)
T KOG4190|consen  799 IASC--DGGIHLWDPFIGRLLAQMED-----------------------------------APKEGAGGNIKCLENV-DR  840 (1034)
T ss_pred             eeec--cCcceeecccccchhHhhhc-----------------------------------CcccCCCceeEecccC-cc
Confidence            9876  78999999753322111100                                   0001112233333221 22


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      .-+++.++...+|+++|.+..++.+....   .+....+++++..+ .|++++++-..|.|.+.|.++      ++.+.+
T Consensus       841 ~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vINs  913 (1034)
T KOG4190|consen  841 HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVINS  913 (1034)
T ss_pred             hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------Cceecc
Confidence            12344447889999999999885443332   33446688999999 999999999999999999999      776666


Q ss_pred             eccccceE
Q 016547          259 FEGHSAAV  266 (387)
Q Consensus       259 ~~~~~~~i  266 (387)
                      ++..+...
T Consensus       914 wrpmecdl  921 (1034)
T KOG4190|consen  914 WRPMECDL  921 (1034)
T ss_pred             CCcccchh
Confidence            65444333

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.37  E-value=1.9e-09  Score=103.62  Aligned_cols=284  Identities=12%  Similarity=0.142  Sum_probs=153.4

Q ss_pred             EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCC-CCeEEE-eccCCCceEEEEECCCCCEEEEec-CCCeEE
Q 016547           36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS-RPDLIL-TGHQDNAEFALAMCPTEPYVLSGG-KDKSVV  112 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~-~~h~~~~v~~~~~~~~~~~l~s~~-~d~~i~  112 (387)
                      .+++.+.+++++++-+.++.|++||...... ......... ...-.+ ...-. .-..+++.++++.|+.+. ..+.|+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~-~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFN-RPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccC-CCcEEEEeCCCCEEEEEeCCCceEE
Confidence            5677765677888888889999999865411 110000000 000000 00111 125889999888766554 457899


Q ss_pred             EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      ++|+.++..........      .+              ....  .... .... .-..-..++++|+++.++++.+.++
T Consensus       650 ~id~~~~~V~tlag~G~------~g--------------~~~~--gg~~-~~~~-~ln~P~gVa~dp~~g~LyVad~~~~  705 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGT------KG--------------SDYQ--GGKK-GTSQ-VLNSPWDVCFEPVNEKVYIAMAGQH  705 (1057)
T ss_pred             EEecCCCEEEEEeccCc------cc--------------CCCC--CChh-hhHh-hcCCCeEEEEecCCCeEEEEECCCC
Confidence            99986543211000000      00              0000  0000 0000 0122357899996557888888899


Q ss_pred             eEEEEEccCCCCceeEEeec---------------cCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCC--CC-
Q 016547          193 CLILWDARVGTSPVIKVEKA---------------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNG--VG-  253 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~--~~-  253 (387)
                      .|++||...+.   ...+.+               .-.....|+++| +++ ++++-+.++.|++||+.+.....  .+ 
T Consensus       706 ~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        706 QIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             eEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            99999987764   111111               112456799999 776 55566667999999987621000  00 


Q ss_pred             ----CceEEeccc--------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547          254 ----SPINKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  321 (387)
Q Consensus       254 ----~~~~~~~~~--------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (387)
                          .....+...        -.....++++++|. ++++-..+++|++||....................  ....+.-
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG--~~~~a~l  858 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG--KALKAQL  858 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC--ccccccc
Confidence                000001000        11245889999998 67788889999999987642211100000000000  0012223


Q ss_pred             CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .....++++++|+. ++       +-+.++.|++||+..
T Consensus       859 ~~P~GIavd~dG~l-yV-------aDt~Nn~Irvid~~~  889 (1057)
T PLN02919        859 SEPAGLALGENGRL-FV-------ADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CCceEEEEeCCCCE-EE-------EECCCCEEEEEECCC
Confidence            46789999999974 44       334458999999984

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=5.7e-12  Score=118.92  Aligned_cols=187  Identities=20%  Similarity=0.347  Sum_probs=141.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .|.++.=+|...+-+||+.||.|++|....++.+..++.                                      .+ 
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--------------------------------------~g- 2250 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--------------------------------------AG- 2250 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec--------------------------------------cC-
Confidence            477888888889999999999999999876554433222                                      12 


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEEec
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR  245 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~  245 (387)
                      ...|+.+.|+.+| +.+..+..||.+.+|.+...   .....+.|........|-.   ..+++++   .++.+.+||..
T Consensus      2251 ~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk---~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2251 NSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK---PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred             cchhhhhhhcccC-CceeeeccCCceeecccCCc---ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcc
Confidence            3778999999999 77888999999999998722   3556678888888888853   5566654   46899999987


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      .+..   ...+.  ..|.+.++++++.|..+ +|.+|+.+|.|++||++...               +...+..      
T Consensus      2324 ~~~~---~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrq---------------l~h~~~~------ 2376 (2439)
T KOG1064|consen 2324 LPPM---NSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQ---------------LRHTFQA------ 2376 (2439)
T ss_pred             cCcc---cceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHHH---------------HHHHhhh------
Confidence            5432   23344  77999999999999988 56799999999999998742               1211211      


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                         +. ...+++        +|+..|.++||+++.
T Consensus      2377 ---~~-~~~~f~--------~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2377 ---LD-TREYFV--------TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             ---hh-hhheee--------ccCcccceEEEEccc
Confidence               34 455666        888889999999993

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.34  E-value=1.8e-09  Score=89.89  Aligned_cols=275  Identities=12%  Similarity=0.151  Sum_probs=163.7

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      -.-++..++|+| .|.+|++....| |.+|.-...            ..+. ..-|.+  |.-+.|+|.++||.+=+...
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~------------~~l~-~~~~~~--V~~~~fSP~~kYL~tw~~~p   93 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSK------------AKLV-RFRHPD--VKYLDFSPNEKYLVTWSREP   93 (561)
T ss_pred             cCcchhheeecC-cchheehhhccc-eEEccccch------------hhee-eeecCC--ceecccCcccceeeeeccCC
Confidence            566889999999 999999887765 999998777            3222 233543  88999999999999865433


Q ss_pred             ---------------eEEEEEcCCCcCccccCCCcccC-------CCCCCceeccCCCCCCCCCCCCC---CCCCCCcee
Q 016547          110 ---------------SVVLWSIQDHITSSATDPATAKS-------AGSSGSIIKQSPKPGDGNDKAAD---GPSVGPRGI  164 (387)
Q Consensus       110 ---------------~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  164 (387)
                                     .+.+||+.++.....+.......       ........+...+   ..+.+.+   .....+...
T Consensus        94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---~sl~i~e~t~n~~~~p~~~  170 (561)
T COG5354          94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---SSLYIHEITDNIEEHPFKN  170 (561)
T ss_pred             ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc---CeEEEEecCCccccCchhh
Confidence                           48999999886655444322220       0001111110000   1111111   111111222


Q ss_pred             ecCCCCCeEEEEEccCCC-eeEEE-----ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee----
Q 016547          165 YNGHEDTVEDVTFCPSSA-QEFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS----  234 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~-~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----  234 (387)
                      ++  ...|....|+|.++ ..|+.     .+..+.+++|.+....  .+.........-..+.|.+ .+.+|++--    
T Consensus       171 lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~  245 (561)
T COG5354         171 LR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHT  245 (561)
T ss_pred             cc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecccEEEEec-CCceEEEEEEEee
Confidence            22  35688889998742 22333     4567889999887555  2222222223334678888 676665421    


Q ss_pred             -------CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCee-EEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547          235 -------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV-FGSSAEDGLLNIWDYEKVGKKVEQGPRT  306 (387)
Q Consensus       235 -------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-l~s~~~d~~i~vwd~~~~~~~~~~~~~~  306 (387)
                             ....++|++++.       .-+.......++|...+|.|.++.+ +++|-.+..+.++|++..          
T Consensus       246 ksnKsyfgesnLyl~~~~e-------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------  308 (561)
T COG5354         246 KSNKSYFGESNLYLLRITE-------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------  308 (561)
T ss_pred             ecccceeccceEEEEeecc-------cccceeccccccceeeeecccCCceeEEecccccceeecccccc----------
Confidence                   235678888874       2223322457899999999987653 334567889999999873          


Q ss_pred             CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                            +.  +...++.=+.+.|+|.++++++++-+     -.-|.+-+||..
T Consensus       309 ------l~--~~~Pe~~rNT~~fsp~~r~il~agF~-----nl~gni~i~~~~  348 (561)
T COG5354         309 ------LR--FYFPEQKRNTIFFSPHERYILFAGFD-----NLQGNIEIFDPA  348 (561)
T ss_pred             ------eE--EecCCcccccccccCcccEEEEecCC-----ccccceEEeccC
Confidence                  11  22334445667777777777755422     234667777766

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=6.6e-11  Score=92.29  Aligned_cols=234  Identities=15%  Similarity=0.250  Sum_probs=147.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .|+++.|...|.||++|...|.|.++.-+.....                                   ..+....+++|
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c-----------------------------------eykf~teFQsh   72 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGC-----------------------------------EYKFFTEFQSH   72 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeeccccccc-----------------------------------chhhhhhhccc
Confidence            6899999999999999999999999976543200                                   00111112222


Q ss_pred             ------------CCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCC-------------------------------
Q 016547          169 ------------EDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTS-------------------------------  204 (387)
Q Consensus       169 ------------~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-------------------------------  204 (387)
                                  ...|..+.|..+ +...++..+.|.+|++|.+.....                               
T Consensus        73 e~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl  152 (460)
T COG5170          73 ELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL  152 (460)
T ss_pred             ccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc
Confidence                        245788888765 345677888999999998865410                               


Q ss_pred             ----------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-----ceEEEE
Q 016547          205 ----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCV  269 (387)
Q Consensus       205 ----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~i~~~  269 (387)
                                ++......|.-.|+++.++. +...+++ +.|=.|.+|++.....   .-.+.-++.|.     ..|++.
T Consensus       153 s~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lS-aDdLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSa  227 (460)
T COG5170         153 SEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLS-ADDLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSA  227 (460)
T ss_pred             cccceEEEeccceeccccceeEeeeeeecC-chheeee-ccceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhc
Confidence                      00001135666788899987 6666665 4677899999886431   22334445453     458999


Q ss_pred             EEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC
Q 016547          270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  348 (387)
Q Consensus       270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~  348 (387)
                      .|+|..-.+|.-.+..|.|++-|++...........- ....+--..-+.+-...|..+.|+++|++++.   .|+    
T Consensus       228 eFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls---Rdy----  300 (460)
T COG5170         228 EFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS---RDY----  300 (460)
T ss_pred             ccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE---ecc----
Confidence            9999877677777789999999999532211100000 00000001112233457899999999998772   111    


Q ss_pred             CCceEEEEecCCCcccccchhhhhhhcc
Q 016547          349 GGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                        .+|+|||++.     ...++.++.-|
T Consensus       301 --ltvkiwDvnm-----~k~pikTi~~h  321 (460)
T COG5170         301 --LTVKIWDVNM-----AKNPIKTIPMH  321 (460)
T ss_pred             --ceEEEEeccc-----ccCCceeechH
Confidence              6999999984     34455555433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=3.1e-08  Score=82.48  Aligned_cols=246  Identities=10%  Similarity=0.063  Sum_probs=138.2

Q ss_pred             ecCCCCcEEE-Eec---------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC------CceEEEEECCCCCEE
Q 016547           39 ELPQNTKIVA-THT---------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD------NAEFALAMCPTEPYV  102 (387)
Q Consensus        39 ~~~~~~~~l~-t~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~------~~v~~~~~~~~~~~l  102 (387)
                      ++| +++.|. +.+         .+..|.+||..+.+            .+..+.....      ..-..++++|||++|
T Consensus        53 ~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l  119 (352)
T TIGR02658        53 VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------------PIADIELPEGPRFLVGTYPWMTSLTPDNKTL  119 (352)
T ss_pred             ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCc------------EEeEEccCCCchhhccCccceEEECCCCCEE
Confidence            688 555554 445         57899999999994            4433332111      112378999999999


Q ss_pred             EEec-C-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          103 LSGG-K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       103 ~s~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      +... . +..|.+.|+.+++.......                               ..+...+.  ..+-..+..+.|
T Consensus       120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~~vy~--t~e~~~~~~~~D  166 (352)
T TIGR02658       120 LFYQFSPSPAVGVVDLEGKAFVRMMDV-------------------------------PDCYHIFP--TANDTFFMHCRD  166 (352)
T ss_pred             EEecCCCCCEEEEEECCCCcEEEEEeC-------------------------------CCCcEEEE--ecCCccEEEeec
Confidence            8765 3 78999999987654332221                               00001111  011111223344


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeec-----cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +....++-..+|....=.        ...+..     ...+    .+.+.++.++.+... |.|.+.|+....... ...
T Consensus       167 g~~~~v~~d~~g~~~~~~--------~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~  232 (352)
T TIGR02658       167 GSLAKVGYGTKGNPKIKP--------TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPA  232 (352)
T ss_pred             CceEEEEecCCCceEEee--------eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee-cce
Confidence            422333333334322100        001100     0112    334436777766665 999999965421100 222


Q ss_pred             eEEec-------cccceEEEEEEcCCCCeeEEEec---------CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          256 INKFE-------GHSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       256 ~~~~~-------~~~~~i~~~~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      ...+.       ...+.+.-++++++++++++...         ..+.|.++|..+..               .+..+. 
T Consensus       233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---------------vi~~i~-  296 (352)
T TIGR02658       233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---------------RLRKIE-  296 (352)
T ss_pred             eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---------------EEEEEe-
Confidence            22221       12334455999999998886431         22579999998752               233332 


Q ss_pred             CCCCeeEEEEccCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          320 HRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                      -...+..++++||++ .|+++       ...++.|.+.|..      +++.++++
T Consensus       297 vG~~~~~iavS~Dgkp~lyvt-------n~~s~~VsViD~~------t~k~i~~i  338 (352)
T TIGR02658       297 LGHEIDSINVSQDAKPLLYAL-------STGDKTLYIFDAE------TGKELSSV  338 (352)
T ss_pred             CCCceeeEEECCCCCeEEEEe-------CCCCCcEEEEECc------CCeEEeee
Confidence            234789999999999 66653       3345899999999      67777776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.29  E-value=1.9e-08  Score=83.34  Aligned_cols=147  Identities=15%  Similarity=0.164  Sum_probs=113.9

Q ss_pred             ecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC-eEEEEEcC
Q 016547           39 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-SVVLWSIQ  117 (387)
Q Consensus        39 ~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~  117 (387)
                      |++.+|++++..+. |+..|.+...+.             . .--+|.+ .|.-..+..+++-++.|..|| .+-++|.+
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-------------~-iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~  390 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGY-------------S-IQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKD  390 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCe-------------e-EEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecC
Confidence            55668899998875 678887766651             1 1224444 477778888888899999999 89999998


Q ss_pred             CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEE
Q 016547          118 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW  197 (387)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  197 (387)
                      ++..                                         ..+...-+.|.++..+++| +.++.+.....+.+.
T Consensus       391 ~~e~-----------------------------------------kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vi  428 (668)
T COG4946         391 GGEV-----------------------------------------KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVI  428 (668)
T ss_pred             CceE-----------------------------------------EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEE
Confidence            6532                                         3445556789999999999 778888888999999


Q ss_pred             EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC----eEEEEEecc
Q 016547          198 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRN  246 (387)
Q Consensus       198 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~~~d~~~  246 (387)
                      |+.+++  ....-....+-|+.+.|+| +++++|-+--+|    .|+++|+..
T Consensus       429 didngn--v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         429 DIDNGN--VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EecCCC--eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence            999998  3334445678899999999 999999887776    588999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=2.6e-11  Score=105.14  Aligned_cols=219  Identities=19%  Similarity=0.323  Sum_probs=154.4

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+-+|...|+.+.|+|+...++|+++.|-.|..||+....           .+...+..-.. .-..++|+-....+++
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-----------~p~ys~~~w~s-~asqVkwnyk~p~vla  175 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-----------RPFYSTSSWRS-AASQVKWNYKDPNVLA  175 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-----------cceeeeecccc-cCceeeecccCcchhh
Confidence            45668999999999999999999999999999999998873           55666555444 3468999876556666


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      .+..+.|++||.+.+                                       ..++..+++|...|+.++|...-...
T Consensus       176 sshg~~i~vwd~r~g---------------------------------------s~pl~s~K~~vs~vn~~~fnr~~~s~  216 (1081)
T KOG0309|consen  176 SSHGNDIFVWDLRKG---------------------------------------STPLCSLKGHVSSVNSIDFNRFKYSE  216 (1081)
T ss_pred             hccCCceEEEeccCC---------------------------------------CcceEEecccceeeehHHHhhhhhhh
Confidence            667789999999854                                       23456778899999999997665457


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCC----CCCCceEEe
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSN----GVGSPINKF  259 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~----~~~~~~~~~  259 (387)
                      +.+++.|++|++||......... .......+|..-.+-|....+.+. --.+..+.+++.++....    ...++++.|
T Consensus       217 ~~s~~~d~tvkfw~y~kSt~e~~-~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  217 IMSSSNDGTVKFWDYSKSTTESK-RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             hcccCCCCceeeecccccccccc-eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence            89999999999999876542212 222334556655666632222222 112234445544432211    126789999


Q ss_pred             ccccceEEEEEEcCCC---------CeeEEEecCCCeEEEEeCCC
Q 016547          260 EGHSAAVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~---------~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .+|...|....|-..+         .+-|++-+.|..+++|-+..
T Consensus       296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            9999998877775432         24578999999999998865

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=2.9e-09  Score=81.53  Aligned_cols=235  Identities=11%  Similarity=0.056  Sum_probs=150.1

Q ss_pred             EEEEecC----CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEecCCC
Q 016547           35 NRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDK  109 (387)
Q Consensus        35 ~~i~~~~----~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~  109 (387)
                      ..+.|.|    ..-.+||.|+..|...+|...+.+           ........|.. .|+-+.=..+ .-.+..++.|.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-----------~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndh  138 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-----------GHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDH  138 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcc-----------cceeeeccccc-chhhhhhhcccccceeeccCCc
Confidence            3456666    244689999999999999998763           22222333322 1111111111 22466677888


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC--CeEEEEEccCCCeeEEE
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~  187 (387)
                      ++++.+++.....                                          ...|..  .+..+++++++ .++++
T Consensus       139 t~k~~~~~~~s~~------------------------------------------~~~h~~~~~~ns~~~snd~-~~~~~  175 (344)
T KOG4532|consen  139 TGKTMVVSGDSNK------------------------------------------FAVHNQNLTQNSLHYSNDP-SWGSS  175 (344)
T ss_pred             ceeEEEEecCccc------------------------------------------ceeeccccceeeeEEcCCC-ceEEE
Confidence            8888888643211                                          112222  37889999998 88999


Q ss_pred             ecCCCeEEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE----eccc
Q 016547          188 VGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGH  262 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~  262 (387)
                      .+....|..|.+......... ........-.+..|+. ....+|+++.||++.|||+|.+     +.+..+    ...|
T Consensus       176 Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~-----~tpm~~~sstrp~h  249 (344)
T KOG4532|consen  176 VGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNM-----ATPMAEISSTRPHH  249 (344)
T ss_pred             ecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEeccc-----ccchhhhcccCCCC
Confidence            999999999998775533333 2333445556888998 8899999999999999999985     333332    2458


Q ss_pred             cceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC-CeeEEEEccCCCeEEE
Q 016547          263 SAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNASDPWTVV  338 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~  338 (387)
                      .+.+..+.|++.|.. ||.-.-.-+.+.+-|+++....+......        .....|.. .|..-.|+.++....+
T Consensus       250 nGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--------d~~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  250 NGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--------DVERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             CCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--------cccccccccccccccccCCCccccc
Confidence            899999999986642 33333346789999999875443211110        01122333 4777788877776654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.28  E-value=7.6e-09  Score=97.77  Aligned_cols=236  Identities=15%  Similarity=0.258  Sum_probs=137.2

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEE----eccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIW----DVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ..+.|.++.|.+ +...++.+..+|.|.+.    +....              ....-|.-+..|.+++||||+..|+..
T Consensus        74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~--------------~~E~VG~vd~GI~a~~WSPD~Ella~v  138 (928)
T PF04762_consen   74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDED--------------EIEIVGSVDSGILAASWSPDEELLALV  138 (928)
T ss_pred             CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCc--------------eeEEEEEEcCcEEEEEECCCcCEEEEE
Confidence            347899999999 77778888899999999    43333              223333333469999999999999988


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCC--------CCCCCCCCCC-CCCceeecCCCCCeEEEE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGD--------GNDKAADGPS-VGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~v~~~~  176 (387)
                      ..++++.+-+-. .....................+.+......        ..-...+... ......+. +.+.-..++
T Consensus       139 T~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS  216 (928)
T PF04762_consen  139 TGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS  216 (928)
T ss_pred             eCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence            888888876432 110000000000000000000000000000        0000000000 00112223 455667899


Q ss_pred             EccCCCeeEEEecC---C---CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---CCeEEEEEeccC
Q 016547          177 FCPSSAQEFCSVGD---D---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNL  247 (387)
Q Consensus       177 ~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~  247 (387)
                      |-.|| .+|++.+-   .   ..+++|+-+ +.  .......-.+--.+++|.| .|+++|+.-.   ...|.+|.-+  
T Consensus       217 WRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErN--  289 (928)
T PF04762_consen  217 WRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERN--  289 (928)
T ss_pred             ECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecC--
Confidence            99999 77777653   3   479999865 44  2333333334446889999 9999998875   3456666544  


Q ss_pred             CCCCCCCceEEec----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          248 TSNGVGSPINKFE----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       248 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                           |-.-.+|.    .....|..+.|++++. +||..-.|. |.+|-..+.
T Consensus       290 -----GLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  290 -----GLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             -----CcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCC
Confidence                 33333332    3456899999999999 566665454 999998874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=3.1e-08  Score=79.46  Aligned_cols=243  Identities=9%  Similarity=0.149  Sum_probs=150.8

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC---CCeEEEEEcCCC--cCccccCC
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDH--ITSSATDP  127 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~--~~~~~~~~  127 (387)
                      +.-|++|++++.....        ... .+-.+.+ ..+-|+|+|++++|.++..   +|.|..|.++..  ....... 
T Consensus        15 s~gI~v~~ld~~~g~l--------~~~-~~v~~~~-nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-   83 (346)
T COG2706          15 SQGIYVFNLDTKTGEL--------SLL-QLVAELG-NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-   83 (346)
T ss_pred             CCceEEEEEeCccccc--------chh-hhccccC-CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-
Confidence            4569999998653211        111 1222333 3578999999999988765   477888887642  1110000 


Q ss_pred             CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-CCCeEEEEEccC-CCCc
Q 016547          128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARV-GTSP  205 (387)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~  205 (387)
                                                         ....+  .+-.-+++++++ ++++++. ..|.|.++-++. +...
T Consensus        84 -----------------------------------~~~~g--~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~  125 (346)
T COG2706          84 -----------------------------------QTLPG--SPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQ  125 (346)
T ss_pred             -----------------------------------cccCC--CCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccc
Confidence                                               11111  223778999999 5555554 678999999866 3322


Q ss_pred             eeEEeeccCCC----------eeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547          206 VIKVEKAHDAD----------LHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  274 (387)
Q Consensus       206 ~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (387)
                      .......|.+.          +....+.| ++++|++.+. .-.|.+|++....-.  ......+ ........|.|+|+
T Consensus       126 ~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~--~~~~~~v-~~G~GPRHi~FHpn  201 (346)
T COG2706         126 PVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLT--PADPAEV-KPGAGPRHIVFHPN  201 (346)
T ss_pred             cceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccc--ccccccc-CCCCCcceEEEcCC
Confidence            22233344444          78899999 9999988765 356999999852210  0111122 24566789999999


Q ss_pred             CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547          275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  354 (387)
Q Consensus       275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~  354 (387)
                      +++..+..--+++|.+|............+...    .+-..+. -..+..++..+|+|++|.++--.       ...|-
T Consensus       202 ~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----tlP~dF~-g~~~~aaIhis~dGrFLYasNRg-------~dsI~  269 (346)
T COG2706         202 GKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----TLPEDFT-GTNWAAAIHISPDGRFLYASNRG-------HDSIA  269 (346)
T ss_pred             CcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----cCccccC-CCCceeEEEECCCCCEEEEecCC-------CCeEE
Confidence            998877888899999999988533322111110    0011111 23467889999999999875432       25888


Q ss_pred             EEecCC
Q 016547          355 IWRMSD  360 (387)
Q Consensus       355 iw~~~~  360 (387)
                      +|.++.
T Consensus       270 ~f~V~~  275 (346)
T COG2706         270 VFSVDP  275 (346)
T ss_pred             EEEEcC
Confidence            888874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5.5e-09  Score=88.09  Aligned_cols=277  Identities=12%  Similarity=0.210  Sum_probs=165.2

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-------
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-------  107 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-------  107 (387)
                      +-+.|+| .|.||+|-..-| |.+|--++.            ..++.+ .|++  |.-+.|||+.+||+|=+.       
T Consensus       214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f------------~r~~RF-~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~  276 (698)
T KOG2314|consen  214 TYVRWSP-KGTYLVTFHKQG-IALWGGESF------------DRIQRF-YHPG--VQFIDFSPNEKYLVTYSPEPIIVEE  276 (698)
T ss_pred             eeEEecC-CceEEEEEeccc-eeeecCccH------------HHHHhc-cCCC--ceeeecCCccceEEEecCCccccCc
Confidence            5688999 999999988876 899976655            223333 3664  789999999999998553       


Q ss_pred             ----CCeEEEEEcCCCcCccccCCCccc-------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547          108 ----DKSVVLWSIQDHITSSATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus       108 ----d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                          ...++|||+.++.....+......       .-+.+....+..   ....+.+++.+...++..-.-.-..|....
T Consensus       277 ~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm---~~~sisIyEtpsf~lld~Kslki~gIr~Fs  353 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM---TGNSISIYETPSFMLLDKKSLKISGIRDFS  353 (698)
T ss_pred             ccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe---ccceEEEEecCceeeecccccCCccccCcc
Confidence                257999999998766555442000       011111111111   123444555555443333333446788899


Q ss_pred             EccCCCeeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe----------eCCCeEEE
Q 016547          177 FCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG----------SADNSVRM  241 (387)
Q Consensus       177 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~i~~  241 (387)
                      |+|.+ ++||--...     ..+.+-.+-+++  .++....+.-.=..+-|-. +|.+|+.-          +.-..+.|
T Consensus       354 wsP~~-~llAYwtpe~~~~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eI  429 (698)
T KOG2314|consen  354 WSPTS-NLLAYWTPETNNIPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEI  429 (698)
T ss_pred             cCCCc-ceEEEEcccccCCcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEE
Confidence            99997 666653321     234444444433  2332222222222345555 66666542          22234666


Q ss_pred             EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      +.++..     .-++.... ....|...+|-|.|....+..+.  ..++.+|.+....           ..+.++..+..
T Consensus       430 frireK-----dIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~~dk  492 (698)
T KOG2314|consen  430 FRIREK-----DIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------KKPSLVKELDK  492 (698)
T ss_pred             EEeecc-----CCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------Cchhhhhhhcc
Confidence            766652     23333333 45788999999999864333332  3568888887421           11234444443


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                        ...+.+-|+|.|+++++++     -+|..|.+..+|++
T Consensus       493 --~~~N~vfwsPkG~fvvva~-----l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  493 --KFANTVFWSPKGRFVVVAA-----LVSRRGDLEFYDTD  525 (698)
T ss_pred             --cccceEEEcCCCcEEEEEE-----ecccccceEEEecc
Confidence              4678899999999988776     45577999999998

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.5e-08  Score=87.91  Aligned_cols=195  Identities=11%  Similarity=0.002  Sum_probs=117.1

Q ss_pred             ceEEEEECCCCCE-EEEecC---CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           89 AEFALAMCPTEPY-VLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        89 ~v~~~~~~~~~~~-l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      .+..-.|+|||+. ++..+.   +..|.++|+.++..                                         ..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------------------------------------~~  227 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------------------------------------EK  227 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------------------------------------EE
Confidence            4668999999985 554333   34678888765422                                         22


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCC--CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC--eE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SV  239 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i  239 (387)
                      +....+......|+|||..++++.+.+  ..|.++|+..++   ...+..+........|+| +++.|+..+. .|  .|
T Consensus       228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceE
Confidence            222344556678999996666666544  457777887766   233333333344568999 8887776664 34  46


Q ss_pred             EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC--------CeEEEEeCCCCCceeccCCCCCCCCc
Q 016547          240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPA  311 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~  311 (387)
                      .+.|+..      ++..+... ....  ...|+|+|++++.+....        ..|.+.|+......            
T Consensus       304 y~~dl~~------g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~------------  362 (419)
T PRK04043        304 FMKKLNS------GSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR------------  362 (419)
T ss_pred             EEEECCC------CCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE------------
Confidence            6666665      33322211 1111  248999999877666543        36777787664221            


Q ss_pred             eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                          .+... .......|+|||+.++.+..    . +....+.+.+++
T Consensus       363 ----~LT~~-~~~~~p~~SPDG~~I~f~~~----~-~~~~~L~~~~l~  400 (419)
T PRK04043        363 ----RLTAN-GVNQFPRFSSDGGSIMFIKY----L-GNQSALGIIRLN  400 (419)
T ss_pred             ----ECCCC-CCcCCeEECCCCCEEEEEEc----c-CCcEEEEEEecC
Confidence                11111 12235789999998887643    1 233457777777

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.24  E-value=6.1e-09  Score=79.82  Aligned_cols=230  Identities=10%  Similarity=0.027  Sum_probs=143.9

Q ss_pred             cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CCCEEEEecCCCeEEEEEcCCCcCcccc
Q 016547           51 TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVVLWSIQDHITSSAT  125 (387)
Q Consensus        51 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~~~l~s~~~d~~i~vwd~~~~~~~~~~  125 (387)
                      +....|.+|+..+...          ..+...        ..+.|.|     ...+|+.|+..|...+|...+.....  
T Consensus        49 ~~t~sv~i~~~y~N~~----------~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~--  108 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPK----------GIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL--  108 (344)
T ss_pred             cceeeeEeccccCCch----------hhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcccce--
Confidence            3445688888877621          122222        2344444     34589999999999999987542211  


Q ss_pred             CCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc
Q 016547          126 DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP  205 (387)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  205 (387)
                                                           .....|...|+-+.=.-+...-+..++.|.++++.++..+...
T Consensus       109 -------------------------------------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen  109 -------------------------------------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             -------------------------------------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence                                                 1112222222222111122234667788888888888765522


Q ss_pred             eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEEEEcCCCCeeEEEecC
Q 016547          206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAE  284 (387)
Q Consensus       206 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ll~s~~~  284 (387)
                      ......  .-.+.++++++ +++++++.++...|-+|.+....    ...+. .....+..-.+..|+.... .||++..
T Consensus       152 ~~~h~~--~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Q  223 (344)
T KOG4532|consen  152 FAVHNQ--NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQ  223 (344)
T ss_pred             ceeecc--ccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc----ceeeeeEecccCCCceeeeeccCcc-eEEEEec
Confidence            221111  12378999999 99999999999999999988632    12222 1222334446788888777 5899999


Q ss_pred             CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          285 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       285 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ||.+.|||++..+.+....          -.+...|.+.+..+.|++.|..=++-.+..      =+.+.+-|+++.
T Consensus       224 dg~~~I~DVR~~~tpm~~~----------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh------fs~~hv~D~R~~  284 (344)
T KOG4532|consen  224 DGTCAIYDVRNMATPMAEI----------SSTRPHHNGAFRVCRFSLYGLLDLLFISEH------FSRVHVVDTRNY  284 (344)
T ss_pred             CCcEEEEEecccccchhhh----------cccCCCCCCceEEEEecCCCcceEEEEecC------cceEEEEEcccC
Confidence            9999999999876654321          222356899999999998775433333322      278899998854

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.22  E-value=4.6e-08  Score=76.16  Aligned_cols=180  Identities=12%  Similarity=0.186  Sum_probs=110.3

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-------cCCCeeEEEecCCC-----CCeEEEeeCCC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-------HDADLHCVDWNPLD-----DNLILTGSADN  237 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-----~~~l~~~~~dg  237 (387)
                      -.-..++|+||+ .+||.+...|+|+++|+...+   +..+..       -...|..|.|.+..     ...|++-..+|
T Consensus        44 PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G  119 (282)
T PF15492_consen   44 PQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG  119 (282)
T ss_pred             chheEEEECCCC-cEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence            345789999999 899999999999999997644   222211       12456666665422     33666677888


Q ss_pred             eEEEEEeccCCCCCCCCceEEec--c-ccceEEEEEEcCCCCeeEEEecCCC----------eEEEEeCCCCCceeccCC
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFE--G-HSAAVLCVQWSPDKSSVFGSSAEDG----------LLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~ll~s~~~d~----------~i~vwd~~~~~~~~~~~~  304 (387)
                      .++=|-+...++.+ .+...++.  . +...|.++.++|..+.|++.|....          -+..|.+-+...-.....
T Consensus       120 ~L~Sy~vs~gt~q~-y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  120 QLRSYLVSVGTNQG-YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             eeeeEEEEcccCCc-ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence            88877764311100 33333332  2 3668999999999886665555332          366777655332222111


Q ss_pred             CCCC----C--Ccee-------eee-eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547          305 RTTN----Y--PAGL-------FFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       305 ~~~~----~--~~~~-------~~~-~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                      ....    .  ...+       ++. .......|..|..||||..|+        +...+|.|.+|++..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La--------~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA--------CIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE--------EEEcCCeEEEEecCcch
Confidence            1100    0  0000       111 122456899999999999777        55566999999999653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.20  E-value=1.8e-10  Score=87.53  Aligned_cols=167  Identities=14%  Similarity=0.242  Sum_probs=103.0

Q ss_pred             eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-----CCC
Q 016547          163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-----ADN  237 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~dg  237 (387)
                      ..+..|+++-.+-..+-.+ +-++++..||.+.+.+.+.-. ............--+.++.. .++.+.++.     .-+
T Consensus        83 ~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQD  159 (319)
T ss_pred             eeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHH-hhhhhcccccccccccceee-cccEEecCCcceEeecc
Confidence            3344444433333333333 569999999999999987622 11122211111112223333 344444432     123


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      ..+.|+++..     ...+...+. ...|.+++-+|..++++++|++||.+.+||+++..-              ....+
T Consensus       160 ~~~a~~~~p~-----~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------p~S~l  219 (319)
T KOG4714|consen  160 NFYANTLDPI-----KTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------PVSLL  219 (319)
T ss_pred             ceeeeccccc-----ccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------hHHHH
Confidence            4555665542     122222222 234999999999888999999999999999998522              24456


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..|+.+++.+.|+|..+--+.       +++.||.+-.||.+
T Consensus       220 ~ahk~~i~eV~FHpk~p~~Lf-------t~sedGslw~wdas  254 (319)
T KOG4714|consen  220 KAHKAEIWEVHFHPKNPEHLF-------TCSEDGSLWHWDAS  254 (319)
T ss_pred             HHhhhhhhheeccCCCchhee-------EecCCCcEEEEcCC
Confidence            789999999999998765555       55566999999988

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=1.1e-08  Score=96.69  Aligned_cols=271  Identities=14%  Similarity=0.186  Sum_probs=156.0

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCC-----------------------CcccccCCCCC-------CC-
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP-----------------------NRHAVLGATNS-------RP-   78 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~-----------------------~~~~~~~~~~~-------~~-   78 (387)
                      -.+.|.|++|+| |+.+||..+.+|++.+-.-+-..                       ....+.+....       .+ 
T Consensus       119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            478999999999 88999999989988876522110                       00001010000       00 


Q ss_pred             -----eEEEeccCCCceEEEEECCCCCEEEEecC---C---CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCC
Q 016547           79 -----DLILTGHQDNAEFALAMCPTEPYVLSGGK---D---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG  147 (387)
Q Consensus        79 -----~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (387)
                           ...+. +.+.. ..|+|-.||.|+|+.+.   .   +.++||+-+. ...                         
T Consensus       198 ~~~~d~~~~s-~dd~~-~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~-------------------------  249 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGR-VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQ-------------------------  249 (928)
T ss_pred             CCccccCccc-cCCCc-eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEE-------------------------
Confidence                 01122 33333 48999999999998764   2   5789998652 110                         


Q ss_pred             CCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC---CCeEEEEEccCCCCceeEEe--eccCCCeeEEEe
Q 016547          148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVE--KAHDADLHCVDW  222 (387)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~  222 (387)
                                     ..-..-.+--.+++|-|.| +++++...   ...|.+|.-..-+ .-...+  ......|..++|
T Consensus       250 ---------------stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~W  312 (928)
T PF04762_consen  250 ---------------STSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAW  312 (928)
T ss_pred             ---------------eccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEE
Confidence                           0001111223467999999 77777653   3456666533222 111122  234568999999


Q ss_pred             cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547          223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       223 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  301 (387)
                      ++ ++..||..-.|. |.+|-..+..    +-..+++... ...+..+.|+|....-|...+.+|.+..+++.-.-....
T Consensus       313 n~-ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~  386 (928)
T PF04762_consen  313 NS-DSEILAVWLEDR-VQLWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP  386 (928)
T ss_pred             CC-CCCEEEEEecCC-ceEEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence            99 999999977666 9999988732    3333444322 233455999997766566666667776555432111000


Q ss_pred             c--------------------CCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          302 Q--------------------GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       302 ~--------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .                    .......|+......-.-...|.+++|++++..++        +-..||.|.+|....
T Consensus       387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a--------vl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA--------VLTSDGSLSIYEWDL  457 (928)
T ss_pred             CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE--------EEECCCCEEEEEecC
Confidence            0                    00111122222222223456899999999987755        333458999998653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=1.5e-08  Score=84.55  Aligned_cols=289  Identities=17%  Similarity=0.217  Sum_probs=169.8

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCC---------------cEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-c
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSP---------------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-A   89 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~   89 (387)
                      ..+.|. .|..+.|+| .+++|.|-+..+               .+.+||..++            ..+..+.+.... .
T Consensus        67 ~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg------------~iv~sf~~~~q~~~  132 (561)
T COG5354          67 VRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG------------MIVFSFNGISQPYL  132 (561)
T ss_pred             eeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCc------------eeEeeccccCCccc
Confidence            334444 488899999 899999986644               3899999998            555555555442 1


Q ss_pred             eE-EEEECCCCCEEEEecCCCeEEEEEcCCCcCcccc---CCCc----ccCCCCCCc-eeccCCC--CCCCCCCCCCCCC
Q 016547           90 EF-ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT---DPAT----AKSAGSSGS-IIKQSPK--PGDGNDKAADGPS  158 (387)
Q Consensus        90 v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~~~~----~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~  158 (387)
                      .. -+.|+-+.+++|--. ...+.|+++........+   .+..    ...+.+... +......  .....+.++..+.
T Consensus       133 ~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~  211 (561)
T COG5354         133 GWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK  211 (561)
T ss_pred             ccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence            23 678888888877553 357899997322111110   0000    001111111 2222221  2233344444443


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEec----------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  228 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (387)
                      ...+....-....=-.+.|.+.|..+++-.-          ....+.+++++...   +.....-.++|...+|.| .++
T Consensus       212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p-~S~  287 (561)
T COG5354         212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEP-LSS  287 (561)
T ss_pred             CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecc-cCC
Confidence            3333222222222245778888844333211          13567888887554   223335678999999999 776


Q ss_pred             eEEEee--CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCC
Q 016547          229 LILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       229 ~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~  304 (387)
                      .+++.+  .+-.+.++|++.       .....+  .+..=+.+.|+|.++++|..|-  .-|.|.+||....-       
T Consensus       288 ~F~vi~g~~pa~~s~~~lr~-------Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf-------  351 (561)
T COG5354         288 RFAVISGYMPASVSVFDLRG-------NLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF-------  351 (561)
T ss_pred             ceeEEecccccceeeccccc-------ceEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce-------
Confidence            666655  578899999994       433333  3455678899999999875443  34779999987631       


Q ss_pred             CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                             .++..+.+.  ...-+.|+|+++++..+.-..  =--.|+.|+|||+..
T Consensus       352 -------~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~--k~~~Dn~i~l~~v~g  396 (561)
T COG5354         352 -------KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE--KLRVDNSIKLWDVYG  396 (561)
T ss_pred             -------EEEEEeecC--CceEeeccCCceEEEecCCCc--ccccCcceEEEEecC
Confidence                   122233332  334567999999888654211  113589999999984

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.18  E-value=1.1e-09  Score=88.57  Aligned_cols=164  Identities=17%  Similarity=0.229  Sum_probs=108.9

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  249 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  249 (387)
                      ...+..++.+ .+++.+..+....+++.+....  ...... .-....+++.+.. +......+..-|-++-+|+-... 
T Consensus        65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~-  140 (390)
T KOG3914|consen   65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSAD-  140 (390)
T ss_pred             ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeeccc-
Confidence            3445566666 7888888888877777765442  111111 2223344555555 55555555555555555554421 


Q ss_pred             CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee-eccCCCCeeEEE
Q 016547          250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFH  328 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~  328 (387)
                         ..+...+-+|-+.++.++|+||++++ +++..|..|+|-.+....               .+.. ..||..-|..++
T Consensus       141 ---~~~~~~~lGhvSml~dVavS~D~~~I-itaDRDEkIRvs~ypa~f---------------~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  141 ---SGRCEPILGHVSMLLDVAVSPDDQFI-ITADRDEKIRVSRYPATF---------------VIESFCLGHKEFVSTIS  201 (390)
T ss_pred             ---ccCcchhhhhhhhhheeeecCCCCEE-EEecCCceEEEEecCccc---------------chhhhccccHhheeeee
Confidence               12334455799999999999999975 599999999998776531               1222 357999999999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                      .-++.. |+        +||.|++|++||+.      +++.+.++
T Consensus       202 l~~~~~-Ll--------S~sGD~tlr~Wd~~------sgk~L~t~  231 (390)
T KOG3914|consen  202 LTDNYL-LL--------SGSGDKTLRLWDIT------SGKLLDTC  231 (390)
T ss_pred             eccCce-ee--------ecCCCCcEEEEecc------cCCccccc
Confidence            988643 55        78888999999999      67766544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=1.6e-10  Score=97.26  Aligned_cols=175  Identities=22%  Similarity=0.306  Sum_probs=121.8

Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      .+..+.||+. .|..++--.+.+-+++++.|++|++|.++.....                                 ..
T Consensus       727 rL~nf~GH~~-~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~  772 (1034)
T KOG4190|consen  727 RLCNFTGHQE-KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IG  772 (1034)
T ss_pred             eeecccCcHH-HhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------cc
Confidence            3456788987 5778777777888999999999999999753211                                 11


Q ss_pred             CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEE-EeeC
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLIL-TGSA  235 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~-~~~~  235 (387)
                      +..+..++..|+.+|.++.|..+. +.+++  -||.|++||.--++...........+.+..+..-++ +..++. .++.
T Consensus       773 tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa  849 (1034)
T KOG4190|consen  773 TSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA  849 (1034)
T ss_pred             cceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc
Confidence            223457788999999999999886 55655  478999999876652111111112223333333331 333444 4477


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ..+|+++|.+.      ..-..+++     +.+..+.+++..+.|.+ +|.+-.+|+|.+.|.+++
T Consensus       850 eSTVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  850 ESTVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARNG  908 (1034)
T ss_pred             hhhheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCCC
Confidence            89999999998      65555554     33456889999999997 467777999999999985

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=3.2e-10  Score=89.74  Aligned_cols=167  Identities=19%  Similarity=0.278  Sum_probs=119.5

Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++.+.+..+-+-|++++.   ...+. ..+.|.++.|.. .++++..|...|.|..+|+|... .+.+.+...+. |.+.
T Consensus       228 fs~G~sqqv~L~nvetg~---~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn-qG~~~~a~rly-h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH---QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN-QGNGWCAQRLY-HDSS  300 (425)
T ss_pred             ecccccceeEEEEeeccc---ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc-cCCCcceEEEE-cCcc
Confidence            556677889999999887   23343 667899999998 89999999999999999999741 12244555555 8999


Q ss_pred             EEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE--EEEccCCCeEEEEecC
Q 016547          266 VLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD--FHWNASDPWTVVSVSD  342 (387)
Q Consensus       266 i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~s~s~  342 (387)
                      |+++..-. ++++| ++.+.+|+|++||++..+..            .-+.+..||...-.-  +...+....++     
T Consensus       301 vtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~-----  362 (425)
T KOG2695|consen  301 VTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCK------------KSVMQYEGHVNLSAYLPAHVKEEEGSIF-----  362 (425)
T ss_pred             hhhhhhhccccceE-eeccCcCceeEeeehhhhcc------------cceeeeecccccccccccccccccceEE-----
Confidence            99998776 66665 47778999999999975332            126667777653332  33455556565     


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhhhhhcc----CceEEEeeec
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF----KAHVISCTSK  386 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~v~~~~f~  386 (387)
                         ++|.|...|||.+.      .+.++.++.--    +..+.+++|.
T Consensus       363 ---s~GdDcytRiWsl~------~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  363 ---SVGDDCYTRIWSLD------SGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ---EccCeeEEEEEecc------cCceeeccCCCCccccccccceehh
Confidence               66667999999999      78888776532    2245566653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=1.4e-09  Score=94.46  Aligned_cols=172  Identities=17%  Similarity=0.232  Sum_probs=126.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ...|+.|+....|++.|+.||.+++..+.+.........                         +-.......-+.+.+|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------------------laa~snLsmNQtLeGH   70 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------------------LAAASNLSMNQTLEGH   70 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------------------cccccccchhhhhccC
Confidence            468999999999999999999999998876422111111                         0011122333678999


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      ...|.-+.|+.+. +.|.+...+|.|.+|-+-.+.+-....-....+.|.+++|+. +|..+.....||.|.+=.+.   
T Consensus        71 ~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd---  145 (1189)
T KOG2041|consen   71 NASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD---  145 (1189)
T ss_pred             cceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec---
Confidence            9999999999887 789999999999999998877432222334567889999999 99999999999999887666   


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                          +..+..-.-.......+.|++|.+.+| .+-.+|.+.+||...
T Consensus       146 ----GNRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqg  187 (1189)
T KOG2041|consen  146 ----GNRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQG  187 (1189)
T ss_pred             ----cceecchhcchheccceeecccHHHHH-hhhcCCcEEEecccc
Confidence                333332221223345789999998654 677789999999764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.3e-07  Score=80.05  Aligned_cols=261  Identities=11%  Similarity=0.080  Sum_probs=144.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCce------eccCCCCCCCCCCCCCCCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSI------IKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~  158 (387)
                      .++..+++++|++++.+. +..++|++................    .+.+....      +..........+.+++..+
T Consensus        36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet  114 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET  114 (566)
T ss_pred             cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence            356889999999888876 668889888766322211111000    01110000      0000111122333444444


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEE-----
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILT-----  232 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----  232 (387)
                      ......+......-++..|++|.  .++.--..+.+++|++...+   ...-..|...|+.+.++|. ....+|+     
T Consensus       115 ~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~---~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  115 GVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFK---TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             ceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCcc---ceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence            32222222221222578888886  34444456789999987754   2222345667777777772 1223332     


Q ss_pred             eeCCCeEEEEEeccCCCC-------------------CC--------------------------------CCceEEecc
Q 016547          233 GSADNSVRMFDRRNLTSN-------------------GV--------------------------------GSPINKFEG  261 (387)
Q Consensus       233 ~~~dg~i~~~d~~~~~~~-------------------~~--------------------------------~~~~~~~~~  261 (387)
                      .+.-+.++||........                   ..                                ......+. 
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-  268 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-  268 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence            233345666654410000                   00                                11111111 


Q ss_pred             ccceEEEEEEcCCCCeeEE-EecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          262 HSAAVLCVQWSPDKSSVFG-SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ..++|.++.|+|+++.+.+ -|-.-.++.|||++-.                .++.+  .+++-+++-|+|.|+++++++
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------------~v~df--~egpRN~~~fnp~g~ii~lAG  330 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------------PVFDF--PEGPRNTAFFNPHGNIILLAG  330 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------------EeEeC--CCCCccceEECCCCCEEEEee
Confidence            3678999999999976433 3445678999999862                23333  356778999999999998877


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                           -|-.-|.|-|||+.      +.+++..+..-..  +-++|+|
T Consensus       331 -----FGNL~G~mEvwDv~------n~K~i~~~~a~~t--t~~eW~P  364 (566)
T KOG2315|consen  331 -----FGNLPGDMEVWDVP------NRKLIAKFKAANT--TVFEWSP  364 (566)
T ss_pred             -----cCCCCCceEEEecc------chhhccccccCCc--eEEEEcC
Confidence                 44567999999999      6777776654332  3344554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.13  E-value=7.2e-08  Score=80.09  Aligned_cols=119  Identities=14%  Similarity=0.202  Sum_probs=96.9

Q ss_pred             cCCCCCeEEEEEccCCCeeEEEecCCC-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547          166 NGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~  244 (387)
                      -+|...|.-..+..++ .-++.|..|| .+-++|.++++   ...+...-+.|.++..+| +|.+++++.....|-++|+
T Consensus       356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEe
Confidence            3566778888887777 5788999999 89999999887   556666778999999999 9999999999999999999


Q ss_pred             ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC----eEEEEeCCCC
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKV  296 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~----~i~vwd~~~~  296 (387)
                      .+      +.....-+...+-|+.++|+|++++ +|-+--+|    .|+++|+...
T Consensus       431 dn------gnv~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         431 DN------GNVRLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             cC------CCeeEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCC
Confidence            98      6555544556778999999999996 45554444    5999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.13  E-value=3.5e-07  Score=74.22  Aligned_cols=226  Identities=10%  Similarity=0.078  Sum_probs=138.9

Q ss_pred             EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC-CCCCEEEEecCCCeEEEE
Q 016547           36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKSVVLW  114 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~-~~~~~l~s~~~d~~i~vw  114 (387)
                      +..|.+.++.++++--..+.|..|+..+..            . ..+....   ...+.+. +++. |+.+..+ .+.++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~------------~-~~~~~~~---~~G~~~~~~~g~-l~v~~~~-~~~~~   65 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE------------V-EVIDLPG---PNGMAFDRPDGR-LYVADSG-GIAVV   65 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE------------E-EEEESSS---EEEEEEECTTSE-EEEEETT-CEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe------------E-EEEecCC---CceEEEEccCCE-EEEEEcC-ceEEE
Confidence            567787688888888889999999998872            1 1122221   3577777 5654 4444444 44555


Q ss_pred             EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cC-CCCCeEEEEEccCCCeeEEEecCC
Q 016547          115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NG-HEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      |..++....                                      +...  .. .....+.+++.|+| ++.++....
T Consensus        66 d~~~g~~~~--------------------------------------~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~  106 (246)
T PF08450_consen   66 DPDTGKVTV--------------------------------------LADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGG  106 (246)
T ss_dssp             ETTTTEEEE--------------------------------------EEEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred             ecCCCcEEE--------------------------------------EeeccCCCcccCCCceEEEcCCC-CEEEEecCC
Confidence            877642211                                      1111  11 34568899999999 666665433


Q ss_pred             --------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE-EeeCCCeEEEEEeccCCCCC-CCCceEEecc
Q 016547          192 --------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNG-VGSPINKFEG  261 (387)
Q Consensus       192 --------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~  261 (387)
                              |.|..++.. ++   .......-...+.|+|+| +++.|+ +-+..+.|..|++....... ..+.+..+..
T Consensus       107 ~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~  181 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG  181 (246)
T ss_dssp             BCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred             CccccccccceEEECCC-Ce---EEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence                    557777766 33   222333345678999999 887665 56678889999997521100 0011222232


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE-ccCCCeEEEEe
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV  340 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~s~  340 (387)
                      ..+..-.+++..+|+ |+++....+.|.++|.+.                +++....-....+++++| -++...|+++.
T Consensus       182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G----------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG----------------KLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS----------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc----------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            233578899999998 566666789999999873                223333333458899999 47778888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=1.8e-07  Score=81.23  Aligned_cols=194  Identities=10%  Similarity=0.057  Sum_probs=113.4

Q ss_pred             CcEEEEEecCCCCc-EEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ec
Q 016547           32 GEVNRIRELPQNTK-IVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GG  106 (387)
Q Consensus        32 ~~v~~i~~~~~~~~-~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~  106 (387)
                      +.+..-.|+| +++ .++..+.   +..|.++|+.++            +..... ...+ ......|+|||+.|+. .+
T Consensus       188 ~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg------------~~~~lt-~~~g-~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        188 GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTG------------KKEKIA-SSQG-MLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCC------------cEEEEe-cCCC-cEEeeEECCCCCEEEEEEc
Confidence            4678899999 665 3554332   357889999877            222222 2333 3457789999987764 33


Q ss_pred             CC--CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          107 KD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       107 ~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      .+  ..|.++|+.++..                                         ..+..+........|+|||..+
T Consensus       253 ~~g~~~Iy~~dl~~g~~-----------------------------------------~~LT~~~~~d~~p~~SPDG~~I  291 (419)
T PRK04043        253 PKGQPDIYLYDTNTKTL-----------------------------------------TQITNYPGIDVNGNFVEDDKRI  291 (419)
T ss_pred             cCCCcEEEEEECCCCcE-----------------------------------------EEcccCCCccCccEECCCCCEE
Confidence            34  4566667654321                                         1122222222345799999666


Q ss_pred             EEEecCCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC---------CeEEEEEeccCCCCCCC
Q 016547          185 FCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       185 l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~  253 (387)
                      +++....+  .|.+.|+..++.  .+.. ....  ....|+| +++.++..+..         ..|.+.|+..      +
T Consensus       292 ~F~Sdr~g~~~Iy~~dl~~g~~--~rlt-~~g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~------g  359 (419)
T PRK04043        292 VFVSDRLGYPNIFMKKLNSGSV--EQVV-FHGK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNS------D  359 (419)
T ss_pred             EEEECCCCCceEEEEECCCCCe--EeCc-cCCC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCC------C
Confidence            66665544  577778877662  1211 1111  1248999 88888777654         2677778765      3


Q ss_pred             CceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCC
Q 016547          254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK  295 (387)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~  295 (387)
                      . ...+... .......|+|||+.++.+....+.  +.+.++..
T Consensus       360 ~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        360 Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            3 3334322 223358899999987655544444  55555544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=7.7e-08  Score=92.84  Aligned_cols=225  Identities=12%  Similarity=0.168  Sum_probs=132.7

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec------c-CCCceEEEEECC-CCCEEEEe
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------H-QDNAEFALAMCP-TEPYVLSG  105 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~------h-~~~~v~~~~~~~-~~~~l~s~  105 (387)
                      ...+++.++++.+.++-...+.|+++|..++... .+.+..  .......+      . -..+ ..++++| ++..+++.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G--~~g~~~~gg~~~~~~~ln~P-~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNG--TKGSDYQGGKKGTSQVLNSP-WDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccC--cccCCCCCChhhhHhhcCCC-eEEEEecCCCeEEEEE
Confidence            4778888733334444455678999998765211 110000  00000000      0 0112 4789999 55566777


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.++.|++||..++.......         .+            .........     .....-.....|+++|++..++
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G---------~G------------~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LY  755 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSG---------DG------------YERNLNGSS-----GTSTSFAQPSGISLSPDLKELY  755 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEec---------CC------------ccccCCCCc-----cccccccCccEEEEeCCCCEEE
Confidence            778999999987653211000         00            000000000     0001123467899999985677


Q ss_pred             EEecCCCeEEEEEccCCCCceeE-----------Eeec--------cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIK-----------VEKA--------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~--------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ++-+.++.|++||+.++......           .+..        .-.....+++++ +++++++-+.++.|++||..+
T Consensus       756 VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        756 IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             EEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCC
Confidence            78888899999999876521110           0000        012346889999 889888888999999999875


Q ss_pred             CCCCCCCCceEEecc--------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          247 LTSNGVGSPINKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                            +... .+.+              .-.....++++++|+ ++++-+.++.|++||+.+..
T Consensus       835 ------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        835 ------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence                  3222 2211              112467899999998 67788889999999998753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=2.8e-09  Score=86.18  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=109.8

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      ...+..++.++++|.+..+....++++......                                    .++...+. -.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~------------------------------------~kl~~~~~-v~  107 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG------------------------------------AKLLDVSC-VP  107 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCc------------------------------------ceeeeEee-cc
Confidence            445677888899998888888778877643210                                    01111111 11


Q ss_pred             CCeEEEEEccCCCeeEEE---ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          170 DTVEDVTFCPSSAQEFCS---VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ..-+++.+..+. .....   .+....+.+|....+.   .....+|-+.++.++++| ++++++++..|..|++-....
T Consensus       108 ~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~~---~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa  182 (390)
T KOG3914|consen  108 KRPTAISFIRED-TSVLVADKAGDVYSFDILSADSGR---CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA  182 (390)
T ss_pred             cCcceeeeeecc-ceEEEEeecCCceeeeeecccccC---cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCc
Confidence            222334444333 22333   3444555566555433   456678999999999999 999999999999999977665


Q ss_pred             CCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547          247 LTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       247 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  301 (387)
                            ...+..+ -+|..-|..++.-++..  |++++.|+++++||+.++....+
T Consensus       183 ------~f~IesfclGH~eFVS~isl~~~~~--LlS~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  183 ------TFVIESFCLGHKEFVSTISLTDNYL--LLSGSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             ------ccchhhhccccHhheeeeeeccCce--eeecCCCCcEEEEecccCCcccc
Confidence                  4444444 46999999999987754  56999999999999999776643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=1.6e-09  Score=85.83  Aligned_cols=124  Identities=14%  Similarity=0.235  Sum_probs=93.6

Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      .++.|.++.|...+ ++++.|+.+|.|..+|++...+-  -.....-|.+.|+++..-..++++|++.+.+|.|.+||+|
T Consensus       251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            45678899998877 79999999999999999986310  1122235899999998876678999999999999999999


Q ss_pred             cCCCCCCCCceEEeccccceEEE--EEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLC--VQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ..+.   ++-+.++++|-..-.-  +-..+.... ++++++|...+||.++.+
T Consensus       330 ~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg~-I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  330 ATKC---KKSVMQYEGHVNLSAYLPAHVKEEEGS-IFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhc---ccceeeeecccccccccccccccccce-EEEccCeeEEEEEecccC
Confidence            8322   2338888888543322  233455554 457999999999999985

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=3.3e-07  Score=71.54  Aligned_cols=213  Identities=14%  Similarity=0.157  Sum_probs=121.7

Q ss_pred             EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--CceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547           38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGKDKSVVLWS  115 (387)
Q Consensus        38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~~~~~~~~~~l~s~~~d~~i~vwd  115 (387)
                      +-++ +|++||.- .|..|.|=...+.-.          ..+...+.+.+  ..=.-++||||+..||.+...|+|+++|
T Consensus         4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~----------si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfd   71 (282)
T PF15492_consen    4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFS----------SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFD   71 (282)
T ss_pred             eecC-CCcEEEEE-eccEEEEEeccCCch----------heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEe
Confidence            3345 88888775 556677665554411          12222222221  1235799999999999999999999999


Q ss_pred             cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-----CeeEEEecC
Q 016547          116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVGD  190 (387)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~  190 (387)
                      +...... ...+....                                 ...-...|.++.|.+-.     ...|++-..
T Consensus        72 l~g~~lf-~I~p~~~~---------------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y  117 (282)
T PF15492_consen   72 LMGSELF-VIPPAMSF---------------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVINY  117 (282)
T ss_pred             cccceeE-EcCccccc---------------------------------CCccccceeeeEeeccccccccceeEEEEec
Confidence            9753221 11110000                                 00112334444443321     134666677


Q ss_pred             CCeEEEEEccCCC---CceeE--Eee-ccCCCeeEEEecCCCCCeEEEeeCC----C-------eEEEEEeccCCC----
Q 016547          191 DSCLILWDARVGT---SPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSAD----N-------SVRMFDRRNLTS----  249 (387)
Q Consensus       191 dg~i~iwd~~~~~---~~~~~--~~~-~~~~~i~~~~~~~~~~~~l~~~~~d----g-------~i~~~d~~~~~~----  249 (387)
                      +|.++-|-+..+.   -....  .+. .+...|.++.++| ..++|++|+..    +       -+.-|.+-+...    
T Consensus       118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence            7888777664321   11112  222 2467899999999 77888777642    1       144555433110    


Q ss_pred             -----CCCC-C----c---eEEe------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          250 -----NGVG-S----P---INKF------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       250 -----~~~~-~----~---~~~~------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                           .... .    .   +..+      ......|..|..||||. +||+...+|.|.+|++.....
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence                 0000 0    0   0010      12356799999999999 578999999999999998543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.02  E-value=1.9e-06  Score=71.98  Aligned_cols=257  Identities=12%  Similarity=0.082  Sum_probs=139.4

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC----------CCeEEEEEcCCCcCcc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----------DKSVVLWSIQDHITSS  123 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~  123 (387)
                      ++|.+.|.++.            +.+..+..-.. + ..+ ++||++.|+.+..          +..|.+||..+.....
T Consensus        27 ~~v~ViD~~~~------------~v~g~i~~G~~-P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~   91 (352)
T TIGR02658        27 TQVYTIDGEAG------------RVLGMTDGGFL-P-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA   91 (352)
T ss_pred             ceEEEEECCCC------------EEEEEEEccCC-C-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence            89999999988            45555544333 2 234 9999998876654          7899999998765432


Q ss_pred             ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-C-CCeEEEEEccC
Q 016547          124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D-DSCLILWDARV  201 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~  201 (387)
                      .....                              .++..  . ....-..++++|+| +++++.. . +..|.+.|+.+
T Consensus        92 ~i~~p------------------------------~~p~~--~-~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~  137 (352)
T TIGR02658        92 DIELP------------------------------EGPRF--L-VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEG  137 (352)
T ss_pred             EEccC------------------------------CCchh--h-ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCC
Confidence            22110                              00000  0 01223468899999 5555443 4 79999999999


Q ss_pred             CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc-eE---EeccccceEE-EEEEcC-CC
Q 016547          202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-IN---KFEGHSAAVL-CVQWSP-DK  275 (387)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~---~~~~~~~~i~-~~~~~~-~~  275 (387)
                      ++  .+....- .....-...++ + .. .+-+.||......+...     ++. ..   .+.....++. .-.|.+ +|
T Consensus       138 ~k--vv~ei~v-p~~~~vy~t~e-~-~~-~~~~~Dg~~~~v~~d~~-----g~~~~~~~~vf~~~~~~v~~rP~~~~~dg  206 (352)
T TIGR02658       138 KA--FVRMMDV-PDCYHIFPTAN-D-TF-FMHCRDGSLAKVGYGTK-----GNPKIKPTEVFHPEDEYLINHPAYSNKSG  206 (352)
T ss_pred             Cc--EEEEEeC-CCCcEEEEecC-C-cc-EEEeecCceEEEEecCC-----CceEEeeeeeecCCccccccCCceEcCCC
Confidence            88  4444432 22222222222 1 11 22334555544433331     111 11   1111000000 003455 88


Q ss_pred             CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-----ccCCCCeeEEEEccCCCeEEEEecCC-CCC-CC
Q 016547          276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNASDPWTVVSVSDD-CDS-TG  348 (387)
Q Consensus       276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~s~s~d-~~t-g~  348 (387)
                      ++++++.  .|.|.+.|+.........       +... ...     .-..+...-++++|+++++++..... ..| -.
T Consensus       207 ~~~~vs~--eG~V~~id~~~~~~~~~~-------~~~~-~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~  276 (352)
T TIGR02658       207 RLVWPTY--TGKIFQIDLSSGDAKFLP-------AIEA-FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT  276 (352)
T ss_pred             cEEEEec--CCeEEEEecCCCcceecc-------eeee-ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence            8776554  399999997653222110       0000 000     01233445599999999988743110 000 01


Q ss_pred             CCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          349 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       349 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..+.|.++|..      +++.+..+.. ...+..++|+|
T Consensus       277 ~~~~V~ViD~~------t~kvi~~i~v-G~~~~~iavS~  308 (352)
T TIGR02658       277 ASRFLFVVDAK------TGKRLRKIEL-GHEIDSINVSQ  308 (352)
T ss_pred             CCCEEEEEECC------CCeEEEEEeC-CCceeeEEECC
Confidence            22589999998      7888887763 45788888876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.3e-07  Score=83.23  Aligned_cols=249  Identities=16%  Similarity=0.135  Sum_probs=166.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC----------
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE----------   99 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~----------   99 (387)
                      |...-.++.|+| .| ++|-|+.. .|.+-|..+.            +.+..+..|.. .|+.+.|.|-.          
T Consensus        14 ~~sN~~A~Dw~~-~G-LiAygshs-lV~VVDs~s~------------q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~   77 (1062)
T KOG1912|consen   14 SRSNRNAADWSP-SG-LIAYGSHS-LVSVVDSRSL------------QLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS   77 (1062)
T ss_pred             CcccccccccCc-cc-eEEEecCc-eEEEEehhhh------------hhhhccccCcc-ceeEEEeccCCCchhccCccc
Confidence            444467888888 44 77777654 7888898887            77788888886 79999998731          


Q ss_pred             --CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547          100 --PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus       100 --~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                        -.|+++...|.|.+||+.....                                        +..+..|.+++..++|
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~s~----------------------------------------~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLASV----------------------------------------INWLSHSNDSVQDLCW  117 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhhhh----------------------------------------hhhhcCCCcchhheee
Confidence              2577888889999999975422                                        2345567888999999


Q ss_pred             ccC---CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC-CCC
Q 016547          178 CPS---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-GVG  253 (387)
Q Consensus       178 ~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~  253 (387)
                      -+.   ...+|+.-....++.+|+..+++  ..-..........|+.++|.+.+.+..-+..|.+.+-+.-....+ ..+
T Consensus       118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg  195 (1062)
T KOG1912|consen  118 VPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG  195 (1062)
T ss_pred             eeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence            763   33567777788899999999998  333333344556779999999999988888898877765433221 112


Q ss_pred             CceEEeccccc-------------------------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547          254 SPINKFEGHSA-------------------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  308 (387)
Q Consensus       254 ~~~~~~~~~~~-------------------------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  308 (387)
                      +.++.-..|..                         ....++|+|.-++++ -......+.|+|++-.            
T Consensus       196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~------------  262 (1062)
T KOG1912|consen  196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYE------------  262 (1062)
T ss_pred             eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhh------------
Confidence            32222222221                         012356788766544 3334778999999864            


Q ss_pred             CCceeeeeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCCCCceEEEEecCC
Q 016547          309 YPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                         .++....-..+.+.-+.|-|+.+  .|+        ++-.||.+.+|--..
T Consensus       263 ---~~l~vvpier~~akfv~vlP~~~rd~Lf--------clH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  263 ---CCLAVVPIERGGAKFVDVLPDPRRDALF--------CLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ---ceeEEEEeccCCcceeEeccCCCcceEE--------EEecCCeEEEEEeec
Confidence               22333333344555666766654  455        566779999997663

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.01  E-value=7.1e-07  Score=72.44  Aligned_cols=216  Identities=15%  Similarity=0.194  Sum_probs=133.4

Q ss_pred             EEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           92 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        92 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      +..|.+ ++.++++--..+.|..|+..++...                                         .+..  .
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------------------------------------~~~~--~   40 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------------------------------------VIDL--P   40 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------------------------------------EEES--S
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------------------------------------EEec--C
Confidence            678887 6666677667899999998764321                                         1111  1


Q ss_pred             CeEEEEEc-cCCCeeEEEecCCCeEEEEEccCCCCceeEEee--c-cCCCeeEEEecCCCCCeEEEeeCC--------Ce
Q 016547          171 TVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--A-HDADLHCVDWNPLDDNLILTGSAD--------NS  238 (387)
Q Consensus       171 ~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~  238 (387)
                      ....+.+. +++ .++++ ... .+.++|..+++...+....  . .....+.++++| ++++.++....        |.
T Consensus        41 ~~~G~~~~~~~g-~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   41 GPNGMAFDRPDG-RLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             SEEEEEEECTTS-EEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE
T ss_pred             CCceEEEEccCC-EEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc
Confidence            26677777 565 54444 444 4555598887633333332  1 345678999999 89877776544        34


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      |..++..       ++ +......-...+.|+|+|+++.|+++-+..+.|..+++........        ....+..+.
T Consensus       117 v~~~~~~-------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~--------~~~~~~~~~  180 (246)
T PF08450_consen  117 VYRIDPD-------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS--------NRRVFIDFP  180 (246)
T ss_dssp             EEEEETT-------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE--------EEEEEEE-S
T ss_pred             eEEECCC-------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee--------eeeeEEEcC
Confidence            5555444       12 2222223345789999999998888888999999999975432110        012223333


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      ...+..-.+++..+|...++..        ..+.|.+++.+       ++.+.++..-...+++++|
T Consensus       181 ~~~g~pDG~~vD~~G~l~va~~--------~~~~I~~~~p~-------G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  181 GGPGYPDGLAVDSDGNLWVADW--------GGGRIVVFDPD-------GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             SSSCEEEEEEEBTTS-EEEEEE--------TTTEEEEEETT-------SCEEEEEE-SSSSEEEEEE
T ss_pred             CCCcCCCcceEcCCCCEEEEEc--------CCCEEEEECCC-------ccEEEEEcCCCCCEEEEEE
Confidence            3334578899999987655322        23799999877       7777777655568888888

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=4.1e-08  Score=86.66  Aligned_cols=187  Identities=17%  Similarity=0.229  Sum_probs=131.1

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      ..+.+.|++++   +.+++-|+-+|.|++.+....             + .....|...       ..+|.++++|+.||
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-------------~-~~~~~~s~~-------~~~Gey~asCS~DG   93 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-------------P-KTNFDHSSS-------ILEGEYVASCSDDG   93 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCc-------------c-ccccccccc-------ccCCceEEEecCCC
Confidence            45777888874   478999999999999998765             1 223334331       55899999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC----CCeeE
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS----SAQEF  185 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l  185 (387)
                      +|.|-.+-+.....                                         ......++.+++++|+    ..+.+
T Consensus        94 kv~I~sl~~~~~~~-----------------------------------------~~df~rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   94 KVVIGSLFTDDEIT-----------------------------------------QYDFKRPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             cEEEeeccCCccce-----------------------------------------eEecCCcceeEEeccchhhhhhhhe
Confidence            99998886543321                                         1123568999999998    23579


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc--
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--  263 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--  263 (387)
                      ++|+.-| +.++.-+-.............++|.++.|   .++++|=++.+| |++||...      .+.+..++...  
T Consensus       133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~------~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPT------RQRLTNIPPPSQS  201 (846)
T ss_pred             eecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccc------cceeeccCCCCCC
Confidence            9999988 77776443221122245567789999999   578999988888 89999987      55555554322  


Q ss_pred             ----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          264 ----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       264 ----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                          .....+.|.++.+  |+.|- ..+|+|..++.
T Consensus       202 ~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIKK  234 (846)
T ss_pred             CCcccCCCceEecCCCe--EEEec-CCeEEEEEEec
Confidence                2235688888776  33554 44799999884

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=9.3e-09  Score=84.54  Aligned_cols=271  Identities=11%  Similarity=0.068  Sum_probs=173.8

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+-|.+.|+.+...  ..+++.+++.||.++.|.-..-.         ....+..+..|-. .|.+++.+-++..+.|.+
T Consensus         5 symhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~   72 (558)
T KOG0882|consen    5 SYMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLG-VILSLAVSYDGWLFRSVE   72 (558)
T ss_pred             hhcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHH-HHHhhhccccceeEeecc
Confidence            34689999888643  56799999999999999755421         1134445666776 788999999999999977


Q ss_pred             C-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC--e
Q 016547          107 K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--Q  183 (387)
Q Consensus       107 ~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~  183 (387)
                      . |..++++|+++-......                                      .+..-.+.+. ...++...  .
T Consensus        73 d~Dhs~KvfDvEn~Dminmi--------------------------------------KL~~lPg~a~-wv~skGd~~s~  113 (558)
T KOG0882|consen   73 DPDHSVKVFDVENFDMINMI--------------------------------------KLVDLPGFAE-WVTSKGDKISL  113 (558)
T ss_pred             CcccceeEEEeeccchhhhc--------------------------------------ccccCCCceE-EecCCCCeeee
Confidence            7 999999999864221100                                      0001111111 11122110  2


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc-CCCCC--------CCC
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNG--------VGS  254 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~--------~~~  254 (387)
                      +.++.-.++.+.++|-....++.......|.++|..+.+.+ .+..+++....|.|.-|.... .+...        ...
T Consensus       114 IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  114 IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            23334467899999988777666677778999999999999 899999999999999998873 11000        001


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC------Ccee-----------eeee
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY------PAGL-----------FFQH  317 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~-----------~~~~  317 (387)
                      -+..+........++.|+|++.. +++-+.|..|+++++..+...+.........      +..+           -..+
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverel  271 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVEREL  271 (558)
T ss_pred             hhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhH
Confidence            11122223456789999999996 5788899999999999865544333211110      0000           0112


Q ss_pred             ccCCC-CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~-~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..|.. .-+.+.|...+++|+...-         =-|++.++.
T Consensus       272 ek~~~~~~~~~~fdes~~flly~t~---------~gikvin~~  305 (558)
T KOG0882|consen  272 EKHGSTVGTNAVFDESGNFLLYGTI---------LGIKVINLD  305 (558)
T ss_pred             hhhcCcccceeEEcCCCCEEEeecc---------eeEEEEEee
Confidence            22333 3466778888998885322         246777776

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.99  E-value=7.6e-07  Score=82.55  Aligned_cols=237  Identities=15%  Similarity=0.250  Sum_probs=132.8

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      +.|.++.|.- +++.++.+..+|.|.+-|.++.              ....-|..+..|.+++|+||++.++..+.++++
T Consensus        69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~--------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tl  133 (1265)
T KOG1920|consen   69 DEIVSVQFLA-DTNSICVITALGDIILVDPETL--------------ELEIVGNVDNGISAASWSPDEELLALITGRQTL  133 (1265)
T ss_pred             cceEEEEEec-ccceEEEEecCCcEEEEccccc--------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEE
Confidence            5899999988 7777888888999999887776              223344444468999999999999888877777


Q ss_pred             EEEEcC----CCcCc-cccCCCcccCCCCCCc---eeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          112 VLWSIQ----DHITS-SATDPATAKSAGSSGS---IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       112 ~vwd~~----~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      .+-+-.    ..+.. ............+-+.   ...-..+..   .........+......- .+.=+.|.|-.|| .
T Consensus       134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~---~~~~~~~~ek~~~~~~~-~~~~~~IsWRgDg-~  208 (1265)
T KOG1920|consen  134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQ---AARQKIEKEKALEQIEQ-DDHKTSISWRGDG-E  208 (1265)
T ss_pred             EEEeccccchhccccccccccccccceecccccceeeecchhhh---cccccccccccccchhh-ccCCceEEEccCC-c
Confidence            665431    00000 0000000000000000   000000000   00000000000000011 1223468999998 7


Q ss_pred             eEEE-----ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEEeccCCCCCCCCc
Q 016547          184 EFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       184 ~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +|++     ......|++||-+ +..  ...-....+.-.+++|-| .|.++++-.   .|+.|.+|.-+-...   +..
T Consensus       209 ~fAVs~~~~~~~~RkirV~drE-g~L--ns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h---g~f  281 (1265)
T KOG1920|consen  209 YFAVSFVESETGTRKIRVYDRE-GAL--NSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH---GEF  281 (1265)
T ss_pred             EEEEEEEeccCCceeEEEeccc-chh--hcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc---ccc
Confidence            7776     2233789999977 431  112222333446899999 898888754   356788887653211   222


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEE---ecCCCeEEEEeCCCC
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLNIWDYEKV  296 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s---~~~d~~i~vwd~~~~  296 (387)
                      ...+......+..++|+.++. +||.   ......|++|-+.+.
T Consensus       282 ~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  282 VLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence            222333344589999999998 5666   455566999998774

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.97  E-value=3e-06  Score=68.35  Aligned_cols=204  Identities=13%  Similarity=0.193  Sum_probs=127.4

Q ss_pred             cEEEEEecCCCCcEEEEecCCCc-EEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-----
Q 016547           33 EVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-----  106 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~-----  106 (387)
                      ....++.+|..+..++.+-.-|+ ..+||..+++....+..    ..-+.|.+|       -.|++||++|++.-     
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----~~gRHFyGH-------g~fs~dG~~LytTEnd~~~   74 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----PPGRHFYGH-------GVFSPDGRLLYTTENDYET   74 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----CCCCEEecC-------EEEcCCCCEEEEeccccCC
Confidence            34567778877778888877664 56899988843322211    222334444       46899999999864     


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      ..|.|-|||....                                       .+.+..+..|--.-..+.+.|++ ..|+
T Consensus        75 g~G~IgVyd~~~~---------------------------------------~~ri~E~~s~GIGPHel~l~pDG-~tLv  114 (305)
T PF07433_consen   75 GRGVIGVYDAARG---------------------------------------YRRIGEFPSHGIGPHELLLMPDG-ETLV  114 (305)
T ss_pred             CcEEEEEEECcCC---------------------------------------cEEEeEecCCCcChhhEEEcCCC-CEEE
Confidence            3588999999732                                       12223444454455567788887 3444


Q ss_pred             Ee------------------cCCCeEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCCeEEEeeCCCe-------E
Q 016547          187 SV------------------GDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNS-------V  239 (387)
Q Consensus       187 ~~------------------~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~-------i  239 (387)
                      ++                  ..+..+.+.|..+++......+  ..|...|.-+++.+ ++..++..-..|.       |
T Consensus       115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLv  193 (305)
T PF07433_consen  115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLV  193 (305)
T ss_pred             EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeE
Confidence            43                  1234455556666662222223  34777899999998 7766555544332       2


Q ss_pred             EEEEeccCCCCCCCCceEEe-------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          240 RMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      -+++.        +..+..+       ......+-+|++++++..+.+|+-..+.+.+||..+.
T Consensus       194 a~~~~--------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  194 ALHRR--------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             EEEcC--------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            22322        2222222       2234678999999999988788888999999999885

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=4e-07  Score=81.24  Aligned_cols=204  Identities=9%  Similarity=0.134  Sum_probs=134.1

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC---
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK---  109 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~---  109 (387)
                      .|.|+  ++ .+..++.|+.+|.|.+.+-.-             +.++.++.+..+.|..+....+..+|++.+.|+   
T Consensus        27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~s~-------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n   90 (933)
T KOG2114|consen   27 AISCC--SS-STGSVVIGTADGRVVILNSSF-------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN   90 (933)
T ss_pred             ceeEE--cC-CCceEEEeeccccEEEecccc-------------eeeehheecchhhhhHhhcccCceEEEEEeecCCCC
Confidence            56665  55 677899999999888877432             344667777765344444444446788777664   


Q ss_pred             --eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc---e----eecCCCCCeEEEEEccC
Q 016547          110 --SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR---G----IYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       110 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~v~~~~~~~~  180 (387)
                        .+++|+++.......                                  ...+   .    .......++.+++.+.+
T Consensus        91 p~llkiw~lek~~~n~s----------------------------------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~  136 (933)
T KOG2114|consen   91 PVLLKIWDLEKVDKNNS----------------------------------PQCLYEHRIFTIKNPTNPSPASSLAVSED  136 (933)
T ss_pred             ceEEEEecccccCCCCC----------------------------------cceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence              489999985421100                                  0111   0    11123567889999988


Q ss_pred             CCeeEEEecCCCeEEEEE--ccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc-eE
Q 016547          181 SAQEFCSVGDDSCLILWD--ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-IN  257 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~  257 (387)
                      - ..+++|-.+|.|..+.  +...+............+|+.+++.. ++..++-......|.+|.+..      ..+ ..
T Consensus       137 l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g------r~p~~~  208 (933)
T KOG2114|consen  137 L-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG------RTPSLK  208 (933)
T ss_pred             c-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC------CCccee
Confidence            6 8899999999999984  22222112233334567999999987 676644444566799999985      333 44


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+..|+...+|..|++....++ +++ +..+.+||....
T Consensus       209 ~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  209 VLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence            4778888999999998766444 443 567999998864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=1.3e-06  Score=77.19  Aligned_cols=208  Identities=15%  Similarity=0.182  Sum_probs=134.8

Q ss_pred             ecCCCcEEEEEecCC-----------CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547           28 IIHPGEVNRIRELPQ-----------NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC   96 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~-----------~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~   96 (387)
                      ..|+..|+.+.|.|.           ..-+||++...|.|.+||....            ..+..+..|.+ ++..++|-
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~------------s~~~~l~~~~~-~~qdl~W~  118 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA------------SVINWLSHSND-SVQDLCWV  118 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh------------hhhhhhcCCCc-chhheeee
Confidence            348899999999882           2236788888999999999988            55566666666 67899997


Q ss_pred             C---CC-CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547           97 P---TE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  172 (387)
Q Consensus        97 ~---~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  172 (387)
                      +   +. ..|+.-..-.++.+|+..++.......                                        ......
T Consensus       119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~----------------------------------------ys~~iL  158 (1062)
T KOG1912|consen  119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD----------------------------------------YSHEIL  158 (1062)
T ss_pred             eccCcchheeEEecCCcEEEEEEccCCceeeccc----------------------------------------cCCcce
Confidence            6   33 355655567899999998775433221                                        223456


Q ss_pred             EEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----eeEEeeccCC----------------C---------eeEEEe
Q 016547          173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDA----------------D---------LHCVDW  222 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~----------------~---------i~~~~~  222 (387)
                      .|+.+.|.+...+..-+..|.+.+-+.-....+     ..+....|..                .         ...++|
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            678888876666766666777776654321110     1111111211                0         113567


Q ss_pred             cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCC
Q 016547          223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       223 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~  295 (387)
                      +|.-.+.+ .......+.++|++-      ..++....-..+.+.-+.+-|+++. .|.+.-.||.+.+|-.+.
T Consensus       239 ~p~~rn~l-fi~~prellv~dle~------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  239 SPHWRNIL-FITFPRELLVFDLEY------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ChhhhceE-EEEeccceEEEcchh------hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            88333443 445677799999997      5666666555566666777776532 345788899999997655

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.93  E-value=8.8e-10  Score=94.45  Aligned_cols=210  Identities=15%  Similarity=0.282  Sum_probs=137.0

Q ss_pred             CCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEec--
Q 016547           31 PGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG--  106 (387)
Q Consensus        31 ~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~--  106 (387)
                      ...+.|++++-. +..+++.|..+|.|.+-.+......          .-....+|.. ..++++|++ |...||.|-  
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar-~Ct~lAwneLDtn~LAagldk  124 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYAR-PCTSLAWNELDTNHLAAGLDK  124 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccc-cccccccccccHHHHHhhhhh
Confidence            455778876653 3468999999999999988766221          1123344444 678999998 455666663  


Q ss_pred             --CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCe
Q 016547          107 --KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       107 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  183 (387)
                        .|-.+.|||+.+........+                                    .+. +......+++|..+. .
T Consensus       125 hrnds~~~Iwdi~s~ltvPke~~------------------------------------~fs~~~l~gqns~cwlrd~-k  167 (783)
T KOG1008|consen  125 HRNDSSLKIWDINSLLTVPKESP------------------------------------LFSSSTLDGQNSVCWLRDT-K  167 (783)
T ss_pred             hcccCCccceecccccCCCcccc------------------------------------ccccccccCccccccccCc-c
Confidence              356799999986532110000                                    000 122344578888665 7


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE-eccCCCCCCCCceEEeccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~~~~~~~~~~~~~~~~  262 (387)
                      ++++|.....++++|++....   ....-....+..+.++|..++++++-. ||.|-+|| .++.     ..++..+...
T Consensus       168 lvlaGm~sr~~~ifdlRqs~~---~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni-----enpl~~i~~~  238 (783)
T KOG1008|consen  168 LVLAGMTSRSVHIFDLRQSLD---SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI-----ENPLQIILRN  238 (783)
T ss_pred             hhhcccccchhhhhhhhhhhh---hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh-----ccHHHHHhhC
Confidence            888998889999999985441   111223345667888887788887765 99999999 4442     2333333211


Q ss_pred             ----cceEEEEEEcCCCCeeEEEecC-CCeEEEEeCCCCC
Q 016547          263 ----SAAVLCVQWSPDKSSVFGSSAE-DGLLNIWDYEKVG  297 (387)
Q Consensus       263 ----~~~i~~~~~~~~~~~ll~s~~~-d~~i~vwd~~~~~  297 (387)
                          ...+..++|+|...-++++... .++|+++|+....
T Consensus       239 ~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  239 ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             CCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence                2348999999987666777765 4789999987643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=3.5e-08  Score=81.28  Aligned_cols=231  Identities=11%  Similarity=0.065  Sum_probs=150.7

Q ss_pred             cCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           85 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        85 h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      |.+ .|+.+. ..-.+++++++.||.++.|.-...                                     ...+.+..
T Consensus         8 hrd-~i~hv~-~tka~fiiqASlDGh~KFWkKs~i-------------------------------------sGvEfVKh   48 (558)
T KOG0882|consen    8 HRD-VITHVF-PTKAKFIIQASLDGHKKFWKKSRI-------------------------------------SGVEFVKH   48 (558)
T ss_pred             ccc-eeeeEe-eehhheEEeeecchhhhhcCCCCc-------------------------------------cceeehhh
Confidence            444 444433 335679999999999999975421                                     11223355


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecC-CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC-CeEEE-eeCCCeEEE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILT-GSADNSVRM  241 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~-~~~dg~i~~  241 (387)
                      +..|...|.+++.+-++ .++.+.+. |..++++|+..-.......+..-++.+..+ .++.+. ..+++ ...+|.|.+
T Consensus        49 FraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~V  126 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFV  126 (558)
T ss_pred             hHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEE
Confidence            67788899999999998 88888777 999999999876633223332223322222 222111 13333 345789999


Q ss_pred             EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547          242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  321 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (387)
                      +|-+...    .+....-+-|..+|.++.+++.+.. +++....|.|.-|.....-+...............+..+....
T Consensus       127 vD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  127 VDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK  201 (558)
T ss_pred             ECCcCCc----CccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence            9988632    2444455668999999999999985 5688888999999987411111100000011112233344456


Q ss_pred             CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547          322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  375 (387)
Q Consensus       322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~  375 (387)
                      ...+++.|+|++..+.        +-+.|..|+++.+.      ++++++++..
T Consensus       202 t~pts~Efsp~g~qis--------tl~~DrkVR~F~~K------tGklvqeiDE  241 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQIS--------TLNPDRKVRGFVFK------TGKLVQEIDE  241 (558)
T ss_pred             cCccceEEccccCccc--------ccCcccEEEEEEec------cchhhhhhhc
Confidence            6789999999999877        66677999999999      7887777653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.86  E-value=2.2e-09  Score=92.05  Aligned_cols=208  Identities=17%  Similarity=0.266  Sum_probs=137.5

Q ss_pred             eEEEEECCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           90 EFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        90 v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      +.|+++.-+.  ..++.|..+|.|.+-.++.....                                      .-....+
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------------s~E~tp~  100 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------------SAEVTPG  100 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------------cceeccc
Confidence            5677776544  46788999999999888753221                                      1133456


Q ss_pred             CCCCeEEEEEccCCCeeEEEec----CCCeEEEEEccCCCCcee--EEee-ccCCCeeEEEecCCCCCeEEEeeCCCeEE
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTSPVI--KVEK-AHDADLHCVDWNPLDDNLILTGSADNSVR  240 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  240 (387)
                      +..+.++++|++-+.+.|+.|-    .|..+.|||+.+.-....  -.+. .......+++|.. +..++++|.....+.
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~  179 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVH  179 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhh
Confidence            7888999999987656777764    467899999987621011  1111 2334556889986 899999999999999


Q ss_pred             EEEeccCCCCCCCCceEEeccccceEEEEEEcC-CCCeeEEEecCCCeEEEEe-CCCCCceeccCCCCCCCCceeeeeec
Q 016547          241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWD-YEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      ++|+|..     ......+  ....+..+...| .+.| + +...||.|.+|| .++.+.+.......+          .
T Consensus       180 ifdlRqs-----~~~~~sv--nTk~vqG~tVdp~~~nY-~-cs~~dg~iAiwD~~rnienpl~~i~~~~----------N  240 (783)
T KOG1008|consen  180 IFDLRQS-----LDSVSSV--NTKYVQGITVDPFSPNY-F-CSNSDGDIAIWDTYRNIENPLQIILRNE----------N  240 (783)
T ss_pred             hhhhhhh-----hhhhhhh--hhhhcccceecCCCCCc-e-eccccCceeeccchhhhccHHHHHhhCC----------C
Confidence            9999941     1222222  234566788888 4444 5 444599999999 444333322111111          1


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      .....+..++|+|...-++++++.|.      ++|+++++...
T Consensus       241 ~~~~~l~~~aycPtrtglla~l~RdS------~tIrlydi~~v  277 (783)
T KOG1008|consen  241 KKPKQLFALAYCPTRTGLLAVLSRDS------ITIRLYDICVV  277 (783)
T ss_pred             CcccceeeEEeccCCcchhhhhccCc------ceEEEeccccc
Confidence            11225899999999888888877663      89999998754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=7.6e-09  Score=56.85  Aligned_cols=38  Identities=21%  Similarity=0.468  Sum_probs=35.2

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS  115 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd  115 (387)
                      +++..+.+|.+ .|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~-~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSS-SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSS-SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCC-cEEEEEEecccccceeeCCCCEEEEEC
Confidence            45778999998 799999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=3.6e-07  Score=74.38  Aligned_cols=161  Identities=9%  Similarity=0.114  Sum_probs=101.1

Q ss_pred             CCeEEEeccCCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  155 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (387)
                      +....+.+|.. .|..++|+|..+ .+..++.+.+|.|.|+++....                                 
T Consensus       184 kssq~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------------------  229 (463)
T KOG1645|consen  184 KSSQILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------------------  229 (463)
T ss_pred             chhhcccccch-hhhhhccCccccceeeeeccCceEEEEecccceee---------------------------------
Confidence            44455666665 799999999877 7888999999999999875433                                 


Q ss_pred             CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee-ccCCCeeEEEecCC-----CCCe
Q 016547          156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL-----DDNL  229 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~~  229 (387)
                             ..+..+ ..+++++|.-+..+++..|...|.|.+||++..+.+...... -...+|..++.-+.     .+.+
T Consensus       230 -------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl  301 (463)
T KOG1645|consen  230 -------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL  301 (463)
T ss_pred             -------eheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence                   233344 679999999988889999999999999999987643222111 12234444433220     2444


Q ss_pred             EEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC
Q 016547          230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  284 (387)
Q Consensus       230 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~  284 (387)
                      |+....+  +..|.......  ...++..+. ..+...+++..+..++++++.-.
T Consensus       302 Lv~~lt~--l~f~ei~~s~~--~~p~vlele-~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  302 LVFALTV--LQFYEIVFSAE--CLPCVLELE-PPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             EEeeehh--hhhhhhhcccc--CCCcccccC-CCcceeeeeecCccceEEEEecC
Confidence            4443333  34555443211  023333333 34556677777766667766543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.83  E-value=2.8e-06  Score=73.86  Aligned_cols=272  Identities=14%  Similarity=0.079  Sum_probs=140.3

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  123 (387)
                      +..+.+++.+|.|.-+|..+++            .+........ .......  ++..++.++.++.+..+|.+++....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~------------~~W~~~~~~~-~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W  129 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGK------------RLWRVDLDER-LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELW  129 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCc------------EeeeecCCCC-cccceEE--cCCEEEEEcCCCEEEEEECCCCcEee
Confidence            4567788888999999998883            3222222211 1112222  46678888889999999998876554


Q ss_pred             ccCCCcccC--CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe-----EEEEEccCCCeeEEEecCCCeEEE
Q 016547          124 ATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLIL  196 (387)
Q Consensus       124 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~i  196 (387)
                      .........  +......+...  ...+.+..++..+++.+-.+......+     ...... +  ..++.+..++.+..
T Consensus       130 ~~~~~~~~~~~p~v~~~~v~v~--~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~--~~v~~~~~~g~v~a  204 (377)
T TIGR03300       130 RAKLSSEVLSPPLVANGLVVVR--TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D--GGVLVGFAGGKLVA  204 (377)
T ss_pred             eeccCceeecCCEEECCEEEEE--CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C--CEEEEECCCCEEEE
Confidence            333221110  00001111111  112333333444443333222211111     011111 2  35677888899999


Q ss_pred             EEccCCCCceeEEeeccC--CCe---eEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEE
Q 016547          197 WDARVGTSPVIKVEKAHD--ADL---HCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ  270 (387)
Q Consensus       197 wd~~~~~~~~~~~~~~~~--~~i---~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~  270 (387)
                      +|.++++..-........  ..+   ..+.-+| ..+..+++++.+|.++.||..+      ++.+-.... . ......
T Consensus       205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~-~-~~~~p~  276 (377)
T TIGR03300       205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA-S-SYQGPA  276 (377)
T ss_pred             EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc-C-CccCce
Confidence            999888721111110000  000   0010011 0345777888899999999987      766655441 1 112222


Q ss_pred             EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547          271 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGG  349 (387)
Q Consensus       271 ~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~  349 (387)
                      .  .+..++ .++.+|.+..+|..++...-               .... ......+...  .+..++        +++.
T Consensus       277 ~--~~~~vy-v~~~~G~l~~~d~~tG~~~W---------------~~~~~~~~~~ssp~i--~g~~l~--------~~~~  328 (377)
T TIGR03300       277 V--DDNRLY-VTDADGVVVALDRRSGSELW---------------KNDELKYRQLTAPAV--VGGYLV--------VGDF  328 (377)
T ss_pred             E--eCCEEE-EECCCCeEEEEECCCCcEEE---------------ccccccCCccccCEE--ECCEEE--------EEeC
Confidence            2  344454 66789999999998753221               1100 0011112122  245666        5566


Q ss_pred             CceEEEEecCCCcccccchhhhhhhccC
Q 016547          350 GGTLQIWRMSDLIYRPQDEVLAELEKFK  377 (387)
Q Consensus       350 dg~i~iw~~~~~~~~~~~~~~~~~~~~~  377 (387)
                      ||.|+++|..      +++.+.++..+.
T Consensus       329 ~G~l~~~d~~------tG~~~~~~~~~~  350 (377)
T TIGR03300       329 EGYLHWLSRE------DGSFVARLKTDG  350 (377)
T ss_pred             CCEEEEEECC------CCCEEEEEEcCC
Confidence            6999999988      677776666444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=9.6e-09  Score=56.43  Aligned_cols=38  Identities=34%  Similarity=0.835  Sum_probs=34.8

Q ss_pred             CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                      +++.++++|...|++++|+|++.+ |++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~-~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNF-LASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSE-EEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccccc-ceeeCCCCEEEEEC
Confidence            577899999999999999999885 67999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.81  E-value=2.1e-07  Score=83.51  Aligned_cols=184  Identities=10%  Similarity=0.188  Sum_probs=128.2

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  124 (387)
                      ..++.|+-...+..+|+.+.            +.......... .|+-+..  +++++.+|...|+|.+-|.++      
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~------------~e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s------  206 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTE------------KETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNS------  206 (1118)
T ss_pred             cceeecchhhheeeeecccc------------eeeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCc------
Confidence            34555555556666777666            33333333332 3445544  678899999999999988864      


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC---------CCeEE
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---------DSCLI  195 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~  195 (387)
                                                        .+.+..+..|++.|.++...  | ++|++|+.         |..|+
T Consensus       207 ----------------------------------~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~Fvk  249 (1118)
T KOG1275|consen  207 ----------------------------------FETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVK  249 (1118)
T ss_pred             ----------------------------------Cceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhh
Confidence                                              45568889999999887775  4 67888875         56689


Q ss_pred             EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547          196 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  275 (387)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (387)
                      +||++..+  .+..+.-+.+ ..-+.|.|.-...+++++..|...+.|..+..+.  ...+.-+......+..+.+++++
T Consensus       250 VYDLRmmr--al~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~  324 (1118)
T KOG1275|consen  250 VYDLRMMR--ALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNG  324 (1118)
T ss_pred             hhhhhhhh--ccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCC
Confidence            99999877  3333333333 2567788866789999999999999995443211  12233334445669999999999


Q ss_pred             CeeEEEecCCCeEEEEe
Q 016547          276 SSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       276 ~~ll~s~~~d~~i~vwd  292 (387)
                      .. +|.|..+|.|.+|-
T Consensus       325 ~a-lafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  325 DA-LAFGDHEGHVNLWA  340 (1118)
T ss_pred             ce-EEEecccCcEeeec
Confidence            95 68999999999998

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.77  E-value=2.9e-07  Score=82.63  Aligned_cols=154  Identities=13%  Similarity=0.191  Sum_probs=113.6

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---------CCeEE
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVR  240 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~  240 (387)
                      ..|.-++.+  + +.+.+|...|+|.+-|.++.+  .+..+..|.+.|..+..   .|++|++++.         |.-|+
T Consensus       178 ~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~Fvk  249 (1118)
T KOG1275|consen  178 SGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVK  249 (1118)
T ss_pred             CceEEEEec--C-cEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhh
Confidence            345555553  3 779999999999999999888  78899999999988776   6788888874         55689


Q ss_pred             EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      +||+|+      .+.+.-+.-+-++ .-+.|.|.-...+|.++..|...+-|......+.           .-+......
T Consensus       250 VYDLRm------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-----------~~~~~v~p~  311 (1118)
T KOG1275|consen  250 VYDLRM------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-----------AGVKMVNPN  311 (1118)
T ss_pred             hhhhhh------hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc-----------cceeEEccC
Confidence            999998      4444444333333 4577888765567788889999999955443321           113333344


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      ...+.+++++++++.++        -|..+|.|.+|.
T Consensus       312 ~s~i~~fDiSsn~~ala--------fgd~~g~v~~wa  340 (1118)
T KOG1275|consen  312 GSGISAFDISSNGDALA--------FGDHEGHVNLWA  340 (1118)
T ss_pred             CCcceeEEecCCCceEE--------EecccCcEeeec
Confidence            45699999999999887        778889999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2.1e-06  Score=70.15  Aligned_cols=79  Identities=10%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG  105 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~  105 (387)
                      ..+|...|..++|+|.+..++..++.+..|+|.|+++.            ..+..+..|.  .+++++|..|.. ++..|
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------------~~vssy~a~~--~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------------CVVSSYIAYN--QIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccc------------eeeeheeccC--CceeeeeccCCcceeEEe
Confidence            34578899999999966668999999999999999998            6666777774  689999988754 67778


Q ss_pred             cCCCeEEEEEcCCC
Q 016547          106 GKDKSVVLWSIQDH  119 (387)
Q Consensus       106 ~~d~~i~vwd~~~~  119 (387)
                      ...|.|.+||++..
T Consensus       255 l~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQP  268 (463)
T ss_pred             ccCceEEEEEccCC
Confidence            88999999999864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=1.2e-08  Score=91.08  Aligned_cols=191  Identities=19%  Similarity=0.246  Sum_probs=134.1

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      ..|...-+|++|+- +.+.|+.|+-.|.|+++++.++            ........|.. +|+-+.-+.+|..+++.+.
T Consensus      1098 rd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG------------~~e~s~ncH~S-avT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSG------------SMEESVNCHQS-AVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             hccccceeeEEeec-CCceEEeeeccceEEEEEccCc------------ccccccccccc-ccccccccCCcceeeeecc
Confidence            35888899999998 8899999999999999999999            56667888887 7999999999998776654


Q ss_pred             CC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          108 DK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       108 d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      -.  -..+|++..                                       .+.+...+    ..-.++.|+... +.-
T Consensus      1164 ~S~PlsaLW~~~s---------------------------------------~~~~~Hsf----~ed~~vkFsn~~-q~r 1199 (1516)
T KOG1832|consen 1164 SSSPLSALWDASS---------------------------------------TGGPRHSF----DEDKAVKFSNSL-QFR 1199 (1516)
T ss_pred             ccCchHHHhcccc---------------------------------------ccCccccc----cccceeehhhhH-HHH
Confidence            33  467898863                                       11222222    234678888765 444


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      +.|+.-....+||+.+... +...+.   +....-++..|+| +..+++   .||.  +||.+.      .+.++.|...
T Consensus      1200 ~~gt~~d~a~~YDvqT~~~-l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~------~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSP-LQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRI------PEAIHRFDQF 1266 (1516)
T ss_pred             HhcccccceEEEecccCcH-HHHhcCcchhhhhhccccccCC-CcceEe---eCce--eeeecc------HHHHhhhhhh
Confidence            5555556799999998872 211111   1222236788999 666654   5664  699998      6777777655


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ...+ .-.|+|.|..++ .-     -.|||+++.
T Consensus      1267 t~~~-~G~FHP~g~eVI-IN-----SEIwD~RTF 1293 (1516)
T KOG1832|consen 1267 TDYG-GGGFHPSGNEVI-IN-----SEIWDMRTF 1293 (1516)
T ss_pred             eecc-cccccCCCceEE-ee-----chhhhhHHH
Confidence            4322 446999998765 33     248999985

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.69  E-value=7.8e-06  Score=71.07  Aligned_cols=98  Identities=20%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ..++.++.+|.+..+|.++++  ..-... .. .......   .+..+++++.+|.+..+|..+      ++.+-+....
T Consensus       242 ~~vy~~~~~g~l~a~d~~tG~--~~W~~~-~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~  308 (377)
T TIGR03300       242 GQVYAVSYQGRVAALDLRSGR--VLWKRD-AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDEL  308 (377)
T ss_pred             CEEEEEEcCCEEEEEECCCCc--EEEeec-cC-CccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccc
Confidence            357777789999999999887  222222 11 1122222   456778888999999999987      6666544221


Q ss_pred             cc-eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          263 SA-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       263 ~~-~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .. .......  .+..+ .+++.+|.|.++|..++
T Consensus       309 ~~~~~ssp~i--~g~~l-~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       309 KYRQLTAPAV--VGGYL-VVGDFEGYLHWLSREDG  340 (377)
T ss_pred             cCCccccCEE--ECCEE-EEEeCCCEEEEEECCCC
Confidence            11 1222222  24444 57888999999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.66  E-value=2.2e-05  Score=67.93  Aligned_cols=150  Identities=15%  Similarity=0.281  Sum_probs=95.9

Q ss_pred             eEEEEEccCCCeeEEEe----cCCCe----EEEEEccCCCCcee-EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          172 VEDVTFCPSSAQEFCSV----GDDSC----LILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~----~~dg~----i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      ..++.|+-..++.+.+.    +.+|.    -.+|++...+.... .......+.+.+.+++| +...|+.|+.||.|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence            35677776554555553    23443    34666665542222 22235778999999999 99999999999999999


Q ss_pred             EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee---ecc
Q 016547          243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ---HAG  319 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~  319 (387)
                      |...      +  +..+....-.++.++|+|+|. ++++|+..|.+.+||+.-..-....... . ..+.....   +-.
T Consensus       287 D~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsE-d-~~P~~~L~Ls~yf~  355 (545)
T PF11768_consen  287 DTTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSE-D-ATPKSTLQLSKYFR  355 (545)
T ss_pred             EcCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccc-c-CCCccEEeeehhcc
Confidence            9876      3  222223456688999999999 5679999999999998764332211111 1 11111222   223


Q ss_pred             CCCCeeEEEEccCC
Q 016547          320 HRDKVVDFHWNASD  333 (387)
Q Consensus       320 ~~~~v~~~~~~~~~  333 (387)
                      +...+..+.|.+..
T Consensus       356 ~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  356 VSSSLVHIQWAPAP  369 (545)
T ss_pred             CcchhheeEeccCC
Confidence            45577888888543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=9.8e-06  Score=72.78  Aligned_cols=199  Identities=13%  Similarity=0.141  Sum_probs=127.3

Q ss_pred             EEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547           93 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  172 (387)
Q Consensus        93 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  172 (387)
                      -+|++.+..++.|+.+|.|.+.+-.                                         .+.+..+..+...+
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s-----------------------------------------~~~~~~fqa~~~si   67 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS-----------------------------------------FQLIRGFQAYEQSI   67 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc-----------------------------------------ceeeehheecchhh
Confidence            4567888899999999998887643                                         11223344555552


Q ss_pred             EEEEEccCCCeeEEEecCCC-----eEEEEEccCCCC---c-ee---EEe----eccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          173 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTS---P-VI---KVE----KAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~---~-~~---~~~----~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      -..-|.-++..+|++.+.|+     .+++||++..+.   | ++   +.+    +....++.+++++. +-..+|+|-.+
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~n  146 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTN  146 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecC
Confidence            22333333335677766554     599999976421   1 22   111    12356788999998 89999999999


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      |.|.++.-.-....  +....-...-..+|+.+++..++.. +||+.  -..|.+|.+.... +             ...
T Consensus       147 G~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~-p-------------~~~  208 (933)
T KOG2114|consen  147 GLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRT-P-------------SLK  208 (933)
T ss_pred             cEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCC-c-------------cee
Confidence            99998854321110  2222222223578999999999886 34333  4579999998532 1             234


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .+..|...+.+..+++....++++.+         ..|.+|+.+.
T Consensus       209 ~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~  244 (933)
T KOG2114|consen  209 VLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDG  244 (933)
T ss_pred             eeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCC
Confidence            46677788999999986664554333         5899999883

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.64  E-value=2.5e-05  Score=62.17  Aligned_cols=212  Identities=16%  Similarity=0.249  Sum_probs=116.0

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE--EeccCCCceEEEEECCCCCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .+-+-...+..|+|.|+++.++++....+.|...+.+ +            +.+..  +.+..+  .-.|++..++.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G------------~vlr~i~l~g~~D--~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G------------KVLRRIPLDGFGD--YEGITYLGNGRYVL   80 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------------EEEEEE-SS-SS--EEEEEE-STTEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C------------CEEEEEeCCCCCC--ceeEEEECCCEEEE
Confidence            3345566799999999778888888889999888875 3            22333  444443  57999998898888


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +--.++.+.+.++............                            ... .+.....+...+-.++|.+.+..
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~----------------------------~~~-~l~~~~~~N~G~EGla~D~~~~~  131 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADV----------------------------QKI-SLGFPNKGNKGFEGLAYDPKTNR  131 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEE----------------------------EEE-E---S---SS--EEEEEETTTTE
T ss_pred             EEcCCCcEEEEEEeccccccchhhc----------------------------eEE-ecccccCCCcceEEEEEcCCCCE
Confidence            8878999999998543211100000                            000 00011234566899999998745


Q ss_pred             eEEEecCCCeEEEEEccC--C-CCceeEE------eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          184 EFCSVGDDSCLILWDARV--G-TSPVIKV------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~--~-~~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                       |+.+-...-..+|.+..  . .......      .......+.+++++|..+.+++.+.....|..+|..       ++
T Consensus       132 -L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-------G~  203 (248)
T PF06977_consen  132 -LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-------GR  203 (248)
T ss_dssp             -EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---------
T ss_pred             -EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-------CC
Confidence             44555555566776654  1 1101111      112334578999999778888888889999999944       66


Q ss_pred             ceEEecccc---------ceEEEEEEcCCCCeeEEEecCCCeEEEE
Q 016547          255 PINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIW  291 (387)
Q Consensus       255 ~~~~~~~~~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vw  291 (387)
                      ++..+.-..         ...-.|+|.++|. |+++ ++-+..++|
T Consensus       204 ~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  204 VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEE-ETTTEEEEE
T ss_pred             EEEEEEeCCcccCcccccCCccEEEECCCCC-EEEE-cCCceEEEe
Confidence            655543211         2467899999997 5534 455555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=1.8e-05  Score=63.98  Aligned_cols=212  Identities=14%  Similarity=0.106  Sum_probs=117.3

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      +|+|..||..++            +.+....--. .....+. ..+++.++++++.++.+..||..+++.......    
T Consensus         2 ~g~l~~~d~~tG------------~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~----   64 (238)
T PF13360_consen    2 DGTLSALDPRTG------------KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL----   64 (238)
T ss_dssp             TSEEEEEETTTT------------EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC----
T ss_pred             CCEEEEEECCCC------------CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec----
Confidence            678888888877            3333332211 1111111 233566777778899999999987654322211    


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-e
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-E  210 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~  210 (387)
                                                           ...+.......+  ..++.++.++.+..+|..+++  .... .
T Consensus        65 -------------------------------------~~~~~~~~~~~~--~~v~v~~~~~~l~~~d~~tG~--~~W~~~  103 (238)
T PF13360_consen   65 -------------------------------------PGPISGAPVVDG--GRVYVGTSDGSLYALDAKTGK--VLWSIY  103 (238)
T ss_dssp             -------------------------------------SSCGGSGEEEET--TEEEEEETTSEEEEEETTTSC--EEEEEE
T ss_pred             -------------------------------------cccccceeeecc--cccccccceeeeEecccCCcc--eeeeec
Confidence                                                 111111112223  345566678899999999988  3333 2


Q ss_pred             eccC--C-CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce----------E-EEEEEcCCCC
Q 016547          211 KAHD--A-DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA----------V-LCVQWSPDKS  276 (387)
Q Consensus       211 ~~~~--~-~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~----------i-~~~~~~~~~~  276 (387)
                      ....  . ......... .+..++++..++.|..+|.++      ++.+.........          + ..+.+. ++ 
T Consensus       104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  174 (238)
T PF13360_consen  104 LTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-  174 (238)
T ss_dssp             E-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred             cccccccccccccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence            2111  1 112223333 477888888899999999998      8887776543311          1 223333 44 


Q ss_pred             eeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547          277 SVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  355 (387)
Q Consensus       277 ~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i  355 (387)
                      .++ .++.++. +.+ |+.++..               +....  ...+..+ ...++..+++..        .++.|..
T Consensus       175 ~v~-~~~~~g~~~~~-d~~tg~~---------------~w~~~--~~~~~~~-~~~~~~~l~~~~--------~~~~l~~  226 (238)
T PF13360_consen  175 RVY-VSSGDGRVVAV-DLATGEK---------------LWSKP--ISGIYSL-PSVDGGTLYVTS--------SDGRLYA  226 (238)
T ss_dssp             EEE-EECCTSSEEEE-ETTTTEE---------------EEEEC--SS-ECEC-EECCCTEEEEEE--------TTTEEEE
T ss_pred             EEE-EEcCCCeEEEE-ECCCCCE---------------EEEec--CCCccCC-ceeeCCEEEEEe--------CCCEEEE
Confidence            455 4555664 555 8888531               11111  1222221 345677777433        4599999


Q ss_pred             EecC
Q 016547          356 WRMS  359 (387)
Q Consensus       356 w~~~  359 (387)
                      ||+.
T Consensus       227 ~d~~  230 (238)
T PF13360_consen  227 LDLK  230 (238)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9999

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=6.4e-06  Score=73.35  Aligned_cols=189  Identities=13%  Similarity=0.237  Sum_probs=123.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .++|+++  .+++|+-|..+|.|++.+.+...                                          .....|
T Consensus        41 ~is~~av--~~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~~~   76 (846)
T KOG2066|consen   41 AISCCAV--HDKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNFDH   76 (846)
T ss_pred             HHHHHHh--hcceeeeccccceEEEEecCCcc------------------------------------------cccccc
Confidence            3556666  46899999999999999986321                                          111223


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC----CCCeEEEeeCCCeEEEEEe
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~~~d~  244 (387)
                      +..      .-+| .++++|+.||.|.|-.+-+.+..  .. .....++.+++++|.    ..+.+++|+..| +.++.-
T Consensus        77 s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~--~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er  145 (846)
T KOG2066|consen   77 SSS------ILEG-EYVASCSDDGKVVIGSLFTDDEI--TQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER  145 (846)
T ss_pred             ccc------ccCC-ceEEEecCCCcEEEeeccCCccc--ee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence            322      3455 78999999999999998887732  22 234578999999993    267899999999 878776


Q ss_pred             ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  324 (387)
                      +-..+   ...+ .+....++|.++.|..+   ++|=++++| |+|||+...... ...+....        ....+...
T Consensus       146 ~wlgn---k~~v-~l~~~eG~I~~i~W~g~---lIAWand~G-v~vyd~~~~~~l-~~i~~p~~--------~~R~e~fp  208 (846)
T KOG2066|consen  146 NWLGN---KDSV-VLSEGEGPIHSIKWRGN---LIAWANDDG-VKVYDTPTRQRL-TNIPPPSQ--------SVRPELFP  208 (846)
T ss_pred             hhhcC---ccce-eeecCccceEEEEecCc---EEEEecCCC-cEEEecccccee-eccCCCCC--------CCCcccCC
Confidence            54321   1222 45566789999999755   566666554 999999884332 22111110        00111233


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..+.|.++...++          |...+|+|..++
T Consensus       209 phl~W~~~~~LVI----------GW~d~v~i~~I~  233 (846)
T KOG2066|consen  209 PHLHWQDEDRLVI----------GWGDSVKICSIK  233 (846)
T ss_pred             CceEecCCCeEEE----------ecCCeEEEEEEe
Confidence            5678888655433          333589999888

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.60  E-value=4.8e-05  Score=61.54  Aligned_cols=213  Identities=14%  Similarity=0.180  Sum_probs=127.8

Q ss_pred             EEEEECC-CCCEEEEecCCC-eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           91 FALAMCP-TEPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        91 ~~~~~~~-~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ..++.+| .+..++.+-.-| ...+||..++........                                ..-..|.+|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a--------------------------------~~gRHFyGH   55 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA--------------------------------PPGRHFYGH   55 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC--------------------------------CCCCEEecC
Confidence            3567777 444555555555 466788876644322111                                111445555


Q ss_pred             CCCeEEEEEccCCCeeEEEe-----cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---------
Q 016547          169 EDTVEDVTFCPSSAQEFCSV-----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---------  234 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------  234 (387)
                            -.|+++| ++|++.     ...|.|-+||....- ..+..+..|.-....+.+.| ++..|+++.         
T Consensus        56 ------g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~  126 (305)
T PF07433_consen   56 ------GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDS  126 (305)
T ss_pred             ------EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCccc
Confidence                  4799999 556554     345889999998332 35667777777788899999 887777763         


Q ss_pred             ---------CCCeEEEEEeccCCCCCCCCceEE--e--ccccceEEEEEEcCCCCeeEEEecCCCe-------EEEEeCC
Q 016547          235 ---------ADNSVRMFDRRNLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAEDGL-------LNIWDYE  294 (387)
Q Consensus       235 ---------~dg~i~~~d~~~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~-------i~vwd~~  294 (387)
                               .+-++.+.|..+      ++.+.+  +  .-|...|..+++.++|.- +...-..|.       +-+++..
T Consensus       127 GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V-~~a~Q~qg~~~~~~PLva~~~~g  199 (305)
T PF07433_consen  127 GRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGTV-AFAMQYQGDPGDAPPLVALHRRG  199 (305)
T ss_pred             CceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCcE-EEEEecCCCCCccCCeEEEEcCC
Confidence                     122344445555      666655  3  236778999999999873 323322221       2233222


Q ss_pred             CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      ..-....       .+   -.....-.+.+-++++++++..++++       +-..|.+.+||..      +++.+....
T Consensus       200 ~~~~~~~-------~p---~~~~~~l~~Y~gSIa~~~~g~~ia~t-------sPrGg~~~~~d~~------tg~~~~~~~  256 (305)
T PF07433_consen  200 GALRLLP-------AP---EEQWRRLNGYIGSIAADRDGRLIAVT-------SPRGGRVAVWDAA------TGRLLGSVP  256 (305)
T ss_pred             Ccceecc-------CC---hHHHHhhCCceEEEEEeCCCCEEEEE-------CCCCCEEEEEECC------CCCEeeccc
Confidence            2100000       00   00112334688999999999988874       4455999999998      677665543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=1.8e-07  Score=83.79  Aligned_cols=175  Identities=12%  Similarity=0.201  Sum_probs=124.5

Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-  237 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-  237 (387)
                      ++....+..|+...+|++|+... ++++.|+..|.|+++++.++.  .......|.+.|+-+.-+. ++..+++.+.-. 
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence            34456677888999999999887 899999999999999999988  4566778999999999888 888777766544 


Q ss_pred             -eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547          238 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  316 (387)
Q Consensus       238 -~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  316 (387)
                       -..+|++...     +.+.+++...    .++.|+.....- +.|.......+||+.+.......           +..
T Consensus      1167 PlsaLW~~~s~-----~~~~Hsf~ed----~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~ty-----------lt~ 1225 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDED----KAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTY-----------LTD 1225 (1516)
T ss_pred             chHHHhccccc-----cCcccccccc----ceeehhhhHHHH-HhcccccceEEEecccCcHHHHh-----------cCc
Confidence             4678999863     6777777642    468888765432 34555567899999986544321           111


Q ss_pred             eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC
Q 016547          317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  377 (387)
Q Consensus       317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  377 (387)
                      ..+..-.-+...|+|+...++             +.=.+||++      ..+-++.+....
T Consensus      1226 ~~~~~y~~n~a~FsP~D~LIl-------------ndGvLWDvR------~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLIL-------------NDGVLWDVR------IPEAIHRFDQFT 1267 (1516)
T ss_pred             chhhhhhccccccCCCcceEe-------------eCceeeeec------cHHHHhhhhhhe
Confidence            111222336778999888777             444689998      456666665443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.44  E-value=2.4e-06  Score=73.59  Aligned_cols=79  Identities=11%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ....+..+..|.|++++| +.+.|+.|+.||+|.+||...+            .  ..+....- ..+.++|+|+|..++
T Consensus       252 svtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~------------~--t~~~ka~~-~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  252 SVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRG------------V--TLLAKAEF-IPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCC------------e--eeeeeecc-cceEEEEcCCCcEEE
Confidence            455667999999999999 8889999999999999998766            1  11222222 457999999999999


Q ss_pred             EecCCCeEEEEEcCC
Q 016547          104 SGGKDKSVVLWSIQD  118 (387)
Q Consensus       104 s~~~d~~i~vwd~~~  118 (387)
                      +|+..|.+.+||+.-
T Consensus       316 V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  316 VGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCceEEEEEeec
Confidence            999999999999874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=0.00022  Score=67.06  Aligned_cols=204  Identities=11%  Similarity=0.210  Sum_probs=126.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .|.++.|..+..-++.+..+|.|.+-|.++...                                         .....-
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------------------eivg~v  108 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------------------EIVGNV  108 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------------------eeeeec
Confidence            688999999998888888899999988765322                                         222233


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEcc----CCCC-----------------ceeEEeec---------------
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGTS-----------------PVIKVEKA---------------  212 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~-----------------~~~~~~~~---------------  212 (387)
                      ...|.+++|+||. ..++..+..+++.+-.-.    ..+.                 .....+.+               
T Consensus       109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            5789999999998 777777777776654320    0000                 00001110               


Q ss_pred             ------cCCCeeEEEecCCCCCeEEEee-----CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547          213 ------HDADLHCVDWNPLDDNLILTGS-----ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       213 ------~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                            ..+.=++|.|-- +|.++|+..     ..+.|++||...       ..-..-..-.+.-.+++|-|.|.. +|+
T Consensus       188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs~-iA~  258 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGSL-IAA  258 (1265)
T ss_pred             cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCCe-Eee
Confidence                  011124588988 999999843     337999999872       111111112233458999999984 454


Q ss_pred             ec---CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          282 SA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       282 ~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      -.   .|+.|.+|.-+.....            .....+......|..++|+.++..|++-.     +......|++|-+
T Consensus       259 iq~~~sd~~IvffErNGL~hg------------~f~l~~p~de~~ve~L~Wns~sdiLAv~~-----~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERNGLRHG------------EFVLPFPLDEKEVEELAWNSNSDILAVVT-----SNLENSLVQLWTT  321 (1265)
T ss_pred             eeecCCCCcEEEEecCCcccc------------ccccCCcccccchheeeecCCCCceeeee-----cccccceEEEEEe
Confidence            42   4567888886543211            11222233344599999999998777533     2334455999998


Q ss_pred             CC
Q 016547          359 SD  360 (387)
Q Consensus       359 ~~  360 (387)
                      .+
T Consensus       322 ~N  323 (1265)
T KOG1920|consen  322 GN  323 (1265)
T ss_pred             cC
Confidence            74

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.40  E-value=7.7e-05  Score=64.10  Aligned_cols=148  Identities=14%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc-ccCCCccc-------CCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAK-------SAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      .|+.+.|.++..-|+.+...|.|.+|.....+... ...+....       .......+.........     .-.....
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~-----~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPP-----SLKEGFL   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--T-----T-SEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCc-----ccccccC
Confidence            47899999999999999999999999987653332 00000000       00001111110000000     0001134


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE--eec------cCCCeeEEEecC----CC--
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--EKA------HDADLHCVDWNP----LD--  226 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~------~~~~i~~~~~~~----~~--  226 (387)
                      +...+....++|++++.+.-|  +++.|..+|.+.|.|+|...  .+..  +..      ....++++.|..    .+  
T Consensus        78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            555666678999999999777  89999999999999998765  2222  112      234577787752    12  


Q ss_pred             -CCeEEEeeCCCeEEEEEec
Q 016547          227 -DNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       227 -~~~l~~~~~dg~i~~~d~~  245 (387)
                       .-.+++|+..|.+.+|.+.
T Consensus       154 SSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEE
T ss_pred             cceEEEEEeCCCCEEEEEEe
Confidence             2588899999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.35  E-value=0.0003  Score=60.53  Aligned_cols=255  Identities=10%  Similarity=0.069  Sum_probs=127.2

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcc------ccc-------------------C------CCCCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH------AVL-------------------G------ATNSRPDLI   81 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~------~~~-------------------~------~~~~~~~~~   81 (387)
                      .|+.+.|.+ +..-|+.|...|.|.||.+...+...      ...                   .      .....+...
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            488999999 55568888899999999876553221      000                   0      001123444


Q ss_pred             EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      +....+ +|++++.| |=.+++.|..+|.+.|.|++.+..........                                
T Consensus        82 ~~~~~g-~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--------------------------------  127 (395)
T PF08596_consen   82 LDAKQG-PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------------------  127 (395)
T ss_dssp             E---S--SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------------
T ss_pred             eeccCC-cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------------------
Confidence            555544 79999997 55699999999999999998664333211100                                


Q ss_pred             ceeecCCCCCeEEEEEcc----CC---CeeEEEecCCCeEEEEEccC-CCCce----eEEeeccCCCeeEEE-ecCCC--
Q 016547          162 RGIYNGHEDTVEDVTFCP----SS---AQEFCSVGDDSCLILWDARV-GTSPV----IKVEKAHDADLHCVD-WNPLD--  226 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~----~~---~~~l~~~~~dg~i~iwd~~~-~~~~~----~~~~~~~~~~i~~~~-~~~~~--  226 (387)
                      ...-......++++.|..    ++   .-.+++|...|.+.+|.+.- .....    ......+.++|..|. ++...  
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~  207 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE  207 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence            001122345677888762    11   14688889999999998752 11111    111224556666555 22110  


Q ss_pred             -----------------CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc----CCCCeeEEEecCC
Q 016547          227 -----------------DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS----PDKSSVFGSSAED  285 (387)
Q Consensus       227 -----------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~ll~s~~~d  285 (387)
                                       -.-+++...+..++++..-+      .+..++..........+.+-    ..+...|++-..+
T Consensus       208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~  281 (395)
T PF08596_consen  208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN  281 (395)
T ss_dssp             B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred             cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC------CcccceeeccccccceEEEEeecccCCceEEEEEECC
Confidence                             11234445577799998876      55544443222233344442    1233467788899


Q ss_pred             CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      |.|++|.+...++.....           .........+....++++|+.++.+
T Consensus       282 G~i~i~SLP~Lkei~~~~-----------l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  282 GSIRIYSLPSLKEIKSVS-----------LPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             SEEEEEETTT--EEEEEE------------SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             CcEEEEECCCchHhhccc-----------CCCccccccccccEECCCCCEEEEe
Confidence            999999999864432110           0001122245566778888866543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.31  E-value=4.8e-05  Score=70.06  Aligned_cols=135  Identities=17%  Similarity=0.254  Sum_probs=91.9

Q ss_pred             CCCCCCCCCCCCCCceeecCCCCC-eEEEEEccCC------CeeEEEecCCCeEEEEEccCCCCceeEE---eeccCCCe
Q 016547          148 DGNDKAADGPSVGPRGIYNGHEDT-VEDVTFCPSS------AQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADL  217 (387)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~i  217 (387)
                      ...+...+...++.+..+..|... |..+  .|+.      +...+.|-.+..+..||.|.....++..   ........
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            344555566777777777776643 4444  3431      1335667778899999999754222211   11234456


Q ss_pred             eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547          218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~  294 (387)
                      .|++-+.  ..+||+|+.+|.||+||--.      .+....+.+...+|.+|..+.||+++||||  +..+.+++..
T Consensus       581 s~~aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             eEEEecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            7777664  66899999999999999432      334445667789999999999999998777  6778888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.30  E-value=2e-05  Score=69.34  Aligned_cols=165  Identities=10%  Similarity=0.150  Sum_probs=105.2

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      |...|.--++.. .+++++.|++-|.+++|+-..++....           ...+-+ +.+..+..+++..++|.|+..|
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~-----------~~~~~~-~~~~~~~vs~~e~lvAagt~~g   98 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKL-----------KNEGAT-GITCVRSVSSVEYLVAAGTASG   98 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcc-----------cccCcc-ceEEEEEecchhHhhhhhcCCc
Confidence            344443333344 778999999999999999887743221           122222 3566788899999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.++-++.........                                  ....-..|...|++++|++++ ..+.+|.
T Consensus        99 ~V~v~ql~~~~p~~~~~----------------------------------~t~~d~~~~~rVTal~Ws~~~-~k~ysGD  143 (726)
T KOG3621|consen   99 RVSVFQLNKELPRDLDY----------------------------------VTPCDKSHKCRVTALEWSKNG-MKLYSGD  143 (726)
T ss_pred             eEEeehhhccCCCccee----------------------------------eccccccCCceEEEEEecccc-cEEeecC
Confidence            99999887531110000                                  001112378899999999999 8899999


Q ss_pred             CCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          190 DDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ..|.|.+-.+.....  -....+..-.+.|..+.+..   .+|++++.-..+ +++++.
T Consensus       144 ~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~r~~-Lc~tE~  198 (726)
T KOG3621|consen  144 SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLTRCI-LCQTEA  198 (726)
T ss_pred             CCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhhhhh-eeecch
Confidence            999999988876210  01222334456777777653   344444444433 445443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=9.3e-05  Score=66.83  Aligned_cols=109  Identities=13%  Similarity=0.174  Sum_probs=80.1

Q ss_pred             EEEEecCCCCcEEEEecC----CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           35 NRIRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      +-+.|+| ...++|+++-    .|.|.||- ++++.          ....+...|    +++++|+|..-.|+.|-.-|.
T Consensus        19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEP----------qr~Vt~P~h----atSLCWHpe~~vLa~gwe~g~   82 (1416)
T KOG3617|consen   19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEP----------QRDVTYPVH----ATSLCWHPEEFVLAQGWEMGV   82 (1416)
T ss_pred             cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCC----------Cccccccee----hhhhccChHHHHHhhccccce
Confidence            4456777 6677777753    57888884 34421          122223333    357999999888999988999


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      +.+|...+...                                        -.....|..+|..+.|+++| ..++++..
T Consensus        83 ~~v~~~~~~e~----------------------------------------htv~~th~a~i~~l~wS~~G-~~l~t~d~  121 (1416)
T KOG3617|consen   83 SDVQKTNTTET----------------------------------------HTVVETHPAPIQGLDWSHDG-TVLMTLDN  121 (1416)
T ss_pred             eEEEecCCcee----------------------------------------eeeccCCCCCceeEEecCCC-CeEEEcCC
Confidence            99998875322                                        13345689999999999999 88999999


Q ss_pred             CCeEEEEEcc
Q 016547          191 DSCLILWDAR  200 (387)
Q Consensus       191 dg~i~iwd~~  200 (387)
                      -|.+.+|...
T Consensus       122 ~g~v~lwr~d  131 (1416)
T KOG3617|consen  122 PGSVHLWRYD  131 (1416)
T ss_pred             CceeEEEEee
Confidence            9999999876

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00032  Score=60.11  Aligned_cols=125  Identities=17%  Similarity=0.241  Sum_probs=83.0

Q ss_pred             CCceeecCCCCCeEEEEEccCCC------eeEEEecCCCeEEEEEccCCCCceeEEeecc----CCCeeEEEecCCCCCe
Q 016547          160 GPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNL  229 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~  229 (387)
                      +.+..+..+.. |+-+.+.|+..      ..-+.|-.+..|.-||++-.....+...+.|    .....|.+-.  ...+
T Consensus       367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~  443 (644)
T KOG2395|consen  367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGY  443 (644)
T ss_pred             eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCce
Confidence            33344444444 55666666531      1234566788999999986543222222222    2334455543  4678


Q ss_pred             EEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       230 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +++||.+|.||+||.-.      ......+.+...+|..+..+.+|+++|+++  +..+.+-++.-
T Consensus       444 IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~  501 (644)
T KOG2395|consen  444 IVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI  501 (644)
T ss_pred             EEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence            99999999999999843      445556778889999999999999988666  67788887764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.24  E-value=0.00031  Score=60.36  Aligned_cols=144  Identities=20%  Similarity=0.240  Sum_probs=72.3

Q ss_pred             CCCeeEEEecCCCCCeEEEee--CCC---eEEEEEeccCCCCCCCCceEEecc-ccceE---EEEEEc-CCCCeeEEEec
Q 016547          214 DADLHCVDWNPLDDNLILTGS--ADN---SVRMFDRRNLTSNGVGSPINKFEG-HSAAV---LCVQWS-PDKSSVFGSSA  283 (387)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~--~dg---~i~~~d~~~~~~~~~~~~~~~~~~-~~~~i---~~~~~~-~~~~~ll~s~~  283 (387)
                      ..-+..+.|.+ ++..|+..-  .+.   .+.++|..+      +.....++. ....|   ....|. +++..++....
T Consensus       183 ~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~t------g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  183 DYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDAST------GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             SEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECT------TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             ccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCC------CceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence            44577889988 777344333  222   356667665      333222221 12222   244444 66665555555


Q ss_pred             CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547          284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                      .+|.-+||-+...+..              ...+....-.|+. +.|+++++.+..++..+     .-+.-.+|.++-. 
T Consensus       256 ~~G~~hly~~~~~~~~--------------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~-----~p~~r~lY~v~~~-  315 (353)
T PF00930_consen  256 RDGYRHLYLYDLDGGK--------------PRQLTSGDWEVTSILGWDEDNNRIYFTANGD-----NPGERHLYRVSLD-  315 (353)
T ss_dssp             TTSSEEEEEEETTSSE--------------EEESS-SSS-EEEEEEEECTSSEEEEEESSG-----GTTSBEEEEEETT-
T ss_pred             cCCCcEEEEEcccccc--------------eeccccCceeecccceEcCCCCEEEEEecCC-----CCCceEEEEEEeC-
Confidence            8887777666653322              2233444445644 67899988888776543     2234455555421 


Q ss_pred             ccccchhhhhhhccCceEEEeeecC
Q 016547          363 YRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       363 ~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                         .+..+..+......-..+.|||
T Consensus       316 ---~~~~~~~LT~~~~~~~~~~~Sp  337 (353)
T PF00930_consen  316 ---SGGEPKCLTCEDGDHYSASFSP  337 (353)
T ss_dssp             ---ETTEEEESSTTSSTTEEEEE-T
T ss_pred             ---CCCCeEeccCCCCCceEEEECC
Confidence               1223333332222226777776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.23  E-value=0.00046  Score=60.40  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      .++.++.+|.+..+|..+++.  .-... . .....+..   .+..++.++.+|.+..+|..+      ++.+-......
T Consensus       258 ~vy~~~~~g~l~ald~~tG~~--~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~~  324 (394)
T PRK11138        258 VVYALAYNGNLVALDLRSGQI--VWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDLL  324 (394)
T ss_pred             EEEEEEcCCeEEEEECCCCCE--EEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEcccccC
Confidence            466677889999999998872  21111 1 11122222   456777788999999999987      65544332111


Q ss_pred             -ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          264 -AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       264 -~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                       ....+.... ++ ++ ..++.+|.+.+.|..++
T Consensus       325 ~~~~~sp~v~-~g-~l-~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        325 HRLLTAPVLY-NG-YL-VVGDSEGYLHWINREDG  355 (394)
T ss_pred             CCcccCCEEE-CC-EE-EEEeCCCEEEEEECCCC
Confidence             111222221 33 34 47788999999998875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.18  E-value=0.00045  Score=60.09  Aligned_cols=186  Identities=15%  Similarity=0.135  Sum_probs=105.8

Q ss_pred             ceEEEEECCCCCEEEEec---CC-CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           89 AEFALAMCPTEPYVLSGG---KD-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      .+..-.|+|+++.++..+   .. ..+.+++++++.....                                      ..
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------------------------------------~~  235 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------------------------------------LN  235 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------------------------ec
Confidence            466778899888765432   22 3588888876533211                                      11


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeE--EEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCL--ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRM  241 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~  241 (387)
                      +.++   -..-+|+|||.+++++...||..  .+.|+..+..   ..+....+.-..-.|+| +|+.++-.+. .|.-.|
T Consensus       236 ~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~---~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         236 FNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL---PRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             cCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc---eecccCCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence            2222   33468999998888888888874  5556666552   22333333333667999 8877776654 565555


Q ss_pred             EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      |-....     +.....+......-..-.|+|+|++++.....+|.  |.+.|+.....                .....
T Consensus       309 ~~~~~~-----g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~----------------~~~lt  367 (425)
T COG0823         309 YLYDLE-----GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK----------------IRILT  367 (425)
T ss_pred             EEECCC-----CCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc----------------EEEcc
Confidence            544332     23333333233333377899999987656544555  55555554321                01112


Q ss_pred             CCCCeeEEEEccCCCeEEEEe
Q 016547          320 HRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      +......-.|.+++..++.+.
T Consensus       368 ~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         368 STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             ccccCCCCCcCCCCceEEEec
Confidence            223334556778887776543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.00029  Score=62.77  Aligned_cols=86  Identities=8%  Similarity=0.037  Sum_probs=55.9

Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ......+.++|||+++++++..+..+.|.|+.+.........   .....+.....- .......+|.++|. ...    
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~---~~~~~vvaevev-GlGPLHTaFDg~G~-ayt----  390 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI---KPRDAVVAEPEL-GLGPLHTAFDGRGN-AYT----  390 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC---CccceEEEeecc-CCCcceEEECCCCC-EEE----
Confidence            455678999999999999999999999999998543211110   000112222222 23445678888876 444    


Q ss_pred             CCCCCCCCceEEEEecCC
Q 016547          343 DCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~  360 (387)
                         |--.|..|-.|++..
T Consensus       391 ---slf~dsqv~kwn~~~  405 (635)
T PRK02888        391 ---TLFLDSQIVKWNIEA  405 (635)
T ss_pred             ---eEeecceeEEEehHH
Confidence               444558999999984

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=0.00047  Score=60.23  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=79.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ....+.++|+|++++.++ ||...++......                                             ...
T Consensus        34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r---------------------------------------------~k~   67 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR---------------------------------------------NKA   67 (443)
T ss_dssp             --SEEEE-TTSSEEEEEE-TTEEEEEETTTTE---------------------------------------------EEE
T ss_pred             CCeeEEECCCCCEEEEEc-CCEEEEEEccCCc---------------------------------------------ccc
Confidence            356999999999999966 7888888743211                                             011


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEE-EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      .+....+.|.+.+  .+++-.....|.++ ++....   ...+.. ...+..|-    .|.+|+..+.+ .|.+||..+ 
T Consensus        68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---~k~i~~-~~~~~~If----~G~LL~~~~~~-~i~~yDw~~-  135 (443)
T PF04053_consen   68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---VKSIKL-PFSVEKIF----GGNLLGVKSSD-FICFYDWET-  135 (443)
T ss_dssp             EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT-
T ss_pred             cCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---ceEEcC-CcccceEE----cCcEEEEECCC-CEEEEEhhH-
Confidence            2445678899854  57777778899996 332222   112221 12344443    26677766555 899999999 


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                           ++.++++...  +|..+.|++++.++ |-.+ +..+.|++...
T Consensus       136 -----~~~i~~i~v~--~vk~V~Ws~~g~~v-al~t-~~~i~il~~~~  174 (443)
T PF04053_consen  136 -----GKLIRRIDVS--AVKYVIWSDDGELV-ALVT-KDSIYILKYNL  174 (443)
T ss_dssp             -------EEEEESS---E-EEEEE-TTSSEE-EEE--S-SEEEEEE-H
T ss_pred             -----cceeeEEecC--CCcEEEEECCCCEE-EEEe-CCeEEEEEecc
Confidence                 8899998743  48999999999964 4454 44677777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.07  E-value=0.0035  Score=53.93  Aligned_cols=277  Identities=14%  Similarity=0.150  Sum_probs=136.6

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--------CCceEEEEECCCCCEE
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAEFALAMCPTEPYV  102 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~~v~~~~~~~~~~~l  102 (387)
                      ...+....|+| +++.+|-.. ++.|.+++..++....-... .   ....+.|-.        -..-..+-||||+++|
T Consensus        42 ~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~d-g---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l  115 (353)
T PF00930_consen   42 PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTD-G---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL  115 (353)
T ss_dssp             ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred             ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccc-c---ceeEEcCccceeccccccccccceEECCCCCEE
Confidence            56788999999 788888765 56899998877632211110 0   001111111        0012478999999999


Q ss_pred             EEecC-CCeEEEEEcCCCcCccccCCC----cccCCCCCCceeccCCCCCCCCCCCCCCCCCCC--ce---eecCCCCCe
Q 016547          103 LSGGK-DKSVVLWSIQDHITSSATDPA----TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RG---IYNGHEDTV  172 (387)
Q Consensus       103 ~s~~~-d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~v  172 (387)
                      +.... +..|..+.+..........+.    .-..++....         ...+.+.+....+.  +.   .+.....-+
T Consensus       116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np---------~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl  186 (353)
T PF00930_consen  116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP---------RVSLFVVDLASGKTTELDPPNSLNPQDYYL  186 (353)
T ss_dssp             EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------------EEEEEEEESSSTCCCEE---HHHHTSSEEE
T ss_pred             EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC---------ceEEEEEECCCCcEEEeeeccccCCCccCc
Confidence            87654 344555544321111000000    0000010000         00001111111111  01   112335568


Q ss_pred             EEEEEccCCCeeEEE-ecCC---CeEEEEEccCCCCceeEEeeccCCCe---eEEEec-CCCCCeEEEeeCCCeEEEEEe
Q 016547          173 EDVTFCPSSAQEFCS-VGDD---SCLILWDARVGTSPVIKVEKAHDADL---HCVDWN-PLDDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~~l~~~~~dg~i~~~d~  244 (387)
                      ..+.|.+++..+++. ...+   ..+.+.|..++....... ......|   ....+. +.+..++.....+|.-+||-+
T Consensus       187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            899999998323333 2322   346777887766433332 2222332   245554 535667777778887666655


Q ss_pred             ccCCCCCCCCceEEeccccceEEE-EEEcCCCCeeEEEecCCC--eEEEEeCCCC-CceeccCCCCCCCCceeeeeeccC
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG--LLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ll~s~~~d~--~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      ...     +.....+....-.|.. +.++++++.++.++..++  .-.||.+... +.              ....+...
T Consensus       266 ~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--------------~~~~LT~~  326 (353)
T PF00930_consen  266 DLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--------------EPKCLTCE  326 (353)
T ss_dssp             ETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--------------EEEESSTT
T ss_pred             ccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--------------CeEeccCC
Confidence            542     3344555545556744 678888887776776532  4444444332 11              12223333


Q ss_pred             CCCeeEEEEccCCCeEEEEecC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...-..+.|+|++++++..++.
T Consensus       327 ~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  327 DGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             SSTTEEEEE-TTSSEEEEEEES
T ss_pred             CCCceEEEECCCCCEEEEEEcC
Confidence            2222699999999999988864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.04  E-value=0.00024  Score=65.58  Aligned_cols=138  Identities=17%  Similarity=0.236  Sum_probs=94.8

Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCC-eeEEEecC----CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE----E
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNP----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----K  258 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~~~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~  258 (387)
                      ......|+-.|+..++  .+..+..+... |..++-..    ..+...+.|-.++.+..||.|...    .+.+.    .
T Consensus       500 ~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v~~~~k~  573 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLVDSQSKQ  573 (794)
T ss_pred             CCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Cceeeccccc
Confidence            3456778888999888  66666666543 55544321    124456677788899999999632    11221    1


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      + ......+|++-+.+|.  +|.|+.+|.||+||--.  .             .....+.+-..+|..|..+.||+|+++
T Consensus       574 Y-~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g--~-------------~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  574 Y-SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG--K-------------RAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             c-ccCCCceEEEecCCce--EEEEeCCCcEEeecccc--h-------------hhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence            1 1344578888888886  67999999999999322  1             123345667789999999999999999


Q ss_pred             EecCCCCCCCCCceEEEEec
Q 016547          339 SVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +|-         ..|.+++.
T Consensus       636 Tc~---------tyLlLi~t  646 (794)
T PF08553_consen  636 TCK---------TYLLLIDT  646 (794)
T ss_pred             eec---------ceEEEEEE
Confidence            886         56777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.0015  Score=56.97  Aligned_cols=186  Identities=15%  Similarity=0.166  Sum_probs=105.0

Q ss_pred             CCcEEEEEecCCCCcEEEEe---cCC-CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-Ee
Q 016547           31 PGEVNRIRELPQNTKIVATH---TDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SG  105 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~  105 (387)
                      ...+..=+|+| ++..++-.   ... ..+.++++.+++.          ..+..+.++..    .-+|+|||++|+ +.
T Consensus       192 ~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~----------~~i~~~~g~~~----~P~fspDG~~l~f~~  256 (425)
T COG0823         192 GSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKR----------PVILNFNGNNG----APAFSPDGSKLAFSS  256 (425)
T ss_pred             CcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCcc----------ceeeccCCccC----CccCCCCCCEEEEEE
Confidence            34555667777 44443332   222 4689999998831          23333455543    679999999876 45


Q ss_pred             cCCCeEEEE--EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          106 GKDKSVVLW--SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       106 ~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      ..||...+|  |+.....                                         ..+..-.+.-..=.|+|+|..
T Consensus       257 ~rdg~~~iy~~dl~~~~~-----------------------------------------~~Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         257 SRDGSPDIYLMDLDGKNL-----------------------------------------PRLTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             CCCCCccEEEEcCCCCcc-----------------------------------------eecccCCccccCccCCCCCCE
Confidence            567766655  4443221                                         111111222224579999988


Q ss_pred             eEEEecCCCeEEEE--EccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-Ce--EEEEEeccCCCCCCCCceEE
Q 016547          184 EFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NS--VRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       184 ~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ++++.+..|.-.||  |.+....   ..+......-..-.|+| ++++++..+.. |.  |.+.|+.+      +..++.
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~------~~~~~~  365 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLAS------GGKIRI  365 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCC------CCcEEE
Confidence            88888888875555  5544442   22222222223778999 99988887753 44  55555554      222333


Q ss_pred             eccccceEEEEEEcCCCCeeEEEec
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~  283 (387)
                      +. .......-.|.++++.++.+.+
T Consensus       366 lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         366 LT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             cc-ccccCCCCCcCCCCceEEEecc
Confidence            32 3333445677788876554443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.02  E-value=0.00085  Score=59.94  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=73.3

Q ss_pred             ccCCCeeEEEecCCCeEEEEEccC----CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCC--
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSN--  250 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~--  250 (387)
                      .++| ++...  .++.|.+.|.++    +. .....+ .-......+.++| +++++++++. ++.+.++|+.+....  
T Consensus       285 vkdG-K~~~V--~gn~V~VID~~t~~~~~~-~v~~yI-PVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        285 VKAG-KFKTI--GGSKVPVVDGRKAANAGS-ALTRYV-PVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             hhCC-CEEEE--CCCEEEEEECCccccCCc-ceEEEE-ECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence            3455 33333  357899999987    22 133333 4556788999999 8887777665 899999999874210  


Q ss_pred             ----CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          251 ----GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       251 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                          .....+.+.+- .......+|.++|. .+.+.--|..|..||+..
T Consensus       359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                00011233332 33456788999987 577888899999999987

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.99  E-value=0.0017  Score=52.46  Aligned_cols=185  Identities=11%  Similarity=0.064  Sum_probs=101.8

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ++..+++++.++.+..||..++            +.+........  +.... ...+..++.++.++.+..+|..++...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG------------~~~W~~~~~~~--~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~   99 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTG------------KVLWRFDLPGP--ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVL   99 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTS------------EEEEEEECSSC--GGSGE-EEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCC------------CEEEEeecccc--cccee-eecccccccccceeeeEecccCCccee
Confidence            3445666688999999999998            34433333111  11111 123455566667889999998876543


Q ss_pred             ccc-CCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccC
Q 016547          123 SAT-DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV  201 (387)
Q Consensus       123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  201 (387)
                      ... ...                                    .... ...........+ ..++.+..++.|..+|+++
T Consensus       100 W~~~~~~------------------------------------~~~~-~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~t  141 (238)
T PF13360_consen  100 WSIYLTS------------------------------------SPPA-GVRSSSSPAVDG-DRLYVGTSSGKLVALDPKT  141 (238)
T ss_dssp             EEEEE-S------------------------------------SCTC-STB--SEEEEET-TEEEEEETCSEEEEEETTT
T ss_pred             eeecccc------------------------------------cccc-ccccccCceEec-CEEEEEeccCcEEEEecCC
Confidence            321 100                                    0000 011111222224 4677777799999999999


Q ss_pred             CCCceeEEeeccCCC----------e-eEEEecCCCCCeEEEeeCCCe-EEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547          202 GTSPVIKVEKAHDAD----------L-HCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  269 (387)
Q Consensus       202 ~~~~~~~~~~~~~~~----------i-~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (387)
                      ++  .+-........          + ..+.+.  ++ .+..++.++. +.+ |+.+      ++.+-+..  ...+..+
T Consensus       142 G~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~t------g~~~w~~~--~~~~~~~  207 (238)
T PF13360_consen  142 GK--LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLAT------GEKLWSKP--ISGIYSL  207 (238)
T ss_dssp             TE--EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTT------TEEEEEEC--SS-ECEC
T ss_pred             Cc--EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCC------CCEEEEec--CCCccCC
Confidence            88  33333332211          1 222222  34 6667777775 555 8888      66544333  2223221


Q ss_pred             EEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          270 QWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                       ....+..++ .++.++.|..||++++
T Consensus       208 -~~~~~~~l~-~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  208 -PSVDGGTLY-VTSSDGRLYALDLKTG  232 (238)
T ss_dssp             -EECCCTEEE-EEETTTEEEEEETTTT
T ss_pred             -ceeeCCEEE-EEeCCCEEEEEECCCC
Confidence             335666555 4558999999999985

...

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.96  E-value=0.0015  Score=44.15  Aligned_cols=103  Identities=11%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             eEEEEEc---cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          172 VEDVTFC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       172 v~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      |+++++.   .+|.+.|++|+.|..|++|+-.  +  .+.... -...|++++-..  ...|+.+-.+|+|-+|+...  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e--~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--E--IVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--c--EEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence            5566554   4556789999999999999744  2  334443 456788888776  47899999999999997653  


Q ss_pred             CCCCCCceEEeccccceEEEEEEcC---CCCeeEEEecCCCeEEE
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNI  290 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ll~s~~~d~~i~v  290 (387)
                            .+-.++... .+.++++..   +|..-|++|-.+|.|-+
T Consensus        73 ------RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 ------RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ------eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence                  333333222 255555433   34334568888888753

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=0.012  Score=51.71  Aligned_cols=227  Identities=11%  Similarity=0.118  Sum_probs=111.0

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      ...-....+.++| ++++++.+ .||...|+.....              .....+.    -....|.++++ +|+-...
T Consensus        30 ~~~~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~--------------r~k~~G~----g~~~vw~~~n~-yAv~~~~   88 (443)
T PF04053_consen   30 SCEIYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAW--------------RNKAFGS----GLSFVWSSRNR-YAVLESS   88 (443)
T ss_dssp             E-SS--SEEEE-T-TSSEEEEE-ETTEEEEEETTTT--------------EEEEEEE-----SEEEE-TSSE-EEEE-TT
T ss_pred             CCCcCCeeEEECC-CCCEEEEE-cCCEEEEEEccCC--------------cccccCc----eeEEEEecCcc-EEEEECC
Confidence            3555689999999 88888884 5677888874333              1122222    24788988655 5555557


Q ss_pred             CeEEEE-EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          109 KSVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       109 ~~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      ++|.++ ++++.. .                                        ..+.. ...+..+-.   | .+|..
T Consensus        89 ~~I~I~kn~~~~~-~----------------------------------------k~i~~-~~~~~~If~---G-~LL~~  122 (443)
T PF04053_consen   89 STIKIYKNFKNEV-V----------------------------------------KSIKL-PFSVEKIFG---G-NLLGV  122 (443)
T ss_dssp             S-EEEEETTEE-T-T----------------------------------------------SS-EEEEE----S-SSEEE
T ss_pred             CeEEEEEcCcccc-c----------------------------------------eEEcC-CcccceEEc---C-cEEEE
Confidence            889996 443211 0                                        00110 112333322   5 56666


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC-----CCCCCCCceEEeccc
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-----TSNGVGSPINKFEGH  262 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~~~  262 (387)
                      .+.+ .|.+||..+++  .+..+..  .+|..+.|++ ++++++..+.+ .+.+++....     ...+....+..+..-
T Consensus       123 ~~~~-~i~~yDw~~~~--~i~~i~v--~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~  195 (443)
T PF04053_consen  123 KSSD-FICFYDWETGK--LIRRIDV--SAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI  195 (443)
T ss_dssp             EETT-EEEEE-TTT----EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE
T ss_pred             ECCC-CEEEEEhhHcc--eeeEEec--CCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe
Confidence            5544 89999999887  5555542  2489999999 89999998766 5666665531     000001133333333


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...|.+.+|..+  .++.+.. . .|+-  +..+.                ...+..-..++.=+...|..+.+.     
T Consensus       196 ~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge----------------~~~i~~ld~~~yllgy~~~~~~ly-----  248 (443)
T PF04053_consen  196 SERIKSGCWVED--CFIYTTS-N-HLKY--LVNGE----------------TGIIAHLDKPLYLLGYLPKENRLY-----  248 (443)
T ss_dssp             -S--SEEEEETT--EEEEE-T-T-EEEE--EETTE----------------EEEEEE-SS--EEEEEETTTTEEE-----
T ss_pred             cceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCC----------------cceEEEcCCceEEEEEEccCCEEE-----
Confidence            567888999877  2333333 3 6665  33321                122222244666677777666665     


Q ss_pred             CCCCCCCCceEEEEecC
Q 016547          343 DCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~  359 (387)
                         ....|+.|..+.++
T Consensus       249 ---~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  249 ---LIDRDGNVISYELD  262 (443)
T ss_dssp             ---EE-TT--EEEEE--
T ss_pred             ---EEECCCCEEEEEEC
Confidence               34556888888877

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00028  Score=63.91  Aligned_cols=72  Identities=11%  Similarity=0.099  Sum_probs=60.5

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      .+++++|+| ..-+|+.|-.-|.+.+|...+.            +.-.....|+. +|..+.||++|..|+++..=|.|.
T Consensus        61 hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~------------e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~  126 (1416)
T KOG3617|consen   61 HATSLCWHP-EEFVLAQGWEMGVSDVQKTNTT------------ETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVH  126 (1416)
T ss_pred             ehhhhccCh-HHHHHhhccccceeEEEecCCc------------eeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeE
Confidence            456799999 7788999989999999998877            33344556766 789999999999999999999999


Q ss_pred             EEEcCC
Q 016547          113 LWSIQD  118 (387)
Q Consensus       113 vwd~~~  118 (387)
                      +|....
T Consensus       127 lwr~d~  132 (1416)
T KOG3617|consen  127 LWRYDV  132 (1416)
T ss_pred             EEEeee
Confidence            998873

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.92  E-value=0.0057  Score=51.90  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=72.0

Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ..++|++++-. .+ .++++.  ++.|.+|++...+.-...........+.++..   .++++++|.....+.++..+..
T Consensus        87 ~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   87 VKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEE  159 (321)
T ss_dssp             ESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETT
T ss_pred             ecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEcc
Confidence            46789998876 33 434333  47999999988771112222223335555555   4569999999888998866641


Q ss_pred             CCCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          248 TSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       248 ~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                           ...+..+  ......++++.|-+++. .++.+..+|.+.++....
T Consensus       160 -----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  160 -----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             -----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred             -----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence                 2222222  22355688999986666 456888999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.00024  Score=62.81  Aligned_cols=123  Identities=14%  Similarity=0.200  Sum_probs=86.1

Q ss_pred             cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                      +...+.--+++. .+.+++.|+.-|.+++|+....     ........+..+.+.....+++.. ++|.|+..|.|.++-
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~-----~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~q  104 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTG-----EMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQ  104 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCch-----hhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeeh
Confidence            334454455566 8899999999999999998752     112222223445566667777765 678999999999999


Q ss_pred             CCCCCceeccCCCCCCCCceeeee-eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          293 YEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +... .+...         ..+.. -..|...|++++|++++..++        +|...|.|..-.++.
T Consensus       105 l~~~-~p~~~---------~~~t~~d~~~~~rVTal~Ws~~~~k~y--------sGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  105 LNKE-LPRDL---------DYVTPCDKSHKCRVTALEWSKNGMKLY--------SGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcc-CCCcc---------eeeccccccCCceEEEEEecccccEEe--------ecCCCceEEEEEech
Confidence            9873 32111         01111 122778999999999999998        888999999998883

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.88  E-value=0.0039  Score=54.66  Aligned_cols=232  Identities=13%  Similarity=0.030  Sum_probs=109.1

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCce-EEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      +..+.+++.+|.+.-+|.++++..-.......   ...+.......+ ..+..  ++..++.++.+|.+..+|.++++..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEK---DGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCc---ccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCc
Confidence            34566677788999999988843221110000   000000000000 01111  3556777788999999999988766


Q ss_pred             cccCCCcccCCC--CCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe-----EEEEEccCCCeeEEEecCCCeEE
Q 016547          123 SATDPATAKSAG--SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLI  195 (387)
Q Consensus       123 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~~~~dg~i~  195 (387)
                      ............  -....+...  ...+.+...+..+++.+-.+.......     ..-... +  ..++.++.+|.+.
T Consensus       144 W~~~~~~~~~ssP~v~~~~v~v~--~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~--~~v~~~~~~g~v~  218 (394)
T PRK11138        144 WQTKVAGEALSRPVVSDGLVLVH--TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-F--GGAIVGGDNGRVS  218 (394)
T ss_pred             ccccCCCceecCCEEECCEEEEE--CCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-C--CEEEEEcCCCEEE
Confidence            554432211100  001111111  112222223333333332222110000     000111 2  2466677889999


Q ss_pred             EEEccCCCCceeEEeeccC--CC---eeEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEE
Q 016547          196 LWDARVGTSPVIKVEKAHD--AD---LHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  269 (387)
Q Consensus       196 iwd~~~~~~~~~~~~~~~~--~~---i~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~  269 (387)
                      .+|..+++..-........  ..   ...+..+| ..+..+++++.+|.+..+|..+      ++.+-+... . ....+
T Consensus       219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~-~-~~~~~  290 (394)
T PRK11138        219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS------GQIVWKREY-G-SVNDF  290 (394)
T ss_pred             EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC------CCEEEeecC-C-CccCc
Confidence            9998887631111110000  00   01111111 0245667777899999999988      665544331 1 11122


Q ss_pred             EEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          270 QWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       270 ~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ..  .+..++ .++.+|.+..+|..++
T Consensus       291 ~~--~~~~vy-~~~~~g~l~ald~~tG  314 (394)
T PRK11138        291 AV--DGGRIY-LVDQNDRVYALDTRGG  314 (394)
T ss_pred             EE--ECCEEE-EEcCCCeEEEEECCCC
Confidence            22  334454 5667899999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.0044  Score=49.61  Aligned_cols=178  Identities=10%  Similarity=0.111  Sum_probs=96.2

Q ss_pred             eecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-CCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      .+.+-...+.+++|.|+.+.++++....+.|..++.+ ++  .+....-. .+..-.|++.. ++.++++.-.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence            4455566799999999876888899999999888864 45  34443322 35577888876 66666665568999999


Q ss_pred             EeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC--ceeccCCCCCCCCceeee
Q 016547          243 DRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG--KKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~  315 (387)
                      ++..............+.     .++..+-.++|++.+..+++ +-+..-..+|.+....  ......     .. ....
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~-----~~-~~~~  164 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVS-----DD-QDLD  164 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEE-----E--HHHH
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeec-----cc-cccc
Confidence            985422110011112221     24456899999998887764 4555556777776411  100000     00 0000


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ........+.+++++|....+++-..       .+..|..+|..
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~-------es~~l~~~d~~  201 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSD-------ESRLLLELDRQ  201 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEET-------TTTEEEEE-TT
T ss_pred             cccceeccccceEEcCCCCeEEEEEC-------CCCeEEEECCC
Confidence            01123346789999998777776443       33788888855

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.85  E-value=0.0018  Score=43.77  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             eeEEEecCCC---CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547          217 LHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  293 (387)
Q Consensus       217 i~~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~  293 (387)
                      |++|++...+   .+.|++|+.|..||+|+-.        ..+.++.. ...|++++-...++  |+-+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGGR--FAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCCE--EEEEecCCEEEEEeC
Confidence            5666665433   3799999999999999754        46666663 45677887777765  677888999999987


Q ss_pred             CC
Q 016547          294 EK  295 (387)
Q Consensus       294 ~~  295 (387)
                      ..
T Consensus        71 ~~   72 (111)
T PF14783_consen   71 SQ   72 (111)
T ss_pred             cc
Confidence            54

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.84  E-value=0.006  Score=51.96  Aligned_cols=148  Identities=11%  Similarity=0.028  Sum_probs=64.1

Q ss_pred             CCeEEEEEccCCCCceeEEeeccC--CCeeEEEe--cCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-----
Q 016547          191 DSCLILWDARVGTSPVIKVEKAHD--ADLHCVDW--NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-----  261 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----  261 (387)
                      ..++++||+.+.+  .++.+....  ..+..+.|  .|....-++.+...++|..|--.....- ..+.+..+..     
T Consensus       221 G~~l~vWD~~~r~--~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  221 GHSLHVWDWSTRK--LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-AAEKVIDIPAKKVEG  297 (461)
T ss_dssp             --EEEEEETTTTE--EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-EEEEEEEE--EE--S
T ss_pred             cCeEEEEECCCCc--EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-eeeEEEECCCcccCc
Confidence            4789999999887  444443322  23445555  4522233444444555554433211000 0111222211     


Q ss_pred             ------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc----eeeeeeccCCCCee
Q 016547          262 ------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA----GLFFQHAGHRDKVV  325 (387)
Q Consensus       262 ------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~  325 (387)
                                  -..-|+.|..|.|.++|.+++-.+|.|+.||+.....+............    .....-..-.+...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq  377 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ  377 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence                        13458999999999999999999999999999987554321110000000    00000001122446


Q ss_pred             EEEEccCCCeEEEEec
Q 016547          326 DFHWNASDPWTVVSVS  341 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s  341 (387)
                      -+..|-||++|.++.|
T Consensus       378 MvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  378 MVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -EEE-TTSSEEEEE--
T ss_pred             eEEEccCCeEEEEEee
Confidence            6788999999998876

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00012  Score=63.79  Aligned_cols=94  Identities=14%  Similarity=0.292  Sum_probs=76.2

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCee-EEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ...+.-+.|+|.- .++|.+..+|.|.++.+.-.   .+-.++.+...++ +++|.| +|+.||+|-.||+|++.|..+ 
T Consensus        20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~-   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK-   93 (665)
T ss_pred             ccceEEEEEcCcc-chhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence            4568889999998 79999999999999988733   3666665677777 999999 999999999999999999998 


Q ss_pred             CCCCCCCceEEe-ccccceEEEEEEcC
Q 016547          248 TSNGVGSPINKF-EGHSAAVLCVQWSP  273 (387)
Q Consensus       248 ~~~~~~~~~~~~-~~~~~~i~~~~~~~  273 (387)
                           +..+..+ ......|.++.|.+
T Consensus        94 -----~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 -----GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             -----CCceeccccccccchheeeccc
Confidence                 5555552 23456788888864

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00016  Score=63.09  Aligned_cols=76  Identities=21%  Similarity=0.415  Sum_probs=66.9

Q ss_pred             CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE-EEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                      ...+..+.|+| .-.++|.+..+|.|.+..+.       .+.+.++..|+..++ +++|.|||+ ++|.|-.||+|++-|
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHD   90 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEE
Confidence            45678899999 99999999999999998887       678888887777777 999999998 678999999999999


Q ss_pred             CCCCCc
Q 016547          293 YEKVGK  298 (387)
Q Consensus       293 ~~~~~~  298 (387)
                      +.++..
T Consensus        91 ve~~~~   96 (665)
T KOG4640|consen   91 VEKGGR   96 (665)
T ss_pred             ccCCCc
Confidence            998644

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.79  E-value=0.0043  Score=48.48  Aligned_cols=112  Identities=16%  Similarity=0.199  Sum_probs=81.9

Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      +...++...+++.|+..+.+.--|..+++   +.....-...|.+-+.-  -+++++.|...|.+++.+.++      +.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~---~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs   84 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGN---LIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GS   84 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCc---EEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hh
Confidence            34456666789999999999999999988   33333334455544443  477899999999999999999      87


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      .+..+...+.-=......+++. ++..|+.|+..+..|.++...
T Consensus        85 ~~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   85 QIWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             heeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce
Confidence            7777765443333445567777 567999999999999988644

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.76  E-value=0.012  Score=50.05  Aligned_cols=195  Identities=13%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             CcEEEEecC---------C-CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547           44 TKIVATHTD---------S-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  113 (387)
Q Consensus        44 ~~~l~t~~~---------d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v  113 (387)
                      ..+++.|+.         . |.|.++++...+..       ..+..........++|++++-- ++. |+.+. .+.|.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-------~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v  111 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-------NFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYV  111 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------------EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEccccc-------ceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEE
Confidence            578887754         2 88999999884100       0011112122223478888776 444 44444 489999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      |++......                                     .....+. ....+.++...  + ++++.|.....
T Consensus       112 ~~l~~~~~l-------------------------------------~~~~~~~-~~~~i~sl~~~--~-~~I~vgD~~~s  150 (321)
T PF03178_consen  112 YDLDNSKTL-------------------------------------LKKAFYD-SPFYITSLSVF--K-NYILVGDAMKS  150 (321)
T ss_dssp             EEEETTSSE-------------------------------------EEEEEE--BSSSEEEEEEE--T-TEEEEEESSSS
T ss_pred             EEccCcccc-------------------------------------hhhheec-ceEEEEEEecc--c-cEEEEEEcccC
Confidence            999864300                                     0111111 22356666665  3 47888888788


Q ss_pred             EEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC-CC----ceEEeccccceEE
Q 016547          194 LILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GS----PINKFEGHSAAVL  267 (387)
Q Consensus       194 i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~----~~~~~~~~~~~i~  267 (387)
                      +.++..+........ ........++++.+-+ +++.++++..+|.+.++.......... +.    ....+. ....|+
T Consensus       151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~  228 (321)
T PF03178_consen  151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVN  228 (321)
T ss_dssp             EEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EE
T ss_pred             EEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccc
Confidence            887755543211111 1222355688888886 557999999999999998874222111 22    222232 345677


Q ss_pred             EE---EEcC--CCCe-----eEEEecCCCeEEEE
Q 016547          268 CV---QWSP--DKSS-----VFGSSAEDGLLNIW  291 (387)
Q Consensus       268 ~~---~~~~--~~~~-----ll~s~~~d~~i~vw  291 (387)
                      ++   .+.|  .+..     .++.++.+|.|-+.
T Consensus       229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            77   5555  2221     24466678888733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.75  E-value=0.012  Score=46.07  Aligned_cols=68  Identities=7%  Similarity=-0.106  Sum_probs=48.9

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  123 (387)
                      +++++.|...|.+++.+..++            .....+..-..-. ..-...+++..+..++.|+.....|..+..+..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tG------------s~~w~f~~~~~vk-~~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTG------------SQIWNFVILETVK-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecch------------hheeeeeehhhhc-cceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            567889999999999999998            3333333332211 133456789999999999999999998775544


Q ss_pred             c
Q 016547          124 A  124 (387)
Q Consensus       124 ~  124 (387)
                      .
T Consensus       130 k  130 (354)
T KOG4649|consen  130 K  130 (354)
T ss_pred             e
Confidence            4

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.025  Score=49.54  Aligned_cols=59  Identities=10%  Similarity=0.153  Sum_probs=37.9

Q ss_pred             CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +....+....++.+.+.+...      .+.   +. ..+++..++.||++++ +|.-..+|.+.+.+..-
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~------~~~---i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENS------FKQ---ID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDF  247 (410)
T ss_pred             CcceEEEEecCCEEEEEEccc------ccc---cc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcc
Confidence            444445555555665444332      111   22 2467999999999996 57777889998887654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.72  E-value=0.00011  Score=39.45  Aligned_cols=38  Identities=26%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS  115 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd  115 (387)
                      .+...+..|.. .|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566777776 799999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.71  E-value=0.0087  Score=49.53  Aligned_cols=271  Identities=12%  Similarity=0.123  Sum_probs=131.5

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------CCCeEEEEEcCCCcCcc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS  123 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~  123 (387)
                      +++.|.|.+++            +.+-.+..--   .-.+..+|+++.+++++          ..-.|.+||..+.....
T Consensus        17 ~rv~viD~d~~------------k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~   81 (342)
T PF06433_consen   17 SRVYVIDADSG------------KLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG   81 (342)
T ss_dssp             EEEEEEETTTT------------EEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCC------------cEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence            47899998887            4443333322   23567899999888643          34469999998763322


Q ss_pred             ccCCCc---cc--------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          124 ATDPAT---AK--------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       124 ~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      ......   ..        .....+......+-.-...+.+.+....+.+..+..  .  -|.-..|.++.-|.+-|.||
T Consensus        82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--P--GC~~iyP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   82 EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--P--GCWLIYPSGNRGFSMLCGDG  157 (342)
T ss_dssp             EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--T--SEEEEEEEETTEEEEEETTS
T ss_pred             eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--C--CEEEEEecCCCceEEEecCC
Confidence            211111   00        111111111111111122222333333322222211  0  12223344445588888999


Q ss_pred             eEEEEEccCCCCceeEE---eeccCCCe-eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-------
Q 016547          193 CLILWDARVGTSPVIKV---EKAHDADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-------  261 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~---~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-------  261 (387)
                      .+.-..+...-+...+.   +.....++ ..-++.. .+..++--+.+|.|+-.|+....    .+....+..       
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~----~~~~~~~~~~t~~e~~  232 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDS----AKFGKPWSLLTDAEKA  232 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSS----EEEEEEEESS-HHHHH
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCc----ccccCcccccCccccc
Confidence            99999888543222111   11111222 2233444 45556657889999999888521    111222211       


Q ss_pred             ---ccceEEEEEEcCCCCeeEEEec-------CCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547          262 ---HSAAVLCVQWSPDKSSVFGSSA-------EDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  329 (387)
Q Consensus       262 ---~~~~i~~~~~~~~~~~ll~s~~-------~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (387)
                         ..+...-+++++....|++.-.       .|+  .|.++|+.+.               +.+..+.- ..++.++..
T Consensus       233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------------krv~Ri~l-~~~~~Si~V  296 (342)
T PF06433_consen  233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------------KRVARIPL-EHPIDSIAV  296 (342)
T ss_dssp             TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------------EEEEEEEE-EEEESEEEE
T ss_pred             cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------------eEEEEEeC-CCccceEEE
Confidence               0122334667665554443221       122  2666666653               23333332 236779999


Q ss_pred             ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      +.+..-++.+.+      ..++.|.+||..      +++.++++.+-
T Consensus       297 sqd~~P~L~~~~------~~~~~l~v~D~~------tGk~~~~~~~l  331 (342)
T PF06433_consen  297 SQDDKPLLYALS------AGDGTLDVYDAA------TGKLVRSIEQL  331 (342)
T ss_dssp             ESSSS-EEEEEE------TTTTEEEEEETT------T--EEEEE---
T ss_pred             ccCCCcEEEEEc------CCCCeEEEEeCc------CCcEEeehhcc
Confidence            988775554322      234899999999      78888877643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.017  Score=46.39  Aligned_cols=172  Identities=13%  Similarity=0.232  Sum_probs=105.5

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE--EeccCCCceEEEEECCCCCEEEEe
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .|-.+.|.++.|+|++..++++ ...+.-.||=...+            ..+..  +.+-.+  -..|.+..+|++.++-
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~G------------dlirtiPL~g~~D--pE~Ieyig~n~fvi~d  146 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEG------------DLIRTIPLTGFSD--PETIEYIGGNQFVIVD  146 (316)
T ss_pred             ccccccccceeeCCCcceEEEe-cCCCceEEEEecCC------------ceEEEecccccCC--hhHeEEecCCEEEEEe
Confidence            4556669999999955544444 45455555544444            23322  344444  2478999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      -+++.+.++.+............                              .-++..........-.++|.|.+ ..|
T Consensus       147 ER~~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d~~~-~~l  195 (316)
T COG3204         147 ERDRALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWDPVD-HRL  195 (316)
T ss_pred             hhcceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecCCCC-ceE
Confidence            89999999988754322211110                              00111112225567889999998 566


Q ss_pred             EEecCCCeEEEEEccCCCCcee-EEeecc-------CCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          186 CSVGDDSCLILWDARVGTSPVI-KVEKAH-------DADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      +.+-+-.-+.||.......... .....+       -..+.++.|++..+.+|+.+..++.+.-.|..
T Consensus       196 ~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         196 FVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             EEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            6666666677776654331111 111111       23467888988678888888888888888877

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.015  Score=48.45  Aligned_cols=181  Identities=11%  Similarity=0.124  Sum_probs=97.2

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-ceeEEee-c-cCCCeeEEEecCCCCCeEEEeeC-----------CC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVEK-A-HDADLHCVDWNPLDDNLILTGSA-----------DN  237 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~-----------dg  237 (387)
                      +.++.....+ ..|+++..  .+.+++.+++.. ....... + .....+.+...| ++.+.++...           -|
T Consensus        68 ~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          68 FSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             cccceeecCC-CeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcc
Confidence            3444443333 34555433  356666655442 1111111 1 123456777888 7766655443           12


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      .++.+|. .      +..+..+..+-..-+.|+||||++.++++=+..+.|.-|++....-..        .........
T Consensus       144 ~lyr~~p-~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--------~~~~~~~~~  208 (307)
T COG3386         144 SLYRVDP-D------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--------GGRRGFVDF  208 (307)
T ss_pred             eEEEEcC-C------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--------CCcceEEEc
Confidence            2333332 2      445555555455668999999999888888888999999887411110        000112222


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      ....+..-.++...+|.+.++       .....+.|.+|+..       ++++.++.-....+++++|
T Consensus       209 ~~~~G~PDG~~vDadG~lw~~-------a~~~g~~v~~~~pd-------G~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         209 DEEPGLPDGMAVDADGNLWVA-------AVWGGGRVVRFNPD-------GKLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             cCCCCCCCceEEeCCCCEEEe-------cccCCceEEEECCC-------CcEEEEEECCCCCCccceE
Confidence            334556667777777776642       11222488888877       5566655544455555554

>smart00320 WD40 WD40 repeats

Probab=97.68  E-value=0.00016  Score=38.81  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=29.3

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWD   60 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd   60 (387)
                      ...|.+.|.++.|.+ .+.++++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            346899999999999 668999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.66  E-value=0.036  Score=49.05  Aligned_cols=246  Identities=13%  Similarity=0.062  Sum_probs=126.9

Q ss_pred             EEEEEecCCCCcEEEEe-cCCC----cEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEecC
Q 016547           34 VNRIRELPQNTKIVATH-TDSP----DVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      +....++| +++++|-+ +..|    .+++.|++++            +.+. .+....   -..+.|.++++.|+....
T Consensus       126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg------------~~l~d~i~~~~---~~~~~W~~d~~~~~y~~~  189 (414)
T PF02897_consen  126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETG------------KFLPDGIENPK---FSSVSWSDDGKGFFYTRF  189 (414)
T ss_dssp             EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTT------------EEEEEEEEEEE---SEEEEECTTSSEEEEEEC
T ss_pred             eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCC------------cCcCCcccccc---cceEEEeCCCCEEEEEEe
Confidence            34567788 77777654 3444    5999999998            2222 222221   124999999887765442


Q ss_pred             C-----------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC--eEE
Q 016547          108 D-----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT--VED  174 (387)
Q Consensus       108 d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~  174 (387)
                      +           ..|..|.+.+....                                      ....+......  ...
T Consensus       190 ~~~~~~~~~~~~~~v~~~~~gt~~~~--------------------------------------d~lvfe~~~~~~~~~~  231 (414)
T PF02897_consen  190 DEDQRTSDSGYPRQVYRHKLGTPQSE--------------------------------------DELVFEEPDEPFWFVS  231 (414)
T ss_dssp             STTTSS-CCGCCEEEEEEETTS-GGG---------------------------------------EEEEC-TTCTTSEEE
T ss_pred             CcccccccCCCCcEEEEEECCCChHh--------------------------------------CeeEEeecCCCcEEEE
Confidence            2           23777777654221                                      01233332222  567


Q ss_pred             EEEccCCCeeEEEecCC---CeEEEEEccCC---CCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---CCeEEEEEec
Q 016547          175 VTFCPSSAQEFCSVGDD---SCLILWDARVG---TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRR  245 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~~~d~~  245 (387)
                      +..++++..+++.....   ..+.+.|+...   .. ....+......+....-+. ++.+++....   .+.|.-.++.
T Consensus       232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~  309 (414)
T PF02897_consen  232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLA  309 (414)
T ss_dssp             EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETT
T ss_pred             EEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccc
Confidence            88899985444443332   45778888764   21 2333333333343333232 3444444332   3566666766


Q ss_pred             cCCCCCCCCceEEeccccc--eEEEEEEcCCCCeeEEEecCCCe--EEEEeCC-CCCceeccCCCCCCCCceeeeeeccC
Q 016547          246 NLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE-KVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      ....   ......+-.+..  .+..+..  .+.+|++....++.  |+++++. .. ..              ......-
T Consensus       310 ~~~~---~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~-~~--------------~~~~~p~  369 (414)
T PF02897_consen  310 DPSP---AEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK-ES--------------REIPLPE  369 (414)
T ss_dssp             STSG---GGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE-EE--------------EEEESSS
T ss_pred             cccc---ccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc-EE--------------eeecCCc
Confidence            6321   112224444544  4555554  45557767666654  7788888 32 11              1111112


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+.|..+...++.+.+.++.+    +=-.-+++..||+.
T Consensus       370 ~g~v~~~~~~~~~~~~~~~~s----s~~~P~~~y~~d~~  404 (414)
T PF02897_consen  370 AGSVSGVSGDFDSDELRFSYS----SFTTPPTVYRYDLA  404 (414)
T ss_dssp             SSEEEEEES-TT-SEEEEEEE----ETTEEEEEEEEETT
T ss_pred             ceEEeccCCCCCCCEEEEEEe----CCCCCCEEEEEECC
Confidence            344667777777777777665    23344788888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.66  E-value=8.2e-05  Score=56.62  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ..+++|+.+|.|.+|....... ...........|-++--.-.++.+..++..||.|+.|++.-      .+.+-....|
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h  143 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH  143 (238)
T ss_pred             ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence            5799999999999998763221 11111122233333322222556899999999999999886      5666666666


Q ss_pred             c-ceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCC
Q 016547          263 S-AAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKV  296 (387)
Q Consensus       263 ~-~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~  296 (387)
                      . .++..+..+..++. ++..  |.|..++.|++...
T Consensus       144 ~~~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEF-LKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cCCCcceeEEecCCce-EEeeccccchhhhhcchhhh
Confidence            6 44555555555553 4555  66777778877653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.65  E-value=0.035  Score=48.66  Aligned_cols=86  Identities=7%  Similarity=0.128  Sum_probs=54.5

Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      ++.+. ...+....++.+.+.+-...+     .. ...+++..|++|| +++++|.-..+|.+.+.+..-      .+.+
T Consensus       186 l~~~~-~~~i~~~~g~~i~~i~~~~~~-----~i-~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf------~~~~  251 (410)
T PF04841_consen  186 LSSDR-VVEILLANGETIYIIDENSFK-----QI-DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF------SEKL  251 (410)
T ss_pred             eecCc-ceEEEEecCCEEEEEEccccc-----cc-cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc------ccee
Confidence            44444 344444555666655433222     11 2346899999999 999999999999998887654      4555


Q ss_pred             EEeccc-cceEEEEEEcCCCC
Q 016547          257 NKFEGH-SAAVLCVQWSPDKS  276 (387)
Q Consensus       257 ~~~~~~-~~~i~~~~~~~~~~  276 (387)
                      .++... ......+.|+.+..
T Consensus       252 ~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  252 CEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEeecCcCCCCcEEEEECCCc
Confidence            555433 34556777776654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.60  E-value=0.027  Score=51.58  Aligned_cols=151  Identities=13%  Similarity=0.049  Sum_probs=80.3

Q ss_pred             eeEEEecCCCe-----EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC------eEEEEEeccCCCCC
Q 016547          183 QEFCSVGDDSC-----LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRNLTSNG  251 (387)
Q Consensus       183 ~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~  251 (387)
                      .+.++|+.||.     +-.||..+.++........   ..........++.+.++|+.++      .+..||..+..   
T Consensus       382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~---  455 (571)
T KOG4441|consen  382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT---  455 (571)
T ss_pred             EEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence            78899998865     7788888877543332222   2222222222788888888665      46677777633   


Q ss_pred             CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe-----EEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                       +..+........... ++.- ++ .|++.|+.|+.     |..||.....             +..+.......   ..
T Consensus       456 -W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~-------------W~~v~~m~~~r---s~  515 (571)
T KOG4441|consen  456 -WTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ-------------WTMVAPMTSPR---SA  515 (571)
T ss_pred             -eeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc-------------eeEcccCcccc---cc
Confidence             333333332222222 2222 23 37888887763     6667766531             11121111122   22


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      +.....+..+.+.++.|  -...-++|..||....
T Consensus       516 ~g~~~~~~~ly~vGG~~--~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  516 VGVVVLGGKLYAVGGFD--GNNNLNTVECYDPETD  548 (571)
T ss_pred             ccEEEECCEEEEEeccc--CccccceeEEcCCCCC
Confidence            22222355667766555  4444468888877643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.043  Score=47.72  Aligned_cols=198  Identities=16%  Similarity=0.175  Sum_probs=127.0

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC---CCeE
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSV  111 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i  111 (387)
                      ..++.++...+..++...++.|.+.|..+.            +......--..  -..++++++++.+..+..   ++++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~------------~~~~~~~vG~~--P~~~~~~~~~~~vYV~n~~~~~~~v  142 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN------------TVLGSIPVGLG--PVGLAVDPDGKYVYVANAGNGNNTV  142 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCccc------------ceeeEeeeccC--CceEEECCCCCEEEEEecccCCceE
Confidence            466677755557777777789999996666            23332222222  258999999988776655   5777


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      .+.|..+......                                        ...-..+ ..+++.|++...+++-..+
T Consensus       143 svid~~t~~~~~~----------------------------------------~~vG~~P-~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         143 SVIDAATNKVTAT----------------------------------------IPVGNTP-TGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             EEEeCCCCeEEEE----------------------------------------EecCCCc-ceEEECCCCCeEEEEecCC
Confidence            7777765433221                                        1111133 7899999995566666689


Q ss_pred             CeEEEEEccCCCCceeEE----eeccCCCeeEEEecCCCCCeEEEeeCC---CeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          192 SCLILWDARVGTSPVIKV----EKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +.|.+.|.....  ....    ...-......+.++| ++.++.+....   +.+...|..+      +.....-..-..
T Consensus       182 ~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~~~  252 (381)
T COG3391         182 NTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPVGS  252 (381)
T ss_pred             CeEEEEeCCCcc--eeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEecccccc
Confidence            999999976654  2210    112233456788999 78766555443   5888888876      444333111112


Q ss_pred             -eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          265 -AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       265 -~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                       ....+..+|+|.++.+.-+..+.+.+-|....
T Consensus       253 ~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             CCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence             45678999999987766566688998888774

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.57  E-value=0.033  Score=46.15  Aligned_cols=156  Identities=13%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      .++.|+.|+.+| +.+++.....           .........   .|..+...++-+.|++-+ |+.+.++++......
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~-----------~~~~i~~~~---~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPS-----------KPTRILKLS---SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV   69 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCc-----------cceeEeecc---eEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence            567888999998 9999983321           222222221   388999988877777665 599999999764332


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE--EccCCCeeEEEecCCCeEEEEEcc
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT--FCPSSAQEFCSVGDDSCLILWDAR  200 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~  200 (387)
                      ....+..                          ................+...+  -...+...++ ......|.+|...
T Consensus        70 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~  122 (275)
T PF00780_consen   70 STSAPLA--------------------------FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWN  122 (275)
T ss_pred             ccccccc--------------------------ccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEE
Confidence            2110000                          000000000111223344444  1223323344 4445588888877


Q ss_pred             CCCC---ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          201 VGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       201 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ....   ...+.+ .-...+..++|.   ++.++.|..++ ..+.|+.+
T Consensus       123 ~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v~~~~~-f~~idl~~  166 (275)
T PF00780_consen  123 DPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICVGTSKG-FYLIDLNT  166 (275)
T ss_pred             CCcccccceeEEE-EcCCCcEEEEEe---CCEEEEEeCCc-eEEEecCC
Confidence            6421   123333 345788999997   46777776555 66788886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.051  Score=47.27  Aligned_cols=194  Identities=15%  Similarity=0.166  Sum_probs=123.6

Q ss_pred             EEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           91 FALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        91 ~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      ..++.++.+..+. ....++.|.+.|.........                                       ...+. 
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---------------------------------------~~vG~-  116 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---------------------------------------IPVGL-  116 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---------------------------------------eeecc-
Confidence            4778888888554 444568899998554322110                                       01111 


Q ss_pred             CCeEEEEEccCCCeeEEEec--CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEecc
Q 016547          170 DTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN  246 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~  246 (387)
                       ....+++.+++....++-.  .++.+.+.|..+.+  ..........+ ..++++| ++..+.+.. .++.|.++|...
T Consensus       117 -~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         117 -GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             -CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCC
Confidence             4567899999866666655  47888888888776  34443333334 8999999 888665555 789999999775


Q ss_pred             CCCCCCCCceE-----EeccccceEEEEEEcCCCCeeEEEecCC--CeEEEEeCCCCCceeccCCCCCCCCceeeee--e
Q 016547          247 LTSNGVGSPIN-----KFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--H  317 (387)
Q Consensus       247 ~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~  317 (387)
                            .....     ... -......+.++|++.++.+....+  +.+...|......               ...  .
T Consensus       192 ------~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v---------------~~~~~~  249 (381)
T COG3391         192 ------NSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV---------------TATDLP  249 (381)
T ss_pred             ------cceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE---------------EEeccc
Confidence                  22221     122 223346789999999777666555  5888888877421               111  1


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+.. ....+..+|+|.++.++-+.       .+.+.+-|..
T Consensus       250 ~~~~-~~~~v~~~p~g~~~yv~~~~-------~~~V~vid~~  283 (381)
T COG3391         250 VGSG-APRGVAVDPAGKAAYVANSQ-------GGTVSVIDGA  283 (381)
T ss_pred             cccC-CCCceeECCCCCEEEEEecC-------CCeEEEEeCC
Confidence            1112 45678899999988865443       3788888877

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.50  E-value=0.044  Score=49.51  Aligned_cols=75  Identities=9%  Similarity=-0.091  Sum_probs=40.8

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCce-EEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  123 (387)
                      ..+..++.++.|.-.|..+++..-........      .......+ ..+... ++..++.++.++.|.-+|.++++...
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEee
Confidence            34566677899999999888433221100000      00000000 011111 22577778889999999998886654


Q ss_pred             ccC
Q 016547          124 ATD  126 (387)
Q Consensus       124 ~~~  126 (387)
                      ...
T Consensus       135 ~~~  137 (488)
T cd00216         135 KFG  137 (488)
T ss_pred             eec
Confidence            443

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.061  Score=44.84  Aligned_cols=229  Identities=10%  Similarity=0.039  Sum_probs=123.4

Q ss_pred             EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcC
Q 016547           38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ  117 (387)
Q Consensus        38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~  117 (387)
                      .|.+..+.++.+--..+.|.-|+..+++             ...+.....  +.++..-..+..|+++.  .-+.+++.+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-------------~~~~~~p~~--~~~~~~~d~~g~Lv~~~--~g~~~~~~~   93 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGK-------------KRVFPSPGG--FSSGALIDAGGRLIACE--HGVRLLDPD   93 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCc-------------eEEEECCCC--cccceeecCCCeEEEEc--cccEEEecc
Confidence            4667555577777778889999887662             233333332  34554444555666654  345566654


Q ss_pred             CCcC-ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC------
Q 016547          118 DHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD------  190 (387)
Q Consensus       118 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------  190 (387)
                      ++.. ......                             ..       .......+.+...|+| .+.++...      
T Consensus        94 ~~~~~t~~~~~-----------------------------~~-------~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~  136 (307)
T COG3386          94 TGGKITLLAEP-----------------------------ED-------GLPLNRPNDGVVDPDG-RIWFGDMGYFDLGK  136 (307)
T ss_pred             CCceeEEeccc-----------------------------cC-------CCCcCCCCceeEcCCC-CEEEeCCCccccCc
Confidence            3322 100000                             00       0011344566777777 43333222      


Q ss_pred             -----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCc-eEEecccc
Q 016547          191 -----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP-INKFEGHS  263 (387)
Q Consensus       191 -----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~-~~~~~~~~  263 (387)
                           -|.++.+|. .+.  ..+....+-...+.|+|+| +++.|..+.. .+.|.-|++.........+. ...+....
T Consensus       137 ~~~~~~G~lyr~~p-~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~  212 (307)
T COG3386         137 SEERPTGSLYRVDP-DGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEP  212 (307)
T ss_pred             cccCCcceEEEEcC-CCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCC
Confidence                 133444443 233  3444445556678999999 8877776655 47888887763111111121 22222334


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCC-eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCCCeEEEEec
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVS  341 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~s~s  341 (387)
                      +..-.++...+|.. .+++..+| .|.+|+.. +               .++....-....+++++|- |+.+.|++++.
T Consensus       213 G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G---------------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         213 GLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-G---------------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCceEEeCCCCE-EEecccCCceEEEECCC-C---------------cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            55667777788874 43343343 89999988 3               2233334444677888884 45566766554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.012  Score=55.69  Aligned_cols=159  Identities=10%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             eEEEeccCCCceEEEEECCCCCEEEE--ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           79 DLILTGHQDNAEFALAMCPTEPYVLS--GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        79 ~~~~~~h~~~~v~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      ...+..|...++..+...+|++..+.  .+.+-.|..+|+++-......                               
T Consensus        92 ~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-------------------------------  140 (1405)
T KOG3630|consen   92 NLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-------------------------------  140 (1405)
T ss_pred             ccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-------------------------------
Confidence            34566666666777777888776443  344457889999764221110                               


Q ss_pred             CCCCCc---eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547          157 PSVGPR---GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  233 (387)
Q Consensus       157 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (387)
                       +..++   ...........++.|.|.-....+.+..|+.|++..+......+ .. .......++++|+| .|..++.|
T Consensus       141 -~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v-~s-~p~t~~~Tav~WSp-rGKQl~iG  216 (1405)
T KOG3630|consen  141 -TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV-TS-FPVTNSQTAVLWSP-RGKQLFIG  216 (1405)
T ss_pred             -hccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhh-cc-cCcccceeeEEecc-ccceeeEe
Confidence             00010   11112234567889998876678888899999998776544222 22 23456789999999 99999999


Q ss_pred             eCCCeEEEEEeccCCCCCCCCceEEecc----ccceEEEEEEcCCCCeeE
Q 016547          234 SADNSVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVF  279 (387)
Q Consensus       234 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~ll  279 (387)
                      ...|++.-|-..       .+...++..    ....|.+|.|-....+++
T Consensus       217 ~nnGt~vQy~P~-------leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  217 RNNGTEVQYEPS-------LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             cCCCeEEEeecc-------cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            999999888655       232233221    136799999988777654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.30  E-value=0.0011  Score=37.36  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEecc
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE   62 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~   62 (387)
                      ....|.+++|+| ..++||.|+.+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            456799999999 88999999999999999984

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.0016  Score=60.79  Aligned_cols=65  Identities=22%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+..++.|+..|.+-..|++..     -.+...-..-.++|++++|+.+|+. ++.|-.+|.|.+||+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~~-l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGSL-LLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCce-eccccCCCcEEEEEccCC
Confidence            5678999999999999998852     1222333334689999999999995 568888999999999985

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.28  E-value=0.092  Score=44.60  Aligned_cols=69  Identities=10%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             ecCCCCcEEEEecCCCc--EEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEc
Q 016547           39 ELPQNTKIVATHTDSPD--VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  116 (387)
Q Consensus        39 ~~~~~~~~l~t~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~  116 (387)
                      |.++..++|..+..||.  +.+-|+.++            + +..|....+.......++++++.++-......|+--|+
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~------------~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL  109 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATG------------E-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL  109 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-------------E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccC------------E-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence            34433355555555654  555677766            2 23333332212235667788888766555568888888


Q ss_pred             CCCc
Q 016547          117 QDHI  120 (387)
Q Consensus       117 ~~~~  120 (387)
                      ++.+
T Consensus       110 ~T~e  113 (386)
T PF14583_consen  110 DTLE  113 (386)
T ss_dssp             TT--
T ss_pred             CcCc
Confidence            7653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.015  Score=50.45  Aligned_cols=143  Identities=18%  Similarity=0.203  Sum_probs=95.8

Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC-------CeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-------NLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      -+|.++.....++-.|++.++  .+.....+.. |+-+.+.| +.       ..-+.|=.|..|.-||.|-..    ...
T Consensus       347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~k  418 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNK  418 (644)
T ss_pred             eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccC----cce
Confidence            455566666778888998888  5666655554 66666666 32       223456678889999999532    112


Q ss_pred             eEEecccc----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          256 INKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       256 ~~~~~~~~----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      +..-++|+    ....|++-..+|.  +|.|+.+|.|++||--..               .....+.+-..+|..+..+.
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG~--IvvgS~~GdIRLYdri~~---------------~AKTAlPgLG~~I~hVdvta  481 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESGY--IVVGSLKGDIRLYDRIGR---------------RAKTALPGLGDAIKHVDVTA  481 (644)
T ss_pred             eeeeeccccccccccceeeecCCce--EEEeecCCcEEeehhhhh---------------hhhhcccccCCceeeEEeec
Confidence            33333332    3456777777774  579999999999997332               12334567788999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +|.+++++|-         ..+.+-++.
T Consensus       482 dGKwil~Tc~---------tyLlLi~t~  500 (644)
T KOG2395|consen  482 DGKWILATCK---------TYLLLIDTL  500 (644)
T ss_pred             cCcEEEEecc---------cEEEEEEEe
Confidence            9999998774         566666654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.22  E-value=0.00083  Score=51.33  Aligned_cols=144  Identities=13%  Similarity=0.166  Sum_probs=78.9

Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      .+..-+.+|.|.-++++..+..+ +....+...    .-.+..+..+++|+.+|.|.+|.....     +........-.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~  101 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESC-RSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE  101 (238)
T ss_pred             hhccccCCcccccchhhhhhhhh-hhhhhhhcc----eeecccCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence            45556778888888887655221 111112222    111225678999999999999987732     22211111122


Q ss_pred             ceEEEEEEcCCCCe--eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC-CCeeEEEEccCCCeEEEEe
Q 016547          264 AAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       264 ~~i~~~~~~~~~~~--ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~s~  340 (387)
                      ..|.++.  |.++.  +..+++.||.|+.|++....               .+.....|. .++..+..+..++.+..+ 
T Consensus       102 e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k---------------~~g~~g~h~~~~~e~~ivv~sd~~i~~a-  163 (238)
T KOG2444|consen  102 ESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNK---------------VLGYVGQHNFESGEELIVVGSDEFLKIA-  163 (238)
T ss_pred             ccceecc--ccccccceeEEeccCCceeeeccccCc---------------eeeeeccccCCCcceeEEecCCceEEee-
Confidence            2333332  33322  67789999999999988642               233333444 344444444444444321 


Q ss_pred             cCCCCCCCCCceEEEEecCC
Q 016547          341 SDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~  360 (387)
                           --|.|..++.|++..
T Consensus       164 -----~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  164 -----DTSHDRVLKKWNVEK  178 (238)
T ss_pred             -----ccccchhhhhcchhh
Confidence                 125557788888763

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.21  E-value=0.06  Score=49.44  Aligned_cols=141  Identities=15%  Similarity=0.119  Sum_probs=75.7

Q ss_pred             CCeEEEEEccCCCeeEEEec-----CCC--eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-----
Q 016547          170 DTVEDVTFCPSSAQEFCSVG-----DDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----  237 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----  237 (387)
                      ..+...+++|++....++..     .|.  .|.+++.....   .....+  ...+.-.|+| ++..+++.....     
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence            45778899999955444441     244  45555542222   111222  2478889999 888777765432     


Q ss_pred             -------eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC--CCceeccCCCCCC
Q 016547          238 -------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTN  308 (387)
Q Consensus       238 -------~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~  308 (387)
                             .+.+.++..      +....   .....|..+.|||||.++++..  ++.|.+=-+..  .+.. ..      
T Consensus       424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~-~l------  485 (591)
T PRK13616        424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQY-AL------  485 (591)
T ss_pred             eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCce-ee------
Confidence                   222223322      21111   2346799999999999876554  47777733222  1111 00      


Q ss_pred             CCceeeeeeccCCCCeeEEEEccCCCeE
Q 016547          309 YPAGLFFQHAGHRDKVVDFHWNASDPWT  336 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l  336 (387)
                        ........+-...+.++.|..++..+
T Consensus       486 --~~~~~l~~~l~~~~~~l~W~~~~~L~  511 (591)
T PRK13616        486 --TNPREVGPGLGDTAVSLDWRTGDSLV  511 (591)
T ss_pred             --cccEEeecccCCccccceEecCCEEE
Confidence              00111112233346889999988744

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.17  Score=44.86  Aligned_cols=208  Identities=12%  Similarity=0.087  Sum_probs=107.5

Q ss_pred             eEEEEECCCCCEEEEe-cC----CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           90 EFALAMCPTEPYVLSG-GK----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~-~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      +....++|+|+++|.+ +.    ...+++.|++++.....                                       .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d---------------------------------------~  166 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD---------------------------------------G  166 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE---------------------------------------E
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC---------------------------------------c
Confidence            4468899999998743 22    24699999987632210                                       1


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCC----------CeEEEEEccCCCCceeEEeeccCCC--eeEEEecCCCCCeEEE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKAHDAD--LHCVDWNPLDDNLILT  232 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~  232 (387)
                      +..  .....+.|.+++..++.+...+          ..|+.|.+.+....-...+......  ...+..++ ++++++.
T Consensus       167 i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i  243 (414)
T PF02897_consen  167 IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFI  243 (414)
T ss_dssp             EEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEE
T ss_pred             ccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEE
Confidence            111  1122399999985555554332          3478888877654323334333332  56788888 8888776


Q ss_pred             eeCC----CeEEEEEeccCCCCCCCCceEEeccccceE-EEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCC
Q 016547          233 GSAD----NSVRMFDRRNLTSNGVGSPINKFEGHSAAV-LCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       233 ~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~  305 (387)
                      .+..    ..+.+.|+..... . ......+......+ ..+... .+.+++.+-  ..++.|.-.++......      
T Consensus       244 ~~~~~~~~s~v~~~d~~~~~~-~-~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------  314 (414)
T PF02897_consen  244 SSSSGTSESEVYLLDLDDGGS-P-DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------  314 (414)
T ss_dssp             EEESSSSEEEEEEEECCCTTT-S-S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------
T ss_pred             EEEccccCCeEEEEeccccCC-C-cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------
Confidence            5443    3477777775200 0 12233333233333 333333 444333332  23466777777764321      


Q ss_pred             CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          306 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                            .....+..+...+.-..+...+.+|++....+     ....|+++++.
T Consensus       315 ------~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-----~~~~l~v~~~~  357 (414)
T PF02897_consen  315 ------EWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-----GSSRLRVYDLD  357 (414)
T ss_dssp             ------GEEEEEE--SSSEEEEEEEEETTEEEEEEEET-----TEEEEEEEETT
T ss_pred             ------cceeEEcCCCCceeEEEEEEECCEEEEEEEEC-----CccEEEEEECC
Confidence                  11113344554333333444577888877654     23578888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.12  E-value=0.15  Score=43.95  Aligned_cols=173  Identities=14%  Similarity=0.110  Sum_probs=79.4

Q ss_pred             EEEEEccCCCeeEEEec------CCCeEEEEEccCCCCceeEEeec---cCCCeeEEEecCCCCCeEEEee---------
Q 016547          173 EDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKA---HDADLHCVDWNPLDDNLILTGS---------  234 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~---------  234 (387)
                      ..+...|+| .+++++-      .-|.+.+.|-++.+  .......   ....-+.+-|.| ..+.+++..         
T Consensus       133 HT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~  208 (461)
T PF05694_consen  133 HTVHCLPDG-RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEK  208 (461)
T ss_dssp             EEEEE-SS---EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT
T ss_pred             ceeeecCCc-cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhccc
Confidence            344556777 6666642      23557777777655  2333222   122345677888 777777764         


Q ss_pred             -----------CCCeEEEEEeccCCCCCCCCceEEecccc--ceEEEEEEc--CCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547          235 -----------ADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKK  299 (387)
Q Consensus       235 -----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~ll~s~~~d~~i~vwd~~~~~~~  299 (387)
                                 ...++.+||+.+      .+.++++.--+  .....+.|.  |+..+=|+.+.-.+.|..|--...+.-
T Consensus       209 Gf~~~d~~~~~yG~~l~vWD~~~------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W  282 (461)
T PF05694_consen  209 GFNPEDLEAGKYGHSLHVWDWST------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW  282 (461)
T ss_dssp             ---TTTHHHH-S--EEEEEETTT------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE
T ss_pred             CCChhHhhcccccCeEEEEECCC------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe
Confidence                       245799999998      78888876322  235566664  455555555555666666554222221


Q ss_pred             ec----cCCCCCCCCc---eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547          300 VE----QGPRTTNYPA---GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       300 ~~----~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                      ..    ..+.......   ..+..+..-..-|+++..|.|.++|.+++=.+       |.|+.||+.++.
T Consensus       283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-------GdvrqYDISDP~  345 (461)
T PF05694_consen  283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-------GDVRQYDISDPF  345 (461)
T ss_dssp             EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-------TEEEEEE-SSTT
T ss_pred             eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-------CcEEEEecCCCC
Confidence            10    0000000000   00111111234689999999999999966555       999999999754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.08  E-value=0.024  Score=51.96  Aligned_cols=93  Identities=10%  Similarity=0.064  Sum_probs=50.6

Q ss_pred             eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC------eEEEEEecc-CCCCCCCCceEEeccccce
Q 016547          193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN-LTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~~~d~~~-~~~~~~~~~~~~~~~~~~~  265 (387)
                      .+..||.++.++............ .+++..  ++.+.+.|+.++      .+..||..+ ..    +..+..+......
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~  505 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA  505 (557)
T ss_pred             eEEEECCCCCeEeecCCCCccccc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence            477888887765333222111111 122222  577777777542      356788775 22    4544444433333


Q ss_pred             EEEEEEcCCCCeeEEEecCCC--eEEEEeCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK  295 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~  295 (387)
                      ...+++  +++ |++.|+.++  .+..||..+
T Consensus       506 ~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        506 LHTILH--DNT-IMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ceeEEE--CCE-EEEEeeecceeehhhcCccc
Confidence            333333  344 788999888  666777665

>PHA02713 hypothetical protein; Provisional

Probab=97.08  E-value=0.13  Score=47.26  Aligned_cols=51  Identities=6%  Similarity=0.036  Sum_probs=28.4

Q ss_pred             eeEEEecCCC-----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          183 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       183 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      .+.+.|+.++     .+..||..+.++...............+..   ++.+.+.|+.+
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~  408 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRT  408 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCC
Confidence            7778888654     478899887764322222211111111221   67788888765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.92  E-value=0.004  Score=35.04  Aligned_cols=32  Identities=25%  Similarity=0.596  Sum_probs=28.8

Q ss_pred             cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      ....|.+++|+| ...++|.++.+|.|.+|.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            345699999999 99999999999999999984

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.82  E-value=0.063  Score=47.53  Aligned_cols=122  Identities=14%  Similarity=0.288  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEEccCC---CeeEEEecCCCeEEEEEccCCC---CceeEEee-cc----CCCeeEEEecCCCCCeEEEeeC
Q 016547          167 GHEDTVEDVTFCPSS---AQEFCSVGDDSCLILWDARVGT---SPVIKVEK-AH----DADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~-~~----~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                      +.-+.|.++.|.|-+   .-.+++.-....|.+|.+.-..   ........ ..    .--....-|+| ....|++-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            344679999999863   1235555677899999886221   11111111 11    11224567999 7888887777


Q ss_pred             CCeEEEEEeccCCCCCCCCce-EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      ...-.+++.+..     ...+ ..++ ..+-|.|.+|.+||++|+++.+..=.-++||-..
T Consensus       133 ~dvSV~~sV~~d-----~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  133 RDVSVLPSVHCD-----SSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CceeEeeeeeeC-----CceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            666567777753     2333 3343 5678999999999999877666555677887544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.80  E-value=0.14  Score=47.11  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=56.9

Q ss_pred             CeeEEEecCC------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe-----EEEEEeccCCCC
Q 016547          182 AQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-----VRMFDRRNLTSN  250 (387)
Q Consensus       182 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~  250 (387)
                      +.+.++|+.+      ..+..||..+..+........-.... .++.-  ++.+.+.|+.|+.     |..||..+.+  
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~--  502 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ--  502 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE--CCEEEEECCccCCCccceEEEEcCCCCc--
Confidence            3778888855      35778998887754333322211111 23332  6888899988873     6778877633  


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCe-----EEEEeCCC
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEK  295 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~-----i~vwd~~~  295 (387)
                        +..+.........+-...   .+..+++.|+.||.     |..||...
T Consensus       503 --W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  503 --WTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             --eeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCC
Confidence              344433332222222222   23346788887764     44554443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.70  E-value=0.25  Score=40.19  Aligned_cols=118  Identities=13%  Similarity=0.106  Sum_probs=68.3

Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEE-ccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEEec
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWD-ARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR  245 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d~~  245 (387)
                      .+..-.|.+++ ...+....+...+++. ...+....... ...-...|+.+.++| ++..++.-.   .++.|.+--+.
T Consensus        67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence            56777899997 6666655566666663 33333211211 111122899999999 998887766   34677776554


Q ss_pred             cCCCC---CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEE
Q 016547          246 NLTSN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI  290 (387)
Q Consensus       246 ~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~v  290 (387)
                      .....   ....++.........+..++|.+++..+++....++.+..
T Consensus       145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            32221   1112222222335678999999999855444444554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.0093  Score=56.07  Aligned_cols=101  Identities=20%  Similarity=0.307  Sum_probs=73.5

Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ..++.|+..|.+...|+...-.+ ...-..-.++|++++|+. ++..++.|-.+|.|.+||+..      +++++.+..|
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~  171 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH  171 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence            56888999999999998764322 222234567999999999 999999999999999999998      7888888766


Q ss_pred             cceEEEE---EEcCCCCeeEEEecCCCeEEEEeCC
Q 016547          263 SAAVLCV---QWSPDKSSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       263 ~~~i~~~---~~~~~~~~ll~s~~~d~~i~vwd~~  294 (387)
                      ..+.+++   .+..++. .+.++...|.  +|.+.
T Consensus       172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            5554443   4444555 3457766665  55543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.61  E-value=0.28  Score=39.51  Aligned_cols=209  Identities=13%  Similarity=0.196  Sum_probs=116.1

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCc-EEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC-
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-  108 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-  108 (387)
                      ...-..|+|+|..+.-++.+-.-|+ ..++|..+.........    ...+.+.+|.       .|||||.+|...-.| 
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----~~~RHfyGHG-------vfs~dG~~LYATEndf  135 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----QEGRHFYGHG-------VFSPDGRLLYATENDF  135 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----ccCceeeccc-------ccCCCCcEEEeecCCC
Confidence            3444568888877777887776665 45888887732221110    1122233442       589999999875433 


Q ss_pred             ----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          109 ----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       109 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                          |.|-|||.+.+                                       ...+..+..|.-.-..+.|.+|| ..
T Consensus       136 d~~rGViGvYd~r~~---------------------------------------fqrvgE~~t~GiGpHev~lm~DG-rt  175 (366)
T COG3490         136 DPNRGVIGVYDAREG---------------------------------------FQRVGEFSTHGIGPHEVTLMADG-RT  175 (366)
T ss_pred             CCCCceEEEEecccc---------------------------------------cceecccccCCcCcceeEEecCC-cE
Confidence                78999998743                                       12224455666666788999999 55


Q ss_pred             EEEecC------------------CCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCCCe----EE
Q 016547          185 FCSVGD------------------DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNS----VR  240 (387)
Q Consensus       185 l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~----i~  240 (387)
                      ++.+..                  .-.+.+.|..+++......+.  .+.-.|..++..+ ++..++.+-..|.    --
T Consensus       176 lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~pp  254 (366)
T COG3490         176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPP  254 (366)
T ss_pred             EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCc
Confidence            555421                  112223333333311111222  3444567777776 6655544433221    00


Q ss_pred             EEEeccCCCCCCCCceEEec-------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          241 MFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +.-....     ++++.-+.       .....|-+++.+.+...+.+++-..+..-+||..++
T Consensus       255 Lvg~~~~-----g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         255 LVGHFRK-----GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             ceeeccC-----CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence            1111110     33333222       123457788888777766666667778899999986

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.54  E-value=0.011  Score=32.09  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=28.4

Q ss_pred             CcEEEEEecCCCC--cEEEEecCCCcEEEEeccCC
Q 016547           32 GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQ   64 (387)
Q Consensus        32 ~~v~~i~~~~~~~--~~l~t~~~dg~v~iwd~~~~   64 (387)
                      |.|++++|+|..+  ++|+..-.-|.|.|+|+.+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            5789999998666  79998888899999999854

It contains a characteristic DLL sequence motif.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.54  E-value=0.65  Score=42.90  Aligned_cols=111  Identities=10%  Similarity=0.117  Sum_probs=61.6

Q ss_pred             eEEEEEccCCCeeEEEecC------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547          172 VEDVTFCPSSAQEFCSVGD------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  239 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  239 (387)
                      .+.-.|+|+| ..+.+...            .+.+.+.+++.++.  ..   .....|..+.|+| +|..++... +|.|
T Consensus       399 ~t~PsWspDG-~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~--~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v  470 (591)
T PRK13616        399 LTRPSWSLDA-DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV--AS---RVPGPISELQLSR-DGVRAAMII-GGKV  470 (591)
T ss_pred             CCCceECCCC-CceEEEecCcceEEEeccCCCceEEEEeccCchh--hh---ccCCCcCeEEECC-CCCEEEEEE-CCEE
Confidence            6677888887 33443322            23344444444331  11   2356799999999 999888766 5777


Q ss_pred             EEEEeccCCCCCCCC-ce---EEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          240 RMFDRRNLTSNGVGS-PI---NKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~-~~---~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .+=-+.....   +. .+   ..+ ......+.++.|.+++. |+ .+..++.-.+|.+.-
T Consensus       471 ~Va~Vvr~~~---G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        471 YLAVVEQTED---GQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             EEEEEEeCCC---CceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEec
Confidence            6632222111   22 11   112 22334468899999998 44 444445455565554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.41  E-value=0.89  Score=42.97  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccccc--CCCCCCCe------EEEeccCCCceEEEEECCC---C
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL--GATNSRPD------LILTGHQDNAEFALAMCPT---E   99 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~------~~~~~h~~~~v~~~~~~~~---~   99 (387)
                      .-.|..|..+| +|.+||..|..| |.|-.+...-.....+  +.....+.      ..+..+....|..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            45788999999 899998888865 5555553210000000  00000111      1122233447889999996   5


Q ss_pred             CEEEEecCCCeEEEEEcCCCc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHI  120 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~  120 (387)
                      ..|+.-..|+++|+||+.+..
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCC
Confidence            788888889999999997653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=96.36  E-value=0.49  Score=43.55  Aligned_cols=103  Identities=6%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             eeEEEecCC------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC--------eEEEEEeccCC
Q 016547          183 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------SVRMFDRRNLT  248 (387)
Q Consensus       183 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~  248 (387)
                      .+++.|+.+      ..+..||..+.++............ .++...  ++.+++.|+.++        .+..||..+.+
T Consensus       391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            677777632      4588999887764332222111111 122222  566777776432        37888877632


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  295 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~  295 (387)
                          +..+..+.........+.+  +++ +++.|+.+     ..+.+||..+
T Consensus       468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence                2222222111111112222  444 66677654     4677887765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.42  Score=38.73  Aligned_cols=177  Identities=14%  Similarity=0.176  Sum_probs=100.0

Q ss_pred             cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547          166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~  244 (387)
                      .+-...+.++.|+|+. +.|++..+...-.++=-..++  .+...+. .-+....|.+.. ++++.++--.++.+.++.+
T Consensus        82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEE
Confidence            3445569999999998 566666666666666555565  3444321 223445677776 7777777777889988887


Q ss_pred             ccCCCCCCC-CceEEe---ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          245 RNLTSNGVG-SPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       245 ~~~~~~~~~-~~~~~~---~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      ......... .....+   ...+.....++|.|..+.++ .+-+-.-+.||.+..............  + ....  .-.
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~--~-~~~~--~~f  231 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLD--P-TADR--DLF  231 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccC--c-cccc--ceE
Confidence            753110000 001111   11255678999999988766 555666688887774322211100000  0 0000  001


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      -..|.++.|++..+.|++-+       ..++.+.-.|..
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS-------~ESr~l~Evd~~  263 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLS-------DESRRLLEVDLS  263 (316)
T ss_pred             eeccccceecCCCCcEEEEe-------cCCceEEEEecC
Confidence            23578888988777666533       233666666665

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.36  E-value=0.62  Score=40.63  Aligned_cols=77  Identities=13%  Similarity=0.185  Sum_probs=51.1

Q ss_pred             cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE----EEEEEcCC--------------
Q 016547          213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV----LCVQWSPD--------------  274 (387)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~--------------  274 (387)
                      ....+.+++.+| .+++.|+...=|.|.++|+..      +..++.+++..+.=    ....-...              
T Consensus       306 ~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  306 SKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             CCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            344578899999 888888887779999999998      77777776654321    11110000              


Q ss_pred             CCeeEEEecCCCeEEEEeCCCC
Q 016547          275 KSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       275 ~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ..+|++=.-.-|.|.||.++.+
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQG  400 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCC
Confidence            1224444556788889988875

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.35  E-value=0.33  Score=37.89  Aligned_cols=140  Identities=14%  Similarity=0.163  Sum_probs=82.7

Q ss_pred             CCeeEEEecCCCCCeEEEeeCC---------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547          215 ADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  285 (387)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d  285 (387)
                      ...+.-..+| +|++++-.-.|         |.++.|-..        ..+..+...-.--+.++|+.+.+.+...-+.+
T Consensus       109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--------HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             cccccCccCC-CCceeeeeeccccccccccccEEEEeccC--------CCceeeehhccCCccccccccCcEEEEEccCc
Confidence            4456667788 88885433222         333433322        12222222223346789998888777788888


Q ss_pred             CeEEEEeCCCCCceeccCCCCCCCCceeeeeecc----CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      -.|.-||..-..-..        ..+..++.+..    .....-.++...+|...+++.+        .++|...|..  
T Consensus       180 ~~V~a~dyd~~tG~~--------snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--------g~~V~~~dp~--  241 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDL--------SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--------GGTVQKVDPT--  241 (310)
T ss_pred             eEEeeeecCCCcccc--------cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--------CcEEEEECCC--
Confidence            888888844321111        11122333322    1112345555666665553332        3899999998  


Q ss_pred             cccccchhhhhhhccCceEEEeee
Q 016547          362 IYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                          +|+.+.++.-....|++++|
T Consensus       242 ----tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  242 ----TGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             ----CCcEEEEEEcCCCceEEEEe
Confidence                89999999988999999998

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.33  E-value=0.35  Score=44.38  Aligned_cols=122  Identities=11%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEc--CCCCeeEEEecCCCeEEEEe
Q 016547          216 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~ll~s~~~d~~i~vwd  292 (387)
                      .+.-+.-+. -+...++-+....+.|||.+.      +....+-. ...+.|.++.|.  |+++.+++.| ....|.+|-
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~------~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRS------GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYT  102 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCC------cEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEE
Confidence            344444444 444444444456799999987      44322222 346789999884  6888877555 577888875


Q ss_pred             CCCCCceeccCCCCCCCCceeeeeeccCC-CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          293 YEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      -....-..    ..+.+.+-.......|+ .+|.+..|.++|..+++++          +.+.|++-.
T Consensus       103 Q~R~dy~~----~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG----------Nqlfv~dk~  156 (631)
T PF12234_consen  103 QLRYDYTN----KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG----------NQLFVFDKW  156 (631)
T ss_pred             ccchhhhc----CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC----------CEEEEECCC
Confidence            43211111    11111111122233444 5899999999887555332          688888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.29  E-value=0.47  Score=38.63  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=87.3

Q ss_pred             CeEEEEEccCCCeeEEEe--cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE-eccC
Q 016547          171 TVEDVTFCPSSAQEFCSV--GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNL  247 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d-~~~~  247 (387)
                      .+...++++++....+..  .....+.++......   ....  ....+..-.|++ ++...+....+...+++. ....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc---eeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCC
Confidence            688899999995444444  233445555443322   1222  234788889999 777777766666666664 2221


Q ss_pred             CCCCCCCceEEeccc--cceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          248 TSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                      .    ... ......  ...|..+.+||||..+.+..  ..++.|.+--+.....-..   .   ...............
T Consensus        99 ~----~~~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~---~---~l~~~~~~~~~~~~~  167 (253)
T PF10647_consen   99 T----GEP-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP---R---RLTGPRRVAPPLLSD  167 (253)
T ss_pred             c----cee-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc---c---eeccceEecccccCc
Confidence            0    111 222211  12899999999999865554  3357777776654322100   0   000112222233568


Q ss_pred             eeEEEEccCCCeEEEEe
Q 016547          324 VVDFHWNASDPWTVVSV  340 (387)
Q Consensus       324 v~~~~~~~~~~~l~~s~  340 (387)
                      +++++|.+++..++++.
T Consensus       168 v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  168 VTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ceeeeecCCCEEEEEeC
Confidence            89999999887666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.28  E-value=0.54  Score=39.13  Aligned_cols=157  Identities=12%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      +-.+.+..+..++ ++++++++..-....-||-...             .-....-.....|..|.|.|++...+.+ ..
T Consensus       142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-------------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G  206 (302)
T PF14870_consen  142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-------------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG  206 (302)
T ss_dssp             S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-------------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred             CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCc-------------cceEEccCccceehhceecCCCCEEEEe-CC
Confidence            3457788888777 8899988866555567775432             1112222233479999999998876654 78


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.|++=+..........                                   .+.......-.+..++|.+++ ...++|
T Consensus       207 g~~~~s~~~~~~~~w~~-----------------------------------~~~~~~~~~~~~ld~a~~~~~-~~wa~g  250 (302)
T PF14870_consen  207 GQIQFSDDPDDGETWSE-----------------------------------PIIPIKTNGYGILDLAYRPPN-EIWAVG  250 (302)
T ss_dssp             TEEEEEE-TTEEEEE--------------------------------------B-TTSS--S-EEEEEESSSS--EEEEE
T ss_pred             cEEEEccCCCCcccccc-----------------------------------ccCCcccCceeeEEEEecCCC-CEEEEe
Confidence            88888772211000000                                   001111123358899999887 666666


Q ss_pred             cCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      +. |.+ +...+.++  .....   ..-...++.|.|.+ ..+-++. +.+|.|.-|
T Consensus       251 g~-G~l-~~S~DgGk--tW~~~~~~~~~~~n~~~i~f~~-~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  251 GS-GTL-LVSTDGGK--TWQKDRVGENVPSNLYRIVFVN-PDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             ST-T-E-EEESSTTS--S-EE-GGGTTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred             CC-ccE-EEeCCCCc--cceECccccCCCCceEEEEEcC-CCceEEE-CCCcEEEEe
Confidence            54 433 33344444  12222   23356788999986 4444444 578876544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.24  E-value=0.11  Score=46.10  Aligned_cols=152  Identities=13%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             eeeeeccee--eccccccCcceeeeeeecCCCcEEEEEecCC----CCcEEEEecCCCcEEEEeccCCCCcccccCCCCC
Q 016547            3 LWTFAMLLF--QFNEEARSPFVKKHKTIIHPGEVNRIRELPQ----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS   76 (387)
Q Consensus         3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~   76 (387)
                      .|.....+.  ...-...++.+---..+|.-..|..+.|.|.    ...+||.-. ...|.||.+.......       .
T Consensus        26 aWTDGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~-------~   97 (671)
T PF15390_consen   26 AWTDGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTER-------N   97 (671)
T ss_pred             EecCCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCcccc-------c
Confidence            455554443  2222333444444455667777999999994    345676654 5689999987431111       0


Q ss_pred             CCeEEEeccCCC--c--eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCC
Q 016547           77 RPDLILTGHQDN--A--EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK  152 (387)
Q Consensus        77 ~~~~~~~~h~~~--~--v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (387)
                      +.+.....+-..  +  -..+.|+|....|+.-.....-.++++.......                             
T Consensus        98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV-----------------------------  148 (671)
T PF15390_consen   98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV-----------------------------  148 (671)
T ss_pred             cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE-----------------------------
Confidence            111111111100  0  1256799988877765544444455554211100                             


Q ss_pred             CCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccC
Q 016547          153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV  201 (387)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  201 (387)
                               ...+ ...+.|.|.+|.+||.+++++.+..=.-++||-..
T Consensus       149 ---------kaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  149 ---------KADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ---------EEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence                     0112 33578999999999977776666666678898543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=0.16  Score=48.61  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=92.2

Q ss_pred             CeEEEEEccCCCe-eEEEecCCCeEEEEEccCCCCce---eEEee------ccCCCeeEEEecCCCCCeEEEeeCCCeEE
Q 016547          171 TVEDVTFCPSSAQ-EFCSVGDDSCLILWDARVGTSPV---IKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVR  240 (387)
Q Consensus       171 ~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  240 (387)
                      ++..+...+|... .++..+++-.|..||+++-....   ...+.      .......++.|+|.-....++...|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555566666422 23333444578999998643111   11111      12234567889986667778888999999


Q ss_pred             EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      +..+...     ...+..+. .....++++|+|.|+.+ +.|-..|++.-|...-..+.....+      +  .    .-
T Consensus       182 V~~~~~~-----~~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~leik~~ip~P------p--~----~e  242 (1405)
T KOG3630|consen  182 VKSTKQL-----AQNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSLEIKSEIPEP------P--V----EE  242 (1405)
T ss_pred             hhhhhhh-----hhhhcccC-cccceeeEEecccccee-eEecCCCeEEEeecccceeecccCC------C--c----CC
Confidence            9877652     22223333 45678999999999975 5898999998887654322111000      0  0    01


Q ss_pred             CCCeeEEEEccCCCeEEEEe
Q 016547          321 RDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ...|.++.|-....++++-+
T Consensus       243 ~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  243 NYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             CcceeEEEEecceeEEEEec
Confidence            45789999988777766543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.10  E-value=0.61  Score=43.33  Aligned_cols=185  Identities=10%  Similarity=0.099  Sum_probs=101.7

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCccc------ccCCCCC--CCeEEE----eccCCCceEEEEECC-
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA------VLGATNS--RPDLIL----TGHQDNAEFALAMCP-   97 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~------~~~~~~~--~~~~~~----~~h~~~~v~~~~~~~-   97 (387)
                      .+..+++.    ..++++++. .+.|.||+.+.......      +......  ......    ..|   .|+-|.... 
T Consensus        40 KNNLtals----q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PH---tIN~i~v~~l  111 (717)
T PF08728_consen   40 KNNLTALS----QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPH---TINFIKVGDL  111 (717)
T ss_pred             ccceeEEe----cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCc---eeeEEEeccc
Confidence            34445553    156676655 57899999876544221      0000000  000001    223   255554443 


Q ss_pred             -CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 -TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 -~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                       +...|+.|..||.|.+|.+++-..........                 .+..   ......++...+.. ...+++++
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~-----------------~~~~---~~r~~i~P~f~~~v-~~SaWGLd  170 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSED-----------------NDSG---FSRLKIKPFFHLRV-GASAWGLD  170 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccc-----------------cccc---cccccCCCCeEeec-CCceeEEE
Confidence             45578899999999999886421110000000                 0000   00011222233332 34789999


Q ss_pred             Ec--cCCCeeEEEecCCCeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCC--CC---eEEEeeCCCeEEEEEec
Q 016547          177 FC--PSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLD--DN---LILTGSADNSVRMFDRR  245 (387)
Q Consensus       177 ~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~i~~~d~~  245 (387)
                      ++  ... +++|++++...|.||-....... .......+...|.+|+|-+.+  +.   .+++++-.|.+-+|++.
T Consensus       171 Ih~~~~~-rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  171 IHDYKKS-RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCcc-eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            98  665 78888888888888866542211 111122467789999997732  22   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.83  Score=39.51  Aligned_cols=147  Identities=10%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEE
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  114 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vw  114 (387)
                      +.+-|...+..++|+  ..|.+.=|-+....          ......+..-..++|.++.|++|.+.||.--.|++|.+.
T Consensus        26 ngvFfDDaNkqlfav--rSggatgvvvkgpn----------dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~   93 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV--RSGGATGVVVKGPN----------DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFC   93 (657)
T ss_pred             cceeeccCcceEEEE--ecCCeeEEEEeCCC----------CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEE
Confidence            344444333333333  34556777766541          122233444444589999999999999999999999999


Q ss_pred             EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeE
Q 016547          115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL  194 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  194 (387)
                      +......                                    ........+..+..|.+..|+..-  -++..... -+
T Consensus        94 nf~~d~~------------------------------------~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~-G~  134 (657)
T KOG2377|consen   94 NFIPDNS------------------------------------QLEYTQECKTKNANILGFCWTSST--EIAFITDQ-GI  134 (657)
T ss_pred             ecCCCch------------------------------------hhHHHHHhccCcceeEEEEEecCe--eEEEEecC-Ce
Confidence            9842111                                    011112223345668999998664  34444433 35


Q ss_pred             EEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547          195 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  234 (387)
Q Consensus       195 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (387)
                      -+|-+...+. .++..+.|...|+--.|.+ +.+.++.++
T Consensus       135 e~y~v~pekr-slRlVks~~~nvnWy~yc~-et~v~LL~t  172 (657)
T KOG2377|consen  135 EFYQVLPEKR-SLRLVKSHNLNVNWYMYCP-ETAVILLST  172 (657)
T ss_pred             EEEEEchhhh-hhhhhhhcccCccEEEEcc-ccceEeeec
Confidence            6665544432 3455667888888889988 555444433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.08  E-value=0.11  Score=41.66  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             eEEEEEccCCCeeEEEecCCCe-EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEec
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRR  245 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~  245 (387)
                      ...++++|..+.-++.+-.-|+ ..++|....+.+..........-.-.-.|+| ++.+|...-.|     |.|-+||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence            3467888877666666666665 5688888777543332221111112236899 99998876544     789999999


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEE
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG  280 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~  280 (387)
                      ..     .+.+.++..|.-....+.+.+||+.+++
T Consensus       149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlvv  178 (366)
T COG3490         149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLVV  178 (366)
T ss_pred             cc-----cceecccccCCcCcceeEEecCCcEEEE
Confidence            63     5778889989888899999999996543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.01  E-value=0.77  Score=38.49  Aligned_cols=105  Identities=13%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeec----------cCCCeeEEEecCCCCCeEEEeeC--------CC--eEEEEEe
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSA--------DN--SVRMFDR  244 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~--------dg--~i~~~d~  244 (387)
                      ++--+.+|.|+--|+.............          ..+.-.-+++++ ..+.|.+--.        |+  .|-++|+
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            4445677888887776654222222211          012233467776 4433333221        22  4666777


Q ss_pred             ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeE-EEecCCCeEEEEeCCCCC
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll-~s~~~d~~i~vwd~~~~~  297 (387)
                      .+      .+.+..+.. +.++.+|+.+.+.+-+| +....++.+.+||..+++
T Consensus       277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            77      788888873 45688999998876444 445568999999999863

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.82  Score=37.13  Aligned_cols=143  Identities=16%  Similarity=0.070  Sum_probs=91.0

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  249 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  249 (387)
                      +-+..+.++.   ++...+..+.-+++.|+.+...|....+....+--.++..   .|++..++..|.-..+.|+.+++.
T Consensus        87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCC
Confidence            4466777774   4566677788899999999887766655544444445554   688999988777788899988643


Q ss_pred             CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547          250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  329 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (387)
                         .............-..++.|.+-  -+ .+..|+-+.+-|+.....+            .++.. ......+.++..
T Consensus       161 ---P~lagrya~~~~d~~~v~ISGn~--AY-vA~~d~GL~ivDVSnp~sP------------vli~~-~n~g~g~~sv~v  221 (370)
T COG5276         161 ---PQLAGRYALPGGDTHDVAISGNY--AY-VAWRDGGLTIVDVSNPHSP------------VLIGS-YNTGPGTYSVSV  221 (370)
T ss_pred             ---ceeeeeeccCCCCceeEEEecCe--EE-EEEeCCCeEEEEccCCCCC------------eEEEE-EecCCceEEEEe
Confidence               22223333333434567776553  33 4556888999999986544            22222 222336777777


Q ss_pred             ccCCCeEE
Q 016547          330 NASDPWTV  337 (387)
Q Consensus       330 ~~~~~~l~  337 (387)
                      +++..+++
T Consensus       222 sdnr~y~v  229 (370)
T COG5276         222 SDNRAYLV  229 (370)
T ss_pred             cCCeeEEE
Confidence            77655544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.78  E-value=0.25  Score=37.50  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCC-----CeeEEEecCCCeEEEEEcc
Q 016547          170 DTVEDVTFCPSS-----AQEFCSVGDDSCLILWDAR  200 (387)
Q Consensus       170 ~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~  200 (387)
                      ..+..++|+|.|     +.+|++.+.++.|.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            378999999954     4678899999999999765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.73  E-value=0.19  Score=43.22  Aligned_cols=169  Identities=12%  Similarity=0.076  Sum_probs=94.2

Q ss_pred             eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCC----Cee-EEEecCCCCCeEEEeeCCC
Q 016547          163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLH-CVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~i~-~~~~~~~~~~~l~~~~~dg  237 (387)
                      ..+..-...+..+-..|++ +.+..-+. ..+.++++.+......+......+    .|+ ++..-. .+.-+++++.||
T Consensus       214 ~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG  290 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDG  290 (733)
T ss_pred             hhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCC
Confidence            3344455678888899999 55555443 678888887654222211111111    122 222223 577788888998


Q ss_pred             eEEEE-EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547          238 SVRMF-DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  316 (387)
Q Consensus       238 ~i~~~-d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  316 (387)
                      -|.-| |.+.... +....++.++-....+..+.-. +.+.-|++-+.+|.+.++.-.....              ++. 
T Consensus       291 ~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~--------------lL~-  353 (733)
T COG4590         291 LVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKL--------------LLF-  353 (733)
T ss_pred             ceeeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcc--------------eeh-
Confidence            87655 6664321 1122233333223344333322 2333567888888888876554211              111 


Q ss_pred             eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                       ..--..+.-+++||.+.+++.-         ..|.++++.+++.
T Consensus       354 -~~~~~~~~~~~~Sp~~~~Ll~e---------~~gki~~~~l~Nr  388 (733)
T COG4590         354 -ERAYQAPQLVAMSPNQAYLLSE---------DQGKIRLAQLENR  388 (733)
T ss_pred             -hhhhcCcceeeeCcccchheee---------cCCceEEEEecCC
Confidence             1112255678899999998842         2389999999854

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.72  E-value=0.02  Score=53.00  Aligned_cols=83  Identities=14%  Similarity=0.221  Sum_probs=46.1

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC---CCCEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLS  104 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~---~~~~l~s  104 (387)
                      .+..|.|-.++|-.-+-..++  -.-|...|||++--.-.      -............+..+.-+.|.|   +.-++..
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~------iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~  200 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE------IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICY  200 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccc------cccceEEeecCcCCCCcceeeecccccccceeee
Confidence            366788888887663333333  33478899998753110      001111112222222334444544   6667778


Q ss_pred             ecCCCeEEEEEcCC
Q 016547          105 GGKDKSVVLWSIQD  118 (387)
Q Consensus       105 ~~~d~~i~vwd~~~  118 (387)
                      +-.+++|++...+.
T Consensus       201 ~~~~~~i~lL~~~r  214 (1283)
T KOG1916|consen  201 GLKGGEIRLLNINR  214 (1283)
T ss_pred             ccCCCceeEeeech
Confidence            88889999887764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.72  E-value=0.055  Score=29.47  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=27.0

Q ss_pred             CCeEEEEEccCCC--eeEEEecCCCeEEEEEccC
Q 016547          170 DTVEDVTFCPSSA--QEFCSVGDDSCLILWDARV  201 (387)
Q Consensus       170 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~  201 (387)
                      +.|.++.|+|...  .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998764  6888888899999999995

It contains a characteristic DLL sequence motif.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.71  E-value=0.0013  Score=56.16  Aligned_cols=142  Identities=8%  Similarity=0.108  Sum_probs=99.1

Q ss_pred             EEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC
Q 016547           92 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT  171 (387)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (387)
                      ...|-+.+.-++.++.+..+..||-.......                                          ...++.
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le------------------------------------------~n~tg~   76 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILE------------------------------------------LNPTGK   76 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceecc------------------------------------------cCCchh
Confidence            56778877778888888888888865321110                                          112345


Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      ...++|..+++..++.+-..+.+.+||+.+..-..+..-..+...  -+.|++ ....++.+...|.+.+++..+     
T Consensus        77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgt-----  148 (615)
T KOG2247|consen   77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGT-----  148 (615)
T ss_pred             HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhcc-CCccccccccccceEEEeccc-----
Confidence            667888888877778888999999999987652222111122222  277898 888889999999999999987     


Q ss_pred             CCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                       .+.+.....|...++++++.+.+..  +.++.|.
T Consensus       149 -sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~  180 (615)
T KOG2247|consen  149 -SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDN  180 (615)
T ss_pred             -hhhhhhhcccccceeEEEeccccee--eecCcHH
Confidence             5555555558889999999998863  3444443

>PHA02790 Kelch-like protein; Provisional

Probab=95.63  E-value=0.85  Score=41.26  Aligned_cols=100  Identities=8%  Similarity=-0.032  Sum_probs=49.4

Q ss_pred             eeEEEecCCC---eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          183 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       183 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      .+.+.|+.++   .+..||.++.++............ .+++ .- ++.+.+.|+   .+.+||.++.+    +..+..+
T Consensus       364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~-~~~IYv~GG---~~e~ydp~~~~----W~~~~~m  433 (480)
T PHA02790        364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VF-GRRLFLVGR---NAEFYCESSNT----WTLIDDP  433 (480)
T ss_pred             EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EE-CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence            7777777553   467888877664322111111111 1222 22 566667663   56778876532    3333333


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  295 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~  295 (387)
                      .........+.+  +++ |++.|+.+     ..+..||...
T Consensus       434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence            221222222222  444 67777754     2456666654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.47  E-value=1.5  Score=38.04  Aligned_cols=109  Identities=12%  Similarity=0.162  Sum_probs=56.5

Q ss_pred             CCeEEEEEccCCCeeEEEec-----------CCC-eEEEEEccCC--CCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          170 DTVEDVTFCPSSAQEFCSVG-----------DDS-CLILWDARVG--TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                      .....|+|.++| +++++-.           ..+ .|.+++-..+  +......+.......+.+++.+ ++ +++ ++.
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence            446788999998 6555532           223 6777765432  2112233433344568899988 77 444 444


Q ss_pred             CCeEEEEEeccCCCCC-CCCce-EEecc----ccceEEEEEEcCCCCeeEEEe
Q 016547          236 DNSVRMFDRRNLTSNG-VGSPI-NKFEG----HSAAVLCVQWSPDKSSVFGSS  282 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~-~~~~~-~~~~~----~~~~i~~~~~~~~~~~ll~s~  282 (387)
                      ....++.|........ ..+.+ ..+..    +......++|.|||...++.+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4433343443211000 01112 12222    234578899999998444333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.40  E-value=0.69  Score=42.52  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=75.2

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEec--CCCCCeEEEeeCCCeEEEEEeccC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ....-+.-+.-+ +..++-+....+.|||.+.+.......+ ...+.|..+.|.  | +++.+++.+-.+.|.+|--...
T Consensus        30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccch
Confidence            344555555544 4444555566799999988773222233 457789999984  5 6788888888888888854211


Q ss_pred             ---CCCCCCCceEEec--ccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          248 ---TSNGVGSPINKFE--GHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       248 ---~~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                         ...+...++.++.  .|. .+|.+..|.++|..  +.|+ ++.+.|+|-..
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L--vV~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTL--VVGS-GNQLFVFDKWL  157 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeE--EEEe-CCEEEEECCCc
Confidence               1111244555442  333 57899999999973  3343 46788887544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=95.36  E-value=2.3  Score=39.27  Aligned_cols=61  Identities=11%  Similarity=0.063  Sum_probs=33.9

Q ss_pred             eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------CeEEEEEecc
Q 016547          183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRN  246 (387)
Q Consensus       183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~  246 (387)
                      .+++.|+.+     ..+..||..+.++........ ...-.+++..  ++.+++.|+.+      +.+..||..+
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence            677778765     347788888766432222211 1111122222  56777777742      3577888775

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.32  E-value=1.4  Score=36.51  Aligned_cols=117  Identities=5%  Similarity=0.061  Sum_probs=68.0

Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE------------eeccCCCeeEEE-ecCCCCCeEEEeeCCC
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV------------EKAHDADLHCVD-WNPLDDNLILTGSADN  237 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~i~~~~-~~~~~~~~l~~~~~dg  237 (387)
                      .|..+...|+- +.+++-+ |+.++++++..-.......            .......+...+ -....+...++.....
T Consensus        37 ~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   37 SITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             eEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            49999999887 4444443 5999999987654222110            111223344444 1121444445555666


Q ss_pred             eEEEEEeccCCCCCCC-CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          238 SVRMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .|.+|........  . +...++. ....+..++|.++   .++.|. .....+.|+.+.
T Consensus       115 ~i~i~~~~~~~~~--f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~  167 (275)
T PF00780_consen  115 KILIYEWNDPRNS--FSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTG  167 (275)
T ss_pred             EEEEEEEECCccc--ccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCC
Confidence            8999988763110  2 4556655 3477889999844   244554 445788888854

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.27  E-value=2.6  Score=39.43  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=74.1

Q ss_pred             eEEEEEccC-CCeeEEEecCCCeEEEEEccC-------C----CC-------ceeEEeeccCCCeeEEEec--CCCCCeE
Q 016547          172 VEDVTFCPS-SAQEFCSVGDDSCLILWDARV-------G----TS-------PVIKVEKAHDADLHCVDWN--PLDDNLI  230 (387)
Q Consensus       172 v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-------~----~~-------~~~~~~~~~~~~i~~~~~~--~~~~~~l  230 (387)
                      |+-|....- +...|+.|..||.|.+|.+++       .    +.       .....+ .-.....+++++  . ..+++
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-~~rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-KSRLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC-cceEE
Confidence            444443322 226888999999999997632       1    00       001111 234577889998  6 78899


Q ss_pred             EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC-----CeeEEEecCCCeEEEEeCC
Q 016547          231 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       231 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~ll~s~~~d~~i~vwd~~  294 (387)
                      |+++....|.||-.......  .....+. .+...|.+|+|-++.     ...+++++-.|.+.+|++.
T Consensus       181 AVSsNs~~VTVFaf~l~~~r--~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDER--FYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCCceEEEEEEeccccc--ccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            99988888888876642110  1111111 256678899997754     2256788889999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.19  E-value=1.6  Score=36.46  Aligned_cols=160  Identities=14%  Similarity=0.200  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      .-...+..+.-++++ .+++++.......-||.-....  ..........|..|.|.| ++.+.+++ ..|.|++=+...
T Consensus       142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TT
T ss_pred             CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccc--eEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCC
Confidence            334678888889998 7787777766677888654432  222233567899999999 77665544 888888876211


Q ss_pred             CCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                      .. ....+.+..+..-...+..++|.+++. +.|+|+ .|.+ +...+.+ +.           .+.......-...++.
T Consensus       217 ~~-~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgG-kt-----------W~~~~~~~~~~~n~~~  280 (302)
T PF14870_consen  217 DG-ETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGG-KT-----------WQKDRVGENVPSNLYR  280 (302)
T ss_dssp             EE-EEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTT-SS------------EE-GGGTTSSS---E
T ss_pred             Cc-cccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCC-cc-----------ceECccccCCCCceEE
Confidence            00 000111111222334589999999877 566665 4433 2333332 11           1111111223345788


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      +.|.++.+-++         -|.+|.|.-|
T Consensus       281 i~f~~~~~gf~---------lG~~G~ll~~  301 (302)
T PF14870_consen  281 IVFVNPDKGFV---------LGQDGVLLRY  301 (302)
T ss_dssp             EEEEETTEEEE---------E-STTEEEEE
T ss_pred             EEEcCCCceEE---------ECCCcEEEEe
Confidence            88876544333         2556777655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.98  E-value=2.2  Score=40.47  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             CCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcC-ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           86 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT-SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        86 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      ..-.|..|.++|+|++|+..|..| |.|-.+...-. ...+..       +...+...       .      ........
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~-------g~~~i~Cr-------t------~~v~~~~~  141 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFED-------GKKEINCR-------T------VPVDERFF  141 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccC-------CCcceeEE-------E------EEechhhc
Confidence            334688999999999999888654 55555532100 000000       00000000       0      00000011


Q ss_pred             ecCCCCCeEEEEEccCC--CeeEEEecCCCeEEEEEccCCCC
Q 016547          165 YNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                      ...+...|..+.|+|.+  +..|+.-..|+++++||+.....
T Consensus       142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence            12345679999999974  36788888999999999976553

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.88  E-value=0.067  Score=45.74  Aligned_cols=169  Identities=14%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      +..... .|..+-..|||+.|..-+. .++.++++.+.......-.                           +...++ 
T Consensus       216 L~~~~~-~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~---------------------------~dspg~-  265 (733)
T COG4590         216 LSVPFS-DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLV---------------------------DDSPGD-  265 (733)
T ss_pred             cCCCcc-chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhh---------------------------hcCCCc-
Confidence            444433 5788899999998776654 6888998876432111000                           000000 


Q ss_pred             ceeecCCCCCeE-EEEEccCCCeeEEEecCCCeEEEE-EccCCCCcee---EEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          162 RGIYNGHEDTVE-DVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVI---KVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       162 ~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                            ....|+ .+.... |+..++.++.||.|.-| |++....+..   +.+.-...++..+.-.. +.+-+++-+..
T Consensus       266 ------~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~  337 (733)
T COG4590         266 ------SRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRN  337 (733)
T ss_pred             ------hHHHHHHHHHHHh-CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCC
Confidence                  001111 111112 33667888888888877 6655443322   22222233444443333 45667777788


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      |++..+....      .+.+. ++..-..+.-+++||.+.+++ + -+.|.|+++.+++..
T Consensus       338 G~L~~f~st~------~~~lL-~~~~~~~~~~~~~Sp~~~~Ll-~-e~~gki~~~~l~Nr~  389 (733)
T COG4590         338 GTLQSFYSTS------EKLLL-FERAYQAPQLVAMSPNQAYLL-S-EDQGKIRLAQLENRN  389 (733)
T ss_pred             Cceeeeeccc------Cccee-hhhhhcCcceeeeCcccchhe-e-ecCCceEEEEecCCC
Confidence            8888776554      23322 222223567799999999864 3 457889999998753

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.85  E-value=0.06  Score=50.08  Aligned_cols=126  Identities=21%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             eeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-----ceeEEeeccCCCeeEEEecCC--CCCeEEEeeC
Q 016547          163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPL--DDNLILTGSA  235 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~  235 (387)
                      ...++..+.+-.++|.....-.+.  -.-|.+.+||+..-+.     ..+.....-...+.-+.|.|.  ...++..+-.
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            345677788888888432211121  3346788998865221     112223333445556666653  3456666667


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEE-----------EcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      ++.|++.....       ....-+.+|...+..++           .+|||. +||..+.||.++.|.+.-.++
T Consensus       204 ~~~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  204 GGEIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             CCceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence            88888887764       12233445665554443           578888 577888888888888765444

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=1  Score=39.00  Aligned_cols=107  Identities=9%  Similarity=0.165  Sum_probs=74.3

Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      ..++|.++.|++|+ +.+++--.++.|.+++....+..  .....+.....|....|..  ..-+|.-+..| +-+|-..
T Consensus        65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEc
Confidence            45689999999998 88999999999999998443311  1222333445688899986  35666666666 6666655


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~  283 (387)
                      ..     ...++..+.|...|+-..|.++-+.++.+.+
T Consensus       141 pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  141 PE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hh-----hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            43     4556666778888888889888775554444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.75  E-value=0.93  Score=39.84  Aligned_cols=131  Identities=13%  Similarity=0.130  Sum_probs=80.0

Q ss_pred             CCCCCCCCCceeecCCCCCeEEEEEccCCC------eeEEEecCCCeEEEEEccCCCCceeE-Eee--ccCCCeeEEEec
Q 016547          153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIK-VEK--AHDADLHCVDWN  223 (387)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~--~~~~~i~~~~~~  223 (387)
                      -.+...++.+..+..|..-  -+.|.|...      ..-++|-.+..|.-.|.+........ ...  .......+..-.
T Consensus       494 kmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT  571 (776)
T COG5167         494 KMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT  571 (776)
T ss_pred             eeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccc
Confidence            3344555556666666553  567777531      12334445556666666543311111 111  111222222222


Q ss_pred             CCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       224 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                        ...++|+++..|-|++||.-.      ......+.+....|..+..+.+|.++||+|  ...+.+-|++-
T Consensus       572 --esGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i  633 (776)
T COG5167         572 --ESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI  633 (776)
T ss_pred             --cCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence              467999999999999999764      344455667788899999999999998877  56788888764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.52  E-value=4.7  Score=38.76  Aligned_cols=79  Identities=14%  Similarity=0.046  Sum_probs=47.0

Q ss_pred             CCCcEEEEEecCC--CCc---EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec--cCCCceEEEEECCCCCEE
Q 016547           30 HPGEVNRIRELPQ--NTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        30 h~~~v~~i~~~~~--~~~---~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~v~~~~~~~~~~~l  102 (387)
                      -..+|.|+.++|-  +.+   +++.|..+..+.+--........         ....+.+  -+. .|.-.++-.|..+|
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~---------~~~~l~~~~iPR-SIl~~~~e~d~~yL  598 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI---------THEQLSGEIIPR-SILLTTFEGDIHYL  598 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee---------eeeccCCCccch-heeeEEeeccceEE
Confidence            4678999999973  333   88999877666554332221000         0000111  111 24455666678899


Q ss_pred             EEecCCCeEEEEEcCC
Q 016547          103 LSGGKDKSVVLWSIQD  118 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~  118 (387)
                      +++..||.+.-+.++.
T Consensus       599 lvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  599 LVALGDGALLYFVLDI  614 (1096)
T ss_pred             EEEcCCceEEEEEEEc
Confidence            9999999988776654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.52  E-value=2.1  Score=34.65  Aligned_cols=196  Identities=8%  Similarity=0.044  Sum_probs=103.0

Q ss_pred             eeeeeeecCCCcE--EEEEecCCCCcEEEEecCCC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           22 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        22 ~~~~~~~~h~~~v--~~i~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      .+....+.|....  ..+.|.. ++.++-+.+.-|  .|+.+|+.+++            ......-...-.=-.++...
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~------------~~~~~~l~~~~FgEGit~~~   99 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGK------------VLQSVPLPPRYFGEGITILG   99 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSS------------EEEEEE-TTT--EEEEEEET
T ss_pred             eEEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCc------------EEEEEECCccccceeEEEEC
Confidence            4566777786554  4677756 677777776655  78999999983            22222211111112344432


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      + +...-.=.++...+||.++.+..                                        ..+. ....-+.++ 
T Consensus       100 d-~l~qLTWk~~~~f~yd~~tl~~~----------------------------------------~~~~-y~~EGWGLt-  136 (264)
T PF05096_consen  100 D-KLYQLTWKEGTGFVYDPNTLKKI----------------------------------------GTFP-YPGEGWGLT-  136 (264)
T ss_dssp             T-EEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEE--SSS--EEE-
T ss_pred             C-EEEEEEecCCeEEEEccccceEE----------------------------------------EEEe-cCCcceEEE-
Confidence            2 22223346789999998753222                                        2221 123456666 


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                       .++ ..|+.......++++|..+.+...........   ..++-+.|.  +|...|=.=....|...|..+      ++
T Consensus       137 -~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t------G~  206 (264)
T PF05096_consen  137 -SDG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET------GK  206 (264)
T ss_dssp             -ECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-------B
T ss_pred             -cCC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC------Ce
Confidence             455 34555555678999998876522111122222   234556665  355555444455566666666      55


Q ss_pred             ceEEec---------------cccceEEEEEEcCCCCeeEEEec
Q 016547          255 PINKFE---------------GHSAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       255 ~~~~~~---------------~~~~~i~~~~~~~~~~~ll~s~~  283 (387)
                      .+..+.               ....-.+.||+.|....++++|-
T Consensus       207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            544431               01356899999999888888884

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=94.51  E-value=4.6  Score=38.52  Aligned_cols=115  Identities=8%  Similarity=0.029  Sum_probs=63.5

Q ss_pred             ceEEEEECCCCCEEEEecC-----CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547           89 AEFALAMCPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  163 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (387)
                      .+..+.|+|||++|+.+..     .-.|++-|+.++....                                       .
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~---------------------------------------~  168 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP---------------------------------------E  168 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC---------------------------------------c
Confidence            4677899999998875432     2357777876542110                                       0


Q ss_pred             eecCCCCCeEEEEEccCCCeeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCee-EEEecCCCCCeEEEeeC--
Q 016547          164 IYNGHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSA--  235 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~--  235 (387)
                      .+.. . . ..++|.+++..++.+...+     ..|..+++.+........+........ .+..+. ++.+++..+.  
T Consensus       169 ~i~~-~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~  244 (686)
T PRK10115        169 LLDN-V-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASA  244 (686)
T ss_pred             cccC-c-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECC
Confidence            1111 1 1 4589999985555554322     467888888773222233332222232 223333 6666555444  


Q ss_pred             -CCeEEEEEecc
Q 016547          236 -DNSVRMFDRRN  246 (387)
Q Consensus       236 -dg~i~~~d~~~  246 (387)
                       ++.+.+++...
T Consensus       245 ~~~~~~l~~~~~  256 (686)
T PRK10115        245 TTSEVLLLDAEL  256 (686)
T ss_pred             ccccEEEEECcC
Confidence             35788888543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.48  E-value=3.7  Score=37.34  Aligned_cols=30  Identities=37%  Similarity=0.634  Sum_probs=25.3

Q ss_pred             CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      .+..+++++.||.++.+|.++      ++.+-+.+.
T Consensus       405 ~g~~v~~g~~dG~l~ald~~t------G~~lW~~~~  434 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATT------GKELWKFRT  434 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCC------CceeeEEEC
Confidence            467888889999999999999      888877663

The alignment model contains an 8-bladed beta-propeller.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.45  E-value=1.2  Score=38.84  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=56.1

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-----
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-----   98 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-----   98 (387)
                      ...+......+.+|..+| ++++.|+...=|.|.++|+.++            ..++.++|..+..+.=+.....     
T Consensus       300 r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~------------~vvrmWKGYRdAqc~wi~~~~~~~~~~  366 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARG------------IVVRMWKGYRDAQCGWIEVPEEGDRDR  366 (415)
T ss_pred             EEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------hhhhhhccCccceEEEEEeeccccccc
Confidence            334445667799999999 7888888877899999999998            6666677766632211111111     


Q ss_pred             ------------CCE-EEEecCCCeEEEEEcCCCc
Q 016547           99 ------------EPY-VLSGGKDKSVVLWSIQDHI  120 (387)
Q Consensus        99 ------------~~~-l~s~~~d~~i~vwd~~~~~  120 (387)
                                  ..+ ++-+-.-|.|.||.++.+.
T Consensus       367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             ccccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence                        112 3346678889999987653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.40  E-value=2.9  Score=37.01  Aligned_cols=140  Identities=18%  Similarity=0.211  Sum_probs=83.7

Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-------CCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-------DDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      ++..|+....++-.|++.++  .+.....|...  -+.|.|.       +.+.| +|-.+..|.-.|.|..     +..+
T Consensus       482 i~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~-----gNKi  551 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRAR-----GNKI  551 (776)
T ss_pred             EEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEeccccc-----CCce
Confidence            34455556667777777777  55566555544  5666662       12333 4445555555576653     3233


Q ss_pred             EEeccc----cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          257 NKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       257 ~~~~~~----~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                      ..-+..    ....++..-..+| + +|.++..|-|++||--...               ....+.+-...|..+..+.+
T Consensus       552 ~v~esKdY~tKn~Fss~~tTesG-y-Ia~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~idvta~  614 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTESG-Y-IAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHIDVTAN  614 (776)
T ss_pred             eeeeehhccccccccccccccCc-e-EEEecCCCceeeehhhcch---------------hhhcCcccccceeeeEeecC
Confidence            222210    1122233333344 3 6799999999999965421               12234566778999999999


Q ss_pred             CCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          333 DPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      |.+++++|-         ..+.+-|+.
T Consensus       615 Gk~ilaTCk---------~yllL~d~~  632 (776)
T COG5167         615 GKHILATCK---------NYLLLTDVP  632 (776)
T ss_pred             CcEEEEeec---------ceEEEEecc
Confidence            999999886         567777665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.31  E-value=3.3  Score=36.04  Aligned_cols=62  Identities=10%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             CCeEEEEEccCCCeeEEEecC-------------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE
Q 016547          170 DTVEDVTFCPSSAQEFCSVGD-------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI  230 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (387)
                      .....++|.|+| .+.++-+.                   .|.|.-+|....+   ...+.........++|+| +++++
T Consensus       124 ~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~rnp~Gl~~d~-~G~l~  198 (367)
T TIGR02604       124 HSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK---LRVVAHGFQNPYGHSVDS-WGDVF  198 (367)
T ss_pred             ccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe---EEEEecCcCCCccceECC-CCCEE
Confidence            446788999998 55554331                   1445555555444   222222234467899999 88887


Q ss_pred             EEeeCC
Q 016547          231 LTGSAD  236 (387)
Q Consensus       231 ~~~~~d  236 (387)
                      ++-..+
T Consensus       199 ~tdn~~  204 (367)
T TIGR02604       199 FCDNDD  204 (367)
T ss_pred             EEccCC
Confidence            764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=93.59  E-value=5.5  Score=36.15  Aligned_cols=63  Identities=6%  Similarity=0.040  Sum_probs=34.2

Q ss_pred             CCCeeEEEecCC--CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEecc
Q 016547          180 SSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRN  246 (387)
Q Consensus       180 ~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~~  246 (387)
                      ++ .+.+.|+.+  ..+..||..+.++.....+...... .+++..  ++.+.+.|+.++   .+..||.++
T Consensus       318 ~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        318 NN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CC-EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence            44 777888754  3578888776553222222111111 122222  677888887654   466787765

>PRK10115 protease 2; Provisional

Probab=93.49  E-value=7.3  Score=37.20  Aligned_cols=71  Identities=14%  Similarity=0.063  Sum_probs=42.4

Q ss_pred             cEEEEEecCCCCcEEEEecC-CC----cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           33 EVNRIRELPQNTKIVATHTD-SP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~-dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .+..+.++| ++++|+-+.+ +|    .|++-|+.+++...           ..+.+ .   -..++|.+|++.|+....
T Consensus       128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----------~~i~~-~---~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----------ELLDN-V---EPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----------ccccC-c---ceEEEEeeCCCEEEEEEe
Confidence            366778888 7777776533 23    58888888773111           11111 1   136899999987665543


Q ss_pred             C------CeEEEEEcCCC
Q 016547          108 D------KSVVLWSIQDH  119 (387)
Q Consensus       108 d------~~i~vwd~~~~  119 (387)
                      +      ..|..+++.++
T Consensus       192 ~~~~~~~~~v~~h~lgt~  209 (686)
T PRK10115        192 HPVTLLPYQVWRHTIGTP  209 (686)
T ss_pred             cCCCCCCCEEEEEECCCC
Confidence            2      35666676654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.21  E-value=3.2  Score=32.31  Aligned_cols=106  Identities=13%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC------eEEEE-EeccCCCCCCCCce
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMF-DRRNLTSNGVGSPI  256 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~~~-d~~~~~~~~~~~~~  256 (387)
                      .|+.+...+.|.+|++.....+....+.. -+.|..+.++. .|+++++--.+.      .+|+| +.+.....  ..++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~v  105 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSPV  105 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCcE
Confidence            34444667789999999666666666654 47899999999 899999865432      45654 22221000  1111


Q ss_pred             E-----------------------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          257 N-----------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       257 ~-----------------------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .                       ++. -..++.+++-.|....|+ .|+ ++++.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence            1                       111 234567888888655565 454 678999998764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.03  E-value=0.56  Score=25.02  Aligned_cols=30  Identities=23%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             ccceEEEEEEcCCCCeeEEEecCC--CeEEEE
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAED--GLLNIW  291 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d--~~i~vw  291 (387)
                      ....-....|+|||++|+.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567889999999988777777  766665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.72  E-value=8  Score=35.57  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=18.6

Q ss_pred             eeEEEecCCCeEEEEEccCCC
Q 016547          183 QEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~  203 (387)
                      ..++.+..+|.+.+.|.++++
T Consensus       316 ~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       316 KLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             EEEEEeCCCceEEEEECCCCc
Confidence            478889999999999999887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.39  E-value=5.5  Score=32.93  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             CCCCeEEEEEccCCCeeEEEec------CCCeEEEEEccCCCCceeEEeec-----cCCCeeEEEecCCCCC-eEEEee-
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDN-LILTGS-  234 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~-~l~~~~-  234 (387)
                      -.+.|+.+.|..+. ++++.|.      ....+..||..+...   ..+..     -.++++.+.+...+.. +.+.|. 
T Consensus        35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w---~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~  110 (281)
T PF12768_consen   35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTW---SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS  110 (281)
T ss_pred             ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCee---eecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence            35689999998555 6777664      456788999887763   22222     3467888877543444 444443 


Q ss_pred             CCC--eEEEEEecc
Q 016547          235 ADN--SVRMFDRRN  246 (387)
Q Consensus       235 ~dg--~i~~~d~~~  246 (387)
                      .+|  .|..||-..
T Consensus       111 ~~g~~~l~~~dGs~  124 (281)
T PF12768_consen  111 ANGSTFLMKYDGSS  124 (281)
T ss_pred             cCCCceEEEEcCCc
Confidence            233  466666554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.34  E-value=0.62  Score=36.89  Aligned_cols=80  Identities=10%  Similarity=0.057  Sum_probs=50.4

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe----ccCCCceEEEEECCCCCEEEEecCC
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT----GHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      ++..+..   .+.+|++-+.+|.+++||+.+.+......   ...++....    ......|..+.++.+|.-+++-+ +
T Consensus        14 ~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~---Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n   86 (219)
T PF07569_consen   14 PVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPV---SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N   86 (219)
T ss_pred             ceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCc---cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C
Confidence            4444543   56778888999999999999885433210   001111000    01223588999998888777765 5


Q ss_pred             CeEEEEEcCCC
Q 016547          109 KSVVLWSIQDH  119 (387)
Q Consensus       109 ~~i~vwd~~~~  119 (387)
                      |....|+.+-+
T Consensus        87 g~~y~y~~~L~   97 (219)
T PF07569_consen   87 GDSYSYSPDLG   97 (219)
T ss_pred             CCEEEeccccc
Confidence            78888887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.29  E-value=3.5  Score=40.91  Aligned_cols=171  Identities=14%  Similarity=0.221  Sum_probs=90.2

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEe-cCC------CCCeEEEeeCCCeEEEEEe
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW-NPL------DDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-~~~------~~~~l~~~~~dg~i~~~d~  244 (387)
                      -..+-+.|.=++..+|  -|+.+.+|+.+++.  ....+.+-...|..+.. -|.      .=+++++-+.--.|.++-+
T Consensus        81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV  156 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGV  156 (1311)
T ss_pred             eeeeccchhhcceEEE--eCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEE
Confidence            3444455543243444  57899999999855  23444444555555543 220      2233344444444555544


Q ss_pred             ccCCCCCC---CCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-----------CCCC
Q 016547          245 RNLTSNGV---GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----------TNYP  310 (387)
Q Consensus       245 ~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------~~~~  310 (387)
                      .-......   .....++......|+++....+|+ +|.+| .||  .+|.+.-....--.....           ...|
T Consensus       157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP  232 (1311)
T KOG1900|consen  157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP  232 (1311)
T ss_pred             EeccccCcccccccceeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence            33211000   011123333456789999888888 66444 566  556554322211111100           0011


Q ss_pred             ceeeeeec-cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          311 AGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       311 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .  +..+. .+..+|..++.......+.        +-+..|+|++|++..
T Consensus       233 s--~~~~~~~~~dpI~qi~ID~SR~IlY--------~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  233 S--LLSVPGSSKDPIRQITIDNSRNILY--------VLSEKGTVSAYDIGG  273 (1311)
T ss_pred             h--hhcCCCCCCCcceeeEeccccceee--------eeccCceEEEEEccC
Confidence            1  22333 5677999999987666555        556669999999984

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.20  E-value=7.7  Score=34.18  Aligned_cols=157  Identities=12%  Similarity=0.124  Sum_probs=85.9

Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecC---CCC-CeEEEeeCCCeEEEEEeccCCCC-C
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNP---LDD-NLILTGSADNSVRMFDRRNLTSN-G  251 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~---~~~-~~l~~~~~dg~i~~~d~~~~~~~-~  251 (387)
                      +++...+++|+.+|.++||+.......  -+.....-..+|..+..-.   ... ..||+ =.-..+.+|.+...... .
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            444568999999999999998664421  1222234457888887542   122 34444 45677888888542211 0


Q ss_pred             CC--CceEEecccc--ceEEEEEEcC----CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          252 VG--SPINKFEGHS--AAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       252 ~~--~~~~~~~~~~--~~i~~~~~~~----~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                      .+  -.+..+..|.  .....++.-|    .++.+++.=+.||.+.+|+-+...                +..+-..---
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----------------f~~~lp~~ll  176 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----------------FSRFLPDFLL  176 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----------------EEEEcCCCCC
Confidence            01  1122222232  2223333322    234567788999999999977631                1111111222


Q ss_pred             eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..-+.+.+.-+.++        +++.+..|.-|+...
T Consensus       177 PgPl~Y~~~tDsfv--------t~sss~~l~~Yky~~  205 (418)
T PF14727_consen  177 PGPLCYCPRTDSFV--------TASSSWTLECYKYQD  205 (418)
T ss_pred             CcCeEEeecCCEEE--------EecCceeEEEecHHH
Confidence            34466777666666        444446777776653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.01  E-value=0.029  Score=48.27  Aligned_cols=134  Identities=13%  Similarity=0.286  Sum_probs=89.2

Q ss_pred             CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547          215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~  294 (387)
                      .......|-| .+.-++.++.+..+..||-.       ++.+.+.. ..+....++|..++..+++.+-..+.+.+||+.
T Consensus        35 v~pi~~~w~~-e~~nlavaca~tiv~~YD~a-------gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   35 VGPIIHRWRP-EGHNLAVACANTIVIYYDKA-------GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             cccceeeEec-CCCceehhhhhhHHHhhhhh-------cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            3444567778 45558888889899999866       45555544 344556788888888777777788999999998


Q ss_pred             CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      +....+             +..-..|....  +.|++....++        .|-..|.+.|++..      ....+...-
T Consensus       106 ~eytqq-------------LE~gg~~s~sl--l~wsKg~~el~--------ig~~~gn~viynhg------tsR~iiv~G  156 (615)
T KOG2247|consen  106 SEYTQQ-------------LESGGTSSKSL--LAWSKGTPELV--------IGNNAGNIVIYNHG------TSRRIIVMG  156 (615)
T ss_pred             hhhHHH-------------HhccCcchHHH--HhhccCCcccc--------ccccccceEEEecc------chhhhhhhc
Confidence            742221             11111122222  67888777777        56666999999988      555555555


Q ss_pred             ccCceEEEeeec
Q 016547          375 KFKAHVISCTSK  386 (387)
Q Consensus       375 ~~~~~v~~~~f~  386 (387)
                      .|...+++.++.
T Consensus       157 kh~RRgtq~av~  168 (615)
T KOG2247|consen  157 KHQRRGTQIAVT  168 (615)
T ss_pred             ccccceeEEEec
Confidence            577777777664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.91  E-value=1.2  Score=35.33  Aligned_cols=82  Identities=7%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             EECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547           94 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  173 (387)
Q Consensus        94 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  173 (387)
                      .+..++++|++-..+|.+++||+.+.+.........+.....                      ..  ..  ......|.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~----------------------~~--~~--~~~~~~i~   70 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSS----------------------PV--SD--KSSSPNIT   70 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccc----------------------cc--cc--CCCCCcEE
Confidence            355578899999999999999999875543321100000000                      00  00  03456788


Q ss_pred             EEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547          174 DVTFCPSSAQEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  203 (387)
                      .+.+..+| .-+++- .+|..+.|+..-+.
T Consensus        71 ~~~lt~~G-~PiV~l-sng~~y~y~~~L~~   98 (219)
T PF07569_consen   71 SCSLTSNG-VPIVTL-SNGDSYSYSPDLGC   98 (219)
T ss_pred             EEEEcCCC-CEEEEE-eCCCEEEeccccce
Confidence            89998887 445544 45788999877655

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02193 nitrile-specifier protein

Probab=91.89  E-value=8.9  Score=34.74  Aligned_cols=62  Identities=6%  Similarity=-0.049  Sum_probs=32.3

Q ss_pred             eeEEEecCCC-----eEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCC----CeEEEEEecc
Q 016547          183 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRN  246 (387)
Q Consensus       183 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~  246 (387)
                      ++++.|+.++     .+..||+.+.++........  ....-..+...  ++.+++.++.+    ..+.+||+.+
T Consensus       280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t  352 (470)
T PLN02193        280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQ  352 (470)
T ss_pred             EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCC
Confidence            6777776543     46778887765322111000  00011122222  56677777655    4588888876

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.73  E-value=7.6  Score=34.64  Aligned_cols=85  Identities=13%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC---CCCCceEEec-----------cccceEEEEEEcCCC---Cee
Q 016547          216 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---GVGSPINKFE-----------GHSAAVLCVQWSPDK---SSV  278 (387)
Q Consensus       216 ~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~~-----------~~~~~i~~~~~~~~~---~~l  278 (387)
                      .|..+..++ .|..++..+.+|.+.++=.+.....   ..+++....+           ...-.+..++|+|+.   ..+
T Consensus       105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            467788899 8999999999997665532211000   0022211111           122346788999986   444


Q ss_pred             EEEecCCCeEEEEeCCCCCceecc
Q 016547          279 FGSSAEDGLLNIWDYEKVGKKVEQ  302 (387)
Q Consensus       279 l~s~~~d~~i~vwd~~~~~~~~~~  302 (387)
                       ..-+.|..|++||+....+...+
T Consensus       184 -~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  184 -VLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             -EEEecCcEEEEEecCCcchhhcc
Confidence             45667999999999986555433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.58  E-value=5.4  Score=31.11  Aligned_cols=116  Identities=9%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             CeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec-CC--C---eEEEE---eCCC-CC
Q 016547          228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA-ED--G---LLNIW---DYEK-VG  297 (387)
Q Consensus       228 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~-~d--~---~i~vw---d~~~-~~  297 (387)
                      +.|+.+...+.|.+|++....    .+.+.++..- +.|..+.++..|.|++ +-- ..  .   .+|+|   .... ..
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~Tv-~~V~~l~y~~~GDYlv-TlE~k~~~~~~~fvR~Y~NWr~~~~~~  102 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE----CPLLCTFSTV-GRVLQLVYSEAGDYLV-TLEEKNKRSPVDFVRAYFNWRSQKEEN  102 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC----CceeEEEcch-hheeEEEeccccceEE-EEEeecCCccceEEEEEEEhhhhcccC
Confidence            555555777889999998322    5677777754 7889999999999865 442 21  2   45654   3321 11


Q ss_pred             ceecc---C-----CCCCCC--CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          298 KKVEQ---G-----PRTTNY--PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       298 ~~~~~---~-----~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .+..-   +     +.....  +.. +..+. -...+.+++..|-...|++++.         +++.+|.+..
T Consensus       103 ~~v~vRiaG~~v~~~~~~~~~~qle-iiElP-l~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~  164 (215)
T PF14761_consen  103 SPVRVRIAGHRVTPSFNESSKDQLE-IIELP-LSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKY  164 (215)
T ss_pred             CcEEEEEcccccccCCCCccccceE-EEEec-CCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEE
Confidence            11110   0     000000  111 11122 2456788888887666776543         7999998873

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.58  E-value=12  Score=35.11  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=27.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  119 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  119 (387)
                      .++++.-+|.|+-++.+..||+|+++++...
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r   46 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPR   46 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence            4678888999999999999999999998643

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.37  E-value=5.9  Score=39.41  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ   64 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~   64 (387)
                      |-......++|.| ...++|.|+.+|.|+++-...-
T Consensus        33 G~~~~~~~~afD~-~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   33 GFPSTPSALAFDP-TQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCCCCCcceeecc-ccceEEEEEecccEEEecccce
Confidence            4445667888888 8889999999999999976544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.25  E-value=18  Score=36.41  Aligned_cols=167  Identities=11%  Similarity=0.144  Sum_probs=93.3

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE--------ECCCCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA--------MCPTEP  100 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~--------~~~~~~  100 (387)
                      .|...=..+-++|.-++.-+|  .|..+.+|+.+++.            ....+.+-.. .|..+.        |.|.=+
T Consensus        76 ~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~------------e~~~~d~~sh-tIl~V~LvkPkpgvFv~~Iq  140 (1311)
T KOG1900|consen   76 SNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDN------------ELAEYDGLSH-TILKVGLVKPKPGVFVPEIQ  140 (1311)
T ss_pred             cCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCC------------ccccccchhh-hheeeeeecCCCCcchhhhh
Confidence            344445566677766655555  57789999999862            2333333332 222332        223334


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      +++.-+.--.|.++-+.-.........                               ......+......|.|+....+
T Consensus       141 hlLvvaT~~ei~ilgV~~~~~~~~~~~-------------------------------f~~~~~i~~dg~~V~~I~~t~n  189 (1311)
T KOG1900|consen  141 HLLVVATPVEIVILGVSFDEFTGELSI-------------------------------FNTSFKISVDGVSVNCITYTEN  189 (1311)
T ss_pred             eeEEecccceEEEEEEEeccccCcccc-------------------------------cccceeeecCCceEEEEEeccC
Confidence            555444455677765542211100000                               0000222233456889997777


Q ss_pred             CCeeEEEecCCCeEEEEEcc----CC------CC------------ceeEEee-ccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          181 SAQEFCSVGDDSCLILWDAR----VG------TS------------PVIKVEK-AHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~----~~------~~------------~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                      | +.|++| .||  .+|.+.    .+      .+            |....+. .+..+|..+.++. ..+.+.+-+..|
T Consensus       190 G-RIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~  264 (1311)
T KOG1900|consen  190 G-RIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKG  264 (1311)
T ss_pred             C-cEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCc
Confidence            7 656555 556  444431    11      00            1111223 5677999999998 888999999999


Q ss_pred             eEEEEEecc
Q 016547          238 SVRMFDRRN  246 (387)
Q Consensus       238 ~i~~~d~~~  246 (387)
                      .|..||+..
T Consensus       265 ~v~~Y~i~~  273 (1311)
T KOG1900|consen  265 TVSAYDIGG  273 (1311)
T ss_pred             eEEEEEccC
Confidence            999999986

>PRK13684 Ycf48-like protein; Provisional

Probab=91.19  E-value=8.9  Score=32.87  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      .+.+.++.+.| ++.+++++..-...+.++-...             .-..........++++.+.++++.++.+. .|.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~~G~i~~s~~~gg~-------------tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~  236 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSSRGNFYSTWEPGQT-------------AWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQ  236 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeCCceEEEEcCCCCC-------------eEEEeeCCCcccceeeeEcCCCCEEEEec-CCE


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC-------eEEEEEccCCCe
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT-------VEDVTFCPSSAQ  183 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~  183 (387)
                      +.+=..+.+                                           ..+.....+       +..+.+.+++  
T Consensus       237 ~~~~s~d~G-------------------------------------------~sW~~~~~~~~~~~~~l~~v~~~~~~--  271 (334)
T PRK13684        237 IRFNDPDDL-------------------------------------------ESWSKPIIPEITNGYGYLDLAYRTPG--  271 (334)
T ss_pred             EEEccCCCC-------------------------------------------CccccccCCccccccceeeEEEcCCC--


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  243 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d  243 (387)
                      .+..++.+|.+..=.-.-...........-....+.+.+.  +++..+..+..|.|.-++
T Consensus       272 ~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        272 EIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFL--DPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEe--CCCceEEECCCceEEEec

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.11  E-value=6.4  Score=31.10  Aligned_cols=105  Identities=10%  Similarity=0.123  Sum_probs=72.5

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEE--ccCCCC---ceeEEeec----cCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWD--ARVGTS---PVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd--~~~~~~---~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      -+.++|..+...+..+-+.+-.|.-||  ..++..   ..+..+..    .....-.++++. .|++.++.-..++|..+
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            367889877756777778888887787  444431   11111111    112234566676 89999999999999999


Q ss_pred             EeccCCCCCCCCceEEeccccceEEEEEEcCCC-CeeEEEec
Q 016547          243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-SSVFGSSA  283 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ll~s~~  283 (387)
                      |..+      ++.+.+++-....|++++|-..+ ..+.+++.
T Consensus       239 dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  239 DPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             CCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            9999      99999999888999999996543 22344443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.93  E-value=2.9  Score=31.74  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             ceEEEEEEcCCC-----CeeEEEecCCCeEEEEeCCC
Q 016547          264 AAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       264 ~~i~~~~~~~~~-----~~ll~s~~~d~~i~vwd~~~  295 (387)
                      ..+..++|||.|     +.+||+...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999953     66889999999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.84  E-value=10  Score=32.83  Aligned_cols=153  Identities=14%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             EEccCCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccC-CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547          176 TFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  252 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  252 (387)
                      +|.++|.++|+.+..||.  +.+.|+.+++   +..+.... .......++| +.+.++-......|+-.|+.+      
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T------  111 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDT------  111 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCc------
Confidence            578888777777776665  5566777766   33443332 2233566778 666665555566888889888      


Q ss_pred             CCceEEeccccceEEEEEE--cCCCCeeEEEecC----------------------CCeEEEEeCCCCCceeccCCCCCC
Q 016547          253 GSPINKFEGHSAAVLCVQW--SPDKSSVFGSSAE----------------------DGLLNIWDYEKVGKKVEQGPRTTN  308 (387)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~--~~~~~~ll~s~~~----------------------d~~i~vwd~~~~~~~~~~~~~~~~  308 (387)
                      .+....+...+..+-...|  +.++.. ++..-.                      .+.|.--|+.++            
T Consensus       112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG------------  178 (386)
T PF14583_consen  112 LEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG------------  178 (386)
T ss_dssp             --EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------
T ss_pred             CcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC------------
Confidence            4443444444555544555  334553 322110                      111222222221            


Q ss_pred             CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce-EEEEecC
Q 016547          309 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT-LQIWRMS  359 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~-i~iw~~~  359 (387)
                          ....+..-..++.-+.|+|..+.+++-|-    =|..|.. -|||-++
T Consensus       179 ----~~~~v~~~~~wlgH~~fsP~dp~li~fCH----EGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  179 ----ERKVVFEDTDWLGHVQFSPTDPTLIMFCH----EGPWDLVDQRIWTIN  222 (386)
T ss_dssp             -----EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEE
T ss_pred             ----ceeEEEecCccccCcccCCCCCCEEEEec----cCCcceeceEEEEEE
Confidence                12222233457788999999999888775    2444443 4777766

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.82  E-value=5.8  Score=35.35  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEcc---------CCCCceeE-E-------e-eccCCCeeEEEecCCC--CCe
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR---------VGTSPVIK-V-------E-KAHDADLHCVDWNPLD--DNL  229 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~-~-------~-~~~~~~i~~~~~~~~~--~~~  229 (387)
                      -.|..+..++.| ..++-.+.+|.+.++=.+         .++..... .       + ....-.+...+|+|..  ...
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            357888889998 567777777876665422         22211110 0       1 1112245678899944  578


Q ss_pred             EEEeeCCCeEEEEEeccC
Q 016547          230 ILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       230 l~~~~~dg~i~~~d~~~~  247 (387)
                      |+.-+.|+.||+||+...
T Consensus       183 L~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEEecCcEEEEEecCCc
Confidence            888899999999999864

>PLN02153 epithiospecifier protein

Probab=90.27  E-value=11  Score=32.41  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=14.1

Q ss_pred             CCcEEEEecCC-------CcEEEEeccCC
Q 016547           43 NTKIVATHTDS-------PDVLIWDVEAQ   64 (387)
Q Consensus        43 ~~~~l~t~~~d-------g~v~iwd~~~~   64 (387)
                      ++.+++.|+.+       ..+.+||+.+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~   60 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH   60 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCC
Confidence            45677777753       25777777665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.23  E-value=8.8  Score=31.21  Aligned_cols=201  Identities=8%  Similarity=-0.005  Sum_probs=105.0

Q ss_pred             EEEeccCCCceEEEEECCCCCEEEEecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      ..+..........+.|..+|.++-+.+.-|  .|+.+|+.+++......                               
T Consensus        37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-------------------------------   85 (264)
T PF05096_consen   37 ETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-------------------------------   85 (264)
T ss_dssp             EEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-------------------------------
T ss_pred             EECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-------------------------------
Confidence            334434444456788877888888877666  68889988764322111                               


Q ss_pred             CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                             +. ..----.++...+  .++.-.=.++...+||..+.+  .+..+. ..+.-..++.   ++..|+.+....
T Consensus        86 -------l~-~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~--~~~~~~-y~~EGWGLt~---dg~~Li~SDGS~  149 (264)
T PF05096_consen   86 -------LP-PRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK--KIGTFP-YPGEGWGLTS---DGKRLIMSDGSS  149 (264)
T ss_dssp             --------T-TT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE--EEEEEE--SSS--EEEE---CSSCEEEE-SSS
T ss_pred             -------CC-ccccceeEEEECC--EEEEEEecCCeEEEEccccce--EEEEEe-cCCcceEEEc---CCCEEEEECCcc
Confidence                   11 1112233444433  445455578899999998766  344443 2345566663   677888888788


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccc--c---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                      .++++|..+      .+...++.-.  .   ..++-+.|- +|. ++|-.-....|...|..++.-.......      .
T Consensus       150 ~L~~~dP~~------f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~~iDls------~  215 (264)
T PF05096_consen  150 RLYFLDPET------FKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVGWIDLS------G  215 (264)
T ss_dssp             EEEEE-TTT-------SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEEEEE-H------H
T ss_pred             ceEEECCcc------cceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhh------H
Confidence            899999877      4444444321  1   134455554 332 4555555555555555553211000000      0


Q ss_pred             eeee------eccCCCCeeEEEEccCCCeEEEEec
Q 016547          313 LFFQ------HAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       313 ~~~~------~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      +...      ......-.+.+|+.|..+.+++++-
T Consensus       216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             hhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            0000      0011456899999999999998654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.75  E-value=2  Score=23.12  Aligned_cols=24  Identities=13%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             CCCCeeEEEecCCCeEEEEeCCCC
Q 016547          273 PDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       273 ~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      |++++++++...++.|.++|..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~   24 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN   24 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC
Confidence            578888888888999999999764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.73  E-value=6.1  Score=33.79  Aligned_cols=24  Identities=8%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEE
Q 016547           91 FALAMCPTEPYVLSGGKDKSVVLWS  115 (387)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~i~vwd  115 (387)
                      +.|+|.|+|+.+++ ...|.|++++
T Consensus         5 ~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    5 RSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             EEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             eEEEEeCCCcEEEE-eCCceEEEEe
Confidence            68999999877665 5599999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=89.68  E-value=21  Score=34.75  Aligned_cols=112  Identities=6%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             eeEEEecCCCCCeEEEee----------CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          217 LHCVDWNPLDDNLILTGS----------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       217 i~~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                      +.+..|....+.++++|.          ..|.|.+|......+   .+.+.+.+ -++.+.++..- +|+ ++|+  -+.
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---L~~v~e~~-v~Gav~aL~~f-ngk-llA~--In~  848 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---LELVAETV-VKGAVYALVEF-NGK-LLAG--INQ  848 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---eeeeeeee-eccceeehhhh-CCe-EEEe--cCc
Confidence            445557762377888876          347888888776111   22333332 23455555432 455 4533  467


Q ss_pred             eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .|++|+....+.               +..-..+..++..+...-.++.+++        |.-=+++.+-...
T Consensus       849 ~vrLye~t~~~e---------------Lr~e~~~~~~~~aL~l~v~gdeI~V--------gDlm~Sitll~y~  898 (1096)
T KOG1897|consen  849 SVRLYEWTTERE---------------LRIECNISNPIIALDLQVKGDEIAV--------GDLMRSITLLQYK  898 (1096)
T ss_pred             EEEEEEccccce---------------ehhhhcccCCeEEEEEEecCcEEEE--------eeccceEEEEEEe
Confidence            899999987522               3333556678888888888888774        3333566665554

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.30  E-value=11  Score=31.15  Aligned_cols=53  Identities=17%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec------CCCeEEEEeCCCC
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA------EDGLLNIWDYEKV  296 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~------~d~~i~vwd~~~~  296 (387)
                      ..|++||...      .+-..--.+-.+.|+++.|..+.+ |+++|.      ....+..||+...
T Consensus        16 ~~lC~yd~~~------~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~   74 (281)
T PF12768_consen   16 PGLCLYDTDN------SQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ   74 (281)
T ss_pred             CEEEEEECCC------CEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC
Confidence            4589999876      222222223567899999985554 666664      4566888998874

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.99  E-value=25  Score=34.61  Aligned_cols=74  Identities=9%  Similarity=0.077  Sum_probs=44.9

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc--CCCceEEEEECCCC------CEEEEecCCCeEEEE
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCPTE------PYVLSGGKDKSVVLW  114 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~~v~~~~~~~~~------~~l~s~~~d~~i~vw  114 (387)
                      +.+.++.+...|.+..+..+..            .....+..|  -+..|.|+++.++.      ++++.++.|+++++.
T Consensus       548 nr~qiVvalSngelvyfe~d~s------------gql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii  615 (1205)
T KOG1898|consen  548 NRRQIVVALSNGELVYFEGDVS------------GQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII  615 (1205)
T ss_pred             cceEEEEEccCCeEEEEEeccC------------ccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence            3445666666666666665432            111222111  11247788888764      579999999999999


Q ss_pred             EcCCCcCccccCCC
Q 016547          115 SIQDHITSSATDPA  128 (387)
Q Consensus       115 d~~~~~~~~~~~~~  128 (387)
                      .+...........+
T Consensus       616 sL~p~d~l~~ls~q  629 (1205)
T KOG1898|consen  616 SLDPSDCLQPLSVQ  629 (1205)
T ss_pred             EecCcceEEEcccc
Confidence            99866554444443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.67  E-value=4.6  Score=37.42  Aligned_cols=36  Identities=14%  Similarity=0.421  Sum_probs=27.1

Q ss_pred             ceEEEEECC----CCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547           89 AEFALAMCP----TEPYVLSGGKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        89 ~v~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~~~~~  124 (387)
                      .+..++++.    +..+|++.+.|+++|+||+.++.+...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            455666666    678999999999999999999877433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.18  E-value=17  Score=31.79  Aligned_cols=42  Identities=10%  Similarity=0.000  Sum_probs=21.4

Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                      ..+.+||..+.++............-.++...  ++.+++.|+.
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~--~~~iYv~GG~  230 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK--GNKLWLINGE  230 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEE--CCEEEEEeee
Confidence            35889998887753332222111112233332  5667777764

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.99  E-value=7.8  Score=27.66  Aligned_cols=75  Identities=17%  Similarity=0.137  Sum_probs=47.4

Q ss_pred             EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CCCEEEEecCCCeEE
Q 016547           38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVV  112 (387)
Q Consensus        38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~~~l~s~~~d~~i~  112 (387)
                      +|.. ....|+.++.-|+|.|.+..........    ....+..+.-..  .|++|+-.+     +...|+.|+ ...+.
T Consensus         5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~----~~~~i~~LNin~--~italaaG~l~~~~~~D~LliGt-~t~ll   76 (136)
T PF14781_consen    5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGR----QDSDISFLNINQ--EITALAAGRLKPDDGRDCLLIGT-QTSLL   76 (136)
T ss_pred             EeCC-CceeEEEEecCCEEEEECCCcccccccc----ccCceeEEECCC--ceEEEEEEecCCCCCcCEEEEec-cceEE
Confidence            4444 4457888888899999987765322211    224455555554  377775543     244677776 56899


Q ss_pred             EEEcCCCc
Q 016547          113 LWSIQDHI  120 (387)
Q Consensus       113 vwd~~~~~  120 (387)
                      .||+.+..
T Consensus        77 aYDV~~N~   84 (136)
T PF14781_consen   77 AYDVENNS   84 (136)
T ss_pred             EEEcccCc
Confidence            99998653

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.86  E-value=3.6  Score=26.83  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      ..+.|.++|++++|+++....+.|++|+...
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            3578999999999999999999999998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.73  E-value=25  Score=33.16  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=26.7

Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ...+..+..||+.++ +|--...|.|.+-+++..
T Consensus       216 ~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRF-LALYTETGKIWVVSIDLS  248 (829)
T ss_pred             CceEEEEEEcCCcce-EEEEecCCcEEEEecchh
Confidence            456788999999997 567788999999888764

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.54  E-value=29  Score=33.72  Aligned_cols=73  Identities=19%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC----Cc---eEEec------cccceEEEEEEcCCCCeeEEE
Q 016547          215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG----SP---INKFE------GHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~---~~~~~------~~~~~i~~~~~~~~~~~ll~s  281 (387)
                      ..|.+++... -+..++....||+|.++|..+++.....    ..   +.++.      .+-..+..++|||.+-- ++.
T Consensus       260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-~v~  337 (753)
T PF11635_consen  260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-LVQ  337 (753)
T ss_pred             CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-EEE
Confidence            4566777666 6778999999999999998885221101    11   11111      01123456889999884 557


Q ss_pred             ecCCCeEE
Q 016547          282 SAEDGLLN  289 (387)
Q Consensus       282 ~~~d~~i~  289 (387)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            77788866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.53  E-value=2.9  Score=22.16  Aligned_cols=30  Identities=3%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEccCCCeeEEEecCC--CeEEEE
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDD--SCLILW  197 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw  197 (387)
                      ....-....|+|||..++.+...+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345677889999997777777776  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.49  E-value=18  Score=30.15  Aligned_cols=122  Identities=10%  Similarity=0.118  Sum_probs=74.9

Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCC-----CCceeEEeec-----cCCCeeEEEecCCCC------------C
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVIKVEKA-----HDADLHCVDWNPLDD------------N  228 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~i~~~~~~~~~~------------~  228 (387)
                      .-+.|+++|.+ .+.++....+...+||....     .+++...+..     .....+.+.|+. ..            .
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence            45889999998 67777778899999998721     2223333332     234677787775 22            2


Q ss_pred             eEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccce-EEEEEEcC--CCCeeEEEecCCCeEEEEeCCC
Q 016547          229 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAA-VLCVQWSP--DKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       229 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .++.+++||+|.-|.-.-....- ......+. ..... -..+++..  .+.+|+++--..++|.|||-.-
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            36778899999999854311000 01112222 11122 34555553  3567777777899999998664

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.36  E-value=3.6  Score=22.08  Aligned_cols=25  Identities=8%  Similarity=0.252  Sum_probs=18.8

Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCC
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~  203 (387)
                      |++..++++...++.|.++|..+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~   25 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK   25 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe
Confidence            4564566667678999999997766

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.07  E-value=21  Score=30.60  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=38.5

Q ss_pred             ceEEeccccceEEEEEEcCC-------CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          255 PINKFEGHSAAVLCVQWSPD-------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~-------~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                      ++..+..| ..+..+.|-..       |. +|++.-..+.|....+.......           .....+......+.++
T Consensus       245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~-~~~~~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~r~~~v  311 (331)
T PF07995_consen  245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGD-LFVADYGGGRIWRLDLDEDGSVT-----------EEEEFLGGFGGRPRDV  311 (331)
T ss_dssp             -SEEETTT---EEEEEEE-SSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEE-----------EEEEECTTSSS-EEEE
T ss_pred             cceeecCc-cccCceEEECCccCccccCc-EEEecCCCCEEEEEeeecCCCcc-----------ceEEccccCCCCceEE
Confidence            44455544 55677777543       33 45566566788888876432211           1111123444579999


Q ss_pred             EEccCCCeEE
Q 016547          328 HWNASDPWTV  337 (387)
Q Consensus       328 ~~~~~~~~l~  337 (387)
                      ++.|||..++
T Consensus       312 ~~~pDG~Lyv  321 (331)
T PF07995_consen  312 AQGPDGALYV  321 (331)
T ss_dssp             EEETTSEEEE
T ss_pred             EEcCCCeEEE
Confidence            9999987666

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.84  E-value=24  Score=31.09  Aligned_cols=68  Identities=16%  Similarity=0.096  Sum_probs=39.3

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      ..+.++.+.+++ . ++.++..|.+.... ..++ .........-...++.+.|.+ +++.+ +.+.+|.|.-|
T Consensus       328 ~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~-~~G~~G~il~~  396 (398)
T PLN00033        328 FGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGF-VLGNDGVLLRY  396 (398)
T ss_pred             cceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceE-EEeCCcEEEEe
Confidence            358889998876 5 44555677766654 2333 111111122345688999876 55444 44577876544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.46  E-value=11  Score=26.91  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEccCCCC-----ceeEEeeccCCCeeEEEecCC----CCCeEEEeeCCCeEEEEEec
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~~~d~~  245 (387)
                      -.|.... ..|+.++.-|.|.|++......     .....+..-...|++|+-.+.    ....|+.|+ ...+..||..
T Consensus         4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3455555 3577788889999998765431     111233345667888865442    355666665 5568899998


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcC---CCCeeEEEecCCCeEEEEeCCC
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .      ..-+...+ -...|+++.+-.   ....+++.|+ +..|.-||...
T Consensus        82 ~------N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   82 N------NSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             c------Cchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            7      33333222 345677776632   1222444444 77788777664

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.32  E-value=26  Score=30.93  Aligned_cols=149  Identities=13%  Similarity=0.190  Sum_probs=76.5

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      ...+..++++ .+++.+.....++-||--....  ..........++.+.+.+ ++.+++++ .+|.+.. ....     
T Consensus       241 f~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W--~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~-----  309 (398)
T PLN00033        241 FSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYW--QPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGT-----  309 (398)
T ss_pred             eeeEEEcCCC-CEEEEECCccEEEecCCCCcce--EEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCC-----
Confidence            4455666776 5555554433333454322111  111223345688999988 77777665 5666543 2222     


Q ss_pred             CCC-----ceEEecc--ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547          252 VGS-----PINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  324 (387)
Q Consensus       252 ~~~-----~~~~~~~--~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  324 (387)
                       ++     .......  -...+..+.|.+++. ++++ +.+|.+.... .. ++.           .+.......-....
T Consensus       310 -G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~-G~~G~v~~s~-D~-G~t-----------W~~~~~~~~~~~~l  373 (398)
T PLN00033        310 -GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAA-GGSGILLRST-DG-GKS-----------WKRDKGADNIAANL  373 (398)
T ss_pred             -CCcccccceeecccCCCCcceEEEEEcCCCc-EEEE-ECCCcEEEeC-CC-Ccc-----------eeEccccCCCCcce
Confidence             22     2222221  123588999998887 4544 4577665553 22 211           01111012223467


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      +.+.|.++++-++         .|.+|.|.-|
T Consensus       374 y~v~f~~~~~g~~---------~G~~G~il~~  396 (398)
T PLN00033        374 YSVKFFDDKKGFV---------LGNDGVLLRY  396 (398)
T ss_pred             eEEEEcCCCceEE---------EeCCcEEEEe
Confidence            8899877655444         3455776554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.29  E-value=39  Score=33.01  Aligned_cols=218  Identities=11%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             CCcEEEEEec------CCCCcEEEEecCCCcEEEEeccCCCC---cccccCCCCCCCeEEEeccCCC--ceEEEEECC-C
Q 016547           31 PGEVNRIREL------PQNTKIVATHTDSPDVLIWDVEAQPN---RHAVLGATNSRPDLILTGHQDN--AEFALAMCP-T   98 (387)
Q Consensus        31 ~~~v~~i~~~------~~~~~~l~t~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~-~   98 (387)
                      ..+|..|+|.      ....++|++=... .+.|+...-.+.   .......-...++..+..+..+  +...++|+| +
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~-st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRTET-STTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEcCC-EEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe------
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV------  172 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------  172 (387)
                      .+.||.....|.-.||++...........                                   .....+.+.+      
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~-----------------------------------~~~~~~~gsi~~d~~e  202 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNL-----------------------------------RLSRNISGSIIFDPEE  202 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcce-----------------------------------eeccCCCccccCCCcc


Q ss_pred             E----EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc--
Q 016547          173 E----DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN--  246 (387)
Q Consensus       173 ~----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  246 (387)
                      .    .+.|.++. ..|+.++.. .+.++|+++...............|..+.-+|.+..+++.-+. ..|.+.|+..  
T Consensus       203 ~s~w~rI~W~~~~-~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~  279 (765)
T PF10214_consen  203 LSNWKRILWVSDS-NRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSS  279 (765)
T ss_pred             cCcceeeEecCCC-CEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCCC


Q ss_pred             -CCCCCCCCceEEeccc-------cceEEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547          247 -LTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  293 (387)
Q Consensus       247 -~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~  293 (387)
                       .     ...+.+++ |       .-.+.......+.-.+++.......|.+|.+
T Consensus       280 ~~-----~~~llSwk-H~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f  328 (765)
T PF10214_consen  280 EK-----LTRLLSWK-HFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF  328 (765)
T ss_pred             CC-----eeeeeecc-cccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE

These proteins are found in fungi.

>PLN02193 nitrile-specifier protein

Probab=84.64  E-value=31  Score=31.34  Aligned_cols=62  Identities=6%  Similarity=0.102  Sum_probs=33.6

Q ss_pred             eeEEEecCC----CeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCC--------------CeEEEE
Q 016547          183 QEFCSVGDD----SCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMF  242 (387)
Q Consensus       183 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d--------------g~i~~~  242 (387)
                      ++++.++.+    ..+.+||+.+.++..+....  .......+++. - ++++++.|+..              +.+.+|
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-V-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-E-CCEEEEECCccCCccccccCccceeccEEEE
Confidence            566666654    45889999887643322210  11111122222 2 56778887753              246778


Q ss_pred             Eecc
Q 016547          243 DRRN  246 (387)
Q Consensus       243 d~~~  246 (387)
                      |+.+
T Consensus       408 D~~t  411 (470)
T PLN02193        408 DTET  411 (470)
T ss_pred             EcCc
Confidence            8776

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.09  E-value=26  Score=29.97  Aligned_cols=170  Identities=12%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             CeEEEEEccCCCeeEEEecCC------CeEEEEEccCCCCceeE-------------EeeccCCCeeEEEecCCCCCeEE
Q 016547          171 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIK-------------VEKAHDADLHCVDWNPLDDNLIL  231 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~l~  231 (387)
                      ..-+|++.+++ .++++.-.+      ..|..++.. ++.....             .-.......-+|+++| +++.|+
T Consensus        86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF  162 (326)
T ss_pred             ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence            34567776666 667776666      778888866 3321111             1112345678999999 888666


Q ss_pred             EeeC-----CC---------eEEEEEeccCCCC-CCCCceEEecc-----ccceEEEEEEcCCCCeeEEEec----CCCe
Q 016547          232 TGSA-----DN---------SVRMFDRRNLTSN-GVGSPINKFEG-----HSAAVLCVQWSPDKSSVFGSSA----EDGL  287 (387)
Q Consensus       232 ~~~~-----dg---------~i~~~d~~~~~~~-~~~~~~~~~~~-----~~~~i~~~~~~~~~~~ll~s~~----~d~~  287 (387)
                      ++..     |+         .++++........ ...+....+..     ....|..+.+-++++.++.==+    ....
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~  242 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY  242 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence            6543     22         1556555432110 00112222222     3567889999999985432222    2345


Q ss_pred             EEEEeCCCCCc--eecc--CC--CCCCCCceeeeeecc---CCCCeeEEEEcc--CCCeEEEEecCC
Q 016547          288 LNIWDYEKVGK--KVEQ--GP--RTTNYPAGLFFQHAG---HRDKVVDFHWNA--SDPWTVVSVSDD  343 (387)
Q Consensus       288 i~vwd~~~~~~--~~~~--~~--~~~~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~s~s~d  343 (387)
                      ++|+.+.-...  ....  ..  ........++..+..   ....+-.|+|.|  ++...++..|||
T Consensus       243 ~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDn  309 (326)
T PF13449_consen  243 KRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDN  309 (326)
T ss_pred             EEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECC
Confidence            66665543211  1000  00  000011122222211   256788999977  677766666665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.68  E-value=31  Score=30.58  Aligned_cols=161  Identities=11%  Similarity=0.126  Sum_probs=91.7

Q ss_pred             CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-----CCCEEEEecCCCeEEEEE
Q 016547           41 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVVLWS  115 (387)
Q Consensus        41 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-----~~~~l~s~~~d~~i~vwd  115 (387)
                      +.+.+.+++|+.+|.++||+........         ....++.....+|..+..-+     +...||. -.-+.+.+|.
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~---------~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~  103 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQP---------EDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYS  103 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCC---------ccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEE
Confidence            3466799999999999999985542111         12233333344677776532     2234444 3457888888


Q ss_pred             cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC--CCCeEEEEEccCC----CeeEEEec
Q 016547          116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--EDTVEDVTFCPSS----AQEFCSVG  189 (387)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~----~~~l~~~~  189 (387)
                      +........                              .....+. .....|  ......+++-|-|    ..++.+=+
T Consensus       104 v~~~~g~~~------------------------------~g~~~~L-~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS  152 (418)
T PF14727_consen  104 VSLVDGTVE------------------------------HGNQYQL-ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQS  152 (418)
T ss_pred             EEecCCCcc------------------------------cCcEEEE-EEEEEEecccceeEEEEEECCCCCCceEEEEEe
Confidence            732111000                              0000111 111222  1223344443332    36788889


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      .||.+.+++-+...  ....+. ..--...+.|.+ ..+.|++++.+..+.-|....
T Consensus       153 ~DG~L~~feqe~~~--f~~~lp-~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  153 MDGSLSFFEQESFA--FSRFLP-DFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQD  205 (418)
T ss_pred             cCceEEEEeCCcEE--EEEEcC-CCCCCcCeEEee-cCCEEEEecCceeEEEecHHH
Confidence            99999999866543  222222 233344678888 888999999999999887654

>PLN02153 epithiospecifier protein

Probab=82.94  E-value=30  Score=29.80  Aligned_cols=53  Identities=11%  Similarity=0.171  Sum_probs=27.6

Q ss_pred             CeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCC--------------CeEEEEEecc
Q 016547          192 SCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMFDRRN  246 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d--------------g~i~~~d~~~  246 (387)
                      ..+.+||+.+.++..+....  .......++. .. ++.+++.|+..              +.+..||..+
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~  285 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET  285 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeE-EE-CCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence            45888998887743322110  0011112222 22 56777887752              2566777765

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=82.67  E-value=28  Score=31.11  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=25.2

Q ss_pred             CCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          215 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ..|.+++..+ ..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDP-SRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999 779999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.46  E-value=47  Score=31.79  Aligned_cols=96  Identities=15%  Similarity=0.364  Sum_probs=49.4

Q ss_pred             EEEEEccCCCeeEEEecCCC-----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          173 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ..+.|-|+| ..+++-..||     .|.++....-+.-....-.+....+..++|+- ....++. ...+.+.+|-..+ 
T Consensus       250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~-~s~vlav-~~~n~~~lwttkN-  325 (1243)
T COG5290         250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLAV-AEGNLLKLWTTKN-  325 (1243)
T ss_pred             hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhH-HHHHHHH-hhcceEEEEEccc-
Confidence            347899999 6788766554     24444422111000001112233456677765 4444443 4567799998776 


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCCe
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSS  277 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  277 (387)
                           ..-.....-.-..+.-+.|+|...+
T Consensus       326 -----yhWYLK~e~~ip~~s~vkwhpe~~n  350 (1243)
T COG5290         326 -----YHWYLKVERQIPGISYVKWHPEEKN  350 (1243)
T ss_pred             -----eEEEEEEeecCCCcceeeeccccCc
Confidence                 3322222222234566788886543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.03  E-value=7.2  Score=36.17  Aligned_cols=71  Identities=14%  Similarity=0.152  Sum_probs=40.1

Q ss_pred             eeEEEecCCCeEEEEEccC---CCCceeEE-ee--------------------ccCCCeeEEEecC---CCCCeEEEeeC
Q 016547          183 QEFCSVGDDSCLILWDARV---GTSPVIKV-EK--------------------AHDADLHCVDWNP---LDDNLILTGSA  235 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~---~~~~~~~~-~~--------------------~~~~~i~~~~~~~---~~~~~l~~~~~  235 (387)
                      ..++.+..||.+.......   ........ +.                    ........+++++   .+..++++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            5677788888888887664   11000000 00                    0112334444433   15678999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEe
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      |+.+|+||+.+      ++++.+.
T Consensus       239 D~~LRiW~l~t------~~~~~~~  256 (547)
T PF11715_consen  239 DHTLRIWSLET------GQCLATI  256 (547)
T ss_dssp             TSEEEEEETTT------TCEEEEE
T ss_pred             CCeEEEEECCC------CeEEEEe
Confidence            99999999998      6665543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=81.84  E-value=28  Score=34.80  Aligned_cols=123  Identities=11%  Similarity=0.129  Sum_probs=67.7

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      ++.......+|+|.+++-.  .| +|++|. ...|.||+++.....         ..+..+.-    .++......-+++
T Consensus      1088 lKel~~eE~KGtVsavceV--~G-~l~~~~-GqKI~v~~l~r~~~l---------igVaFiD~----~~yv~s~~~vknl 1150 (1366)
T KOG1896|consen 1088 LKELYIEEQKGTVSAVCEV--RG-HLLSSQ-GQKIIVRKLDRDSEL---------IGVAFIDL----PLYVHSMKVVKNL 1150 (1366)
T ss_pred             eeeeehhhcccceEEEEEe--cc-EEEEcc-CcEEEEEEeccCCcc---------eeeEEecc----ceeEEehhhhhhh
Confidence            3444444578999999743  44 455543 347999999655211         11111111    1223333334566


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEcc
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCP  179 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~  179 (387)
                      |+.|.--+.|.+..++.....                                       +..+.  ...-.+.++.|.-
T Consensus      1151 Il~gDV~ksisfl~fqeep~r---------------------------------------lsL~srd~~~l~v~s~EFLV 1191 (1366)
T KOG1896|consen 1151 ILAGDVMKSISFLGFQEEPYR---------------------------------------LSLLSRDFEPLNVYSTEFLV 1191 (1366)
T ss_pred             eehhhhhhceEEEEEccCceE---------------------------------------EEEeecCCchhhceeeeeEE
Confidence            777766666776666532111                                       01111  1233578888877


Q ss_pred             CCCe-eEEEecCCCeEEEEEcc
Q 016547          180 SSAQ-EFCSVGDDSCLILWDAR  200 (387)
Q Consensus       180 ~~~~-~l~~~~~dg~i~iwd~~  200 (387)
                      +|.+ .++++..++.|++|-..
T Consensus      1192 dg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1192 DGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             cCCeeEEEEEcCCCcEEEEEeC
Confidence            7654 46777889998887543

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=80.48  E-value=34  Score=28.87  Aligned_cols=117  Identities=8%  Similarity=-0.035  Sum_probs=0.0

Q ss_pred             CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547          226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  305 (387)
                      ++++|+.|+++| +.+.++..      .......-.+...|+++...+..+.|++-++....++++++............
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~------~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~   84 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISD------QPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS   84 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEccc------CCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC


Q ss_pred             CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          306 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      .............+|......+........+.+.++..       .+|.++
T Consensus        85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~-------~~i~l~  128 (302)
T smart00036       85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQ-------SSVVLL  128 (302)
T ss_pred             ccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcC-------CeEEEE

Unpublished observations.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.35  E-value=54  Score=31.12  Aligned_cols=53  Identities=8%  Similarity=0.081  Sum_probs=35.4

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP  224 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (387)
                      ..+..+..+|+. .+++--..+|.|.+-+.+..+.-+......| .+...++|.-
T Consensus       217 ~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcg  269 (829)
T KOG2280|consen  217 SSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCG  269 (829)
T ss_pred             ceEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeec
Confidence            567788999988 7888888899999888776663222222223 2334677764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=80.34  E-value=44  Score=30.05  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEEecC
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNP  224 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~  224 (387)
                      +...-..-+.|+|.|++ .+|++--..|.|++++...........+     .........|+++|
T Consensus        25 va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P   88 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP   88 (454)
T ss_pred             EECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence            34445667899999998 6666554469999998655432111111     11356788999998

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=80.07  E-value=50  Score=30.55  Aligned_cols=73  Identities=15%  Similarity=0.297  Sum_probs=43.3

Q ss_pred             EEEecCCCCCeEEEeeCC-----C-----------eEEEEEeccCCCCCCCCceEEeccccc---------eEEEEEEcC
Q 016547          219 CVDWNPLDDNLILTGSAD-----N-----------SVRMFDRRNLTSNGVGSPINKFEGHSA---------AVLCVQWSP  273 (387)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d-----g-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~  273 (387)
                      .+.++| ...++..+..+     +           .|.-.|+++      ++..-.++....         ...-+.+..
T Consensus       238 ~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T------G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~  310 (527)
T TIGR03075       238 TGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT------GKIKWHYQTTPHDEWDYDGVNEMILFDLKK  310 (527)
T ss_pred             ceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc------CCEEEeeeCCCCCCccccCCCCcEEEEecc
Confidence            346777 55556555422     2           456667776      666655553211         111222334


Q ss_pred             CCC--eeEEEecCCCeEEEEeCCCCCc
Q 016547          274 DKS--SVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       274 ~~~--~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      +|+  .+++.+..+|.+.+.|-++++.
T Consensus       311 ~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       311 DGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CCcEEEEEEEeCCCceEEEEECCCCce
Confidence            555  4678999999999999988543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-42
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-41
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-40
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-40
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-40
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-39
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-06
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		6e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 163/343 (47%), Gaps = 53/343 (15%)
Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ 
Sbjct: 121 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQK 178
Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    ++LS   D ++ LW                         I   PK 
Sbjct: 179 EG-YGLSWNPNLSGHLLSASDDHTICLWD------------------------ISAVPK- 212
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSP 205
                   +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS 
Sbjct: 213 --------EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK 264
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 265 PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 319
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKV 324
           +  VQWSP   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+
Sbjct: 320 IFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 325 VDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
            DF WN ++PW                 +Q+W+M++ IY  +D
Sbjct: 378 SDFSWNPNEPW-------VICSVSEDNIMQVWQMAENIYNDED 413

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 158/340 (46%), Gaps = 49/340 (14%)
Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  I+AT T S DVL++D    P +    G  N  PDL L GHQ 
Sbjct: 123 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQK 180
Query: 88  NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 147
                        ++LS   D +V LW I               +AG         PK  
Sbjct: 181 EGYGLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK-- 214
Query: 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPV 206
                  +G  V  + I+ GH   VEDV +       F SV DD  L++WD R   TS  
Sbjct: 215 -------EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKP 267
Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266
             +  AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326
             V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 327 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQ 366
           F WN ++PW                 +QIW+M++ IY  +
Sbjct: 382 FSWNPNEPW-------VICSVSEDNIMQIWQMAENIYNDE 414

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 51/342 (14%)
Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  ++AT T S DVL++D    P++    G    +PDL L GHQ 
Sbjct: 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQK 182
Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    Y+LS   D ++ LW I           AT K               
Sbjct: 183 EG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------------- 216
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
                   +   +  + I+ GH   VEDV +       F SV DD  L++WD R   TS 
Sbjct: 217 --------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 268
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 323
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
           +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ 
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKIS 382
Query: 326 DFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
           DF WN ++PW                 +Q+W+M++ +Y  ++
Sbjct: 383 DFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 417

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 51/342 (14%)
Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  ++AT T S DVL++D    P++    G    +PDL L GHQ 
Sbjct: 127 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQK 184
Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    Y+LS   D ++ LW I           AT K               
Sbjct: 185 EG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------------- 218
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
                   +   +  + I+ GH   VEDV +       F SV DD  L++WD R   TS 
Sbjct: 219 --------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 270
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 271 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 325
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
           +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ 
Sbjct: 326 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKIS 384
Query: 326 DFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
           DF WN ++PW                 +Q+W+M++ +Y  ++
Sbjct: 385 DFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 419

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 161/342 (47%), Gaps = 51/342 (14%)
Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R +PQN  ++AT T S DVL++D    P++    G    +PDL L GHQ 
Sbjct: 129 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQK 186
Query: 88  NAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 146
              + L+  P    Y+LS   D ++ LW I           AT K               
Sbjct: 187 EG-YGLSWNPNLNGYLLSASDDHTICLWDIN----------ATPK--------------- 220
Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSP 205
                   +   +  + I+ GH   VEDV +       F SV DD  L++WD R   TS 
Sbjct: 221 --------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK 272
Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
                 AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   
Sbjct: 273 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDE 327
Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV 325
           +  VQWSP   ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ 
Sbjct: 328 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKIS 386
Query: 326 DFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 367
           DF WN ++PW                 +Q+W+M++ +Y  ++
Sbjct: 387 DFSWNPNEPW-------IICSVSEDNIMQVWQMAENVYNDEE 421

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  159 bits (402), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 155/340 (45%), Gaps = 49/340 (14%)
Query: 28  IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD 87
           I H GEVNR R  PQN  I+AT T S DVL++D    P +    G  N  PDL L GHQ 
Sbjct: 123 INHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQK 180
Query: 88  NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG 147
                        ++LS   D +V LW I               +AG         PK  
Sbjct: 181 EGYGLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK-- 214
Query: 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPV 206
                  +G  V  + I+ GH   VEDV +       F SV DD  L +WD R   TS  
Sbjct: 215 -------EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKP 267
Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266
             +  AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEI 322
Query: 267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 326
             V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ D
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 327 FHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQ 366
           F WN ++PW                  QIW+ ++ IY  +
Sbjct: 382 FSWNPNEPWVICSVSEDNIX-------QIWQXAENIYNDE 414

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 84  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 139
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D  S+  SS+ D
Sbjct: 140 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYD 192
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 193 GLCRIWD 199

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 86  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 141
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 142 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 194
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 195 GLCRIWD 201

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 79  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 134
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 135 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 187
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 188 GLCRIWD 194

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 67  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 122
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 123 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 175
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 176 GLCRIWD 182

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 63  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 118
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 119 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 171
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 172 GLCRIWD 178

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 62  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 171 GLCRIWD 177

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 58  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 113
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 114 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 166
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 167 GLCRIWD 173

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 117/281 (41%), Gaps = 53/281 (18%)
Query: 45  KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104
           K +AT  +   + IWD+E   NR  V+         IL GH+ +  ++L   P+   ++S
Sbjct: 136 KFLATGAEDRLIRIWDIE---NRKIVM---------ILQGHEQDI-YSLDYFPSGDKLVS 182
Query: 105 GGKDKSVVLW-----------SIQDHITSSATDPATAK--SAGSSGSIIKQ-SPKPGDGN 150
           G  D++V +W           SI+D +T+ A  P   K  +AGS    ++    + G   
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 151 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW---------DARV 201
           ++       G      GH+D+V  V F     Q   S   D  + LW         D++ 
Sbjct: 243 ERLDSENESG-----TGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261
             S   +V      D         +D  IL+GS D  V  +D+++      G+P+   +G
Sbjct: 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQG 350
Query: 262 HSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWDYEKVG 297
           H  +V+ V  +   S     +VF + + D    IW Y+K+ 
Sbjct: 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 62  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 171 GLCRIWD 177

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 61  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 116
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 117 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 169
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 170 GLCRIWD 176

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 285
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 286 GLLNIWD 292
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 49/259 (18%)
Query: 45  KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 104
           + +A+ +D   V +W      NR+  L  T       LTGH  +    +A  P    + S
Sbjct: 357 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSVR-GVAFSPDGQTIAS 402
Query: 105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN-DKAADGPSVGPRG 163
              DK+V LW+    +  + T        G S S+   +  P D     A+D  +V    
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDDQTIASASDDKTVK--- 451
Query: 164 IYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH 213
           ++N          GH  +V  V F P   Q   S  DD  + LW+ R G   +++    H
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGH 507
Query: 214 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 273
            + +  V ++P D   I + S D +V++++R        G  +    GHS++V  V +SP
Sbjct: 508 SSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP 559
Query: 274 DKSSVFGSSAEDGLLNIWD 292
           D  ++  S++ D  + +W+
Sbjct: 560 DGQTI-ASASSDKTVKLWN 577

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 218
           V  R     H  +V  V F P   Q   S  DD  + LW+ R G   +++    H + + 
Sbjct: 6   VKERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVW 61
Query: 219 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 278
            V ++P D   I + S D +V++++R        G  +    GHS++V  V +SPD  ++
Sbjct: 62  GVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 279 FGSSAEDGLLNIWD 292
             S+++D  + +W+
Sbjct: 114 -ASASDDKTVKLWN 126

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCV 220
           +  GH+       + P       +   D   +LWD   G    I   +    H AD+  +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 221 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 280
             N L+ N+ ++GS D +VR++D R +TS  V      + GH   +  V++ PD    FG
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FG 265
Query: 281 SSAEDGLLNIWDYEKVGKKVE 301
           + ++DG   ++D  + G +++
Sbjct: 266 TGSDDGTCRLFDM-RTGHQLQ 285

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 81  ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---PATAKSAGSSG 137
           ILTGH  +    L +   E  +++G  D +V +W +      +       A      ++G
Sbjct: 168 ILTGHTGSV---LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 138 SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 197
            ++  S          A    +  R +  GH   V  V F     +   S   D  + +W
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW 281
Query: 198 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 257
           +    T   ++    H   + C+ +    D L+++GS+DN++R++D         G+ + 
Sbjct: 282 NT--STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE------CGACLR 330
Query: 258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
             EGH   V C+++   +     S A DG + +WD
Sbjct: 331 VLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD 362

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 92  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 303
           + P    +  S +EDG L IW+    KV K +  G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 92  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 303
           + P    +  S +EDG L IW+    KV K +  G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 224
           + GH   V  V F P + Q   S G D+ L +W+ + G         AH   + CV ++P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP 162
Query: 225 -LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 283
            LD  +I++G  DN V+++D         G  +   +GH+  V  V  SPD  S+  SS 
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSD 215
Query: 284 EDGLLNIWDYEK 295
           +DG+  +WD  K
Sbjct: 216 KDGVARLWDLTK 227

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 61/229 (26%)
Query: 81  ILTGHQD-----NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS 135
           IL GH D      A F+       P ++SG +DK+V++W +                   
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY------------------ 57
Query: 136 SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC---SVGDDS 192
                          ++  +G    P     GH   V D+      +QE C   S   D 
Sbjct: 58  ---------------EEEQNGYFGIPHKALTGHNHFVSDLAL----SQENCFAISSSWDK 98
Query: 193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 252
            L LWD R GT+   K    H ++++ V ++P D+  IL+  A+  ++++   N+     
Sbjct: 99  TLRLWDLRTGTT--YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLW---NILGECK 152
Query: 253 GSPINKFEGHSAAVLCVQWSPDKSSV---------FGSSAEDGLLNIWD 292
            S   K E HS  V CV++SP   S          F S   DG L +W+
Sbjct: 153 FSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 92  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWD 292
           + P    +  S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 92  ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 211
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 212 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 271 WSPDKSSVFGSSAEDGLLNIWD 292
           + P    +  S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHD-ADLHC 219
           R I N    T+  VTF  +   E  +V     L +WD R  G  P   +    D   LHC
Sbjct: 184 RTIDNADSSTLHAVTFLRTP--EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHC 241
Query: 220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
           VD +P   +++ TG  D  + ++D R  T      P++  + H A +  V + P      
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTM-----PVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 280 GSSAEDGLLNIWDYE----KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 334
            + +EDG L  WD      +      QG R++ + +      A     V+   W ++DP
Sbjct: 297 FTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVIS-SWLSTDP 354

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 160
           Y+LSGG D  +VL+ +++   SS     T K+  S G                 D P V 
Sbjct: 58  YMLSGGSDGVIVLYDLEN---SSRQSYYTCKAVCSIGR----------------DHPDV- 97
Query: 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHC 219
                  H  +VE V + P     F S   D  L +WD   + T+ V   E+     ++ 
Sbjct: 98  -------HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYS 146
Query: 220 VDWNPLDDN--LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
              +P+     L+  G+    V++ D ++      GS  +  +GH   +L V WSP    
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDY 200
Query: 278 VFGSSAEDGLLNIWDYEK 295
           +  +++ D  + +WD  +
Sbjct: 201 ILATASADSRVKLWDVRR 218

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 209 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN------LTSNGVGSPINKF-EG 261
           VE+ H   ++ +D  P++   +L+G +D  + ++D  N       T   V S      + 
Sbjct: 38  VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           H  +V  VQW P  + +F SS+ D  L +WD
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 250
           DS L LW      S         D+  + +DW+   +N I+ G+ DN        N  +N
Sbjct: 44  DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANN 101
Query: 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 310
            + S + +F  HS++V  V+++  + +V  S   +G + IWD  K  +        +NY 
Sbjct: 102 AINS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES------PSNYT 154
Query: 311 AGLFFQHAGHRDKVVDFHWNAS 332
                Q     D+V+   WN S
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQS 176

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 36/191 (18%)
Query: 168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 227
           H+D V  V+   S  Q   S   D C+ +WD  +    V+   +AH A + CV  +P  D
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 228 NLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 286
           ++ L+ S DN + ++D R    ++ +G     +   S A     W P +S VF    E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 287 LLNIWDYEKVGKKVEQG------------PRTTNYPAGL---------------FFQHAG 319
            +++ D +     +               P +  + A L                F+   
Sbjct: 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA 297
Query: 320 HRDKVVDFHWN 330
           HRD V D  W+
Sbjct: 298 HRDFVRDATWS 308

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 212 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 267
            H A +  + W P +DN+I +GS D +V +++   +   G+  P+ +     EGH+  V 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
            V W P   +V  S+  D ++ +WD       +  GP
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP 172

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHC 219
           G   G    +  V F PS      S  DD+ + +++      P  K +     H   +H 
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVHS 195
Query: 220 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSV 278
           V +NP D +L  +   D ++ +++  + T  GV    + K   HS +V  + WSPD + +
Sbjct: 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 279 FGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAGLF 314
             +SA D  + IW+    KV K +  G R  +   G+ 
Sbjct: 255 ASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 53  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
             +S  F +   D L+ IW Y
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 212 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVL 267
            H A +  + W P +DN+I +GS D +V +++   +   G+  P+ +     EGH+  V 
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVG 135
Query: 268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
            V W P   +V  S+  D ++ +WD       +  GP
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 222
           G   GH   V  + +  S   +  S G+D+ + +WDAR       K    H+A +  V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 282
            P   NL+ TG       M  + +  +   G+ +N  +  S  V  + WSP    +  + 
Sbjct: 268 CPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTH 322
Query: 283 A-EDGLLNIWDYEKVG 297
              D  L+IW Y   G
Sbjct: 323 GFPDNNLSIWSYSSSG 338

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
           +   ++L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
           R +   H D V    F     Q   S G D  L ++ A  G   ++ + KAH+ ++ C  
Sbjct: 608 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 664
Query: 222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 279
           ++  DD+ I T SAD  V+++D      +  G  ++ ++ HS  V C  ++ +KS+  + 
Sbjct: 665 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 716
Query: 280 GSSAEDGLLNIWDYEK 295
            + + D  L +WD  +
Sbjct: 717 ATGSNDFFLKLWDLNQ 732

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 93  LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
           +A  P  P  +LS  +DK++++W +    T+                             
Sbjct: 21  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 54
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 210
                    P+    GH   V DV    SS  +F   G  D  L LWD   GT+    V 
Sbjct: 55  ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 102
Query: 211 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             H  D+  V ++  D+  I++GS D ++++++     + GV     + E HS  V CV+
Sbjct: 103 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 155
Query: 271 WSPDKSS-VFGSSAEDGLLNIWD 292
           +SP+ S+ +  S   D L+ +W+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWN 178

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
           RG   GH   V  +   P       S   D  +I+W      +     ++A     H V 
Sbjct: 8   RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 222 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
              +  D    L+GS D ++R++D   LT+   G+   +F GH+  VL V +S D   + 
Sbjct: 68  DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330
            S + D  + +W+   V K   Q    + + + + F        +V   W+
Sbjct: 122 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 171

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
           R +   H D V    F     Q   S G D  L ++ A  G   ++ + KAH+ ++ C  
Sbjct: 615 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 671
Query: 222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 279
           ++  DD+ I T SAD  V+++D      +  G  ++ ++ HS  V C  ++ +KS+  + 
Sbjct: 672 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 723
Query: 280 GSSAEDGLLNIWDYEK 295
            + + D  L +WD  +
Sbjct: 724 ATGSNDFFLKLWDLNQ 739

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 93  LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 151
           +A  P  P  +LS  +DK++++W +    T+                             
Sbjct: 44  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 77
Query: 152 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 210
                    P+    GH   V DV    SS  +F   G  D  L LWD   GT+    V 
Sbjct: 78  ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 125
Query: 211 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             H  D+  V ++  D+  I++GS D ++++++     + GV     + E HS  V CV+
Sbjct: 126 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 178
Query: 271 WSPDKSS-VFGSSAEDGLLNIWD 292
           +SP+ S+ +  S   D L+ +W+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWN 201

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 221
           RG   GH   V  +   P       S   D  +I+W      +     ++A     H V 
Sbjct: 31  RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 222 WNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 279
              +  D    L+GS D ++R++D   LT+   G+   +F GH+  VL V +S D   + 
Sbjct: 91  DVVISSDGQFALSGSWDGTLRLWD---LTT---GTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN 330
            S + D  + +W+   V K   Q    + + + + F        +V   W+
Sbjct: 145 -SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 167 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 225
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 226 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 273
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 274 -DKSSVFGSSAEDGLLNIWDY 293
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD----------ARVGTSP----VIKVEKA 212
           GHE TV  + F PS  Q   S  DD  + +W           A  G+ P    +  +   
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDR---RNLTSNGVGSPINKFEGHSAAVLCV 269
           H   ++ + W  L   L  T   D+++R+F      +          +  + HS  V CV
Sbjct: 251 HSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 270 QWSPDKSSVFGSSAEDGLLNIWDYEK 295
            W+P +  +  S ++DG +  W Y++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223
           +  GH+D V  +T          S  DD+ L +W A  G    ++    H   +    W+
Sbjct: 113 VLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGV----WS 164
Query: 224 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 282
             + DN+I++GS D ++++++         G  I+   GH++ V C+    +K  V GS 
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET------GECIHTLYGHTSTVRCMHLH-EKRVVSGS- 216
Query: 283 AEDGLLNIWDYE 294
             D  L +WD E
Sbjct: 217 -RDATLRVWDIE 227

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWN 223
           YN H   V  V  CP     F S G+D  ++LWD R    P  +++  A D     V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWH 235
Query: 224 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 283
           P  D+    G    +V + + +N  S    +       HS  +  + +S   S    S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 284 EDGLLNIWD 292
           ED  + + D
Sbjct: 290 EDCTVAVLD 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.64
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.57
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.01
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.97
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.86
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.85
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.82
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.8
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.8
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.79
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.77
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.77
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.71
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.7
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.68
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.59
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.57
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.41
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.39
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.28
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.24
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.21
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.16
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.16
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.08
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.05
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.03
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.01
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.88
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.77
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.45
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.42
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.21
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.13
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.02
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.93
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.81
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.67
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.59
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.25
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.22
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.19
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.78
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.44
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.35
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.92
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.43
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.16
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.41
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.3
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.4
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.69
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.66
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	86.48
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	85.62
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.83

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.7e-49  Score=342.69  Aligned_cols=270  Identities=21%  Similarity=0.374  Sum_probs=245.2

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.+|.++|++++|+| ++.+|++|+.||+|+|||+.++            +....+.+|.+ .|.+++|+|++++|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~-~V~~v~~~~~~~~l~  166 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLA  166 (410)
T ss_dssp             SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEE
T ss_pred             eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCC-cEEEEEEcCCCCEEE
Confidence            345678999999999999 8899999999999999999998            67788999998 699999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.|++|++||+.+..                                        .+..+.+|...|.+++|+|++ .
T Consensus       167 sgs~D~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~v~~~p~~-~  205 (410)
T 1vyh_C          167 SCSADMTIKLWDFQGFE----------------------------------------CIRTMHGHDHNVSSVSIMPNG-D  205 (410)
T ss_dssp             EEETTSCCCEEETTSSC----------------------------------------EEECCCCCSSCEEEEEECSSS-S
T ss_pred             EEeCCCeEEEEeCCCCc----------------------------------------eeEEEcCCCCCEEEEEEeCCC-C
Confidence            99999999999997532                                        335677899999999999998 7


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ++++|+.|+.|++||++++.  ....+.+|...|.++.++| ++.+|++|+.||.|++||+++      ..+...+..|.
T Consensus       206 ~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~------~~~~~~~~~h~  276 (410)
T 1vyh_C          206 HIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT------KECKAELREHR  276 (410)
T ss_dssp             EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCCS
T ss_pred             EEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CceeeEecCCC
Confidence            89999999999999999887  6778889999999999999 999999999999999999998      88889999999


Q ss_pred             ceEEEEEEcCC--------------------CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          264 AAVLCVQWSPD--------------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       264 ~~i~~~~~~~~--------------------~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                      ..|.+++|+|+                    +. +|++|+.|+.|++||++..               .++..+.+|...
T Consensus       277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~---------------~~~~~~~~h~~~  340 (410)
T 1vyh_C          277 HVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTG---------------MCLMTLVGHDNW  340 (410)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSC
T ss_pred             ceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCC---------------ceEEEEECCCCc
Confidence            99999999996                    44 5789999999999999875               456777899999


Q ss_pred             eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |++++|+|++.+++        +|+.||+|++||+.      .++++.++.+|...|++++|+|
T Consensus       341 v~~v~~~~~g~~l~--------s~s~D~~i~vwd~~------~~~~~~~~~~h~~~v~~l~~~~  390 (410)
T 1vyh_C          341 VRGVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHK  390 (410)
T ss_dssp             EEEEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECCSSCEEEEEECS
T ss_pred             EEEEEEcCCCCEEE--------EEeCCCeEEEEECC------CCceEEEEcCCCCcEEEEEEcC
Confidence            99999999999887        77777999999998      7888999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-48  Score=325.77  Aligned_cols=271  Identities=21%  Similarity=0.303  Sum_probs=237.5

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|++||++++            .....+..|.. .|.+++|+|++++|++
T Consensus         7 ~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s   72 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV   72 (304)
T ss_dssp             EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred             EeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCC-cEEEEEEeCCCCEEEE
Confidence            34568999999999999 8899999999999999999988            67788888887 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.|++|++||+.++.                                        .+..+.+|...|.+++|+|++ .+
T Consensus        73 ~s~d~~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~  111 (304)
T 2ynn_A           73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY  111 (304)
T ss_dssp             EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred             ECCCCEEEEEECCCCc----------------------------------------EEEEEeCCCCcEEEEEEcCCC-CE
Confidence            9999999999997542                                        346778999999999999998 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-cccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHS  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~  263 (387)
                      +++|+.|++|++||++++.. ....+.+|...|.+++|+|.++.+|++|+.||.|++||++.      ..+...+ ..|.
T Consensus       112 l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~  184 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE  184 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred             EEEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCc
Confidence            99999999999999987752 45667889999999999996678999999999999999987      5555544 4566


Q ss_pred             ceEEEEEEcC--CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          264 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       264 ~~i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ..+..+.|+|  +++ +|++++.|+.|++||++..               .++..+.+|...|..++|+|++++++    
T Consensus       185 ~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~----  244 (304)
T 2ynn_A          185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIII----  244 (304)
T ss_dssp             TCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEE----
T ss_pred             CcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCC---------------ccceeeCCCCCCEEEEEECCCCCEEE----
Confidence            8899999987  556 4679999999999999875               45777889999999999999999776    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +|+.||+|++||+.      +++++.++..|...+++++|+|
T Consensus       245 ----s~s~Dg~i~iWd~~------~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          245 ----SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             ----EEETTSCEEEEETT------TCCEEEEECCSSSSEEEEEECT
T ss_pred             ----EEcCCCeEEEEECC------CCceeeeccCCCccEEEEEECC
Confidence                77777999999999      7889999999999999999887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-48  Score=327.06  Aligned_cols=271  Identities=17%  Similarity=0.301  Sum_probs=237.3

Q ss_pred             eeecCCCcEEEEEecCC---CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           26 KTIIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ...+|.+.|++++|+|.   ++.+|+||+.|++|+|||+....          ......+.+|.. .|.+++|++++.++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~----------~~~~~~l~gh~~-~v~~~~~~~~~~~l   95 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER----------LDLQWSLEGHQL-GVVSVDISHTLPIA   95 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSS-CEEEEEECSSSSEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC----------eeeeeeeccCCC-CEEEEEECCCCCEE
Confidence            44589999999999983   46799999999999999998762          123456889998 69999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|++|++||+.++.                                        .+..+..|...+.+++|+|++ 
T Consensus        96 ~s~s~D~~i~lWd~~~~~----------------------------------------~~~~~~~~~~~~~~~~~spdg-  134 (321)
T 3ow8_A           96 ASSSLDAHIRLWDLENGK----------------------------------------QIKSIDAGPVDAWTLAFSPDS-  134 (321)
T ss_dssp             EEEETTSEEEEEETTTTE----------------------------------------EEEEEECCTTCCCCEEECTTS-
T ss_pred             EEEeCCCcEEEEECCCCC----------------------------------------EEEEEeCCCccEEEEEECCCC-
Confidence            999999999999997643                                        235566778889999999999 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .+|++++.||.|++||+++++  ....+..|...|.+++|+| ++++|++|+.||.|++||+++      ++.+..+.+|
T Consensus       135 ~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h  205 (321)
T 3ow8_A          135 QYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGH  205 (321)
T ss_dssp             SEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCC
T ss_pred             CEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEccc
Confidence            889999999999999999887  5666778889999999999 999999999999999999998      8899999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ..+|.+++|+|++++ |++++.|+.|++||++..               .....+.+|...|.+++|+|++.+++     
T Consensus       206 ~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~sp~~~~l~-----  264 (321)
T 3ow8_A          206 AMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHA---------------NLAGTLSGHASWVLNVAFCPDDTHFV-----  264 (321)
T ss_dssp             SSCCCEEEECTTSCE-EEEECTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSEEE-----
T ss_pred             CCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCc---------------ceeEEEcCCCCceEEEEECCCCCEEE-----
Confidence            999999999999995 679999999999999874               34566789999999999999999877     


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                         +|+.|++|++||+.      +++++.++.+|.+.|++++|+|
T Consensus       265 ---s~s~D~~v~iwd~~------~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          265 ---SSSSDKSVKVWDVG------TRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             ---EEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECT
T ss_pred             ---EEeCCCcEEEEeCC------CCEEEEEEcCCCCcEEEEEECC
Confidence               66777999999999      7889999999999999999987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.7e-47  Score=322.60  Aligned_cols=277  Identities=16%  Similarity=0.298  Sum_probs=239.4

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++            .....+..|.. .|.+++|+|++++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~  111 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNY  111 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECSSS-CEEEEEECTTSSE
T ss_pred             hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CcceEeecCCc-cEEEEEECCCCCE
Confidence            34456778999999999999 8899999999999999999888            67778888887 6999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++|+.|+.|++|++.+...                                    .......+.+|...|.++.|++++
T Consensus       112 l~s~~~d~~v~iw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~  155 (340)
T 1got_B          112 VACGGLDNICSIYNLKTREG------------------------------------NVRVSRELAGHTGYLSCCRFLDDN  155 (340)
T ss_dssp             EEEEETTCEEEEEETTTCSB------------------------------------SCEEEEEEECCSSCEEEEEEEETT
T ss_pred             EEEEeCCCeEEEEECccCCC------------------------------------cceeEEEecCCCccEEEEEECCCC
Confidence            99999999999999875321                                    112235677899999999999987


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                        .+++++.|+.|++||+++++  ....+.+|...|.+++|+| +++++++|+.||.|++||+++      +.++..+.+
T Consensus       156 --~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~------~~~~~~~~~  224 (340)
T 1got_B          156 --QIVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTG  224 (340)
T ss_dssp             --EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECC
T ss_pred             --cEEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC------CeeEEEEcC
Confidence              48899999999999999887  6777889999999999999 999999999999999999998      889999999


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...|.+++|+|++.+ |++++.||.|++||++.....             .......+...|++++|+|++++++    
T Consensus       225 h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~----  286 (340)
T 1got_B          225 HESDINAICFFPNGNA-FATGSDDATCRLFDLRADQEL-------------MTYSHDNIICGITSVSFSKSGRLLL----  286 (340)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE-------------EEECCTTCCSCEEEEEECTTSSEEE----
T ss_pred             CcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEE-------------EEEccCCcccceEEEEECCCCCEEE----
Confidence            9999999999999985 679999999999999874221             1111223445799999999999887    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +|+.||.|++||+.      .++.+..+.+|.+.|.+++|+|
T Consensus       287 ----~g~~d~~i~vwd~~------~~~~~~~~~~h~~~v~~~~~s~  322 (340)
T 1got_B          287 ----AGYDDFNCNVWDAL------KADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             ----EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred             ----EECCCCeEEEEEcc------cCcEeeEeecCCCcEEEEEEcC
Confidence                67777999999998      6778889999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.7e-47  Score=322.10  Aligned_cols=255  Identities=19%  Similarity=0.301  Sum_probs=211.8

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ....|...|.+++|+| ++ .|++|+.||+|+|||+++++...        .....+.+|.+ .|++++|+|+|++|++|
T Consensus        77 ~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~H~~-~V~~v~~spdg~~l~sg  145 (344)
T 4gqb_B           77 AGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLI--------VSKFCKYEHDD-IVSTVSVLSSGTQAVSG  145 (344)
T ss_dssp             EEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCE--------EEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred             eeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCcee--------EeeccccCCCC-CEEEEEECCCCCEEEEE
Confidence            4456788999999999 54 67899999999999999883221        12234568887 79999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|++|++||++++.                                        .+..+.+|...|.+++|+|++..+|
T Consensus       146 s~d~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          146 SKDICIKVWDLAQQV----------------------------------------VLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             ETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             eCCCeEEEEECCCCc----------------------------------------EEEEEcCcCCceEEEEecCCCCCce
Confidence            999999999997542                                        3467889999999999999987789


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++++.|+.|++||+++++.........+...+++++|+|.++++|++|+.||.|++||+++      ++++.++.+|...
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------~~~~~~~~~h~~~  259 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------TSCVLSSAVHSQC  259 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSC
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC------CcEEEEEcCCCCC
Confidence            9999999999999998873222223456678999999996678899999999999999998      8899999999999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |++++|+|++..+||+|+.|+.|+|||++..                .+..+.+|.+.|++++|+|+++++++++|.   
T Consensus       260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~----------------~~~~~~~H~~~V~~v~~sp~~~~llas~s~---  320 (344)
T 4gqb_B          260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLS----------------ELFRSQAHRDFVRDATWSPLNHSLLTTVGW---  320 (344)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTCC----------------EEEEECCCSSCEEEEEECSSSTTEEEEEET---
T ss_pred             EEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcC---
Confidence            9999999998767889999999999999874                234568999999999999999988875554   


Q ss_pred             CCCCCceEEEEecCC
Q 016547          346 STGGGGTLQIWRMSD  360 (387)
Q Consensus       346 tg~~dg~i~iw~~~~  360 (387)
                          ||+|++|++..
T Consensus       321 ----D~~v~~w~v~~  331 (344)
T 4gqb_B          321 ----DHQVVHHVVPT  331 (344)
T ss_dssp             ----TSCEEEEECCC
T ss_pred             ----CCeEEEEECCC
Confidence                59999999983

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.3e-46  Score=316.78  Aligned_cols=280  Identities=17%  Similarity=0.298  Sum_probs=238.2

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.+|.+.|++++|+| ++++|+||+.||+|++||..+.            +....+..|.. .|.+++|+|++.+|
T Consensus        56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~~~-~v~~~~~sp~g~~l  121 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT------------NKEHAVTMPCT-WVMACAYAPSGCAI  121 (354)
T ss_dssp             EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECSSS-CCCEEEECTTSSEE
T ss_pred             EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CcceEEecCCC-CEEEEEECCCCCEE
Confidence            3456678999999999999 8899999999999999999887            56677778876 68999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|+.+++|++......                                  ........+..|...|.+++|+|++ 
T Consensus       122 asg~~d~~i~v~~~~~~~~~----------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~-  166 (354)
T 2pbi_B          122 ACGGLDNKCSVYPLTFDKNE----------------------------------NMAAKKKSVAMHTNYLSACSFTNSD-  166 (354)
T ss_dssp             EEESTTSEEEEEECCCCTTC----------------------------------CSGGGCEEEEECSSCEEEEEECSSS-
T ss_pred             EEeeCCCCEEEEEEeccccc----------------------------------cccccceeeeccCCcEEEEEEeCCC-
Confidence            99999999999998643211                                  0112235567899999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      ..+++++.|++|++||+++++  ....+.+|...|.+++++|. ++++|++|+.||.|++||+++      ++++..+.+
T Consensus       167 ~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~------~~~~~~~~~  238 (354)
T 2pbi_B          167 MQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS------GQCVQAFET  238 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT------CCEEEEECC
T ss_pred             CEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC------CcEEEEecC
Confidence            789999999999999999887  67788899999999999873 368999999999999999998      889999999


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...|.+++|+|++.. |++++.|+.|++||++.....             .......+...+.+++|+|++.+++    
T Consensus       239 h~~~v~~v~~~p~~~~-l~s~s~D~~v~lwd~~~~~~~-------------~~~~~~~~~~~~~~~~~s~~g~~l~----  300 (354)
T 2pbi_B          239 HESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREV-------------AIYSKESIIFGASSVDFSLSGRLLF----  300 (354)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEE-------------EEECCTTCCSCEEEEEECTTSSEEE----
T ss_pred             CCCCeEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEE-------------EEEcCCCcccceeEEEEeCCCCEEE----
Confidence            9999999999999985 679999999999999874221             1111223345789999999999877    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +|+.|++|++||+.      +++.+..+.+|.+.|++++|+|
T Consensus       301 ----~g~~d~~i~vwd~~------~~~~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          301 ----AGYNDYTINVWDVL------KGSRVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             ----EEETTSCEEEEETT------TCSEEEEECCCSSCEEEEEECT
T ss_pred             ----EEECCCcEEEEECC------CCceEEEEECCCCcEEEEEECC
Confidence                66777999999998      6888888999999999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.8e-46  Score=316.46  Aligned_cols=300  Identities=17%  Similarity=0.307  Sum_probs=231.9

Q ss_pred             eeeeecCCC-cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           24 KHKTIIHPG-EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        24 ~~~~~~h~~-~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ...+.+|.+ .|++++|+| ++++||+|+.|++|+|||+++....         .......+|.. .|.+++|+|++++|
T Consensus         8 ~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~---------~~~~~~~~h~~-~v~~~~~sp~g~~l   76 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI---------CKSVLSEGHQR-TVRKVAWSPCGNYL   76 (345)
T ss_dssp             EEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE---------EEEEECSSCSS-CEEEEEECTTSSEE
T ss_pred             eeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce---------eeeeeccccCC-cEEEEEECCCCCEE
Confidence            445568987 999999999 8999999999999999999876210         01122367887 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.|++|++|++....                                      ...+..+.+|...|.+++|+|++ 
T Consensus        77 ~s~s~D~~v~iw~~~~~~--------------------------------------~~~~~~~~~h~~~v~~v~~sp~~-  117 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDD--------------------------------------FECVTTLEGHENEVKSVAWAPSG-  117 (345)
T ss_dssp             EEEETTSCEEEEEECCC---------------------------------------EEEEEEECCCSSCEEEEEECTTS-
T ss_pred             EEEECCCcEEEEEccCCC--------------------------------------eEEEEEccCCCCCceEEEEeCCC-
Confidence            999999999999986431                                      12336678999999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          183 QEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      ++|++++.|+.|++||++.... .....+..|...|.+++|+| ++.+|++++.|+.|++||.+...    ..+...+.+
T Consensus       118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~  192 (345)
T 3fm0_A          118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEG  192 (345)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECC
T ss_pred             CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecC
Confidence            8999999999999999987653 23556778999999999999 99999999999999999998721    235678899


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEEEEe
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      |...|.+++|+|++++ |++++.|+.|++||....................++..+.+ |...|.+++|+|++..++   
T Consensus       193 h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~---  268 (345)
T 3fm0_A          193 HESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA---  268 (345)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE---
T ss_pred             CCCceEEEEECCCCCE-EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE---
Confidence            9999999999999995 67999999999999755332211111111111233444555 888999999999999877   


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccc--cch-hhhhhhccCceEEEeeecC
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRP--QDE-VLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~--~~~-~~~~~~~~~~~v~~~~f~P  387 (387)
                           +++.|+.|++|+........  ... ......+|...|++|+|+|
T Consensus       269 -----s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          269 -----TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             -----EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             -----EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence                 66667999999987421100  001 1223468999999999998

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.2e-46  Score=317.01  Aligned_cols=281  Identities=19%  Similarity=0.260  Sum_probs=219.6

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      ..|...|.+++|+| +|++|++++ |+++++||................... ....|.. .|.+++|+|++ .|++|+.
T Consensus        27 ~~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           27 ACMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCS-AGVQTEA-GVADLTWVGER-GILVASD  101 (344)
T ss_dssp             SSCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCS-EEEEESS-CEEEEEEETTT-EEEEEET
T ss_pred             ccccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceee-eeeccCC-CEEEEEEeCCC-eEEEEEC
Confidence            35788999999999 889999887 678888874321100000001111122 2233444 59999999985 6889999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      ||+|++||++++.....                                    ....+.+|.+.|++++|+|++ ++|++
T Consensus       102 dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~H~~~V~~v~~spdg-~~l~s  144 (344)
T 4gqb_B          102 SGAVELWELDENETLIV------------------------------------SKFCKYEHDDIVSTVSVLSSG-TQAVS  144 (344)
T ss_dssp             TSEEEEEEECTTSSCEE------------------------------------EEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred             CCEEEEEeccCCCceeE------------------------------------eeccccCCCCCEEEEEECCCC-CEEEE
Confidence            99999999986533211                                    113356899999999999999 89999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec--cccce
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAA  265 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~~  265 (387)
                      |+.|+.|++||+++++  .+..+.+|...|++++|+|.+..+|++++.||.|++||+++      +++...+.  .+...
T Consensus       145 gs~d~~i~iwd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~~~~~~~  216 (344)
T 4gqb_B          145 GSKDICIKVWDLAQQV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC------PKPASQIGCSAPGYL  216 (344)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS------SSCEEECC----CCC
T ss_pred             EeCCCeEEEEECCCCc--EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc------cceeeeeecceeecc
Confidence            9999999999999887  67888899999999999993346889999999999999998      77777764  45567


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      +.+++|+|++..+|++|+.||.|++||+++.               +++..+.+|...|++++|+|++..++++      
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------------~~~~~~~~h~~~v~~v~fsp~g~~~las------  275 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKST---------------SCVLSSAVHSQCVTGLVFSPHSVPFLAS------  275 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC-----------------CCEEEECCSSCEEEEEECSSSSCCEEE------
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCC---------------cEEEEEcCCCCCEEEEEEccCCCeEEEE------
Confidence            9999999987767889999999999999875               3466778999999999999998766664      


Q ss_pred             CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                       |+.|++|+|||+.      +++++ .+.+|.+.|++++|+|
T Consensus       276 -gs~D~~i~vwd~~------~~~~~-~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          276 -LSEDCSLAVLDSS------LSELF-RSQAHRDFVRDATWSP  309 (344)
T ss_dssp             -EETTSCEEEECTT------CCEEE-EECCCSSCEEEEEECS
T ss_pred             -EeCCCeEEEEECC------CCcEE-EEcCCCCCEEEEEEeC
Confidence             4555999999998      56554 5789999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.6e-46  Score=322.41  Aligned_cols=288  Identities=17%  Similarity=0.341  Sum_probs=235.4

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++            +....+..|.. .|.+++|+|++++|
T Consensus        58 ~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~------------~~~~~~~~h~~-~v~~~~~s~~g~~l  123 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS------------QKTHAIKLHCP-WVMECAFAPNGQSV  123 (380)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT------------EEEEEEECCCT-TCCCCEECTTSSEE
T ss_pred             EeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------ccceEEecCCC-CEEEEEECCCCCEE
Confidence            3456678999999999999 8899999999999999999888            67788899987 68999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.|+.|++||+.......                                 ........+.+|.+.|.++.|.|+++
T Consensus       124 as~~~d~~v~iw~~~~~~~~~---------------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~  170 (380)
T 3iz6_a          124 ACGGLDSACSIFNLSSQADRD---------------------------------GNMPVSRVLTGHKGYASSCQYVPDQE  170 (380)
T ss_dssp             EECCSSSCCEEEECCCCSSCC---------------------------------CSSTTCCBCCCCSSCCCCCBCCSSSS
T ss_pred             EEeeCCCcEEEEECCCCcccc---------------------------------CCccceeeccCCCcceEEEEEecCCC
Confidence            999999999999997532110                                 01122356788999999999999876


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      ..|++|+.|++|++||+++++  ....+     .+|...|.++++++.++++|++|+.||.|++||++..     ...+.
T Consensus       171 ~~l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~  243 (380)
T 3iz6_a          171 TRLITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----SRAVR  243 (380)
T ss_dssp             SCEEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----CCCCE
T ss_pred             CEEEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----CcceE
Confidence            789999999999999999887  34443     5788999999998768899999999999999999852     57888


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      .+.+|...|.+++|+|++++ |++++.||.|++||++............        .....+...|++++|+|++++++
T Consensus       244 ~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~g~~l~  314 (380)
T 3iz6_a          244 TYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREP--------DRNDNELPIVTSVAFSISGRLLF  314 (380)
T ss_dssp             EECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEEEECCCC--------SSSCCSSCSCSEEEECSSSSEEE
T ss_pred             EECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEEEecccc--------cccccccCceEEEEECCCCCEEE
Confidence            99999999999999999995 6799999999999999853221100000        00012234589999999999888


Q ss_pred             EEecCCCCCCCCCceEEEEecCCCcccccchhhhhh----hccCceEEEeeecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL----EKFKAHVISCTSKP  387 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~~v~~~~f~P  387 (387)
                              +|+.||.|++||+.      .++.+..+    .+|.+.|++++|+|
T Consensus       315 --------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          315 --------AGYSNGDCYVWDTL------LAEMVLNLGTLQNSHEGRISCLGLSS  354 (380)
T ss_dssp             --------EECTTSCEEEEETT------TCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred             --------EEECCCCEEEEECC------CCceEEEEecccCCCCCceEEEEECC
Confidence                    77778999999998      56655554    68999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-45  Score=315.73  Aligned_cols=275  Identities=16%  Similarity=0.267  Sum_probs=218.8

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecC------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTD------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      ..|.+.|++++|+| +|++||+|+.      |+.|++|+..++....        .......+|.. .|++++|+|++++
T Consensus        39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------~~~~~~~~~~~-~V~~~~~s~d~~~  108 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------SLCTAGVQTEA-GVTDVAWVSEKGI  108 (357)
T ss_dssp             -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CG--------GGCSEEEECSS-CEEEEEEETTTEE
T ss_pred             ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcce--------eEecccCCCCC-CEEEEEEcCCCCE
Confidence            46999999999999 9999999997      7789999987764322        22334556776 5999999999865


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                       ++++.||+|++||+.++.....                                    ......+|...|++++|+|++
T Consensus       109 -l~~s~dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~h~~~V~~v~~spdg  151 (357)
T 4g56_B          109 -LVASDSGAVELWEILEKESLLV------------------------------------NKFAKYEHDDIVKTLSVFSDG  151 (357)
T ss_dssp             -EEEETTSCEEEC--------CC------------------------------------CCEEECCCSSCEEEEEECSSS
T ss_pred             -EEEECCCEEEEeeccccceeEE------------------------------------EeeccCCCCCCEEEEEECCCC
Confidence             4567799999999986532211                                    113445799999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe--
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF--  259 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--  259 (387)
                       .+|++++.|+.|++||+++++  ....+..|...|++++|+|....++++++.||.|++||+++      ++++..+  
T Consensus       152 -~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~------~~~~~~~~~  222 (357)
T 4g56_B          152 -TQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK------PKPATRIDF  222 (357)
T ss_dssp             -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS------SSCBCBCCC
T ss_pred             -CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC------Cceeeeeee
Confidence             889999999999999999887  67788899999999999993346899999999999999998      5555443  


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      ..|...+.+++|+|++..+|++|+.|+.|++||++..               .....+.+|...|++++|+|++..++++
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---------------~~~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---------------DSAQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---------------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCC---------------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence            4567789999999997778899999999999999875               3356678899999999999998776664


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +       +.|++|+|||++      +++++..+ +|.+.|++|+|+|
T Consensus       288 g-------s~D~~i~iwd~~------~~~~~~~~-~H~~~V~~vafsP  321 (357)
T 4g56_B          288 I-------SEDCTVAVLDAD------FSEVFRDL-SHRDFVTGVAWSP  321 (357)
T ss_dssp             E-------ETTSCEEEECTT------SCEEEEEC-CCSSCEEEEEECS
T ss_pred             E-------eCCCEEEEEECC------CCcEeEEC-CCCCCEEEEEEeC
Confidence            4       455999999998      67776654 7999999999998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-44  Score=302.83  Aligned_cols=272  Identities=23%  Similarity=0.398  Sum_probs=233.0

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++            +....+.+|.. .|.+++|+|++++
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~   79 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG------------KFEKTISGHKL-GISDVAWSSDSNL   79 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSE
T ss_pred             eeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc------------ccchhhccCCC-ceEEEEEcCCCCE
Confidence            33456678999999999999 8899999999999999999887            66778889987 6999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++++.|+.|++||++++.                                        .+..+.+|...|.+++|+|++
T Consensus        80 l~s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~  119 (312)
T 4ery_A           80 LVSASDDKTLKIWDVSSGK----------------------------------------CLKTLKGHSNYVFCCNFNPQS  119 (312)
T ss_dssp             EEEEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS
T ss_pred             EEEECCCCEEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEcCCC
Confidence            9999999999999997532                                        336678899999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  260 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-  260 (387)
                       .++++++.|+.|++||+++++  ....+..|...|.+++|+| ++++|++++.||.|++||+++      ++.+..+. 
T Consensus       120 -~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~  189 (312)
T 4ery_A          120 -NLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLID  189 (312)
T ss_dssp             -SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECC
T ss_pred             -CEEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEec
Confidence             889999999999999999887  6777888999999999999 999999999999999999998      77776654 


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee--EEEEc-cCCCeEE
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWN-ASDPWTV  337 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~-~~~~~l~  337 (387)
                      .+...+..++|+|++++ +++++.|+.|++||++..               ..+..+.+|...+.  ...++ +++.+++
T Consensus       190 ~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
T 4ery_A          190 DDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKG---------------KCLKTYTGHKNEKYCIFANFSVTGGKWIV  253 (312)
T ss_dssp             SSCCCEEEEEECTTSSE-EEEEETTTEEEEEETTTT---------------EEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred             cCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------cEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence            45678999999999996 568999999999999875               33555566665432  23444 4555555


Q ss_pred             EEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                              +|+.||.|++||+.      +++++.++.+|.+.|.+++|+|
T Consensus       254 --------sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~~~~~~p  289 (312)
T 4ery_A          254 --------SGSEDNLVYIWNLQ------TKEIVQKLQGHTDVVISTACHP  289 (312)
T ss_dssp             --------ECCTTSCEEEEETT------TCCEEEEECCCSSCEEEEEECS
T ss_pred             --------EECCCCEEEEEECC------CchhhhhhhccCCcEEEEeecC
Confidence                    77788999999999      7888999999999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-44  Score=310.31  Aligned_cols=255  Identities=22%  Similarity=0.340  Sum_probs=207.1

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ....+|.+.|.+++|+| ++.+ ++++.||+|+|||+.+++...        .......+|.+ .|++++|+|++++|++
T Consensus        88 ~~~~~~~~~V~~~~~s~-d~~~-l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~-~V~~v~~spdg~~l~s  156 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVS-EKGI-LVASDSGAVELWEILEKESLL--------VNKFAKYEHDD-IVKTLSVFSDGTQAVS  156 (357)
T ss_dssp             SEEEECSSCEEEEEEET-TTEE-EEEETTSCEEEC--------C--------CCCEEECCCSS-CEEEEEECSSSSEEEE
T ss_pred             cccCCCCCCEEEEEEcC-CCCE-EEEECCCEEEEeeccccceeE--------EEeeccCCCCC-CEEEEEECCCCCEEEE
Confidence            34567999999999999 6655 466789999999998873221        22344567887 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.|++|++||++++.                                        .+..+.+|...|++++|+|+++.+
T Consensus       157 gs~dg~v~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          157 GGKDFSVKVWDLSQKA----------------------------------------VLKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTCSSC
T ss_pred             EeCCCeEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEccCCCce
Confidence            9999999999997543                                        336678899999999999998678


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++++.||.|++||+++++.........+...+++++|+|..+.+|++|+.|+.|++||+++      ++++..+.+|..
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~  270 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQ  270 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSS
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEeccce
Confidence            99999999999999998874434445567788999999995567899999999999999998      889999999999


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc-CCCeEEEEecCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVVSVSDD  343 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~s~s~d  343 (387)
                      .|++++|+|++..+||+++.|+.|+|||++..               + +....+|.+.|++++|+| ++.+|+      
T Consensus       271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~-~~~~~~H~~~V~~vafsP~d~~~l~------  328 (357)
T 4g56_B          271 NITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------E-VFRDLSHRDFVTGVAWSPLDHSKFT------  328 (357)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------E-EEEECCCSSCEEEEEECSSSTTEEE------
T ss_pred             eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------c-EeEECCCCCCEEEEEEeCCCCCEEE------
Confidence            99999999998767889999999999999874               2 233458999999999999 555555      


Q ss_pred             CCCCCCCceEEEEecCC
Q 016547          344 CDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~  360 (387)
                        |||.||+|++|++..
T Consensus       329 --s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          329 --TVGWDHKVLHHHLPS  343 (357)
T ss_dssp             --EEETTSCEEEEECC-
T ss_pred             --EEcCCCeEEEEECCC
Confidence              566669999999983

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-44  Score=302.93  Aligned_cols=246  Identities=19%  Similarity=0.357  Sum_probs=221.1

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+.+|...|.+++|++ ++.++++|+.|++|++||+.++            +.+..+..|.. .+.+++|+|++++|+++
T Consensus        75 ~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~------------~~~~~~~~~~~-~~~~~~~spdg~~l~~g  140 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENG------------KQIKSIDAGPV-DAWTLAFSPDSQYLATG  140 (321)
T ss_dssp             EECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCTT-CCCCEEECTTSSEEEEE
T ss_pred             eeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CEEEEEeCCCc-cEEEEEECCCCCEEEEE
Confidence            4568999999999999 8899999999999999999988            66777888876 57899999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.||.|++|+++++.                                        ....+..|...|.+++|+|++ ++|
T Consensus       141 ~~dg~v~i~~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~spdg-~~l  179 (321)
T 3ow8_A          141 THVGKVNIFGVESGK----------------------------------------KEYSLDTRGKFILSIAYSPDG-KYL  179 (321)
T ss_dssp             CTTSEEEEEETTTCS----------------------------------------EEEEEECSSSCEEEEEECTTS-SEE
T ss_pred             cCCCcEEEEEcCCCc----------------------------------------eeEEecCCCceEEEEEECCCC-CEE
Confidence            999999999997542                                        224566788899999999999 899


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++++.||.|++||+++++  ....+.+|...|++++|+| ++++|++|+.||.|++||++.      ...+..+.+|...
T Consensus       180 asg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~  250 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH------ANLAGTLSGHASW  250 (321)
T ss_dssp             EEEETTSCEEEEETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTT------CCEEEEECCCSSC
T ss_pred             EEEcCCCeEEEEECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCC------cceeEEEcCCCCc
Confidence            999999999999999887  6777889999999999999 999999999999999999998      8888999999999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |.+++|+|++++ |++++.|+.|++||+++.               .++..+.+|...|.+++|+|++.+|+        
T Consensus       251 v~~~~~sp~~~~-l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l~--------  306 (321)
T 3ow8_A          251 VLNVAFCPDDTH-FVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKIV--------  306 (321)
T ss_dssp             EEEEEECTTSSE-EEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEEE--------
T ss_pred             eEEEEECCCCCE-EEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEEE--------
Confidence            999999999996 679999999999999875               45677889999999999999999877        


Q ss_pred             CCCCCceEEEEecC
Q 016547          346 STGGGGTLQIWRMS  359 (387)
Q Consensus       346 tg~~dg~i~iw~~~  359 (387)
                      +++.||+|++||+.
T Consensus       307 s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          307 SVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTCCEEEEECC
T ss_pred             EEeCCCeEEEEeCC
Confidence            67777999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.5e-44  Score=309.35  Aligned_cols=282  Identities=21%  Similarity=0.356  Sum_probs=227.1

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-----------------
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----------------   86 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-----------------   86 (387)
                      ..+.++|.+.|.+++|+| ++++||+|+ ++.+++|++.+++.            ...+..|.                 
T Consensus        57 ~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~------------~~~l~~~~~~~~~~~~~~~~~~~~~  122 (393)
T 1erj_A           57 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL------------VARLSDDSAANKDPENLNTSSSPSS  122 (393)
T ss_dssp             EEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE------------EEEECC-----------------CC
T ss_pred             eEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCE------------EEEecCccccccccccccccccCCC
Confidence            345568999999999999 889999986 68999999998843            33333222                 


Q ss_pred             CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547           87 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  166 (387)
Q Consensus        87 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (387)
                      ...|.+++|+|++++|++|+.|+.|++||+.++.                                        .+..+.
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~----------------------------------------~~~~~~  162 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK----------------------------------------IVMILQ  162 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------------------------------------EEEEEC
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------------------------------------EEEEEc
Confidence            1248999999999999999999999999997532                                        235678


Q ss_pred             CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      +|...|.+++|+|++ ..|++++.|+.|++||+++++  ....+ .+...+.+++|+|.++++|++|+.||.|++||+++
T Consensus       163 ~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          163 GHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             cCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            899999999999998 789999999999999999876  33333 46678999999997789999999999999999988


Q ss_pred             CCCCCCCCceEEe-------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          247 LTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       247 ~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                            +..+..+       .+|...|.+++|+|++++ |++++.|+.|++||++.........   ......+...+.+
T Consensus       239 ------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~---~~~~~~~~~~~~~  308 (393)
T 1erj_A          239 ------GFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSK---TPNSGTCEVTYIG  308 (393)
T ss_dssp             ------CCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC------------------CEEEEEEC
T ss_pred             ------CcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECCCCCCccccc---CCCCCcceEEEec
Confidence                  6666665       578999999999999996 5799999999999998743321110   0011234566789


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |...|.+++|+|++.+++        +|+.||.|++||+.      +++++..+.+|.+.|.+++|+|
T Consensus       309 h~~~v~~~~~~~~~~~l~--------sgs~D~~v~iwd~~------~~~~~~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          309 HKDFVLSVATTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             CSSCEEEEEECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECS
T ss_pred             ccCcEEEEEECCCCCEEE--------EEeCCCeEEEEECC------CCeEEEEECCCCCCEEEEEecC
Confidence            999999999999999877        77777999999999      7888899999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.4e-43  Score=295.89  Aligned_cols=258  Identities=19%  Similarity=0.304  Sum_probs=212.0

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~  103 (387)
                      .+.+|.+.|++++|+| ++++||+|+.|++|+|||+...          ..+.+..+.+|.+ .|++++|+++  +++|+
T Consensus         4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~----------~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSS----------CBCCCEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred             eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCC----------CcEEEEEEccccC-CeEEEEecCCCcCCEEE
Confidence            4458999999999999 8999999999999999999753          1156788999998 7999999874  89999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  181 (387)
                      +|+.|++|++||++++..                                      ..+..+..|...|.+++|+|+  +
T Consensus        72 s~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g  113 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG  113 (297)
T ss_dssp             EEETTTEEEEEEBSSSCB--------------------------------------CCCEEECCCSSCEEEEEECCGGGC
T ss_pred             EEcCCCEEEEEEcCCCce--------------------------------------EEEEEeecCCCceeEEEeCcCCCC
Confidence            999999999999975321                                      122456789999999999997  5


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC-------------CCeEEEeeCCCeEEEEEeccCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-------------DNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                       .+|++++.|+.|++||++.........+.+|...|.+++|+| +             +++|++|+.|+.|++||++.  
T Consensus       114 -~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~--  189 (297)
T 2pm7_B          114 -PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS--  189 (297)
T ss_dssp             -SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTSCEEEEEEET--
T ss_pred             -cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcC--
Confidence             789999999999999998764323456678999999999999 5             57999999999999999987  


Q ss_pred             CCCCCC----ceEEeccccceEEEEEEcCCC--CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547          249 SNGVGS----PINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  322 (387)
Q Consensus       249 ~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (387)
                          ..    ....+.+|...|.+++|+|++  ..+||+++.|+.|+|||++.......          ........|..
T Consensus       190 ----~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~----------~~~~~~~~~~~  255 (297)
T 2pm7_B          190 ----DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPD  255 (297)
T ss_dssp             ----TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSS
T ss_pred             ----CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc----------eeeeecccCCC
Confidence                44    566788999999999999986  34678999999999999986321100          01111246788


Q ss_pred             CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .|.+++|+|++++|+        +++.||+|++|+..
T Consensus       256 ~v~~~~~s~~g~~la--------s~~~D~~v~lw~~~  284 (297)
T 2pm7_B          256 VLWRASWSLSGNVLA--------LSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEEECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred             cEEEEEECCCCCEEE--------EEcCCCcEEEEEEC
Confidence            999999999999877        66777999999987

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-44  Score=313.95  Aligned_cols=247  Identities=20%  Similarity=0.394  Sum_probs=220.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|++||+.+.            +.+..+.+|.. .|.+++|+|++++|++
T Consensus       144 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~------------~~~~~~~~h~~-~V~~v~~~p~~~~l~s  209 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIMPNGDHIVS  209 (410)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEECSSSSEEEE
T ss_pred             EEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC------------ceeEEEcCCCC-CEEEEEEeCCCCEEEE
Confidence            34568999999999999 8899999999999999999887            66777889987 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.|++|++||+.++.                                        .+..+.+|...|.++.++|++ .+
T Consensus       210 ~s~D~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~g-~~  248 (410)
T 1vyh_C          210 ASRDKTIKMWEVQTGY----------------------------------------CVKTFTGHREWVRMVRPNQDG-TL  248 (410)
T ss_dssp             EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECTTS-SE
T ss_pred             EeCCCeEEEEECCCCc----------------------------------------EEEEEeCCCccEEEEEECCCC-CE
Confidence            9999999999997542                                        336678899999999999998 89


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--------------------CCeEEEeeCCCeEEEEEe
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--------------------DNLILTGSADNSVRMFDR  244 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~l~~~~~dg~i~~~d~  244 (387)
                      +++|+.|+.|++||+++++  ....+..|...|.+++|+| +                    +.+|++|+.||.|++||+
T Consensus       249 l~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          249 IASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             EEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECC-SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EEEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcC-cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999999887  6677889999999999998 5                    568999999999999999


Q ss_pred             ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  324 (387)
                      ++      +.++..+.+|...|.+++|+|++++ |++++.|+.|++||+...               .++..+.+|...|
T Consensus       326 ~~------~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~~v  383 (410)
T 1vyh_C          326 ST------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTLNAHEHFV  383 (410)
T ss_dssp             TT------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEEECCSSCE
T ss_pred             CC------CceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------ceEEEEcCCCCcE
Confidence            98      8899999999999999999999996 569999999999999874               3456678999999


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++++|+|++++++        ||+.||+|++|+++
T Consensus       384 ~~l~~~~~~~~l~--------sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          384 TSLDFHKTAPYVV--------TGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEECSSSSCEE--------EEETTSEEEEEC--
T ss_pred             EEEEEcCCCCEEE--------EEeCCCcEEEEeCC
Confidence            9999999999887        77778999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-43  Score=297.65  Aligned_cols=274  Identities=16%  Similarity=0.302  Sum_probs=226.0

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.+|.+.|++++|+|.++++|++|+.|++|++|++.......       ..++..+.+|.. .|.+++|+|++++|+
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~~~~s~dg~~l~   81 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-------GVPVRSFKGHSH-IVQDCTLTADGAYAL   81 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-------EEEEEEEECCSS-CEEEEEECTTSSEEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-------cccceEEeCCcc-cEEEEEECCCCCEEE
Confidence            445668999999999999667899999999999999997542111       135678899998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.|++|++||+.++.                                        .+..+.+|...|.+++|+|++ .
T Consensus        82 s~s~D~~v~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~  120 (319)
T 3frx_A           82 SASWDKTLRLWDVATGE----------------------------------------TYQRFVGHKSDVMSVDIDKKA-S  120 (319)
T ss_dssp             EEETTSEEEEEETTTTE----------------------------------------EEEEEECCSSCEEEEEECTTS-C
T ss_pred             EEeCCCEEEEEECCCCC----------------------------------------eeEEEccCCCcEEEEEEcCCC-C
Confidence            99999999999997542                                        336678999999999999998 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-----CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ++++++.|+.|++||++..   ....+.+|...|.++++.|.     ++..+++++.|+.|++||++.      .+....
T Consensus       121 ~l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~  191 (319)
T 3frx_A          121 MIISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEAD  191 (319)
T ss_dssp             EEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhhee
Confidence            8999999999999999743   46677889999999999982     234899999999999999998      788889


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +.+|...|.+++|+|++++ |++++.||.|++||+...               ..+..+.. ...|.+++|+|++.++++
T Consensus       192 ~~~h~~~v~~~~~sp~g~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~v~~~~~sp~~~~la~  254 (319)
T 3frx_A          192 FIGHNSNINTLTASPDGTL-IASAGKDGEIMLWNLAAK---------------KAMYTLSA-QDEVFSLAFSPNRYWLAA  254 (319)
T ss_dssp             ECCCCSCEEEEEECTTSSE-EEEEETTCEEEEEETTTT---------------EEEEEEEC-CSCEEEEEECSSSSEEEE
T ss_pred             ecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------cEEEEecC-CCcEEEEEEcCCCCEEEE
Confidence            9999999999999999995 679999999999999874               23444443 468999999999987663


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhh--------hhccCceEEEeeecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--------LEKFKAHVISCTSKP  387 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~f~P  387 (387)
                      +.         ++.+++|++..      +..+..        ...|...|.+++|+|
T Consensus       255 ~~---------~~~i~v~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          255 AT---------ATGIKVFSLDP------QYLVDDLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             EE---------TTEEEEEEETT------EEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred             Ec---------CCCcEEEEeCc------CeeeeccCccccccccCcCcceeEEEECC
Confidence            22         24699999983      333222        234677899999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-43  Score=300.88  Aligned_cols=285  Identities=18%  Similarity=0.280  Sum_probs=220.0

Q ss_pred             eeeeeecCCCcEEEEEe-----cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           23 KKHKTIIHPGEVNRIRE-----LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~-----~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      ....+.+|.+.|++++|     ++.++++|++|+.|++|++||+...+....     ...+...+.+|.. .|.+++|+|
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~l~~h~~-~V~~~~~~~   86 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALTGHNH-FVSDLALSQ   86 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEEECCCSS-CEEEEEECS
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccchhccCCC-ceEEEEECC
Confidence            34456789999999999     666889999999999999999976532110     1134567889998 799999999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      ++.+|++|+.|++|++||++++.                                        .+..+.+|...|.+++|
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~  126 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGT----------------------------------------TYKRFVGHQSEVYSVAF  126 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSC----------------------------------------EEEEEECCCSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCc----------------------------------------EEEEEcCCCCcEEEEEE
Confidence            99999999999999999997542                                        33667889999999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC----------CeEEEeeCCCeEEEEEeccC
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----------NLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~l~~~~~dg~i~~~d~~~~  247 (387)
                      +|++ .+|++++.|+.|++||+.............|...|.+++|+| ++          .+|++++.||.|++||..  
T Consensus       127 sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--  202 (343)
T 2xzm_R          127 SPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN--  202 (343)
T ss_dssp             CSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT--
T ss_pred             CCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC--
Confidence            9998 789999999999999997432111111236888999999999 65          789999999999999943  


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                           ......+.+|...|.+++|+|++++ |++++.||.|++||+......              ... ..+...|.++
T Consensus       203 -----~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~--------------~~~-~~~~~~v~~v  261 (343)
T 2xzm_R          203 -----FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYP--------------QRE-FDAGSTINQI  261 (343)
T ss_dssp             -----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSC--------------SEE-EECSSCEEEE
T ss_pred             -----CceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccc--------------cee-ecCCCcEEEE
Confidence                 5677888999999999999999996 679999999999999653221              111 1245579999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccc----cchh---hhhhhccCceEEEeeecC
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP----QDEV---LAELEKFKAHVISCTSKP  387 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~----~~~~---~~~~~~~~~~v~~~~f~P  387 (387)
                      +|+|++.+++ +        +.|+.|++|++.......    ....   .....+|...|.+++|+|
T Consensus       262 ~~sp~~~~la-~--------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  319 (343)
T 2xzm_R          262 AFNPKLQWVA-V--------GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA  319 (343)
T ss_dssp             EECSSSCEEE-E--------EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred             EECCCCCEEE-E--------ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence            9999987543 2        234789999997421110    0000   112237888999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-43  Score=298.55  Aligned_cols=287  Identities=17%  Similarity=0.271  Sum_probs=217.4

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE-ec-cCCCceEEEEECCCCCEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TG-HQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~v~~~~~~~~~~~l  102 (387)
                      ..+.+|.++|++++|+| +  +||+|+.||+|++||+..+.          ......+ .+ |.. .|.+++|+|++++|
T Consensus         8 ~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~----------~~~~~~~~~~~h~~-~v~~v~~sp~~~~l   73 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDD----------FTLIDVLDETAHKK-AIRSVAWRPHTSLL   73 (330)
T ss_dssp             EEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSC----------CEEEEEECTTCCCS-CEEEEEECTTSSEE
T ss_pred             eeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCC----------eEEEEEEecCCccC-CEEEEEECCCCCEE
Confidence            45568999999999998 4  99999999999999998751          1233344 34 776 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.|++|++||+......                                 ......+..+.+|...|.+++|+|++ 
T Consensus        74 as~s~D~~v~iw~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g-  119 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADR---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDG-  119 (330)
T ss_dssp             EEEETTSCEEEEEC----------------------------------------CCCEEEEEEC----CEEEEEECTTS-
T ss_pred             EEEeCCCcEEEEEcccCcCc---------------------------------cccceeEEEEcCCCCcEEEEEECCCC-
Confidence            99999999999998642100                                 01123346678999999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCC--CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          183 QEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      .+|++|+.|+.|++||++...  ......+.+|...|.+++|+| ++.+|++|+.|+.|++||.+...    .+++..+.
T Consensus       120 ~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~  194 (330)
T 2hes_X          120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVLN  194 (330)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEEC
T ss_pred             CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEcc
Confidence            899999999999999995432  224566788999999999999 99999999999999999998621    26788899


Q ss_pred             cccceEEEEEEcCC--CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEccCCCeEE
Q 016547          261 GHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       261 ~~~~~i~~~~~~~~--~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  337 (387)
                      +|...|.+++|+|+  +. +|++++.|+.|++||++.......       ........+.+ |...|.+++|++++ .++
T Consensus       195 ~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~  265 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQ-------QEWVCEAILPDVHKRQVYNVAWGFNG-LIA  265 (330)
T ss_dssp             CCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSC-------EEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred             CCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCcccc-------ceeEEeeecccccccceEEEEEcCCC-EEE
Confidence            99999999999998  44 478999999999999976421100       00122333444 88999999999754 454


Q ss_pred             EEecCCCCCCCCCceEEEEecCCCcccccc--hhh-hhhhccCc-eEEEeeecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVL-AELEKFKA-HVISCTSKP  387 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~--~~~-~~~~~~~~-~v~~~~f~P  387 (387)
                              +|+.||+|++|+..      .+  +.+ ..+.+|.. .|.+++|+|
T Consensus       266 --------s~~~dg~v~iw~~~------~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          266 --------SVGADGVLAVYEEV------DGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             --------EEETTSCEEEEEEE------TTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             --------EEeCCCEEEEEEcC------CCceEEEeccccccccceEEEEEEec
Confidence                    56666999999987      33  222 23457877 899999987

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-43  Score=323.77  Aligned_cols=318  Identities=18%  Similarity=0.263  Sum_probs=243.8

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .+.+.+.+++|+| ++++||+++ ++.|++|++.++            .....+.+|.. .|++++|+|+|++|++|+.|
T Consensus        16 ~~~g~~~~~~~sp-dg~~l~~~~-~~~v~l~~~~~~------------~~~~~~~~h~~-~v~~~~~spdg~~lasg~~d   80 (611)
T 1nr0_A           16 TARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSL------------TDTEIYTEHSH-QTTVAKTSPSGYYCASGDVH   80 (611)
T ss_dssp             CCTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCS------------SCCEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred             cccCceeEEeeCC-CCCEEEeCC-CCEEEEecCCCc------------ccCeEecCCCC-ceEEEEECCCCcEEEEEeCC
Confidence            3578899999999 889999987 569999999877            67788999998 69999999999999999999


Q ss_pred             CeEEEEEcCCCcCccc--cC----CCcccCCCCCCceeccCCC--CCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          109 KSVVLWSIQDHITSSA--TD----PATAKSAGSSGSIIKQSPK--PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      ++|++||+.++.....  ..    ..........+..+.....  ...+.+.+|+  .......+.+|...|.+++|+|+
T Consensus        81 ~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~  158 (611)
T 1nr0_A           81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS  158 (611)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred             CCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCC
Confidence            9999999975432211  10    0000111111111111111  1112445555  34456678899999999999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      ++..|++++.|++|++||....+  ....+.+|...|++++|+| ++++|++|+.|+.|++||+.+      ++.+..+.
T Consensus       159 ~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~------g~~~~~~~  229 (611)
T 1nr0_A          159 RPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFE  229 (611)
T ss_dssp             SSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECB
T ss_pred             CCeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCC------CcEeeeec
Confidence            85579999999999999987765  5677889999999999999 999999999999999999988      77777774


Q ss_pred             -------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC--------------------------
Q 016547          261 -------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT--------------------------  307 (387)
Q Consensus       261 -------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------------------------  307 (387)
                             +|...|.+++|+|++++ |++++.|+.|++||+++............                          
T Consensus       230 ~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~  308 (611)
T 1nr0_A          230 DDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF  308 (611)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             cccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence                   79999999999999995 67999999999999987433221110000                          


Q ss_pred             --CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh-hccCceEEEee
Q 016547          308 --NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCT  384 (387)
Q Consensus       308 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~  384 (387)
                        .........+.+|...|++++|+|++++++        +++.|++|++||+.      ++++...+ .+|...|.+++
T Consensus       309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--------s~s~D~~v~~Wd~~------~~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          309 VNPELGSIDQVRYGHNKAITALSSSADGKTLF--------SADAEGHINSWDIS------TGISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETT------TCCEEECSSCSCSSCEEEEE
T ss_pred             EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--------EEeCCCcEEEEECC------CCceeeecccCCcceEEEEE
Confidence              001123455678999999999999999887        77777999999999      56655554 57999999999


Q ss_pred             ecC
Q 016547          385 SKP  387 (387)
Q Consensus       385 f~P  387 (387)
                      |+|
T Consensus       375 ~s~  377 (611)
T 1nr0_A          375 TTS  377 (611)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-43  Score=324.00  Aligned_cols=311  Identities=14%  Similarity=0.188  Sum_probs=234.9

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-------ccCCCceEEEEECC
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-------GHQDNAEFALAMCP   97 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~v~~~~~~~   97 (387)
                      ..+.+|.+.|++++|+| ++++||+|+.|++|++||+.++            +....+.       +|.+ .|.+++|+|
T Consensus       184 ~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g------------~~~~~~~~~~~~~~~h~~-~V~~v~~sp  249 (611)
T 1nr0_A          184 STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG------------TKTGVFEDDSLKNVAHSG-SVFGLTWSP  249 (611)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEECBCTTSSSCSSSS-CEEEEEECT
T ss_pred             eeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC------------cEeeeeccccccccccCC-CEEEEEECC
Confidence            44567999999999999 8999999999999999999887            3444442       6887 799999999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCC-----CCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG-----SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  172 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  172 (387)
                      ++++|++++.|++|++||+.++...............     ....  .......++.+.+|+.........+.+|...|
T Consensus       250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v  327 (611)
T 1nr0_A          250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVRYGHNKAI  327 (611)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS--CEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC--EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence            9999999999999999999876544332211000000     0000  01111234556666666666677788999999


Q ss_pred             EEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeE--------------------------------------------
Q 016547          173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK--------------------------------------------  208 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------------------  208 (387)
                      ++++|+|++ .+|++++.|+.|++||+.+++.....                                            
T Consensus       328 ~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~  406 (611)
T 1nr0_A          328 TALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV  406 (611)
T ss_dssp             EEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred             EEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence            999999998 88999999999999998765310000                                            


Q ss_pred             ------------------------------------EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547          209 ------------------------------------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  252 (387)
Q Consensus       209 ------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  252 (387)
                                                          ....|...+.+++|+| ++++|++|+.|+.|++||+..      
T Consensus       407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~------  479 (611)
T 1nr0_A          407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSG------  479 (611)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEET------
T ss_pred             eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccC------
Confidence                                                0001234578899999 999999999999999999986      


Q ss_pred             CCc--eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          253 GSP--INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       253 ~~~--~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                      ...  +.. .+|...|++++|+|++++ |++++.|+.|++||+....+...            .....+|...|++++|+
T Consensus       480 ~~~~~~~~-~~h~~~v~~v~fspdg~~-las~s~d~~v~~w~~~~~~~~~~------------~~~~~~H~~~V~~v~fs  545 (611)
T 1nr0_A          480 ASVSEVKT-IVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFELAH------------TNSWTFHTAKVACVSWS  545 (611)
T ss_dssp             TEEEEEEE-EECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEESC------------CCCCCCCSSCEEEEEEC
T ss_pred             Cceeeeec-cCCCCceEEEEECCCCCE-EEEEcCCCCEEEEEcCCCCceee------------eeeeeecccceeEEEEC
Confidence            322  333 679999999999999996 67999999999999986322110            00124599999999999


Q ss_pred             cCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccch-hh-hhhhcc-CceEEEeeecC
Q 016547          331 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE-VL-AELEKF-KAHVISCTSKP  387 (387)
Q Consensus       331 ~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~-~~-~~~~~~-~~~v~~~~f~P  387 (387)
                      |++++|+        +|+.|++|++|++.      .++ .+ ..+.+| .+.|.+++|+|
T Consensus       546 pdg~~la--------sgs~D~~v~lW~~~------~~~~~~~~~~~~h~~~~v~~v~fs~  591 (611)
T 1nr0_A          546 PDNVRLA--------TGSLDNSVIVWNMN------KPSDHPIIIKGAHAMSSVNSVIWLN  591 (611)
T ss_dssp             TTSSEEE--------EEETTSCEEEEETT------CTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             CCCCEEE--------EEECCCcEEEEECC------CcccccchhhccCcccCeeEEEEcC
Confidence            9999887        77778999999998      333 33 567789 89999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-43  Score=297.12  Aligned_cols=267  Identities=18%  Similarity=0.312  Sum_probs=214.3

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .+|.+.|.+++|+| ++++||+|+.|++|++||+....          ......+.+|.. .|.+++|+|++++|++|+.
T Consensus        58 ~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~----------~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~  125 (345)
T 3fm0_A           58 EGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD----------FECVTTLEGHEN-EVKSVAWAPSGNLLATCSR  125 (345)
T ss_dssp             SSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-----------EEEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred             cccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC----------eEEEEEccCCCC-CceEEEEeCCCCEEEEEEC
Confidence            57999999999999 88999999999999999987651          134677889987 7999999999999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      |++|++||+.+...                                     ...+..+.+|...|.+++|+|++ .+|++
T Consensus       126 D~~v~iwd~~~~~~-------------------------------------~~~~~~~~~h~~~v~~~~~~p~~-~~l~s  167 (345)
T 3fm0_A          126 DKSVWVWEVDEEDE-------------------------------------YECVSVLNSHTQDVKHVVWHPSQ-ELLAS  167 (345)
T ss_dssp             TSCEEEEEECTTSC-------------------------------------EEEEEEECCCCSCEEEEEECSSS-SCEEE
T ss_pred             CCeEEEEECCCCCC-------------------------------------eEEEEEecCcCCCeEEEEECCCC-CEEEE
Confidence            99999999975321                                     12235677899999999999998 78999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC---------CCCceEE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---------VGSPINK  258 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---------~~~~~~~  258 (387)
                      ++.|+.|++||.+..+......+.+|...|++++|+| ++++|++|+.||.|++||........         ..+++..
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT  246 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred             EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence            9999999999998876445567889999999999999 99999999999999999986432110         0123444


Q ss_pred             ecc-ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce-eeeeeccCCCCeeEEEEccCCCeE
Q 016547          259 FEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRDKVVDFHWNASDPWT  336 (387)
Q Consensus       259 ~~~-~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l  336 (387)
                      +.+ |...|.+++|+|++.. |++++.|+.|++|+.........       .... ......+|...|++++|+|+++.+
T Consensus       247 ~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  318 (345)
T 3fm0_A          247 LSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDPNSDPQQ-------PTFSLTAHLHQAHSQDVNCVAWNPKEPGL  318 (345)
T ss_dssp             ECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECTTSCTTS-------CCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred             ecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCCCCCcce-------eeEEEEeeecccccCcEeEeEEeCCCceE
Confidence            544 8889999999999985 67999999999999876432110       0001 122346899999999999998766


Q ss_pred             EEEecCCCCCCCCCceEEEEecCC
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +++++       .||+|++|++..
T Consensus       319 laS~s-------~Dg~v~~W~~~~  335 (345)
T 3fm0_A          319 LASCS-------DDGEVAFWKYQR  335 (345)
T ss_dssp             EEEEE-------TTSCEEEEEECC
T ss_pred             EEEcC-------CCCcEEEEEecC
Confidence            66554       559999999993

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.9e-42  Score=290.27  Aligned_cols=248  Identities=21%  Similarity=0.320  Sum_probs=213.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .....|.+.|.+++|+| ++++|++|+.|+.|++|++.+.+.        .......+.+|.+ .|.++.|++++. +++
T Consensus        91 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s  159 (340)
T 1got_B           91 HAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREG--------NVRVSRELAGHTG-YLSCCRFLDDNQ-IVT  159 (340)
T ss_dssp             EEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSB--------SCEEEEEEECCSS-CEEEEEEEETTE-EEE
T ss_pred             eEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCC--------cceeEEEecCCCc-cEEEEEECCCCc-EEE
Confidence            34457999999999999 889999999999999999987631        1134567888987 799999998775 889


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|++|++||++++.                                        .+..+.+|...|.+++|+|++ .+
T Consensus       160 ~s~d~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~  198 (340)
T 1got_B          160 SSGDTTCALWDIETGQ----------------------------------------QTTTFTGHTGDVMSLSLAPDT-RL  198 (340)
T ss_dssp             EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SE
T ss_pred             EECCCcEEEEECCCCc----------------------------------------EEEEEcCCCCceEEEEECCCC-CE
Confidence            9999999999997542                                        336677899999999999998 88


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc--c
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H  262 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~--~  262 (387)
                      +++|+.|+.|++||++++.  ....+.+|...|++++|+| ++++|++|+.||.|++||++.      .+.+..+..  +
T Consensus       199 l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~  269 (340)
T 1got_B          199 FVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNI  269 (340)
T ss_dssp             EEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTC
T ss_pred             EEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCCc
Confidence            9999999999999999887  6777889999999999999 999999999999999999998      666666642  3


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...|.+++|+|++++ +++|+.|+.|++||+...               .....+.+|...|.+++|+|++.+++     
T Consensus       270 ~~~v~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~dg~~l~-----  328 (340)
T 1got_B          270 ICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMAVA-----  328 (340)
T ss_dssp             CSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTSSCEE-----
T ss_pred             ccceEEEEECCCCCE-EEEECCCCeEEEEEcccC---------------cEeeEeecCCCcEEEEEEcCCCCEEE-----
Confidence            357999999999995 679999999999999874               34566789999999999999999887     


Q ss_pred             CCCCCCCCceEEEEe
Q 016547          343 DCDSTGGGGTLQIWR  357 (387)
Q Consensus       343 d~~tg~~dg~i~iw~  357 (387)
                         ||+.||+|+|||
T Consensus       329 ---s~s~D~~i~iWd  340 (340)
T 1got_B          329 ---TGSWDSFLKIWN  340 (340)
T ss_dssp             ---EEETTSCEEEEC
T ss_pred             ---EEcCCccEEecC
Confidence               777889999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-41  Score=309.48  Aligned_cols=262  Identities=25%  Similarity=0.486  Sum_probs=231.2

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ...+|.+.|.+++|+| ++++|++++.||+|++||....             ....+.+|.. .|.+++|+|++++|+++
T Consensus       298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~-~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSS-SVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred             EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence            4557999999999999 8899999999999999997654             4566788887 68999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|+.|++||...                                         +.+..+.+|...|.+++|+|++ .+|
T Consensus       363 ~~dg~v~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~dg-~~l  400 (577)
T 2ymu_A          363 SDDKTVKLWNRNG-----------------------------------------QLLQTLTGHSSSVRGVAFSPDG-QTI  400 (577)
T ss_dssp             ETTSEEEEEETTC-----------------------------------------CEEEEEECCSSCEEEEEECTTS-SCE
T ss_pred             eCCCEEEEEcCCC-----------------------------------------CEEEEecCCCCCeEEEEECCCC-CEE
Confidence            9999999999642                                         2335677899999999999999 889


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      ++++.|+.|++||.. ++  ....+..|...|++++|+| ++++|++++.|+.|++||..       ++.+..+.+|...
T Consensus       401 ~~~~~d~~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~  469 (577)
T 2ymu_A          401 ASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSS  469 (577)
T ss_dssp             EEEETTSEEEEECTT-CC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSC
T ss_pred             EEEeCCCEEEEEeCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCC
Confidence            999999999999964 33  5677889999999999999 99999999999999999964       6788899999999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |.+++|+|++++ |++++.|+.|++||...                .++..+.+|...|++++|+|++++|+        
T Consensus       470 v~~~~~spd~~~-las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~--------  524 (577)
T 2ymu_A          470 VRGVAFSPDGQT-IASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIA--------  524 (577)
T ss_dssp             EEEEEECTTSCE-EEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSSCEE--------
T ss_pred             EEEEEEcCCCCE-EEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEE--------
Confidence            999999999995 67999999999999643                34667789999999999999999887        


Q ss_pred             CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +++.||.|++||..       ++++.++.+|.+.|++++|+|
T Consensus       525 s~~~dg~v~lwd~~-------~~~~~~~~~h~~~v~~~~fs~  559 (577)
T 2ymu_A          525 SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP  559 (577)
T ss_dssp             EEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECT
T ss_pred             EEECcCEEEEEeCC-------CCEEEEEcCCCCCEEEEEEcC
Confidence            66777999999965       678889999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-41  Score=288.30  Aligned_cols=263  Identities=19%  Similarity=0.301  Sum_probs=198.8

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      |.+.|++++|+| ++++||+|+.|++|+|||++......     ........+.+|.. .|.+++|+|++++|++|+.|+
T Consensus        57 h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D~  129 (330)
T 2hes_X           57 HKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRDK  129 (330)
T ss_dssp             CCSCEEEEEECT-TSSEEEEEETTSCEEEEEC------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS
T ss_pred             ccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCCC
Confidence            999999999999 88999999999999999986531100     01245677889987 799999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|++||+....                                    ...+.+..+.+|...|.+++|+|++ .+|++++
T Consensus       130 ~v~iwd~~~~~------------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s  172 (330)
T 2hes_X          130 SVWIWETDESG------------------------------------EEYECISVLQEHSQDVKHVIWHPSE-ALLASSS  172 (330)
T ss_dssp             CEEEEECCTTC------------------------------------CCCEEEEEECCCSSCEEEEEECSSS-SEEEEEE
T ss_pred             EEEEEeccCCC------------------------------------CCeEEEEEeccCCCceEEEEECCCC-CEEEEEc
Confidence            99999995321                                    1122346678899999999999998 8899999


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeCCCeEEEEEeccCCCCCC--CCceEEecc-ccc
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGV--GSPINKFEG-HSA  264 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~~~~-~~~  264 (387)
                      .|+.|++||...+.......+.+|...|.+++|+| +  +.+|++|+.|+.|++||++.......  ..+...+.. |..
T Consensus       173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~  251 (330)
T 2hes_X          173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR  251 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred             CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence            99999999998764335677889999999999999 6  67899999999999999986311000  033444544 889


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC-CeeEEEEcc--CCCeEEEEec
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNA--SDPWTVVSVS  341 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~s~s  341 (387)
                      .|.+++|++++  +|++++.||.|++||.......            .......+|.. .|++++|+|  ++.+|+    
T Consensus       252 ~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~------------~~~~~~~~h~~~~v~~v~~~~~~~~~~la----  313 (330)
T 2hes_X          252 QVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWK------------VFAKRALCHGVYEINVVKWLELNGKTILA----  313 (330)
T ss_dssp             CEEEEEECTTS--CEEEEETTSCEEEEEEETTEEE------------EEEEESCTTTTSCEEEEEEC-----CCEE----
T ss_pred             ceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceE------------EEeccccccccceEEEEEEecCCCceEEE----
Confidence            99999999776  4679999999999998753111            11223357877 899999999  566555    


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                          ||+.||+|++|++.
T Consensus       314 ----s~s~Dg~v~~W~~~  327 (330)
T 2hes_X          314 ----TGGDDGIVNFWSLE  327 (330)
T ss_dssp             ----EEETTSEEEEEEC-
T ss_pred             ----EecCCCcEEEEEec
Confidence                66667999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.5e-42  Score=291.56  Aligned_cols=299  Identities=19%  Similarity=0.287  Sum_probs=224.9

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .++.||.+.|++|+|+|+++++||||+.||+|+|||+.+.+...       ..+...+.+|.. .|.+++|+|++++|++
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l~~h~~-~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRALRGHSH-FVSDVVISSDGQFALS  103 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEEeCCCC-CEEEEEECCCCCEEEE
Confidence            45678999999999999668999999999999999998764221       135667899987 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCceeccCCCCCCCCCCCCCCCCCC-CceeecCCCCCeEEEEEcc
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~  179 (387)
                      ++.|+.|++|+................    ........+  .....++.+.+|+..... ......+|...+..++|++
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI--VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCE--EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccc--eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            999999999999876433222111100    001111111  111234455556554433 2344568899999999998


Q ss_pred             CCC-eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          180 SSA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       180 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ++. .++++++.|+.|++||+++.+  ....+.+|...|++++|+| ++++|++|+.||.|++||+++      .+++..
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~  252 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYT  252 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEE
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------Cceeee
Confidence            753 467889999999999999877  6777889999999999999 999999999999999999998      788888


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +.. ...|.+++|+|++. ++ +++.|+.|++||++..........      ........+|...|++++|+|++++|+ 
T Consensus       253 ~~~-~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~-  322 (340)
T 4aow_A          253 LDG-GDIINALCFSPNRY-WL-CAATGPSIKIWDLEGKIIVDELKQ------EVISTSSKAEPPQCTSLAWSADGQTLF-  322 (340)
T ss_dssp             EEC-SSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEECC------C-------CCCCCEEEEEECTTSSEEE-
T ss_pred             ecC-CceEEeeecCCCCc-ee-eccCCCEEEEEECCCCeEEEeccc------cceeeeccCCCCCEEEEEECCCCCEEE-
Confidence            874 46799999999886 44 666799999999987432211110      112233467899999999999999887 


Q ss_pred             EecCCCCCCCCCceEEEEecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~  359 (387)
                             ||+.||.|+|||+.
T Consensus       323 -------sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          323 -------AGYTDNLVRVWQVT  336 (340)
T ss_dssp             -------EEETTSCEEEEEEE
T ss_pred             -------EEeCCCEEEEEeCC
Confidence                   77778999999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.6e-41  Score=281.06  Aligned_cols=251  Identities=21%  Similarity=0.339  Sum_probs=214.5

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .....|..+|.+++|+| ++++|++|+.|++|++||+.++            +.+..+.+|.+ .|.+++|+|++++|++
T Consensus        49 ~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s  114 (304)
T 2ynn_A           49 RSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLS  114 (304)
T ss_dssp             EEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEE
T ss_pred             EEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEeCCCC-cEEEEEEcCCCCEEEE
Confidence            44557999999999999 8899999999999999999988            67888999998 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.|++|++||++++.                                       .....+.+|...|.+++|+|+++.+
T Consensus       115 gs~D~~v~lWd~~~~~---------------------------------------~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A          115 GSDDLTVKLWNWENNW---------------------------------------ALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EETTSCEEEEEGGGTT---------------------------------------EEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             ECCCCeEEEEECCCCc---------------------------------------chhhhhcccCCcEEEEEECCCCCCE
Confidence            9999999999997531                                       1225678899999999999965588


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      |++|+.|+.|++||++.... .......|...+..++|+|. ++.+|++|+.|+.|++||+++      ++++..+.+|.
T Consensus       156 l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~  228 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHM  228 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCS
T ss_pred             EEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCC
Confidence            99999999999999987663 23334466788999999862 567999999999999999998      88999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSD  342 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~  342 (387)
                      ..|.+++|+|+++. |++++.||.|++||+.+.               ++...+..|...+.+++|+|++.. +++++++
T Consensus       229 ~~v~~~~~~p~~~~-l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          229 SNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             SCEEEEEECSSSSE-EEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred             CCEEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence            99999999999995 679999999999999875               346677888999999999998864 3554443


Q ss_pred             CCCCCCCCceEEEEecC
Q 016547          343 DCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~  359 (387)
                              +.+.+|++.
T Consensus       293 --------~g~~~~~~~  301 (304)
T 2ynn_A          293 --------NGFTVLSLG  301 (304)
T ss_dssp             --------TEEEEEECC
T ss_pred             --------CceEEEEec
Confidence                    468888887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-42  Score=291.74  Aligned_cols=261  Identities=20%  Similarity=0.303  Sum_probs=205.7

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~  103 (387)
                      ...+|.+.|++++|+| ++++||+|+.|++|+|||+.++.          ...+..+.+|.+ .|.+++|++  ++++|+
T Consensus         8 ~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~----------~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~   75 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGG----------QILIADLRGHEG-PVWQVAWAHPMYGNILA   75 (316)
T ss_dssp             ------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEECCGGGSSCEE
T ss_pred             ecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCC----------cEEEEEEcCCCc-cEEEEEeCCCCCCCEEE
Confidence            3458999999999999 89999999999999999998761          024567899998 799999986  489999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-C
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-A  182 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  182 (387)
                      +|+.|++|++||++++.                                      ......+.+|...|.+++|+|++ +
T Consensus        76 s~s~D~~v~iWd~~~~~--------------------------------------~~~~~~~~~h~~~V~~v~~~p~~~g  117 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGT--------------------------------------WEKSHEHAGHDSSVNSVCWAPHDYG  117 (316)
T ss_dssp             EEETTSCEEEECCSSSC--------------------------------------CCEEEEECCCSSCCCEEEECCTTTC
T ss_pred             EEECCCEEEEEECCCCc--------------------------------------ceEEEEccCCCCceEEEEECCCCCC
Confidence            99999999999987532                                      11235567899999999999982 2


Q ss_pred             eeEEEecCCCeEEEEEccCCCC-ceeEEeeccCCCeeEEEecCCC-----------------CCeEEEeeCCCeEEEEEe
Q 016547          183 QEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD-----------------DNLILTGSADNSVRMFDR  244 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-----------------~~~l~~~~~dg~i~~~d~  244 (387)
                      .+|++++.|+.|++||++.... .....+..|...+.+++|+| +                 +.+|++|+.|+.|++||+
T Consensus       118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence            7899999999999999987632 12345567889999999999 5                 478999999999999999


Q ss_pred             ccCCCCCCCCceEEeccccceEEEEEEcCCC---CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  321 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (387)
                      +....   .+++..+.+|...|.+++|+|++   ..+|++++.|+.|++||++......           .....+..|.
T Consensus       197 ~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----------~~~~~~~~~~  262 (316)
T 3bg1_A          197 EEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----------WSPKLLHKFN  262 (316)
T ss_dssp             CTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----------CBCCEEEECS
T ss_pred             CCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-----------hhhhhhhcCC
Confidence            75110   14667788999999999999986   2357899999999999997632110           0112235688


Q ss_pred             CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       322 ~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..|.+++|+|++++|+        +|+.||+|++|+..
T Consensus       263 ~~v~~v~~sp~g~~la--------s~~~D~~v~lw~~~  292 (316)
T 3bg1_A          263 DVVWHVSWSITANILA--------VSGGDNKVTLWKES  292 (316)
T ss_dssp             SCEEEEEECTTTCCEE--------EEESSSCEEEEEEC
T ss_pred             CcEEEEEEcCCCCEEE--------EEcCCCeEEEEEEC
Confidence            8999999999999877        66677999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.1e-41  Score=282.72  Aligned_cols=254  Identities=15%  Similarity=0.289  Sum_probs=211.2

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++            +....+.+|.. .|.+++|+|++++|+
T Consensus        58 ~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~  123 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATG------------ETYQRFVGHKS-DVMSVDIDKKASMII  123 (319)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSCEEE
T ss_pred             ceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------CeeEEEccCCC-cEEEEEEcCCCCEEE
Confidence            345668999999999999 8999999999999999999988            67788999998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC--
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS--  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  181 (387)
                      +|+.|++|++||++..                                         .+..+.+|...|.++.|.|..  
T Consensus       124 s~s~D~~i~vwd~~~~-----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A          124 SGSRDKTIKVWTIKGQ-----------------------------------------CLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEETTSCEEEEETTSC-----------------------------------------EEEEECCCSSCEEEEEECCC---
T ss_pred             EEeCCCeEEEEECCCC-----------------------------------------eEEEEeccCCcEEEEEEccCCCC
Confidence            9999999999998632                                         235677899999999999853  


Q ss_pred             ---CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          182 ---AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       182 ---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                         ...+++++.|+.|++||+++.+  ....+.+|...|.+++|+| ++++|++|+.||.|++||+++      .+.+..
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~------~~~~~~  233 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA------KKAMYT  233 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEE
T ss_pred             CCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------CcEEEE
Confidence               2479999999999999998876  5667789999999999999 999999999999999999998      788888


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +.. ...|.+++|+|++.. +++++ ++.+++|++...........       ........|...+.+++|+|+|++|+ 
T Consensus       234 ~~~-~~~v~~~~~sp~~~~-la~~~-~~~i~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~spdg~~l~-  302 (319)
T 3frx_A          234 LSA-QDEVFSLAFSPNRYW-LAAAT-ATGIKVFSLDPQYLVDDLRP-------EFAGYSKAAEPHAVSLAWSADGQTLF-  302 (319)
T ss_dssp             EEC-CSCEEEEEECSSSSE-EEEEE-TTEEEEEEETTEEEEEEECC-------CCTTCCGGGCCCEEEEEECTTSSEEE-
T ss_pred             ecC-CCcEEEEEEcCCCCE-EEEEc-CCCcEEEEeCcCeeeeccCc-------cccccccCcCcceeEEEECCCCCEEE-
Confidence            875 467999999999985 55665 55699999986422111000       00011234667899999999999888 


Q ss_pred             EecCCCCCCCCCceEEEEecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~  359 (387)
                             +|+.||.|+|||+.
T Consensus       303 -------sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          303 -------AGYTDNVIRVWQVM  316 (319)
T ss_dssp             -------EEETTSCEEEEEEE
T ss_pred             -------EeecCceEEEEEEe
Confidence                   77778999999987

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.2e-41  Score=306.23  Aligned_cols=268  Identities=24%  Similarity=0.461  Sum_probs=228.7

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      +..++.+|.+.|++++|+| ++++||+|+.|++|+|||. ++            +.+..+.+|.. .|++++|+|++++|
T Consensus         8 e~~~L~GH~~~V~~~a~sp-dg~~las~~~d~~v~iWd~-~~------------~~~~~l~gh~~-~V~~l~fspdg~~l   72 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NG------------QLLQTLTGHSS-SVWGVAFSPDGQTI   72 (577)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TS------------CEEEEEECCSS-CEEEEEECTTSSEE
T ss_pred             EeeEECCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEC-CC------------CEEEEEeCCCC-CEEEEEECCCCCEE
Confidence            3456779999999999999 9999999999999999995 44            56788999998 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|++|++||...                                         +.+..+.+|...|.+++|+|++ 
T Consensus        73 as~~~d~~i~vWd~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~d~-  110 (577)
T 2ymu_A           73 ASASDDKTVKLWNRNG-----------------------------------------QLLQTLTGHSSSVRGVAFSPDG-  110 (577)
T ss_dssp             EEEETTSCEEEEETTS-----------------------------------------CEEEEECCCSSCEEEEEECTTS-
T ss_pred             EEEeCCCEEEEEECCC-----------------------------------------CEEEEEECCCCCEEEEEECCCC-
Confidence            9999999999999642                                         2336677889999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCC--------------------------------------ceeEEeeccCCCeeEEEecC
Q 016547          183 QEFCSVGDDSCLILWDARVGTS--------------------------------------PVIKVEKAHDADLHCVDWNP  224 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~  224 (387)
                      .++++++.|+.+++|+......                                      ........|...|.++.++|
T Consensus       111 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  190 (577)
T 2ymu_A          111 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP  190 (577)
T ss_dssp             SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred             CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC
Confidence            7899999999999998653210                                      11223345777889999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547          225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       225 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  304 (387)
                       ++.+|++++.||.|++||..       ++.+..+.+|...|.+++|+|+++. +++++.|+.|++||...         
T Consensus       191 -~~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~i~~w~~~~---------  252 (577)
T 2ymu_A          191 -DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG---------  252 (577)
T ss_dssp             -TSSCEEEEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTS---------
T ss_pred             -CCCEEEEEcCCCEEEEEeCC-------CcEEEEEecCCCCEEEEEECCCCCE-EEEEeCCCEEEEEeCCC---------
Confidence             99999999999999999964       6788899999999999999999996 57999999999999654         


Q ss_pred             CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEee
Q 016547          305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT  384 (387)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  384 (387)
                             +.+..+.+|...|++++|+|+++.++        +++.|+.|++|+..       ++.+..+.+|...|++++
T Consensus       253 -------~~~~~~~~~~~~v~~v~~~~d~~~l~--------~~~~d~~i~~w~~~-------~~~~~~~~~h~~~v~~~~  310 (577)
T 2ymu_A          253 -------QLLQTLTGHSSSVNGVAFRPDGQTIA--------SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVA  310 (577)
T ss_dssp             -------CEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETT-------SCEEEEECCCSSCEEEEE
T ss_pred             -------CEEEEEecCCCCEEEEEEcCCCCEEE--------EEeCCCEEEEEeCC-------CcEEEEEecCCCCeEEEE
Confidence                   34666788999999999999999877        66677999999976       667788899999999999


Q ss_pred             ecC
Q 016547          385 SKP  387 (387)
Q Consensus       385 f~P  387 (387)
                      |+|
T Consensus       311 ~~~  313 (577)
T 2ymu_A          311 FSP  313 (577)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            987

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-40  Score=283.48  Aligned_cols=252  Identities=19%  Similarity=0.298  Sum_probs=214.0

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .....|...|.+++|+| ++.+|++|+.|+.+++|++.......      .......+.+|.. .|.++.|+|++..|++
T Consensus       100 ~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t  171 (354)
T 2pbi_B          100 HAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNEN------MAAKKKSVAMHTN-YLSACSFTNSDMQILT  171 (354)
T ss_dssp             EEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCC------SGGGCEEEEECSS-CEEEEEECSSSSEEEE
T ss_pred             eEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEecccccc------ccccceeeeccCC-cEEEEEEeCCCCEEEE
Confidence            34456889999999999 89999999999999999987653211      1134567788987 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC-Ce
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQ  183 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  183 (387)
                      ++.|++|++||++++                                        +.+..+.+|...|.+++|+|+. +.
T Consensus       172 ~s~D~~v~lwd~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          172 ASGDGTCALWDVESG----------------------------------------QLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EETTSEEEEEETTTC----------------------------------------CEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EeCCCcEEEEeCCCC----------------------------------------eEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            999999999999754                                        2346778899999999998852 27


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-  262 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-  262 (387)
                      +|++|+.||.|++||+++++  ....+..|...|++++|+| ++.+|++|+.|+.|++||++.      ...+..+..+ 
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~------~~~~~~~~~~~  282 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA------DREVAIYSKES  282 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTT
T ss_pred             EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCC
Confidence            89999999999999999887  6777889999999999999 999999999999999999997      6666555433 


Q ss_pred             -cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          263 -SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       263 -~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                       ...+.+++|+|++++ +++++.|+.|++||+.+.               ..+..+.+|...|++++|+|++.+|+    
T Consensus       283 ~~~~~~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~---------------~~~~~l~~h~~~v~~l~~spdg~~l~----  342 (354)
T 2pbi_B          283 IIFGASSVDFSLSGRL-LFAGYNDYTINVWDVLKG---------------SRVSILFGHENRVSTLRVSPDGTAFC----  342 (354)
T ss_dssp             CCSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC---------------SEEEEECCCSSCEEEEEECTTSSCEE----
T ss_pred             cccceeEEEEeCCCCE-EEEEECCCcEEEEECCCC---------------ceEEEEECCCCcEEEEEECCCCCEEE----
Confidence             357899999999995 679999999999999875               23566789999999999999999887    


Q ss_pred             CCCCCCCCCceEEEEe
Q 016547          342 DDCDSTGGGGTLQIWR  357 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~  357 (387)
                          +|+.||+|++|+
T Consensus       343 ----sgs~D~~v~vW~  354 (354)
T 2pbi_B          343 ----SGSWDHTLRVWA  354 (354)
T ss_dssp             ----EEETTSEEEEEC
T ss_pred             ----EEcCCCCEEecC
Confidence                777889999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=280.95  Aligned_cols=284  Identities=14%  Similarity=0.242  Sum_probs=234.2

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT   98 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~   98 (387)
                      ....+...+.+|.+.|++++|+| ++++|++|+.||.|++||+.++            +....+.+|.. .|.+++|+|+
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~   85 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTG-TIWSIDVDCF   85 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTT
T ss_pred             ccccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCC-cEEEEEEcCC
Confidence            33567778889999999999999 8899999999999999999988            77888999987 7999999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      +++|++++.||.|++||+.++..                                        +..+. +...|.+++|+
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~~----------------------------------------~~~~~-~~~~v~~~~~~  124 (369)
T 3zwl_B           86 TKYCVTGSADYSIKLWDVSNGQC----------------------------------------VATWK-SPVPVKRVEFS  124 (369)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCE----------------------------------------EEEEE-CSSCEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcE----------------------------------------EEEee-cCCCeEEEEEc
Confidence            99999999999999999975432                                        23333 77889999999


Q ss_pred             cCCCeeEEEecCC-----CeEEEEEccCCCCc---------eeEEeeccCC--CeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          179 PSSAQEFCSVGDD-----SCLILWDARVGTSP---------VIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       179 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      |++ .++++++.+     +.|++||++.....         .......|..  .+.+++|+| ++++|++++.||.|++|
T Consensus       125 ~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~  202 (369)
T 3zwl_B          125 PCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKY  202 (369)
T ss_dssp             TTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEE
T ss_pred             cCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEE
Confidence            998 788888888     99999999876421         2233445555  899999999 99999999999999999


Q ss_pred             EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547          243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  322 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (387)
                      |+++.     ...+..+..|...|.+++|+|++++ |++++.|+.|++||++...               ....+. +..
T Consensus       203 d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~---------------~~~~~~-~~~  260 (369)
T 3zwl_B          203 DVSNN-----YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVSTLQ---------------VLKKYE-TDC  260 (369)
T ss_dssp             ETTTT-----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCC---------------EEEEEE-CSS
T ss_pred             ECCCC-----cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCCCc---------------eeeeec-CCC
Confidence            99863     4677888889999999999999996 5689999999999998752               233333 778


Q ss_pred             CeeEEEEccCCCeEEEEecCCCC------CCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCD------STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~------tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .+..++|+|+++++++++.++..      .......+++||+.      .++++..+.+|...|.+++|+|
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~~~v~~~~~s~  325 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI------FEEEIGRVQGHFGPLNTVAISP  325 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC------CCcchhheecccCcEEEEEECC
Confidence            99999999999988854432200      00011189999999      7888999999999999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-40  Score=290.18  Aligned_cols=279  Identities=13%  Similarity=0.168  Sum_probs=228.2

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC----C-
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT----E-   99 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~----~-   99 (387)
                      ..+.+|.+.|++++|+|   ++|++|+.||.|++||+.+.+....      ......+.+|.. .|.+++|+|+    + 
T Consensus        10 ~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~-~v~~~~~~~~~~~~g~   79 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKS-GLHHVDVLQAIERDAF   79 (397)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTT-CEEEEEEEEEEETTTE
T ss_pred             hhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCC-cEEEEEEecccccCCc
Confidence            34457999999999987   6999999999999999998732111      136778889987 6999999999    9 


Q ss_pred             --CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-----CCCe
Q 016547          100 --PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----EDTV  172 (387)
Q Consensus       100 --~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v  172 (387)
                        ++|++++.||.|++||+.++...                                   .......+..|     ...|
T Consensus        80 ~~~~l~s~~~dg~i~iw~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~v  124 (397)
T 1sq9_A           80 ELCLVATTSFSGDLLFYRITREDET-----------------------------------KKVIFEKLDLLDSDMKKHSF  124 (397)
T ss_dssp             EEEEEEEEETTSCEEEEEEEECTTT-----------------------------------CCEEEEEECCSCTTGGGSCE
T ss_pred             cccEEEEEcCCCCEEEEEccCCccc-----------------------------------ccccceeecccccccCCCcE
Confidence              99999999999999999864320                                   00013556667     5899


Q ss_pred             EEEEEc----cCCCee-EEEecCCCeEEEEEccC------CCCce---eEEe-------eccCCCeeEEEecCCCCCeEE
Q 016547          173 EDVTFC----PSSAQE-FCSVGDDSCLILWDARV------GTSPV---IKVE-------KAHDADLHCVDWNPLDDNLIL  231 (387)
Q Consensus       173 ~~~~~~----~~~~~~-l~~~~~dg~i~iwd~~~------~~~~~---~~~~-------~~~~~~i~~~~~~~~~~~~l~  231 (387)
                      .+++|+    |++ .. |++++.||.|++||++.      .+...   ...+       ..|...|.+++|+| ++ +|+
T Consensus       125 ~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~  201 (397)
T 1sq9_A          125 WALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIA  201 (397)
T ss_dssp             EEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEE
T ss_pred             EEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEE
Confidence            999999    998 67 99999999999999998      54221   0033       45889999999999 88 999


Q ss_pred             EeeCCCeEEEEEeccCCCCCCCCceEEecc---c---cceEEEEEEcCCCCeeEEEecCC---CeEEEEeCCCCCceecc
Q 016547          232 TGSADNSVRMFDRRNLTSNGVGSPINKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQ  302 (387)
Q Consensus       232 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~~~~~  302 (387)
                      +++.||.|++||+++      .+++..+..   |   ...|.+++|+|++++ |++++.|   +.|++||++...     
T Consensus       202 ~~~~dg~i~i~d~~~------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~-----  269 (397)
T 1sq9_A          202 TGFNNGTVQISELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGE-----  269 (397)
T ss_dssp             EECTTSEEEEEETTT------TEEEEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCC-----
T ss_pred             EEeCCCcEEEEECCC------CceeEEEeccccccccCCccceEEECCCCCE-EEEEecCCCCceEEEEECCCCc-----
Confidence            999999999999998      888899988   8   999999999999995 5688889   999999998752     


Q ss_pred             CCCCCCCCceeeeeecc-------------CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchh
Q 016547          303 GPRTTNYPAGLFFQHAG-------------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV  369 (387)
Q Consensus       303 ~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~  369 (387)
                                .+..+.+             |...|.+++|+|++++++        +|+.||.|++||+.      ++++
T Consensus       270 ----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~iwd~~------~~~~  325 (397)
T 1sq9_A          270 ----------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--------SAGWDGKLRFWDVK------TKER  325 (397)
T ss_dssp             ----------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEE--------EEETTSEEEEEETT------TTEE
T ss_pred             ----------ccceeccCcccccccccccccCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEcC------CCce
Confidence                      3445555             899999999999999877        66677999999999      6788


Q ss_pred             hhhhh------cc---------------CceEEEeeecC
Q 016547          370 LAELE------KF---------------KAHVISCTSKP  387 (387)
Q Consensus       370 ~~~~~------~~---------------~~~v~~~~f~P  387 (387)
                      +..+.      +|               ...|++++|+|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          326 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             eEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence            88888      77               99999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-39  Score=276.82  Aligned_cols=273  Identities=20%  Similarity=0.350  Sum_probs=228.9

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTE   99 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~   99 (387)
                      .+.....+|.+.|++++|+| ++++|++++ ||.|++||+.+....         .....+.  +|.. .|.+++|+|++
T Consensus        42 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~  109 (337)
T 1gxr_A           42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNK---------SPVSQLDCLNRDN-YIRSCKLLPDG  109 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCC---------SCSEEEECSCTTS-BEEEEEECTTS
T ss_pred             cccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCce---------eeeecccccCCCC-cEEEEEEcCCC
Confidence            34556678999999999999 889999998 999999999876322         2333343  6666 79999999999


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      ++|++++.|+.|++||+.++..                                      .....+..|...|.+++|+|
T Consensus       110 ~~l~~~~~d~~i~~~d~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~  151 (337)
T 1gxr_A          110 CTLIVGGEASTLSIWDLAAPTP--------------------------------------RIKAELTSSAPACYALAISP  151 (337)
T ss_dssp             SEEEEEESSSEEEEEECCCC----------------------------------------EEEEEEECSSSCEEEEEECT
T ss_pred             CEEEEEcCCCcEEEEECCCCCc--------------------------------------ceeeecccCCCceEEEEECC
Confidence            9999999999999999975421                                      12355678889999999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      ++ .++++++.||.|++||+++++  ....+..|...+.+++|+| ++++|++++.||.|++||+++      ++.+..+
T Consensus       152 ~~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------~~~~~~~  221 (337)
T 1gxr_A          152 DS-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQH  221 (337)
T ss_dssp             TS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEE
T ss_pred             CC-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCC------CceEeee
Confidence            98 789999999999999999876  5677778999999999999 999999999999999999998      7777766


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      . +...+.+++|+|+++. +++++.|+.|++||++...                ...+..|...|.+++|+|++++++  
T Consensus       222 ~-~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~--  281 (337)
T 1gxr_A          222 D-FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD----------------KYQLHLHESCVLSLKFAYCGKWFV--  281 (337)
T ss_dssp             E-CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC----------------EEEECCCSSCEEEEEECTTSSEEE--
T ss_pred             c-CCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCC----------------eEEEcCCccceeEEEECCCCCEEE--
Confidence            5 7788999999999996 5688899999999998742                334578999999999999999877  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                            +++.||.|++|++.      +++.+. ...|...|.+++|+|
T Consensus       282 ------~~~~dg~i~~~~~~------~~~~~~-~~~~~~~v~~~~~s~  316 (337)
T 1gxr_A          282 ------STGKDNLLNAWRTP------YGASIF-QSKESSSVLSCDISV  316 (337)
T ss_dssp             ------EEETTSEEEEEETT------TCCEEE-EEECSSCEEEEEECT
T ss_pred             ------EecCCCcEEEEECC------CCeEEE-EecCCCcEEEEEECC
Confidence                  66667999999999      555553 345889999999987

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.8e-41  Score=296.41  Aligned_cols=290  Identities=14%  Similarity=0.147  Sum_probs=217.3

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s  104 (387)
                      ...+|...|+||+|+|.++++||+|+.||+|+|||+.+.+.          .....+.+|.+ .|++|+|+| ++++|++
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~----------~~~~~~~gH~~-~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK----------PTFIKGIGAGG-SITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC----------CEEECCCSSSC-CCCEEEECSSCTTEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc----------eeEEEccCCCC-CEEEEEEeCCCCCEEEE
Confidence            34579999999999997888999999999999999987721          23344568887 799999998 6889999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.||+|++||+++.....                                      ......+...+.+++|+|++ .+
T Consensus       183 ~s~D~~v~iwd~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-~~  223 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNILRV--------------------------------------FASSDTINIWFCSLDVSASS-RM  223 (435)
T ss_dssp             ECSSSCEEEEETTSCEEEE--------------------------------------EECCSSCSCCCCCEEEETTT-TE
T ss_pred             EeCCCEEEEeeccCCceeE--------------------------------------EeccCCCCccEEEEEECCCC-CE
Confidence            9999999999997532110                                      01112334567899999998 89


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      |++|+.||.|++||++...   +..+..|...|++++|+|....+|++|+.|+.|++||+++...   ...+....+|..
T Consensus       224 l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~  297 (435)
T 4e54_B          224 VVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRH  297 (435)
T ss_dssp             EEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSS
T ss_pred             EEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccc
Confidence            9999999999999997543   5567789999999999994445888999999999999987321   122334467999


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      .|++++|+|++.+ |++++.||.|+|||+...........+..         .......+....|+|++..++++.+.|.
T Consensus       298 ~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~  367 (435)
T 4e54_B          298 PVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLIPHPH---------RHFQHLTPIKAAWHPRYNLIVVGRYPDP  367 (435)
T ss_dssp             CEEECCBCTTSSE-EEEEESSSCEEEEESSSSSSEEEECCCCC---------CCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred             cccceeECCCCCe-eEEEcCCCEEEEEECCCCccceEEecccc---------cccccceeEEEEEcCCCCEEEEEEcCCC
Confidence            9999999999996 57999999999999998644322111100         0001112345567777776666555442


Q ss_pred             ----CCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEe-eecC
Q 016547          345 ----DSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISC-TSKP  387 (387)
Q Consensus       345 ----~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~-~f~P  387 (387)
                          +++..++.|++||..      +++++..+. +|...|.++ +|+|
T Consensus       368 ~~~~~~~~~~~~i~iwd~~------~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          368 NFKSCTPYELRTIDVFDGN------SGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             TSCCSSTTCCCCEEEECSS------SCCEEEEECCSSCCCCCCEEEECT
T ss_pred             CeEEEEecCCCEEEEEECC------CCcEEEEEeCCCCCcEEEEEEECC
Confidence                145566899999999      788777764 678888887 6887

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-40  Score=275.58  Aligned_cols=266  Identities=20%  Similarity=0.251  Sum_probs=227.8

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.+|.+.|++++| | ++++|++|+.||.|++||+.+.            .....+..|.. .|.+++|+|++++|
T Consensus        10 ~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l   74 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQG-FLNSVCYDSEKELL   74 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSS-CEEEEEEETTTTEE
T ss_pred             HHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCc-cEEEEEECCCCCEE
Confidence            34556789999999999 7 7889999999999999999887            66777888876 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.||.|++|++....                                     ..+....+..|...|.++.|  ++ 
T Consensus        75 ~~~~~dg~i~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~i~~~~~--~~-  114 (313)
T 3odt_A           75 LFGGKDTMINGVPLFATS-------------------------------------GEDPLYTLIGHQGNVCSLSF--QD-  114 (313)
T ss_dssp             EEEETTSCEEEEETTCCT-------------------------------------TSCC-CEECCCSSCEEEEEE--ET-
T ss_pred             EEecCCCeEEEEEeeecC-------------------------------------CCCcccchhhcccCEEEEEe--cC-
Confidence            999999999999997531                                     22344667889999999999  34 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-  261 (387)
                      .++++++.||.|++||  ..+  ....+..|...+.++++.|.+++++++++.||.|++||.        .+....+.. 
T Consensus       115 ~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--------~~~~~~~~~~  182 (313)
T 3odt_A          115 GVVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--------DKVIKTFSGI  182 (313)
T ss_dssp             TEEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--------TEEEEEECSS
T ss_pred             CEEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--------CceEEEEecc
Confidence            6899999999999999  333  566777899999999998878899999999999999993        556777776 


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...+.+++|+|++.  +++++.||.|++||++..               ..+..+.+|...|++++|+|++ .++    
T Consensus       183 ~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~~-~l~----  240 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG---------------DVLRTYEGHESFVYCIKLLPNG-DIV----  240 (313)
T ss_dssp             CSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTS-CEE----
T ss_pred             CcccEEEEEEcCCCe--EEEccCCCeEEEEECCch---------------hhhhhhhcCCceEEEEEEecCC-CEE----
Confidence            899999999999997  568999999999999875               3466678899999999999998 455    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +++.||.|++||+.      +++++..+..|...|.+++|+|
T Consensus       241 ----~~~~dg~v~iwd~~------~~~~~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          241 ----SCGEDRTVRIWSKE------NGSLKQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             ----EEETTSEEEEECTT------TCCEEEEEECSSSCEEEEEECT
T ss_pred             ----EEecCCEEEEEECC------CCceeEEEeccCceEEEEEEcc
Confidence                55666999999999      7888899999999999999987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.8e-40  Score=278.68  Aligned_cols=260  Identities=20%  Similarity=0.310  Sum_probs=204.2

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+.++            +....+.+|.. .|.+++|+|++++|++
T Consensus        70 ~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~------------~~~~~~~~h~~-~v~~v~~sp~~~~l~s  135 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG------------TTYKRFVGHQS-EVYSVAFSPDNRQILS  135 (343)
T ss_dssp             EEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS------------CEEEEEECCCS-CEEEEEECSSTTEEEE
T ss_pred             chhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------cEEEEEcCCCC-cEEEEEECCCCCEEEE
Confidence            44568999999999999 8899999999999999999988            67788999998 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC--
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--  182 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  182 (387)
                      ++.|++|++||+.......                                      ......|...|.+++|+|++.  
T Consensus       136 ~~~d~~i~~wd~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R          136 AGAEREIKLWNILGECKFS--------------------------------------SAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             EETTSCEEEEESSSCEEEE--------------------------------------CCTTTSCSSCEEEEEECCCCCSC
T ss_pred             EcCCCEEEEEeccCCceee--------------------------------------eecccCCCceeeeeeeccccccc
Confidence            9999999999986321100                                      011236888999999999862  


Q ss_pred             -------eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          183 -------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       183 -------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                             .++++++.|+.|++||.. .+  ....+..|...|.+++|+| ++++|++|+.||.|++||++..     ..+
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~-----~~~  248 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNL-----TYP  248 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCC-----SSC
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCC-----ccc
Confidence                   579999999999999943 22  4567788999999999999 9999999999999999999542     334


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec-cCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE-QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      ...+. +...|.+++|+|+++. ++++ .|+.|++||+........ ....   .+........+|...|++++|+|+++
T Consensus       249 ~~~~~-~~~~v~~v~~sp~~~~-la~~-~d~~v~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~g~  322 (343)
T 2xzm_R          249 QREFD-AGSTINQIAFNPKLQW-VAVG-TDQGVKIFNLMTQSKAPVCTIEA---EPITKAEGQKGKNPQCTSLAWNALGK  322 (343)
T ss_dssp             SEEEE-CSSCEEEEEECSSSCE-EEEE-ESSCEEEEESSSCCSCSEEECCC---CSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred             ceeec-CCCcEEEEEECCCCCE-EEEE-CCCCEEEEEeCCCCCCceEEeec---CcchhhhhhcCCCCceEEEEECCCCC
Confidence            44443 4567999999999984 5444 588899999986432210 0000   00000111247888999999999999


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +|+        +|+.||+|++|++.
T Consensus       323 ~l~--------sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          323 KLF--------AGFTDGVIRTFSFE  339 (343)
T ss_dssp             CEE--------EEETTSEEEEEEEE
T ss_pred             eEE--------EecCCceEEEEEEE
Confidence            887        77778999999987

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5e-40  Score=288.77  Aligned_cols=293  Identities=35%  Similarity=0.684  Sum_probs=230.1

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT   98 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~   98 (387)
                      .+.++....++|.+.|++++|+|.++.+||+|+.||.|++||+........  ......+...+.+|.. .|.+++|+|+
T Consensus       116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~-~v~~l~~~~~  192 (430)
T 2xyi_A          116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQK-EGYGLSWNPN  192 (430)
T ss_dssp             --CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSS-CCCCEEECTT
T ss_pred             CCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCC-CeEEEEeCCC
Confidence            345666778899999999999995588999999999999999987322111  0112367788899988 6899999999


Q ss_pred             CC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           99 EP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        99 ~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      +. +|++|+.||.|++|++........                                 .......+..|...|.+++|
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~v~~  239 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHR---------------------------------VIDAKNIFTGHTAVVEDVAW  239 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGG---------------------------------EEECSEEECCCSSCEEEEEE
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCc---------------------------------eeccceeecCCCCCEeeeEE
Confidence            88 999999999999999986321100                                 00123556789999999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCC-CceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +|+++.+|++++.||.|++||+++.. ......+..|...|++++|+| ++. +|++|+.||.|++||++..     ..+
T Consensus       240 ~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~-----~~~  313 (430)
T 2xyi_A          240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNL-----KLK  313 (430)
T ss_dssp             CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCT-----TSC
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCC-----CCC
Confidence            99665899999999999999999763 124556678999999999999 665 7999999999999999973     467


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +..+..|...|.+++|+|+++++|++++.|+.|+|||+.......... .....+..++..+.+|...|++++|+|++++
T Consensus       314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  392 (430)
T 2xyi_A          314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPW  392 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH-HHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred             eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc-ccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence            888999999999999999998788999999999999998743221100 0001123567788899999999999999997


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCCC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ++++++       .||.|+||++...
T Consensus       393 ~l~s~s-------~dg~i~iw~~~~~  411 (430)
T 2xyi_A          393 IICSVS-------EDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEEE-------TTSEEEEEEECHH
T ss_pred             EEEEEE-------CCCCEEEeEcccc
Confidence            777555       4599999999843

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-41  Score=299.43  Aligned_cols=262  Identities=11%  Similarity=0.064  Sum_probs=199.6

Q ss_pred             eeecCCCcEEEEEecCCC-C-------cEEEE-------------------ecCCCcEEEEeccCCCCcccccCCCCCCC
Q 016547           26 KTIIHPGEVNRIRELPQN-T-------KIVAT-------------------HTDSPDVLIWDVEAQPNRHAVLGATNSRP   78 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~-~-------~~l~t-------------------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~   78 (387)
                      ..+.+.+.|.+|+|+|.. +       ++||+                   ++.|++|+|||+.+++...        ..
T Consensus       128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~--------~~  199 (524)
T 2j04_B          128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC--------VK  199 (524)
T ss_dssp             EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE--------EE
T ss_pred             EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc--------eE
Confidence            345578999999999942 1       56666                   4578899999998763110        11


Q ss_pred             eEEEeccCCCceEEEEECCC------CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCC
Q 016547           79 DLILTGHQDNAEFALAMCPT------EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK  152 (387)
Q Consensus        79 ~~~~~~h~~~~v~~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (387)
                      ...+.+|.+ .|.+++|+|+      +.+|++++.||+|++||+.++.......                          
T Consensus       200 ~~~l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--------------------------  252 (524)
T 2j04_B          200 VQTIVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--------------------------  252 (524)
T ss_dssp             EEEEEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--------------------------
T ss_pred             EEEEEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--------------------------
Confidence            234566665 6999999996      5799999999999999997543210000                          


Q ss_pred             CCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEE--EecCCCC-Ce
Q 016547          153 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDD-NL  229 (387)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~~  229 (387)
                         .....+...+.+|...|++++|++++  .|++|+.||+|++||++++.. ....+..|...|+++  +|+| ++ .+
T Consensus       253 ---~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~~  325 (524)
T 2j04_B          253 ---KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDTV  325 (524)
T ss_dssp             ---ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred             ---eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCeE
Confidence               00112335678899999999999864  799999999999999987653 344577899999999  5677 76 89


Q ss_pred             EEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547          230 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       230 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  307 (387)
                      |++|+.|++|+|||+++      ++++..+.+|..  .|.+++|+|+++. +++++.|+.|++||++..           
T Consensus       326 laS~S~D~tvklWD~~~------~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~-----------  387 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKD------IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAA-----------  387 (524)
T ss_dssp             EEEEETTSEEEEECGGG------HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCT-----------
T ss_pred             EEEeccCCeEEEEECCC------CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccc-----------
Confidence            99999999999999998      677777776653  4789999999985 678899999999999875           


Q ss_pred             CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                          .+...+.+|.+.|++++|+|++++++        +|+.||+|++||+.
T Consensus       388 ----~~~~~l~gH~~~V~sva~Sp~g~~l~--------Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          388 ----FAVHPLVSRETTITAIGVSRLHPMVL--------AGSADGSLIITNAA  427 (524)
T ss_dssp             ----TCCEEEEECSSCEEEEECCSSCCBCE--------EEETTTEEECCBSC
T ss_pred             ----ccceeeecCCCceEEEEeCCCCCeEE--------EEECCCEEEEEech
Confidence                22445678999999999999999877        67777999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.4e-40  Score=283.59  Aligned_cols=247  Identities=22%  Similarity=0.394  Sum_probs=203.1

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      ...|++++|+| ++++|++|+.||+|++||++++            +....+.+|.. .|.+++|+|++++|++++.|++
T Consensus       123 ~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~  188 (393)
T 1erj_A          123 DLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRT  188 (393)
T ss_dssp             CCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCc
Confidence            34599999999 8999999999999999999988            67788999998 7999999999999999999999


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      |++||++++...                                        ..+ .+...+.+++|+|.++.++++++.
T Consensus       189 v~iwd~~~~~~~----------------------------------------~~~-~~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          189 VRIWDLRTGQCS----------------------------------------LTL-SIEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEEEECCCCeeE----------------------------------------EEE-EcCCCcEEEEEECCCCCEEEEEcC
Confidence            999999864321                                        222 245679999999943389999999


Q ss_pred             CCeEEEEEccCCCCceeEEe-------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------CCCCceE
Q 016547          191 DSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GVGSPIN  257 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~  257 (387)
                      |+.|++||+++++  ....+       .+|...|.+++|+| ++++|++|+.||.|++||++.....      ..+.+..
T Consensus       228 d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~  304 (393)
T 1erj_A          228 DRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV  304 (393)
T ss_dssp             TSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred             CCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE
Confidence            9999999998876  33333       57889999999999 9999999999999999999863210      1134566


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc------
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA------  331 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------  331 (387)
                      .+.+|...|.+++|+|++++ |++++.|+.|++||+...               ..+..+.+|...|.+++|++      
T Consensus       305 ~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~---------------~~~~~l~~h~~~v~~v~~~~~~~~~p  368 (393)
T 1erj_A          305 TYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPLLMLQGHRNSVISVAVANGSSLGP  368 (393)
T ss_dssp             EEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred             EEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC---------------eEEEEECCCCCCEEEEEecCCcCcCC
Confidence            78889999999999999996 579999999999999875               34567789999999999987      


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++++++        ||+.||+|+||++.
T Consensus       369 ~~~~l~--------sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          369 EYNVFA--------TGSGDCKARIWKYK  388 (393)
T ss_dssp             TCEEEE--------EEETTSEEEEEEEE
T ss_pred             CCCEEE--------EECCCCcEEECccc
Confidence            455554        66667999999987

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-40  Score=288.26  Aligned_cols=266  Identities=23%  Similarity=0.345  Sum_probs=212.7

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYV  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l  102 (387)
                      .....+|...|.+++|+| ++++|++|+.|+.|++||+.+.....     ........+.+|.+ .|.++.|+|+ +..|
T Consensus       101 ~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l  173 (380)
T 3iz6_a          101 THAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRD-----GNMPVSRVLTGHKG-YASSCQYVPDQETRL  173 (380)
T ss_dssp             EEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCC-----CSSTTCCBCCCCSS-CCCCCBCCSSSSSCE
T ss_pred             ceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCcccc-----CCccceeeccCCCc-ceEEEEEecCCCCEE
Confidence            345567999999999999 89999999999999999997653211     11234456788987 6889999997 4579


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.|++|++||+.++........                                   ....+|...|.++.|++.++
T Consensus       174 ~s~s~D~~i~~wd~~~~~~~~~~~~-----------------------------------~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          174 ITGSGDQTCVLWDVTTGQRISIFGS-----------------------------------EFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             EEECTTSCEEEECTTTCCEEEEECC-----------------------------------CSSSSCCSCEEEEEECSSSC
T ss_pred             EEECCCCcEEEEEcCCCcEEEEeec-----------------------------------ccCCCCccCeEEEEeecCCC
Confidence            9999999999999987543221111                                   11257889999999988544


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .+|++|+.|+.|++||++.... ....+.+|...|++++|+| ++.+|++|+.||.|++||+++      +..+..+..+
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~~  290 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNRE  290 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTT------TEEEEEECCC
T ss_pred             CEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCC------CcEEEEeccc
Confidence            8999999999999999985432 4667788999999999999 999999999999999999998      7777776544


Q ss_pred             c-------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          263 S-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       263 ~-------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      .       ..|.+++|+|++++ +++|+.||.|++||+........           +.....+|.+.|++++|+|++.+
T Consensus       291 ~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~~~~~~-----------~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCYVWDTLLAEMVLN-----------LGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEEEEETTTCCEEEE-----------ECCSCSSCCCCCCEEEECSSSSE
T ss_pred             ccccccccCceEEEEECCCCCE-EEEEECCCCEEEEECCCCceEEE-----------EecccCCCCCceEEEEECCCCCE
Confidence            3       24889999999996 57999999999999987432110           11112679999999999999998


Q ss_pred             EEEEecCCCCCCCCCceEEEEecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      |+        ||+.||+|++|++.
T Consensus       359 l~--------sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          359 LC--------TGSWDKNLKIWAFS  374 (380)
T ss_dssp             EE--------EECTTSCEEEEECC
T ss_pred             EE--------EeeCCCCEEEEecC
Confidence            87        88888999999998

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-40  Score=290.84  Aligned_cols=265  Identities=17%  Similarity=0.333  Sum_probs=214.7

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL  103 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~  103 (387)
                      ...+.|.+.|++++|+| ++++|++|+.||.|++||+.....        .......+.+|.. .|.+++|+|+ +++|+
T Consensus        61 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~  130 (416)
T 2pm9_A           61 IASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANN--------AINSMARFSNHSS-SVKTVKFNAKQDNVLA  130 (416)
T ss_dssp             SCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTS--------CCCEEEECCCSSS-CCCEEEECSSSTTBEE
T ss_pred             EEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccc--------cccchhhccCCcc-ceEEEEEcCCCCCEEE
Confidence            34457999999999999 889999999999999999987311        1146677888987 7999999998 89999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|+.|++||+.+........                               .......+..|...|.+++|+|+++.
T Consensus       131 s~~~dg~v~iwd~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~  179 (416)
T 2pm9_A          131 SGGNNGEIFIWDMNKCTESPSNY-------------------------------TPLTPGQSMSSVDEVISLAWNQSLAH  179 (416)
T ss_dssp             EECSSSCEEBCBTTTTSSCTTTC-------------------------------CCBCCCCSCCSSCCCCEEEECSSCTT
T ss_pred             EEcCCCeEEEEECCCCccccccc-------------------------------cccccccccCCCCCeeEEEeCCCCCc
Confidence            99999999999998653110000                               00011234578899999999999558


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeecc------CCCeeEEEecCCCC-CeEEEeeCCC---eEEEEEeccCCCCCCC
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHCVDWNPLDD-NLILTGSADN---SVRMFDRRNLTSNGVG  253 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~~~~~~~~  253 (387)
                      ++++++.||.|++||+++++  ....+..+      ...|.+++|+| ++ .++++++.|+   .|++||+++.     .
T Consensus       180 ~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~~~~i~~~d~~~~-----~  251 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHP-KNSTRVATATGSDNDPSILIWDLRNA-----N  251 (416)
T ss_dssp             EEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECS-SCTTEEEEEECCSSSCCCCEEETTST-----T
T ss_pred             EEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECC-CCCCEEEEEECCCCCceEEEEeCCCC-----C
Confidence            99999999999999999876  45555554      78899999999 65 7999999999   9999999972     2


Q ss_pred             CceEEec-cccceEEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          254 SPINKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       254 ~~~~~~~-~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      .++..+. +|...|.+++|+| +++ +|++++.|+.|++||++..               ..+..+.+|...|++++|+|
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~---------------~~~~~~~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESA---------------EQLSQFPARGNWCFKTKFAP  315 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSC---------------CEEEEEECSSSCCCCEEECT
T ss_pred             CCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCC---------------ccceeecCCCCceEEEEECC
Confidence            5677777 8999999999999 777 5679999999999999875               34666788999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      +++.+++       +++.||.|++|++...
T Consensus       316 ~~~~~l~-------s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          316 EAPDLFA-------CASFDNKIEVQTLQNL  338 (416)
T ss_dssp             TCTTEEE-------ECCSSSEEEEEESCCC
T ss_pred             CCCCEEE-------EEecCCcEEEEEccCC
Confidence            9944444       6677799999999854

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-39  Score=303.80  Aligned_cols=254  Identities=20%  Similarity=0.392  Sum_probs=208.9

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.+|.+.|++++|+|+++++|+||+.||+|++||+.......       ......+.+|.. .|.+++|+|++++|+
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~v~~s~~g~~l~  446 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSH-FVEDVVLSSDGQFAL  446 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSS-CEEEEEECTTSSEEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCC-cEEEEEECCCCCEEE
Confidence            345668999999999999778899999999999999998652111       134567889998 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.||+|++||+.++.                                        ....+.+|...|.+++|+|++ .
T Consensus       447 sgs~Dg~v~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~s~~~-~  485 (694)
T 3dm0_A          447 SGSWDGELRLWDLAAGV----------------------------------------STRRFVGHTKDVLSVAFSLDN-R  485 (694)
T ss_dssp             EEETTSEEEEEETTTTE----------------------------------------EEEEEECCSSCEEEEEECTTS-S
T ss_pred             EEeCCCcEEEEECCCCc----------------------------------------ceeEEeCCCCCEEEEEEeCCC-C
Confidence            99999999999997542                                        235678899999999999998 7


Q ss_pred             eEEEecCCCeEEEEEccCCCCcee-EEeeccCCCeeEEEecCCCC--CeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVI-KVEKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      +|++++.|++|++||......... ....+|...|.+++|+| ++  ..+++++.|+.|++||+++      .+....+.
T Consensus       486 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~  558 (694)
T 3dm0_A          486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLA  558 (694)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEEC
T ss_pred             EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEc
Confidence            899999999999999865431101 11246888999999999 65  5899999999999999998      88889999


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      +|...|++++|+|++++ |++++.||.|++||++...               .+..+. +...|.+++|+|++.++++ +
T Consensus       559 ~h~~~v~~v~~spdg~~-l~sg~~Dg~i~iwd~~~~~---------------~~~~~~-~~~~v~~~~~sp~~~~l~~-~  620 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDGSL-CASGGKDGVVLLWDLAEGK---------------KLYSLE-ANSVIHALCFSPNRYWLCA-A  620 (694)
T ss_dssp             CCSSCEEEEEECTTSSE-EEEEETTSBCEEEETTTTE---------------EEECCB-CSSCEEEEEECSSSSEEEE-E
T ss_pred             CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCc---------------eEEEec-CCCcEEEEEEcCCCcEEEE-E
Confidence            99999999999999995 6799999999999998752               233333 4568999999998875542 2


Q ss_pred             cCCCCCCCCCceEEEEecC
Q 016547          341 SDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~  359 (387)
                              .|+.|++||+.
T Consensus       621 --------~~~~i~iwd~~  631 (694)
T 3dm0_A          621 --------TEHGIKIWDLE  631 (694)
T ss_dssp             --------ETTEEEEEETT
T ss_pred             --------cCCCEEEEECC
Confidence                    23679999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7e-40  Score=282.90  Aligned_cols=255  Identities=13%  Similarity=0.158  Sum_probs=212.2

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .|.++|++++|+| ++++|++|+.||.|++||+.+.+          ......+.+|.. .|.+++|+|++++|++++.|
T Consensus         6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d   73 (372)
T 1k8k_C            6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTD   73 (372)
T ss_dssp             SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEEETTTTEEEEEETT
T ss_pred             ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecCCCC-cccEEEEeCCCCEEEEEcCC
Confidence            4999999999999 88999999999999999998871          016778889987 79999999999999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.|++||+.++...                                      ....+..|...|.+++|+|++ .+++++
T Consensus        74 g~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~  114 (372)
T 1k8k_C           74 RNAYVWTLKGRTWK--------------------------------------PTLVILRINRAARCVRWAPNE-KKFAVG  114 (372)
T ss_dssp             SCEEEEEEETTEEE--------------------------------------EEEECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred             CeEEEEECCCCeee--------------------------------------eeEEeecCCCceeEEEECCCC-CEEEEE
Confidence            99999999754211                                      113345688899999999998 889999


Q ss_pred             cCCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC------------CCCCC
Q 016547          189 GDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS------------NGVGS  254 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------~~~~~  254 (387)
                      +.|+.|++||++.....  .......|...|.+++|+| ++++|++++.||.|++||++....            ...++
T Consensus       115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence            99999999999987631  2233356889999999999 999999999999999999752110            01167


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      .+..+..|...|.+++|+|++++ |++++.|+.|++||++..               ..+..+..|...|.+++|+|++.
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~  257 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESS  257 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTE
T ss_pred             heEecCCCCCeEEEEEECCCCCE-EEEEeCCCEEEEEECCCC---------------ceeEEEccCCCCeEEEEEecCCC
Confidence            88888899999999999999985 679999999999999875               34566778999999999999987


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecCC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +++        +| .|+.|++|++..
T Consensus       258 ~l~--------~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          258 LVA--------AG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEE--------EE-TTSSCEEEEEET
T ss_pred             EEE--------EE-eCCeEEEEEccC
Confidence            655        33 569999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=281.45  Aligned_cols=262  Identities=19%  Similarity=0.294  Sum_probs=216.4

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~  103 (387)
                      .+.+|.+.|++++|+| ++++||+|+.||.|+|||+...          ..+....+.+|.. .|++++|+++  +++|+
T Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A            6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred             EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCC-cEEEEEeCCCCCCCEEE
Confidence            4568999999999999 8899999999999999999843          1156677889987 7999999987  99999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  181 (387)
                      +++.||.|++||+.++..                                      .....+..|...|.+++|+|+  +
T Consensus        74 s~~~dg~v~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EeccCCEEEEEEcCCCce--------------------------------------eEeeeecCCCcceEEEEeCCCCCC
Confidence            999999999999986421                                      123566778999999999999  6


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC------------CCCeEEEeeCCCeEEEEEeccCCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS  249 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~l~~~~~dg~i~~~d~~~~~~  249 (387)
                       .++++++.|+.|++||++.........+..|...|.+++|+|.            ++.+|++++.||.|++||++....
T Consensus       116 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  194 (379)
T 3jrp_A          116 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  194 (379)
T ss_dssp             -SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred             -CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence             7899999999999999998865456667789999999999994            489999999999999999987311


Q ss_pred             CCCCCceEEeccccceEEEEEEcCC---CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          250 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                      .  ...+..+.+|...|.+++|+|+   +. +|++++.||.|++||++.......          ........|...|++
T Consensus       195 ~--~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~  261 (379)
T 3jrp_A          195 T--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWR  261 (379)
T ss_dssp             E--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCE----------EEESSSSCCSSCEEE
T ss_pred             c--eeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccce----------eeeeccccCCCcEEE
Confidence            0  1345677889999999999999   66 578999999999999987532211          123333458889999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++|+|++++++        +++.||.|++|++.
T Consensus       262 ~~~s~~g~~l~--------~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          262 ASWSLSGNVLA--------LSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEECSSSCCEE--------EEESSSSEEEEEEE
T ss_pred             EEEcCCCCEEE--------EecCCCcEEEEeCC
Confidence            99999999887        56667999999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3e-39  Score=277.29  Aligned_cols=309  Identities=15%  Similarity=0.222  Sum_probs=229.4

Q ss_pred             cceeeeeeecCCCcEEEEEecCCCCcEEEEecC---CCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEE
Q 016547           20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAM   95 (387)
Q Consensus        20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~   95 (387)
                      |.+......+|.+.|++++|+|.+..++++|+.   ||.|++||+.++            +.... ..+|.. .|.+++|
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~------------~~~~~~~~~~~~-~v~~~~~   73 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG------------DLKLLREIEKAK-PIKCGTF   73 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS------------SEEEEEEEEESS-CEEEEEC
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC------------cccceeeecccC-cEEEEEE
Confidence            334445556799999999999955567778876   999999999987            33333 336765 7999999


Q ss_pred             CCC---CCEEEEecCCCeEEEEEcCCCc-CccccCCCcccC----------CCCCCceeccCCCCCCCCCCCCCCCCCC-
Q 016547           96 CPT---EPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKS----------AGSSGSIIKQSPKPGDGNDKAADGPSVG-  160 (387)
Q Consensus        96 ~~~---~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  160 (387)
                      +|+   +++|++++.||.|++||+.++. ............          .......  ......++.+.+|+..... 
T Consensus        74 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~--l~~~~~d~~i~vwd~~~~~~  151 (357)
T 3i2n_A           74 GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE--IVTGSRDGTVKVWDPRQKDD  151 (357)
T ss_dssp             TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE--EEEEETTSCEEEECTTSCSS
T ss_pred             cCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE--EEEEeCCCeEEEEeCCCCCC
Confidence            998   6999999999999999998765 322222111100          0111111  1122346678888887776 


Q ss_pred             CceeecCCCC----CeEEEE----EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeE
Q 016547          161 PRGIYNGHED----TVEDVT----FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLI  230 (387)
Q Consensus       161 ~~~~~~~~~~----~v~~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l  230 (387)
                      +...+..|..    .+.+++    |+|++ .++++++.||.|++||+++++   ......|...|.+++|+|.  ++.+|
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l  227 (357)
T 3i2n_A          152 PVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA---LRWETNIKNGVCSLEFDRKDISMNKL  227 (357)
T ss_dssp             CSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE---EEEEEECSSCEEEEEESCSSSSCCEE
T ss_pred             cceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc---eeeecCCCCceEEEEcCCCCCCCCEE
Confidence            6677766554    899998    67888 889999999999999999877   3444678899999999985  57899


Q ss_pred             EEeeCCCeEEEEEeccCCCCCCCCceEEec-----cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547          231 LTGSADNSVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       231 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  305 (387)
                      ++++.||.|++||+++      .+++..+.     +|...|.+++|+|+++.+|++++.||.|++||++...........
T Consensus       228 ~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          228 VATSLEGKFHVFDMRT------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             EEEESTTEEEEEEEEE------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             EEECCCCeEEEEeCcC------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence            9999999999999998      55544443     899999999999999866789999999999999875443221111


Q ss_pred             CC----CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          306 TT----NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       306 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..    ......+..+.+|...|++++|+|++++++++++.|       |.|++||+..
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d-------~~i~iw~~~~  353 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD-------QTVRVLIVTK  353 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT-------SEEEEEEECC
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC-------CcEEEEECCC
Confidence            10    011246777889999999999999999988755544       9999999983

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.6e-40  Score=282.38  Aligned_cols=280  Identities=15%  Similarity=0.232  Sum_probs=222.9

Q ss_pred             ecCCCcEEEEEecCC---CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC----CCceEEEEECCC--
Q 016547           28 IIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPT--   98 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~~~~--   98 (387)
                      .+|.++|++++|+|.   ....+++++.++.|++||+.++            ..+..+..|.    ...|++++|+|+  
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------GEIRLLQSYVDADADENFYTCAWTYDSN   82 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------GCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------cEEEeeeeccccCCCCcEEEEEeccCCC
Confidence            479999999999983   3445556666679999999977            4444454432    236999999998  


Q ss_pred             --CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           99 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        99 --~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                        +++|++|+.||.|++||+.++                                        +.+..+.+|...|.+++
T Consensus        83 ~~~~~l~~~~~dg~i~v~d~~~~----------------------------------------~~~~~~~~~~~~i~~~~  122 (366)
T 3k26_A           83 TSHPLLAVAGSRGIIRIINPITM----------------------------------------QCIKHYVGHGNAINELK  122 (366)
T ss_dssp             TCCEEEEEEETTCEEEEECTTTC----------------------------------------CEEEEEESCCSCEEEEE
T ss_pred             CCCCEEEEecCCCEEEEEEchhc----------------------------------------eEeeeecCCCCcEEEEE
Confidence              679999999999999998753                                        23466778999999999


Q ss_pred             Ecc-CCCeeEEEecCCCeEEEEEccCCCCceeEEe---eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547          177 FCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  252 (387)
Q Consensus       177 ~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  252 (387)
                      |+| ++ .+|++++.||.|++||+++++  ....+   ..|...|.+++|+| ++++|++++.||.|++||+++      
T Consensus       123 ~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------  192 (366)
T 3k26_A          123 FHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------  192 (366)
T ss_dssp             ECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------
T ss_pred             ECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------
Confidence            999 65 899999999999999999876  45555   57999999999999 999999999999999999987      


Q ss_pred             CCceE----------------------------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547          253 GSPIN----------------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       253 ~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  304 (387)
                      ++.+.                            ....|...|.+++|+  +. ++++++.|+.|++||++..........
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~  269 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIK  269 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccc
Confidence            33332                            233489999999998  45 567999999999999988644332221


Q ss_pred             CCCCCCceeeeeeccCCCCeeEEEEccC--CCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhh----hhhcc--
Q 016547          305 RTTNYPAGLFFQHAGHRDKVVDFHWNAS--DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA----ELEKF--  376 (387)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~--  376 (387)
                      . .......+..+.+|...|++++|+|+  +.+++        +|+.||.|++||+.      .++++.    .+.+|  
T Consensus       270 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~--------~~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~  334 (366)
T 3k26_A          270 P-SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA--------LGNQVGKLYVWDLE------VEDPHKAKCTTLTHHKC  334 (366)
T ss_dssp             T-TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE--------EECTTSCEEEEECC------SSSGGGCEEEEECCTTC
T ss_pred             c-CCcchheeccccccCCcEEEEEEcCCCCCcEEE--------EEecCCcEEEEECC------CCCCccccceEEccccc
Confidence            1 11223457778889999999999999  88777        77778999999999      555444    67777  


Q ss_pred             CceEEEeeecC
Q 016547          377 KAHVISCTSKP  387 (387)
Q Consensus       377 ~~~v~~~~f~P  387 (387)
                      ...|++++|+|
T Consensus       335 ~~~v~~~~~s~  345 (366)
T 3k26_A          335 GAAIRQTSFSR  345 (366)
T ss_dssp             CSCEEEEEECT
T ss_pred             CCceEEEEeCC
Confidence            79999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4e-39  Score=271.26  Aligned_cols=248  Identities=21%  Similarity=0.402  Sum_probs=209.8

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ...+|...|.+++|+| ++++|++|+.||.|++||++++            +.+..+.+|.. .|.+++|+|++++|++|
T Consensus        60 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~  125 (312)
T 4ery_A           60 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSN-YVFCCNFNPQSNLIVSG  125 (312)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEE
T ss_pred             hhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEcCCCC-CEEEEEEcCCCCEEEEE
Confidence            4557999999999999 8899999999999999999988            67788999987 79999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|+.|++||++++.                                        ....+..|...|.+++|+|++ .++
T Consensus       126 ~~d~~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l  164 (312)
T 4ery_A          126 SFDESVRIWDVKTGK----------------------------------------CLKTLPAHSDPVSAVHFNRDG-SLI  164 (312)
T ss_dssp             ETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEECTTS-SEE
T ss_pred             eCCCcEEEEECCCCE----------------------------------------EEEEecCCCCcEEEEEEcCCC-CEE
Confidence            999999999997532                                        235667889999999999998 789


Q ss_pred             EEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      ++++.||.|++||+++++  .... ...+...+..++|+| ++++|++++.||.|++||+++      ++.+..+.+|..
T Consensus       165 ~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~  235 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKN  235 (312)
T ss_dssp             EEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECSSCC
T ss_pred             EEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEEecCC
Confidence            999999999999999877  3333 345667899999999 999999999999999999998      888888888765


Q ss_pred             eEE--EEEEc-CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          265 AVL--CVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       265 ~i~--~~~~~-~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      .+.  ...++ +++. ++++|+.||.|++||+...               ..+..+.+|...|.+++|+|+++.++.+  
T Consensus       236 ~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~--  297 (312)
T 4ery_A          236 EKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIASA--  297 (312)
T ss_dssp             SSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEEEE--
T ss_pred             ceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceEEE--
Confidence            432  23344 4565 5779999999999999875               3467788999999999999999877632  


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                          +.+.|++|++|+.+
T Consensus       298 ----~~~~d~~i~~W~~d  311 (312)
T 4ery_A          298 ----ALENDKTIKLWKSD  311 (312)
T ss_dssp             ----ECTTTCCEEEEECC
T ss_pred             ----EccCCccEEEecCC
Confidence                12357999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.5e-39  Score=276.83  Aligned_cols=279  Identities=17%  Similarity=0.297  Sum_probs=217.1

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~  103 (387)
                      .+.+|.+.|++++|+| ++++||+|+.||.|++||+.+....        .+....+.+|.. .|.+++|+|  ++++|+
T Consensus         6 ~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~-~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDS-SIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             EECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSS-CEEEEEECCGGGCSEEE
T ss_pred             cCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCC-cEEEEEEcCCCCCCEEE
Confidence            3458999999999999 8899999999999999999876211        134566788887 799999999  699999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  181 (387)
                      +++.||.|++||++++.....                               ....+....+..|...|.+++|+|+  +
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~  124 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECS-------------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG  124 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTS-------------------------------SCSEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EEcCCCeEEEEecCCCccccc-------------------------------ccCcceeeeecccCCceeEEEEcCCCCC
Confidence            999999999999986532110                               0112345667789999999999999  7


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEE-----------eeccCCCeeEEEecCCC---CCeEEEeeCCCeEEEEEeccC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKV-----------EKAHDADLHCVDWNPLD---DNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~  247 (387)
                       .++++++.||.|++||+++.+......           ...|...+.+++|+| +   +.++++++.|+.+.+|+....
T Consensus       125 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~  202 (351)
T 3f3f_A          125 -LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP-SRFSPEKLAVSALEQAIIYQRGKDG  202 (351)
T ss_dssp             -SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC-CSSSCCEEEEEETTEEEEEEECTTS
T ss_pred             -cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc-CCCCCcEEEEecCCCcEEEEccCCC
Confidence             789999999999999998876321111           125778899999999 6   899999999999988877762


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCC---eeEEEecCCCeEEEEeCCCCCceeccCCCC------------------
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT------------------  306 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~------------------  306 (387)
                      .    ...+..+.+|...|.+++|+|++.   .+|++++.||.|++||++............                  
T Consensus       203 ~----~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (351)
T 3f3f_A          203 K----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG  278 (351)
T ss_dssp             C----EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------
T ss_pred             c----eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccc
Confidence            1    223777888999999999999982   367899999999999998743221110000                  


Q ss_pred             -------------CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          307 -------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       307 -------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                                   .......+..+.+|...|++++|+|++++|+        +|+.||.|++|++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          279 RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS--------SAGDDGKVRLWKAT  336 (351)
T ss_dssp             ------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred             ccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE--------EecCCCcEEEEecC
Confidence                         0012246677888999999999999998877        77777999999999

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-40  Score=289.32  Aligned_cols=313  Identities=14%  Similarity=0.167  Sum_probs=240.3

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEec----cCCCCcccccCCCCCCCeEEEec----------cC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV----EAQPNRHAVLGATNSRPDLILTG----------HQ   86 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~----------h~   86 (387)
                      .+......|.+.|++++|+| +++ +||+|+.||.|++||+    .+++....+      .....+..          |.
T Consensus        36 ~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  108 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTT  108 (425)
T ss_dssp             CEECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------C
T ss_pred             hhheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCC
Confidence            34455566889999999999 777 9999999999999999    776310000      01222222          55


Q ss_pred             CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCc----ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547           87 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  162 (387)
Q Consensus        87 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (387)
                      + .|++++|+|++++|++++.||.|++||.. +..........    ..........+.  ....++.+.+|+....+..
T Consensus       109 ~-~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          109 N-QVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHII--SMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             B-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCCSCEEEEEECTTSSEEE--EEETTCCEEEEETTTTEEE
T ss_pred             C-ceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeeccCCCccEEEEEECCCCCEEE--EEecCCeEEEEECCCCcEE
Confidence            4 79999999999999999999999999943 32222211110    001111111111  1223567778888888887


Q ss_pred             eeecCCCCC---------------eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC
Q 016547          163 GIYNGHEDT---------------VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD  227 (387)
Q Consensus       163 ~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (387)
                      ..+..+...               +.++.|+|++  .+++++.+|.|++||+++++  ....+..|...|.+++|+| ++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~  259 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TN  259 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TT
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CC
Confidence            888777776               9999999986  58899999999999999876  4566778999999999999 99


Q ss_pred             CeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547          228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       228 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  307 (387)
                      ++|++++.||.|++||+++      ++.+..+..|...|.+++|+|++  ++++++.|+.|++||++..           
T Consensus       260 ~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~-----------  320 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGN------GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN-----------  320 (425)
T ss_dssp             TEEEEEETTSCEEEECSSS------BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT-----------
T ss_pred             CEEEEEcCCCEEEEEECCC------CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC-----------
Confidence            9999999999999999998      88889999999999999999999  4678999999999999875           


Q ss_pred             CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccch-------------------
Q 016547          308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE-------------------  368 (387)
Q Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~-------------------  368 (387)
                          ..+..+..|...|.+++|+|++++++        +++.||.|++||+.      .++                   
T Consensus       321 ----~~~~~~~~~~~~i~~~~~s~~~~~l~--------~~~~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~  382 (425)
T 1r5m_A          321 ----TLLALSIVDGVPIFAGRISQDGQKYA--------VAFMDGQVNVYDLK------KLNSKSRSLYGNRDGILNPLPI  382 (425)
T ss_dssp             ----EEEEEEECTTCCEEEEEECTTSSEEE--------EEETTSCEEEEECH------HHHC--------------CEEC
T ss_pred             ----cEeEecccCCccEEEEEEcCCCCEEE--------EEECCCeEEEEECC------CCccceeeeecccccccCcccc
Confidence                34666778999999999999998877        66667999999998      566                   


Q ss_pred             -hhhhhhccCc--eEEEeeecC
Q 016547          369 -VLAELEKFKA--HVISCTSKP  387 (387)
Q Consensus       369 -~~~~~~~~~~--~v~~~~f~P  387 (387)
                       ++..+.+|..  .|.+++|+|
T Consensus       383 ~~~~~~~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          383 PLYASYQSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             CEEEEECCTTCCCCEEEEEECT
T ss_pred             hhhhhhcCcccCCceEEEEccC
Confidence             7888899976  999999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.1e-39  Score=307.75  Aligned_cols=271  Identities=21%  Similarity=0.290  Sum_probs=238.1

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++            .....+.+|.. .|.+++|+|++++|++
T Consensus         7 ~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~   72 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV   72 (814)
T ss_dssp             EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred             eeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCC-cEEEEEEeCCCCEEEE
Confidence            45568999999999999 8999999999999999999988            67788889987 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.||.|++||+.++.                                        ....+.+|...|.+++|+|++ .+
T Consensus        73 ~~~dg~i~vw~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~s~~~-~~  111 (814)
T 3mkq_A           73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY  111 (814)
T ss_dssp             EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred             EeCCCeEEEEECCCCc----------------------------------------EEEEEecCCCCEEEEEEeCCC-CE
Confidence            9999999999997542                                        336677899999999999999 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-  263 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-  263 (387)
                      +++++.||.|++||++++. .....+..|...|.+++|+|.++..|++++.||.|++||++.      ......+..+. 
T Consensus       112 l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~  184 (814)
T 3mkq_A          112 VLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE  184 (814)
T ss_dssp             EEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred             EEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCCC
Confidence            9999999999999998764 255677789999999999996678999999999999999987      66666666554 


Q ss_pred             ceEEEEEEcC--CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          264 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       264 ~~i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ..+.+++|+|  ++.+ +++++.||.|++||++..               .....+.+|...|.+++|+|++++++    
T Consensus       185 ~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~----  244 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIII----  244 (814)
T ss_dssp             TCCCEEEECCSTTCCE-EEEECTTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEE----
T ss_pred             CCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE----
Confidence            8899999999  8885 679999999999999874               34666788999999999999999777    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +|+.||.|++||+.      +++.+..+..|...|++++|+|
T Consensus       245 ----~~~~dg~v~vwd~~------~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          245 ----SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             ----EEETTSCEEEEETT------TCSEEEEECCSSSSEEEEEECT
T ss_pred             ----EEeCCCeEEEEECC------CCcEEEEeecCCCcEEEEEEcc
Confidence                66777999999999      7888889999999999999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-40  Score=291.04  Aligned_cols=277  Identities=14%  Similarity=0.307  Sum_probs=226.3

Q ss_pred             cCCCcEEEEEecCCCCcEEEEe----------cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATH----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT   98 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~   98 (387)
                      .+...|.+++|+|+...+|++|          +.||.|++||+.+....         ++...+ .|.. .|.+++|+|+
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~~~-~~~~-~v~~~~~s~~   78 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIASL-QVDS-KFNDLDWSHN   78 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSCCC-CCSS-CEEEEEECSS
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEEEE-ecCC-ceEEEEECCC
Confidence            3456789999999434599999          89999999999877321         122222 4555 6999999999


Q ss_pred             CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547           99 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus        99 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      +++|++++.||.|++||+.+...                                    .......+.+|...|.+++|+
T Consensus        79 ~~~l~~~~~dg~v~vw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~  122 (416)
T 2pm9_A           79 NKIIAGALDNGSLELYSTNEANN------------------------------------AINSMARFSNHSSSVKTVKFN  122 (416)
T ss_dssp             SSCEEEEESSSCEEEECCSSTTS------------------------------------CCCEEEECCCSSSCCCEEEEC
T ss_pred             CCeEEEEccCCeEEEeecccccc------------------------------------cccchhhccCCccceEEEEEc
Confidence            99999999999999999975210                                    112346678899999999999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCC------Cce-eEEeeccCCCeeEEEecCCC-CCeEEEeeCCCeEEEEEeccCCCC
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGT------SPV-IKVEKAHDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~------~~~-~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      |+++.+|++++.|+.|++||+++.+      ... ......|...|.+++|+| + +.+|++++.||.|++||+++    
T Consensus       123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~v~iwd~~~----  197 (416)
T 2pm9_A          123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-SLAHVFASAGSSNFASIWDLKA----  197 (416)
T ss_dssp             SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-SCTTEEEEESSSSCEEEEETTT----
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-CCCcEEEEEcCCCCEEEEECCC----
Confidence            9844899999999999999998875      221 223457889999999999 6 89999999999999999998    


Q ss_pred             CCCCceEEeccc------cceEEEEEEcCCCCeeEEEecCCC---eEEEEeCCCCCceeccCCCCCCCCceeeeeec-cC
Q 016547          251 GVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GH  320 (387)
Q Consensus       251 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  320 (387)
                        ++.+..+..+      ...|.+++|+|++..++++++.|+   .|++||++.....              ...+. +|
T Consensus       198 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~--------------~~~~~~~~  261 (416)
T 2pm9_A          198 --KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP--------------LQTLNQGH  261 (416)
T ss_dssp             --TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC--------------SBCCCSCC
T ss_pred             --CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC--------------cEEeecCc
Confidence              7888888776      788999999999866788999998   9999999974322              33445 79


Q ss_pred             CCCeeEEEEcc-CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          321 RDKVVDFHWNA-SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       321 ~~~v~~~~~~~-~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ...|++++|+| ++.+++        +++.||.|++||+.      +++++.++.+|...|.+++|+|
T Consensus       262 ~~~v~~~~~s~~~~~~l~--------s~~~dg~v~~wd~~------~~~~~~~~~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          262 QKGILSLDWCHQDEHLLL--------SSGRDNTVLLWNPE------SAEQLSQFPARGNWCFKTKFAP  315 (416)
T ss_dssp             SSCEEEEEECSSCSSCEE--------EEESSSEEEEECSS------SCCEEEEEECSSSCCCCEEECT
T ss_pred             cCceeEEEeCCCCCCeEE--------EEeCCCCEEEeeCC------CCccceeecCCCCceEEEEECC
Confidence            99999999999 676666        56667999999999      7888999999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-38  Score=275.56  Aligned_cols=288  Identities=17%  Similarity=0.212  Sum_probs=219.8

Q ss_pred             eeeeecCCCcEEEEEecCCCC-cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECC-CC
Q 016547           24 KHKTIIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCP-TE   99 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~-~~   99 (387)
                      .....+|.+.|++++|+| ++ ++|++|+.||.|+|||+.+.            .....+.  +|.. .|.+++|+| ++
T Consensus        66 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~h~~-~v~~~~~~~~~~  131 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQ------------NKTSFIQGMGPGD-AITGMKFNQFNT  131 (383)
T ss_dssp             EEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTST------------TCEEEECCCSTTC-BEEEEEEETTEE
T ss_pred             EEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCc------------ccceeeecCCcCC-ceeEEEeCCCCC
Confidence            345568999999999999 55 89999999999999999987            4455554  5777 799999999 78


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      ++|++++.|+.|++||+.+....                                      .......|...|.+++|+|
T Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~  173 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSGSVIQ--------------------------------------VFAKTDSWDYWYCCVDVSV  173 (383)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEE--------------------------------------EEECCCCSSCCEEEEEEET
T ss_pred             CEEEEEeCCCEEEEEECCCCceE--------------------------------------EEeccCCCCCCeEEEEECC
Confidence            99999999999999999742110                                      0111234558899999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ++ .+|++++.|+.|++||++ ++  ....+..|...|.+++|+| ++. +|++++.|+.|++||+++....  ...+..
T Consensus       174 ~~-~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~  246 (383)
T 3ei3_B          174 SR-QMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK--NSYIAE  246 (383)
T ss_dssp             TT-TEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST--TCEEEE
T ss_pred             CC-CEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEE
Confidence            98 789999999999999994 33  5677888999999999999 777 9999999999999999973321  234444


Q ss_pred             eccccceEEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          259 FEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      + +|...|.+++|+| ++.+ |++++.|+.|++||++...........        ......|...+. +.|+|++..++
T Consensus       247 ~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~p~~~~~~  315 (383)
T 3ei3_B          247 M-PHEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYDWSKPDQIIIH--------PHRQFQHLTPIK-ATWHPMYDLIV  315 (383)
T ss_dssp             E-ECSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTBTTSCSEEEEC--------CBCCCTTSCCCC-CEECSSSSEEE
T ss_pred             e-cCCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCCCccccccccc--------cccccccccceE-EeccCCCCceE
Confidence            5 6999999999999 9885 678999999999999875432111000        001122344444 46666666665


Q ss_pred             EEecCCC-CCCCCCceEEEEecCCCcccccchhhhhhhc--cCceEEEeeecC
Q 016547          338 VSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEK--FKAHVISCTSKP  387 (387)
Q Consensus       338 ~s~s~d~-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~v~~~~f~P  387 (387)
                      ++.+.|. .+|+.||.|++||+.      +++++.++.+  |...+..++|+|
T Consensus       316 ~~~s~dg~~s~s~d~~i~iwd~~------~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          316 AGRYPDDQLLLNDKRTIDIYDAN------SGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             EECBCCTTTCTTCCCCEEEEETT------TCCEEEEECBTTBCSCCCEEEECT
T ss_pred             EEecCCcccccCCCCeEEEEecC------CCceeeeecCCCCCceEEEEEEec
Confidence            5443221 156688999999999      7888888887  557788889987

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-39  Score=283.31  Aligned_cols=295  Identities=15%  Similarity=0.227  Sum_probs=230.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      |.+.|++++|+| ++++|++|+.||.|++|| .++            .....+.+|.. .|.+++|+|++++|++++.|+
T Consensus       107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~  171 (425)
T 1r5m_A          107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTG------------ALLNVLNFHRA-PIVSVKWNKDGTHIISMDVEN  171 (425)
T ss_dssp             -CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTS------------CEEEEECCCCS-CEEEEEECTTSSEEEEEETTC
T ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCC------------CeeeeccCCCc-cEEEEEECCCCCEEEEEecCC
Confidence            688999999999 889999999999999999 344            56777888887 799999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCC-------CC----CCcee-----ccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547          110 SVVLWSIQDHITSSATDPATAKSA-------GS----SGSII-----KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  173 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~-------~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  173 (387)
                      .|++||+.++..............       ..    ...+.     .......++.+.+++....+....+..|...|.
T Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~  251 (425)
T 1r5m_A          172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS  251 (425)
T ss_dssp             CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred             eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE
Confidence            999999987754433222111100       00    00000     011122355677778888888888899999999


Q ss_pred             EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCC
Q 016547          174 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  253 (387)
                      +++|+|++ .+|++++.|+.|++||+++++  ....+..|...|.+++|+| ++ ++++++.||.|++||+++      +
T Consensus       252 ~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~------~  320 (425)
T 1r5m_A          252 VLEFNDTN-KLLLSASDDGTLRIWHGGNGN--SQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQ------N  320 (425)
T ss_dssp             EEEEETTT-TEEEEEETTSCEEEECSSSBS--CSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTT------T
T ss_pred             EEEECCCC-CEEEEEcCCCEEEEEECCCCc--cceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCC------C
Confidence            99999998 789999999999999999877  4666778999999999999 77 999999999999999998      8


Q ss_pred             CceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC-----CCCCceeeeeeccCCC--CeeE
Q 016547          254 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----TNYPAGLFFQHAGHRD--KVVD  326 (387)
Q Consensus       254 ~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~v~~  326 (387)
                      +.+..+..|...|.+++|+|++++ |++++.||.|++||++............     ...+...+..+.+|..  .|++
T Consensus       321 ~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  399 (425)
T 1r5m_A          321 TLLALSIVDGVPIFAGRISQDGQK-YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD  399 (425)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSSE-EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred             cEeEecccCCccEEEEEEcCCCCE-EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence            889999999999999999999995 6789999999999998753111100000     0011125677888876  9999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++|+|++++|+        +++.||.|++|+++
T Consensus       400 ~~~s~~~~~l~--------~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          400 LSWNCAGNKIS--------VAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEECTTSSEEE--------EEESSSCCEEEECC
T ss_pred             EEccCCCceEE--------EEecCceEEEEeec
Confidence            99999999877        66667999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-39  Score=284.89  Aligned_cols=274  Identities=13%  Similarity=0.098  Sum_probs=204.7

Q ss_pred             eecCCCcEEEEEecCC-----CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           27 TIIHPGEVNRIRELPQ-----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~-----~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      +.+|.+.|++++|+|.     ++.+||+|+.||+|+|||+..++...... .....+...+.+|.. .|++++|+++ ..
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~~~~p~~~l~~h~~-~v~sv~~s~~-~~  279 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KMCEKPSLTLSLADS-LITTFDFLSP-TT  279 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-ECCCSCSEEECCTTT-CEEEEEESSS-SE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-eeecCceEEEEcCCC-CEEEEEecCC-Ce
Confidence            4567899999999994     25799999999999999998764221000 001135567889987 7999999986 48


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE--EEcc
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV--TFCP  179 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~  179 (387)
                      |++|+.||+|++||++++.                                       .+...+.+|...|.++  .|+|
T Consensus       280 lasgs~DgtV~lWD~~~~~---------------------------------------~~~~~~~~H~~~V~sv~~~~s~  320 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPE---------------------------------------VPSFYDQVHDSYILSVSTAYSD  320 (524)
T ss_dssp             EEEEETTSEEEEEETTBCS---------------------------------------SCSEEEECSSSCEEEEEEECCT
T ss_pred             EEEEeCCCEEEEEECCCCC---------------------------------------CceEEeecccccEEEEEEEcCC
Confidence            9999999999999997531                                       1224578899999999  5677


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCC--CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      ++.++|++++.|++|++||+++.+  ....+.+|..  .|.+++|+| ++..+++++.|+.|++||+++      +.++.
T Consensus       321 ~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~------~~~~~  391 (524)
T 2j04_B          321 FEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA------AFAVH  391 (524)
T ss_dssp             TSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC------TTCCE
T ss_pred             CCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc------cccce
Confidence            654789999999999999998876  3334445543  588999999 899999999999999999998      77888


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCcee-c------------cCCCCCC----------------
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV-E------------QGPRTTN----------------  308 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~-~------------~~~~~~~----------------  308 (387)
                      .+.+|...|++++|+|+++. |++|+.||.|++||+...-... .            .....+.                
T Consensus       392 ~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~  470 (524)
T 2j04_B          392 PLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLT  470 (524)
T ss_dssp             EEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--
T ss_pred             eeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccc
Confidence            88899999999999999996 5799999999999975421110 0            0000000                


Q ss_pred             CCceeeeeeccCCCCeeEEEEccCCC--eEEEEecCCCCCCCCCceEEEEecC
Q 016547          309 YPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....++..+.+|...|.+++|+|+++  .+++       +|+.||.|+||++.
T Consensus       471 ~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA-------sg~~~g~vrlw~l~  516 (524)
T 2j04_B          471 VNDVSKAKIDAHGINITCTKWNETSAGGKCYA-------FSNSAGLLTLEYLS  516 (524)
T ss_dssp             -----------CCCSCCCEEECCSTTTTTEEE-------EECTTSEEEEEECS
T ss_pred             cCCcceeeecCCCceEEEEECCCCCCccHHHH-------hhccCceEEEEEcc
Confidence            01334566788999999999999975  2344       66677999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.3e-39  Score=285.65  Aligned_cols=289  Identities=14%  Similarity=0.220  Sum_probs=202.7

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC------------CCceEEEEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------DNAEFALAM   95 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~~v~~~~~   95 (387)
                      ..|.+.|++++|+| ++++||+|+.||.|+|||+.+.+.... ......+....+.+|.            . .|++++|
T Consensus        25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~l~~  101 (447)
T 3dw8_B           25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRW  101 (447)
T ss_dssp             CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECC-CCCEEEE
T ss_pred             ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccC-ceEEEEE
Confidence            35789999999999 899999999999999999987732110 0011113567888997            5 6999999


Q ss_pred             CCCC--CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC------CCCCCcee-ec
Q 016547           96 CPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG------PSVGPRGI-YN  166 (387)
Q Consensus        96 ~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~  166 (387)
                      +|++  .+|++++.|++|++||+.+..........    ....+......   ......+...      ....+... ..
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL----KEEDGRYRDPT---TVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC----C--------CC---CCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecc----cCccccccCcc---cccceEeccccchheeeeccceEEecc
Confidence            9998  79999999999999999864332110000    00000000000   0000000000      00001112 36


Q ss_pred             CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeE-------EeeccCCCeeEEEecCCCC-CeEEEeeCCCe
Q 016547          167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------VEKAHDADLHCVDWNPLDD-NLILTGSADNS  238 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~  238 (387)
                      +|...|.+++|+|++ .+|++| .|+.|++||++.... ...       .+..|...|++++|+| ++ ++|++|+.||.
T Consensus       175 ~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          175 AHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGT  250 (447)
T ss_dssp             CCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSC
T ss_pred             CCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCe
Confidence            899999999999998 788888 799999999985431 222       2558999999999999 77 99999999999


Q ss_pred             EEEEEeccCCCCCCCCc----eEEeccccc------------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceecc
Q 016547          239 VRMFDRRNLTSNGVGSP----INKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  302 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~  302 (387)
                      |++||+++      +..    +..+..|..            .|.+++|+|++++ |++++. +.|++||++....    
T Consensus       251 i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~----  318 (447)
T 3dw8_B          251 IRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENR----  318 (447)
T ss_dssp             EEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSS----
T ss_pred             EEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCcc----
Confidence            99999998      554    678888776            8999999999996 568887 9999999986322    


Q ss_pred             CCCCCCCCceeeeeeccCCCC---------------eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          303 GPRTTNYPAGLFFQHAGHRDK---------------VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                                .+..+.+|...               +..++|+|++++++        +|+.||.|++||+..
T Consensus       319 ----------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~--------s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          319 ----------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM--------TGSYNNFFRMFDRNT  373 (447)
T ss_dssp             ----------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE--------EECSTTEEEEEETTT
T ss_pred             ----------ccceeeccccccccccccccccccccceEEEECCCCCEEE--------EeccCCEEEEEEcCC
Confidence                      23344555431               33499999999886        777789999999983

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.3e-38  Score=272.72  Aligned_cols=266  Identities=20%  Similarity=0.336  Sum_probs=211.8

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      ...|.+.|++++|+| ++++|++|+.||.|++||+.++            +....+.+|.. .|.+++|  ++++|++++
T Consensus       130 ~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~-~v~~~~~--~~~~l~~~~  193 (401)
T 4aez_A          130 ETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ------------TKLRTMAGHQA-RVGCLSW--NRHVLSSGS  193 (401)
T ss_dssp             ECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEE--ETTEEEEEE
T ss_pred             ecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC------------eEEEEecCCCC-ceEEEEE--CCCEEEEEc
Confidence            334899999999999 8899999999999999999988            67788889987 7999999  568999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .||.|++||++...                                       .....+.+|...|.+++|+|++ .+|+
T Consensus       194 ~dg~i~i~d~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~  233 (401)
T 4aez_A          194 RSGAIHHHDVRIAN---------------------------------------HQIGTLQGHSSEVCGLAWRSDG-LQLA  233 (401)
T ss_dssp             TTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred             CCCCEEEEecccCc---------------------------------------ceeeEEcCCCCCeeEEEEcCCC-CEEE
Confidence            99999999997421                                       2236677899999999999998 8899


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++.|+.|++||+++++  ....+..|...|.+++|+|....++++++  .|+.|++||+++      ++++..+. +..
T Consensus       234 s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~~-~~~  304 (401)
T 4aez_A          234 SGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARVNTVD-AGS  304 (401)
T ss_dssp             EEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------CCEEEEEE-CSS
T ss_pred             EEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------CCEEEEEe-CCC
Confidence            99999999999999876  56677789999999999994456666655  799999999998      78888886 677


Q ss_pred             eEEEEEEcCCCCeeEEE-ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          265 AVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      .|.+++|+|++++++++ |+.||.|++||+.....             .....+.+|...|.+++|+|++.+++      
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-------------~~~~~~~~h~~~v~~~~~s~dg~~l~------  365 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-------------TKQVDIPAHDTRVLYSALSPDGRILS------  365 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------------EEEEEEECCSSCCCEEEECTTSSEEE------
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------------eeEEEecCCCCCEEEEEECCCCCEEE------
Confidence            89999999999975533 55899999999987422             23445678999999999999999887      


Q ss_pred             CCCCCCCceEEEEecCCCcccccchhhhhhh-ccCceEEEee
Q 016547          344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCT  384 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  384 (387)
                        +++.||.|++|++.      +++.+.... .+..+..++.
T Consensus       366 --s~~~dg~i~iw~~~------~~~~~~~~~~~~~~~~~~i~  399 (401)
T 4aez_A          366 --TAASDENLKFWRVY------DGDHVKRPIPITKTPSSSIT  399 (401)
T ss_dssp             --EECTTSEEEEEECC------C-------------------
T ss_pred             --EEeCCCcEEEEECC------CCccccccccccCCCcccee
Confidence              77788999999999      566655443 3334444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-39  Score=282.44  Aligned_cols=281  Identities=11%  Similarity=0.167  Sum_probs=205.4

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .+|.+.|++++|+|.++++||+|+.||+|+|||+.+.+...      ..+....+ +|.. .|.+++|+|++++|++|+.
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-DCSS-TVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-ECSS-CEEEEEECTTSSEEEEEET
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-cCCC-CEEEEEEeCCCCEEEEEeC
Confidence            47899999999999677899999999999999998721100      01223333 4766 7999999999999999999


Q ss_pred             CCeEEEEEcC---CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cC--CCCCeEEEE--Ec
Q 016547          108 DKSVVLWSIQ---DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NG--HEDTVEDVT--FC  178 (387)
Q Consensus       108 d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~v~~~~--~~  178 (387)
                      ||.|++||++   ++........                                ..+..+  ..  +...+.++.  ++
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~~--------------------------------~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLNC--------------------------------ECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEEE--------------------------------EEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             CCEEEEEEeccccCCceeecccc--------------------------------ceeEEEEccCcccccCceEEEEEEc
Confidence            9999999995   2211110000                                000111  11  556777777  55


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      +++ .++++++.|+.|++||+++++  ....+..  |...|++++|+| ++.+|++|+.||.|++||+++      ++++
T Consensus       180 ~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~  249 (437)
T 3gre_A          180 EEK-SLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLI  249 (437)
T ss_dssp             SSC-EEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEE
T ss_pred             CCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEE
Confidence            777 899999999999999999887  5666666  889999999999 999999999999999999998      8888


Q ss_pred             EEec-cccceEEEEEEcC----CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee----------eeecc--
Q 016547          257 NKFE-GHSAAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF----------FQHAG--  319 (387)
Q Consensus       257 ~~~~-~~~~~i~~~~~~~----~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--  319 (387)
                      ..+. .|...|.+++|+|    ++. +|++++.||.|++||++............. ......          ..+.+  
T Consensus       250 ~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          250 RSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDE-QPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSS-CCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCC-CCccceecccccccccceecccc
Confidence            8886 7888999996665    455 578999999999999987543222111100 000000          01233  


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  375 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~  375 (387)
                      |...|++++|+ ++++++        +|+.||.|++||+.      +++.+..+.+
T Consensus       328 ~~~~v~~l~~~-~~~~l~--------s~~~d~~i~~wd~~------~~~~~~~~~~  368 (437)
T 3gre_A          328 SLNALSTISVS-NDKILL--------TDEATSSIVMFSLN------ELSSSKAVIS  368 (437)
T ss_dssp             SGGGGCCEEEE-TTEEEE--------EEGGGTEEEEEETT------CGGGCEEEEC
T ss_pred             cCCceEEEEEC-CceEEE--------ecCCCCeEEEEECC------CcccceEEec
Confidence            78889999999 565555        66666999999998      5555555544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-38  Score=277.51  Aligned_cols=279  Identities=18%  Similarity=0.351  Sum_probs=222.9

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~  109 (387)
                      ......++++|....++++++.||.|+||++......        ......+.+|.+ .|++++|+| ++++|++|+.||
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~-~V~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSS-CEEEEEECTTCTTEEEEEETTS
T ss_pred             ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCC-CEEEEEeCCCCCCEEEEEeCCC
Confidence            3445568888855556667899999999999654211        123445788987 799999999 999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|++||+.++....                                 ....++..+.+|...|.+++|+|++.++|++++
T Consensus       105 ~v~vw~~~~~~~~~---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A          105 TVMVWEIPDGGLVL---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             EEEEEECCTTCCSS---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             eEEEEEccCCCCcc---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            99999998653211                                 011345778899999999999999867899999


Q ss_pred             CCCeEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccce-
Q 016547          190 DDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAA-  265 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~-  265 (387)
                      .||.|++||+++++  ....+  ..|...|.+++|+| ++++|++++.||.|++||+++      ++.+..+ ..|... 
T Consensus       152 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          152 CDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTR  222 (402)
T ss_dssp             TTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT------TEEEEEEECSSCSSS
T ss_pred             CCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC------CceeeeeccCCCCCc
Confidence            99999999999877  55666  67999999999999 999999999999999999998      8888888 678776 


Q ss_pred             EEEEEEcCCCCeeEEEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          266 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      +.+++|+|++. ++++|   +.|+.|++||++......             ......|...+.+++|+|+++++++++  
T Consensus       223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~g--  286 (402)
T 2aq5_A          223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPL-------------SLQELDTSSGVLLPFFDPDTNIVYLCG--  286 (402)
T ss_dssp             CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCS-------------EEEECCCCSSCEEEEEETTTTEEEEEE--
T ss_pred             ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCc-------------eEEeccCCCceeEEEEcCCCCEEEEEE--
Confidence            89999999988 46687   789999999998754321             112235677899999999999988644  


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchh-hhhhhcc--CceEEEeeecC
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEV-LAELEKF--KAHVISCTSKP  387 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~--~~~v~~~~f~P  387 (387)
                           +.||.|++||+.      .+++ +..+..|  ..+|.+++|+|
T Consensus       287 -----~~dg~i~i~d~~------~~~~~~~~l~~~~~~~~v~~~~~sp  323 (402)
T 2aq5_A          287 -----KGDSSIRYFEIT------SEAPFLHYLSMFSSKESQRGMGYMP  323 (402)
T ss_dssp             -----TTCSCEEEEEEC------SSTTCEEEEEEECCSSCCSEEEECC
T ss_pred             -----cCCCeEEEEEec------CCCcceEeecccccCCcccceEEec
Confidence                 455999999999      4553 5555544  58999999987

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-38  Score=279.45  Aligned_cols=268  Identities=15%  Similarity=0.186  Sum_probs=211.0

Q ss_pred             cEEEE-EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           33 EVNRI-RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        33 ~v~~i-~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      .+.++ .|++ ++++|++|+.||.|++||+.++            .....+.+|.. .|++++|+|++++|++++.|+.|
T Consensus        98 ~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i  163 (420)
T 3vl1_A           98 DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVS-EITKLKFFPSGEALISSSQDMQL  163 (420)
T ss_dssp             CEEEEEEECS-SSCEEEEEETTSCEEEECTTSC------------EEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEE
T ss_pred             CceEEEEEec-CCCEEEEEECCCCEEEEeCCCc------------ceeeecccccC-ccEEEEECCCCCEEEEEeCCCeE
Confidence            44444 5556 8999999999999999999887            56666778887 79999999999999999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      ++||+.++.                                        ....+.+|...|.+++|+|++ .+|++++.|
T Consensus       164 ~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d  202 (420)
T 3vl1_A          164 KIWSVKDGS----------------------------------------NPRTLIGHRATVTDIAIIDRG-RNVLSASLD  202 (420)
T ss_dssp             EEEETTTCC----------------------------------------CCEEEECCSSCEEEEEEETTT-TEEEEEETT
T ss_pred             EEEeCCCCc----------------------------------------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCC
Confidence            999997542                                        236678899999999999998 789999999


Q ss_pred             CeEEEEEccCCCCceeEEeec---c---------------------CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          192 SCLILWDARVGTSPVIKVEKA---H---------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~---~---------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      +.|++||+++++  ....+..   +                     ...+.+++|+| ++++|++|+.||.|++||+++ 
T Consensus       203 ~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~-  278 (420)
T 3vl1_A          203 GTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFS-  278 (420)
T ss_dssp             SCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTT-
T ss_pred             CcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCC-
Confidence            999999999876  4444443   2                     34556666788 899999999999999999998 


Q ss_pred             CCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCee
Q 016547          248 TSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVV  325 (387)
Q Consensus       248 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~  325 (387)
                           ++.+..+. .|...|.+++|+|+++.+|++++.||.|++||++.....              +..+.+ |...|.
T Consensus       279 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--------------~~~~~~~~~~~v~  339 (420)
T 3vl1_A          279 -----KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--------------VGEFLINEGTPIN  339 (420)
T ss_dssp             -----CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--------------SEEEEESTTSCEE
T ss_pred             -----CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--------------hhhhhccCCCCce
Confidence                 66666664 578899999999999855779999999999999975332              233444 667888


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc---chhhhhhhccCceEEEeeecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ---DEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .+.| +++.+++        +++.||.|++|++........   ......+..|.+.|.+++|+|
T Consensus       340 ~~~~-~~~~~l~--------s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  395 (420)
T 3vl1_A          340 NVYF-AAGALFV--------SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS  395 (420)
T ss_dssp             EEEE-ETTEEEE--------EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred             EEEe-CCCCEEE--------EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence            8855 4566655        667779999999985321110   112234567888999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.7e-40  Score=282.85  Aligned_cols=258  Identities=11%  Similarity=0.136  Sum_probs=199.5

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .|.++|++++|+| ++++||+|+.||.|++||+.++.          .+....+.+|.. .|.+++|+|++++|++++.|
T Consensus         9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C            9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSS-CEEEEEECTTTCCEEEEETT
T ss_pred             cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCc-eEEEEEEeCCCCEEEEEeCC
Confidence            4778999999999 89999999999999999998761          023445678887 79999999999999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      ++|++||+.++.                                     .......+..|...|.+++|+|++ .+|+++
T Consensus        77 ~~v~vwd~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  118 (377)
T 3dwl_C           77 RNAYVYEKRPDG-------------------------------------TWKQTLVLLRLNRAATFVRWSPNE-DKFAVG  118 (377)
T ss_dssp             SSEEEC-------------------------------------------CCCCEEECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred             CeEEEEEcCCCC-------------------------------------ceeeeeEecccCCceEEEEECCCC-CEEEEE
Confidence            999999998643                                     112335667899999999999998 789999


Q ss_pred             cCCCeEEEEEccCCCC-ceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------------CCCC
Q 016547          189 GDDSCLILWDARVGTS-PVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------GVGS  254 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------------~~~~  254 (387)
                      +.|+.|++||++.++. .....+.. |...|++++|+| ++++|++++.||.|++||++.....            ..++
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhh
Confidence            9999999999988752 12445555 999999999999 9999999999999999999632110            0134


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      ++..+ .|...|.+++|+|++++ |++++.||.|++||++....+           ...+..+.+|...|.+++|+|++.
T Consensus       198 ~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~  264 (377)
T 3dwl_C          198 VCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQP-----------PRALITVKLSQLPLRSLLWANESA  264 (377)
T ss_dssp             EEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTSC-----------EEECCCEECSSSCEEEEEEEETTE
T ss_pred             hhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCCc-----------ceeeEeecCCCCceEEEEEcCCCC
Confidence            55566 89999999999999995 679999999999999985331           123566788999999999999987


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +++        +|+.|+.+ +|+..
T Consensus       265 ~l~--------~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          265 IVA--------AGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEE--------EESSSSEE-EECCC
T ss_pred             EEE--------EEcCCcEE-EEEeC
Confidence            665        44444655 67665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.1e-38  Score=293.04  Aligned_cols=265  Identities=17%  Similarity=0.280  Sum_probs=207.2

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.+|.+.|.+++|+| ++++|++|+.||+|+|||+.++            .....+.+|.. .|.+++|+|++++|+
T Consensus       423 ~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~  488 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG------------VSTRRFVGHTK-DVLSVAFSLDNRQIV  488 (694)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSSCEE
T ss_pred             cceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------cceeEEeCCCC-CEEEEEEeCCCCEEE
Confidence            446678999999999999 8999999999999999999988            67788999998 699999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC-
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-  182 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  182 (387)
                      +|+.|++|++||........                                     ......+|...|.+++|+|++. 
T Consensus       489 s~s~D~~i~iwd~~~~~~~~-------------------------------------~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          489 SASRDRTIKLWNTLGECKYT-------------------------------------ISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEETTSCEEEECTTSCEEEE-------------------------------------ECSSTTSCSSCEEEEEECSCSSS
T ss_pred             EEeCCCEEEEEECCCCccee-------------------------------------eccCCCCCCCcEEEEEEeCCCCc
Confidence            99999999999975321100                                     0011246888999999999862 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ..+++++.|+.|++||+++.+  ....+.+|...|++++|+| ++++|++|+.||.|++||+++      ++.+..+. +
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~------~~~~~~~~-~  601 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE------GKKLYSLE-A  601 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT------TEEEECCB-C
T ss_pred             ceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CceEEEec-C
Confidence            479999999999999999877  6777889999999999999 999999999999999999998      77777776 4


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc----eeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA----GLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      ...|.+++|+|++.. ++++ .++.|++||++.................    ........+...+++++|+|++++|+ 
T Consensus       602 ~~~v~~~~~sp~~~~-l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~-  678 (694)
T 3dm0_A          602 NSVIHALCFSPNRYW-LCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF-  678 (694)
T ss_dssp             SSCEEEEEECSSSSE-EEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE-
T ss_pred             CCcEEEEEEcCCCcE-EEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE-
Confidence            567999999999874 5454 4677999999875332211100000000    00000111223578999999999887 


Q ss_pred             EecCCCCCCCCCceEEEEecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~  359 (387)
                             +|+.||+|+||++.
T Consensus       679 -------sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          679 -------SGYTDGVIRVWGIG  692 (694)
T ss_dssp             -------EEETTSEEEEEEC-
T ss_pred             -------EEcCCCeEEEEecc
Confidence                   77788999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-37  Score=271.11  Aligned_cols=252  Identities=19%  Similarity=0.387  Sum_probs=212.9

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      +.....+|.+.|++++|+| ++++||+|+.||+|+|||++++            +.+..+.+|.. .+.++.+  ++.+|
T Consensus       139 ~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~-~v~~~s~--~~~~l  202 (420)
T 4gga_A          139 QLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGSLSW--NSYIL  202 (420)
T ss_dssp             EEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEE--ETTEE
T ss_pred             EEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCC-ceEEEee--CCCEE
Confidence            3344557889999999999 8999999999999999999998            77888999987 6777777  57899


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.|+.+++||.....                                       ..+..+.+|...+..+.|+|++ 
T Consensus       203 ~sgs~d~~i~~~d~~~~~---------------------------------------~~~~~~~~h~~~~~~~~~~~~g-  242 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG-  242 (420)
T ss_dssp             EEEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-
T ss_pred             EEEeCCCceeEeeecccc---------------------------------------eeeEEecccccceeeeeecCCC-
Confidence            999999999999987432                                       2235678899999999999999 


Q ss_pred             eeEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEe--eCCCeEEEEEeccCCCCCCCCceEE
Q 016547          183 QEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTG--SADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      .++++++.|+.+++||...++.  ........|...|.+++|+|.+..+++++  +.|+.|++||+++      +.++..
T Consensus       243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t------~~~~~~  316 (420)
T 4gga_A          243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSA  316 (420)
T ss_dssp             SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT------TEEEEE
T ss_pred             CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc------ccccee
Confidence            8899999999999999987653  23456678899999999999666777664  5799999999998      888888


Q ss_pred             eccccceEEEEEEcCCCCeeEEE-ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      +..| ..+.++.|+|+++.++++ |+.|+.|+|||+.+.               ..+..+.+|.+.|++++|+|++.+|+
T Consensus       317 ~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------------~~v~~l~gH~~~V~~l~~spdg~~l~  380 (420)
T 4gga_A          317 VDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA  380 (420)
T ss_dssp             EECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             eccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            8754 568899999999986644 347999999999875               45777899999999999999999887


Q ss_pred             EEecCCCCCCCCCceEEEEecCC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                              ||+.|++|+|||+.+
T Consensus       381 --------S~s~D~tvriWdv~~  395 (420)
T 4gga_A          381 --------SAAADETLRLWRCFE  395 (420)
T ss_dssp             --------EEETTTEEEEECCSC
T ss_pred             --------EEecCCeEEEEECCC
Confidence                    777789999999983

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.7e-38  Score=271.04  Aligned_cols=268  Identities=12%  Similarity=0.177  Sum_probs=216.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK  107 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~  107 (387)
                      +|.+.|++++|+| ++++|++|+.||.|++||+.+....         .....+.+|.. .|.+++|+|+++ +|++++.
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~   77 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSS-CEEEEEEEESSSEEEEEEET
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccceeeeecCC-ceEEEEECCCCCcEEEEEcC
Confidence            7999999999999 8899999999999999999887210         12455667876 799999999999 9999999


Q ss_pred             CCeEEEEEc-CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC--CCCCeEEEEEccCCCee
Q 016547          108 DKSVVLWSI-QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       108 d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~  184 (387)
                      ||.|++||+ .++.                                         ...+.+  |...|.+++|+| + .+
T Consensus        78 dg~i~~wd~~~~~~-----------------------------------------~~~~~~~~~~~~v~~l~~~~-~-~~  114 (342)
T 1yfq_A           78 QGEILKVDLIGSPS-----------------------------------------FQALTNNEANLGICRICKYG-D-DK  114 (342)
T ss_dssp             TSCEEEECSSSSSS-----------------------------------------EEECBSCCCCSCEEEEEEET-T-TE
T ss_pred             CCeEEEEEeccCCc-----------------------------------------eEeccccCCCCceEEEEeCC-C-CE
Confidence            999999999 6532                                         145566  999999999999 6 78


Q ss_pred             EEEecCCCeEEEEEccC---------CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc-CCCCCCCC
Q 016547          185 FCSVGDDSCLILWDARV---------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNGVGS  254 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~  254 (387)
                      +++++.|+.|++||+++         .+  ....+. |...|.+++|+| ++  +++++.|+.|++||++. ..    ..
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~----~~  184 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCED----DN  184 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTT----CC
T ss_pred             EEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccc----cc
Confidence            99999999999999987         54  233343 889999999998 55  99999999999999986 32    22


Q ss_pred             ceEEeccccceEEEEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCC---------CCe
Q 016547          255 PINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKV  324 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v  324 (387)
                      .......|...|.+++|+| +++. +++++.||.|++|+++......         .......+..|.         ..|
T Consensus       185 ~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i  254 (342)
T 1yfq_A          185 GTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGDDY---------NSSKRFAFRCHRLNLKDTNLAYPV  254 (342)
T ss_dssp             CEEEECSCSSCEEEEEECSGGGCE-EEEEETTSEEEEEECCTTCCST---------TCTTCEEEECCCCCTTCCSSCCCE
T ss_pred             ceeeecCCCCceeEEEECCCCCCE-EEEEecCCcEEEEEEcCCCccc---------ccccceeeecccccccccccceeE
Confidence            3344556888999999999 9985 6789999999999998741000         001233344554         499


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc-CceEEEee
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCT  384 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~  384 (387)
                      ++++|+|++++++        +|+.||.|++||+.      +++++.++.+| ..+|.+++
T Consensus       255 ~~~~~s~~~~~l~--------~~~~dg~i~vwd~~------~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          255 NSIEFSPRHKFLY--------TAGSDGIISCWNLQ------TRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             EEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSSEEEEEE
T ss_pred             EEEEEcCCCCEEE--------EecCCceEEEEcCc------cHhHhhhhhcccCCCceEec
Confidence            9999999999887        66677999999999      78888999998 99999886

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.3e-38  Score=272.05  Aligned_cols=258  Identities=12%  Similarity=0.167  Sum_probs=210.4

Q ss_pred             eeeeecCCCcEEEEEecCCC----C---cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC----CCceEE
Q 016547           24 KHKTIIHPGEVNRIRELPQN----T---KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFA   92 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~----~---~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~   92 (387)
                      .....+|.+.|++++|+| +    +   ++|++++.||.|++||+.+.+...       ......+..|.    ...|.+
T Consensus        55 ~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~  126 (397)
T 1sq9_A           55 SYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETK-------KVIFEKLDLLDSDMKKHSFWA  126 (397)
T ss_dssp             EEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC-------CEEEEEECCSCTTGGGSCEEE
T ss_pred             ceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccc-------cccceeecccccccCCCcEEE
Confidence            445568999999999999 6    8   999999999999999999882100       01167788884    237999


Q ss_pred             EEEC----CCCCE-EEEecCCCeEEEEEcCC------CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           93 LAMC----PTEPY-VLSGGKDKSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        93 ~~~~----~~~~~-l~s~~~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      ++|+    |++++ |++++.||.|++||+.+      .....                                   ..+
T Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~  171 (397)
T 1sq9_A          127 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-----------------------------------WSP  171 (397)
T ss_dssp             EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-----------------------------------CCC
T ss_pred             EEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-----------------------------------ccC
Confidence            9999    99999 99999999999999986      32211                                   011


Q ss_pred             ceee-------cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec---c---CCCeeEEEecCCCCC
Q 016547          162 RGIY-------NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H---DADLHCVDWNPLDDN  228 (387)
Q Consensus       162 ~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~  228 (387)
                      ...+       ..|...|.+++|+|++  ++++++.||.|++||+++.+  ....+..   |   ...|.+++|+| ++.
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~-~~~  246 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP-QGS  246 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS-STT
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECC-CCC
Confidence            1133       4588899999999998  89999999999999999876  5667777   8   99999999999 999


Q ss_pred             eEEEeeCC---CeEEEEEeccCCCCCCCCceEEecc-------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          229 LILTGSAD---NSVRMFDRRNLTSNGVGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       229 ~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                      +|++++.|   |.|++||+++      ++++..+..             |...|.+++|+|++++ |++++.||.|++||
T Consensus       247 ~l~~~~~d~~~g~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          247 LLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWD  319 (397)
T ss_dssp             EEEEEEEETTEEEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEE
T ss_pred             EEEEEecCCCCceEEEEECCC------CcccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEEEE
Confidence            99999999   9999999998      888999988             9999999999999996 67999999999999


Q ss_pred             CCCCCceeccCCCCCCCCceeeeeec------cC---------------CCCeeEEEEccCC----------CeEEEEec
Q 016547          293 YEKVGKKVEQGPRTTNYPAGLFFQHA------GH---------------RDKVVDFHWNASD----------PWTVVSVS  341 (387)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~~s~s  341 (387)
                      ++..               ..+..+.      +|               ...|++++|+|++          ++++    
T Consensus       320 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~----  380 (397)
T 1sq9_A          320 VKTK---------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC----  380 (397)
T ss_dssp             TTTT---------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE----
T ss_pred             cCCC---------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE----
Confidence            9875               2344444      55               8999999999998          4555    


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                          +|+.||.|++|++.
T Consensus       381 ----s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          381 ----CVCLDRSIRWFREA  394 (397)
T ss_dssp             ----EEETTTEEEEEEEE
T ss_pred             ----EecCCCcEEEEEcC
Confidence                66667999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-38  Score=274.31  Aligned_cols=267  Identities=15%  Similarity=0.262  Sum_probs=218.0

Q ss_pred             cCCCc--EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           29 IHPGE--VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        29 ~h~~~--v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      +|.+.  +.+++|++   ..+++++.||.|++||+.++            +....+.......|.+++|+|++++|++|+
T Consensus        89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  153 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSG------------SVSALAETDESTYVASVKWSHDGSFLSVGL  153 (401)
T ss_dssp             TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTC------------CEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCC------------cEeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence            45554  34466654   34777889999999999988            555556653334799999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .||.|++||+.++.                                        .+..+.+|...|.+++|.  + ..++
T Consensus       154 ~dg~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~--~-~~l~  190 (401)
T 4aez_A          154 GNGLVDIYDVESQT----------------------------------------KLRTMAGHQARVGCLSWN--R-HVLS  190 (401)
T ss_dssp             TTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEEE--T-TEEE
T ss_pred             CCCeEEEEECcCCe----------------------------------------EEEEecCCCCceEEEEEC--C-CEEE
Confidence            99999999997532                                        336677899999999994  3 5899


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                      +++.||.|++||++.... ....+..|...|.+++|+| ++.+|++|+.||.|++||+++      ..++..+..|...|
T Consensus       191 ~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~v  262 (401)
T 4aez_A          191 SGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKTNHNAAV  262 (401)
T ss_dssp             EEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEECCCSSCC
T ss_pred             EEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEecCCcceE
Confidence            999999999999985442 5667788999999999999 999999999999999999998      88899999999999


Q ss_pred             EEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCC
Q 016547          267 LCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  344 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~  344 (387)
                      .+++|+|++..++++++  .|+.|++||++...               .+..+ .+...|.+++|+|++++++++     
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~---------------~~~~~-~~~~~v~~~~~s~~~~~l~~~-----  321 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA---------------RVNTV-DAGSQVTSLIWSPHSKEIMST-----  321 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---------------EEEEE-ECSSCEEEEEECSSSSEEEEE-----
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---------------EEEEE-eCCCcEEEEEECCCCCeEEEE-----
Confidence            99999999888888865  79999999998752               23333 366789999999999988853     


Q ss_pred             CCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          345 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       345 ~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                       +|+.||.|++|++...    .......+.+|...|.+++|+|
T Consensus       322 -~g~~dg~i~v~~~~~~----~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          322 -HGFPDNNLSIWSYSSS----GLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             -ECTTTCEEEEEEEETT----EEEEEEEEECCSSCCCEEEECT
T ss_pred             -eecCCCcEEEEecCCc----cceeEEEecCCCCCEEEEEECC
Confidence             2556799999999831    1233345678999999999987

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-37  Score=257.50  Aligned_cols=244  Identities=21%  Similarity=0.331  Sum_probs=191.6

Q ss_pred             EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (387)
                      ..+.+|.+ .|++++|+|+|++|++|+.|++|++||+...                                      ..
T Consensus         3 ~~~~~h~~-~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------------------~~   43 (297)
T 2pm7_B            3 VIANAHNE-MIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------------------TH   43 (297)
T ss_dssp             EECCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------------------CB
T ss_pred             eeccCCcC-ceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------------------Cc
Confidence            45678887 7999999999999999999999999998642                                      11


Q ss_pred             CCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeC
Q 016547          160 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA  235 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~  235 (387)
                      +.+..+.+|.+.|.+++|+++  + .+|++|+.|++|++||+++++......+..|...|.+++|+| +  +.+|++++.
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~  121 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLVASS  121 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred             EEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEEEEC
Confidence            234678899999999999864  5 789999999999999998875434566778999999999999 6  789999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC------------CeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK------------SSVFGSSAEDGLLNIWDYEKVGKKVEQG  303 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~ll~s~~~d~~i~vwd~~~~~~~~~~~  303 (387)
                      ||.|++||++...    ......+.+|...|.+++|+|++            ..+|++|+.|+.|++||++......   
T Consensus       122 d~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~---  194 (297)
T 2pm7_B          122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---  194 (297)
T ss_dssp             TSEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE---
T ss_pred             CCcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---
Confidence            9999999998731    12245678899999999999973            1257899999999999998743211   


Q ss_pred             CCCCCCCceeeeeeccCCCCeeEEEEccCC--CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEE
Q 016547          304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  381 (387)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~  381 (387)
                              .+...+.+|...|.+++|+|++  ..+++       +|+.|++|+|||++......... +.....|...|.
T Consensus       195 --------~~~~~l~~H~~~V~~v~~sp~~~~~~~la-------s~s~D~~v~iWd~~~~~~~~~~~-~~~~~~~~~~v~  258 (297)
T 2pm7_B          195 --------VLESTLEGHSDWVRDVAWSPTVLLRSYMA-------SVSQDRTCIIWTQDNEQGPWKKT-LLKEEKFPDVLW  258 (297)
T ss_dssp             --------EEEEEECCCSSCEEEEEECCCCSSSEEEE-------EEETTSCEEEEEESSTTSCCEEE-ESSSSCCSSCEE
T ss_pred             --------EEEEEecCCCCceEEEEECCCCCCceEEE-------EEECCCcEEEEEeCCCCCcccee-eeecccCCCcEE
Confidence                    2456678999999999999986  34555       55556999999998421000001 111256889999


Q ss_pred             EeeecC
Q 016547          382 SCTSKP  387 (387)
Q Consensus       382 ~~~f~P  387 (387)
                      +++|+|
T Consensus       259 ~~~~s~  264 (297)
T 2pm7_B          259 RASWSL  264 (297)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999997

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-38  Score=272.74  Aligned_cols=254  Identities=18%  Similarity=0.270  Sum_probs=206.9

Q ss_pred             cCCCcEEEEEecCCC---CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEE
Q 016547           29 IHPGEVNRIRELPQN---TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS  104 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~---~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s  104 (387)
                      .|.+.|++++|+|..   +++|++|+.||.|++||+.++            +.+..+.+|.. .|.+++|+| ++++|++
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGN-AINELKFHPRDPNLLLS  133 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCS-CEEEEEECSSCTTEEEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCC-cEEEEEECCCCCCEEEE
Confidence            378999999999932   679999999999999999988            67788889987 799999999 8999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee---cCCCCCeEEEEEccCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---NGHEDTVEDVTFCPSS  181 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~  181 (387)
                      ++.||.|++||++++...                                        ..+   ..|...|.+++|+|++
T Consensus       134 ~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A          134 VSKDHALRLWNIQTDTLV----------------------------------------AIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             EETTSCEEEEETTTTEEE----------------------------------------EEECSTTSCSSCEEEEEECTTS
T ss_pred             EeCCCeEEEEEeecCeEE----------------------------------------EEecccccccCceeEEEECCCC
Confidence            999999999999764322                                        333   5789999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCc--------------------------eeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSP--------------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                       .+|++++.||.|++||+++++..                          .......|...|.+++|+   ++++++++.
T Consensus       174 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~  249 (366)
T 3k26_A          174 -EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSC  249 (366)
T ss_dssp             -SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECS
T ss_pred             -CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEec
Confidence             78999999999999999875410                          112223489999999997   569999999


Q ss_pred             CCeEEEEEeccCCC--------CCCCCceEEeccccceEEEEEEcCC--CCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547          236 DNSVRMFDRRNLTS--------NGVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       236 dg~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  305 (387)
                      ||.|++||+++...        ......+..+..|...|.+++|+|+  +++ |++++.||.|++||+.......     
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~-----  323 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM-LALGNQVGKLYVWDLEVEDPHK-----  323 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE-EEEECTTSCEEEEECCSSSGGG-----
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE-EEEEecCCcEEEEECCCCCCcc-----
Confidence            99999999987321        0001347778889999999999999  885 6799999999999998753221     


Q ss_pred             CCCCCceeeeeeccC--CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          306 TTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       306 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                            .....+.+|  ...|++++|+|++++|+        +|+.||.|++||+.
T Consensus       324 ------~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iwd~~  365 (366)
T 3k26_A          324 ------AKCTTLTHHKCGAAIRQTSFSRDSSILI--------AVCDDASIWRWDRL  365 (366)
T ss_dssp             ------CEEEEECCTTCCSCEEEEEECTTSSEEE--------EEETTSEEEEEEC-
T ss_pred             ------ccceEEcccccCCceEEEEeCCCCCeEE--------EEeCCCEEEEEEec
Confidence                  134456666  78999999999999877        67777999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.2e-38  Score=309.76  Aligned_cols=326  Identities=19%  Similarity=0.299  Sum_probs=255.9

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .....+|.+.|++++|+| ++++||+|+.||+|++||+.++            +....+.+|.+ .|.+++|+|++++|+
T Consensus       608 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~  673 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG------------EKLLDIKAHED-EVLCCAFSSDDSYIA  673 (1249)
T ss_dssp             SEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred             eEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEeccCCC-CEEEEEEecCCCEEE
Confidence            445668999999999999 8999999999999999999998            77888999988 799999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCccc----CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAK----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      +++.||+|++||+.++............    ................++.+.+|+.........+.+|...|.+++|+|
T Consensus       674 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred             EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence            9999999999999987554433221110    001111111122234567788899988888999999999999999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCce-----------------------------------------------------
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPV-----------------------------------------------------  206 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------------------------------------------  206 (387)
                      ++ .++++++.||.|++||+++++...                                                     
T Consensus       754 ~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~  832 (1249)
T 3sfz_A          754 DD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL  832 (1249)
T ss_dssp             ST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred             CC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence            98 789999999999999987653100                                                     


Q ss_pred             eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                      .....+|...|.+++|+| ++.++++++.||.|++||+.+      +..+..+.+|...|.+++|+|+++. +++++.||
T Consensus       833 ~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~dg  904 (1249)
T 3sfz_A          833 AEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS------RLKVADCRGHLSWVHGVMFSPDGSS-FLTASDDQ  904 (1249)
T ss_dssp             EEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred             eEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC------CceeeecCCCccceEEEEECCCCCE-EEEEeCCC
Confidence            011126788899999999 999999999999999999998      8899999999999999999999996 56999999


Q ss_pred             eEEEEeCCCCCceec-------------------------------------------------cCCCC-----------
Q 016547          287 LLNIWDYEKVGKKVE-------------------------------------------------QGPRT-----------  306 (387)
Q Consensus       287 ~i~vwd~~~~~~~~~-------------------------------------------------~~~~~-----------  306 (387)
                      .|++||+........                                                 ..+..           
T Consensus       905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~  984 (1249)
T 3sfz_A          905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA  984 (1249)
T ss_dssp             CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence            999999763110000                                                 00000           


Q ss_pred             ----CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEE
Q 016547          307 ----TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  382 (387)
Q Consensus       307 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  382 (387)
                          ..........+.+|...|++++|+|++++++        +++.||.|++||+.      +++.+ .+.+|...|.+
T Consensus       985 i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------s~~~dg~i~vwd~~------~~~~~-~~~~~~~~v~~ 1049 (1249)
T 3sfz_A          985 IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--------SSSEDSVIQVWNWQ------TGDYV-FLQAHQETVKD 1049 (1249)
T ss_dssp             CEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--------EECSSSBEEEEETT------TTEEE-CCBCCSSCEEE
T ss_pred             EEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--------EEcCCCEEEEEECC------CCceE-EEecCCCcEEE
Confidence                0011233455678999999999999999888        77788999999999      55554 45689999999


Q ss_pred             eeecC
Q 016547          383 CTSKP  387 (387)
Q Consensus       383 ~~f~P  387 (387)
                      ++|+|
T Consensus      1050 ~~~~~ 1054 (1249)
T 3sfz_A         1050 FRLLQ 1054 (1249)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.8e-37  Score=259.79  Aligned_cols=244  Identities=18%  Similarity=0.339  Sum_probs=207.5

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      ..+|.+.|.+++|+| ++++|++++.||.|++||+.+.+          ......+..|.. .|.+++|+|++++|++++
T Consensus        93 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~  160 (337)
T 1gxr_A           93 CLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAP-ACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             CSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSS-CEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCC-ceEEEEECCCCCEEEEEe
Confidence            347999999999999 88999999999999999998872          124566777876 689999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .||.|++||++++.                                        ....+..|...|.+++|+|++ .+++
T Consensus       161 ~dg~v~~~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~l~  199 (337)
T 1gxr_A          161 SDGNIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISNDG-TKLW  199 (337)
T ss_dssp             TTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SEEE
T ss_pred             CCCcEEEEeCCCCc----------------------------------------eeeeeecccCceEEEEECCCC-CEEE
Confidence            99999999997532                                        235667789999999999998 7899


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                      +++.||.|++||+++++  ..... .+...+.+++|+| +++++++++.||.|++||++.      .+ ...+..|...|
T Consensus       200 ~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~v  268 (337)
T 1gxr_A          200 TGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------PD-KYQLHLHESCV  268 (337)
T ss_dssp             EEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------SC-EEEECCCSSCE
T ss_pred             EEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC------CC-eEEEcCCccce
Confidence            99999999999999876  33333 5788999999999 999999999999999999986      43 45677899999


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .+++|+|++++ +++++.||.|++||+.....               . ....|...|.+++|+|++++++        +
T Consensus       269 ~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~---------------~-~~~~~~~~v~~~~~s~~~~~l~--------~  323 (337)
T 1gxr_A          269 LSLKFAYCGKW-FVSTGKDNLLNAWRTPYGAS---------------I-FQSKESSSVLSCDISVDDKYIV--------T  323 (337)
T ss_dssp             EEEEECTTSSE-EEEEETTSEEEEEETTTCCE---------------E-EEEECSSCEEEEEECTTSCEEE--------E
T ss_pred             eEEEECCCCCE-EEEecCCCcEEEEECCCCeE---------------E-EEecCCCcEEEEEECCCCCEEE--------E
Confidence            99999999995 57899999999999987522               2 2245788999999999999877        6


Q ss_pred             CCCCceEEEEecC
Q 016547          347 TGGGGTLQIWRMS  359 (387)
Q Consensus       347 g~~dg~i~iw~~~  359 (387)
                      ++.||.|++|++.
T Consensus       324 ~~~dg~i~iw~~~  336 (337)
T 1gxr_A          324 GSGDKKATVYEVI  336 (337)
T ss_dssp             EETTSCEEEEEEE
T ss_pred             ecCCCeEEEEEEe
Confidence            6677999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.1e-37  Score=273.47  Aligned_cols=285  Identities=19%  Similarity=0.315  Sum_probs=226.9

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC--CCCCEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPYV  102 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~--~~~~~l  102 (387)
                      ....+|.+.|++++|+| ++ +|++|+.||+|++||++++            +....+.+|.. .|.+++|+  ++++++
T Consensus       156 ~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~l~~~~~~~~~~l  220 (464)
T 3v7d_B          156 LQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG------------CCTHVFEGHNS-TVRCLDIVEYKNIKYI  220 (464)
T ss_dssp             EEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEEESSSCEEE
T ss_pred             EEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC------------cEEEEECCCCC-ccEEEEEecCCCCCEE
Confidence            34557999999999998 55 8999999999999999988            67788899987 79999998  578999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.||.|++||+.+............      .....           ............+.+|...|.++.  +++ 
T Consensus       221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~--~~~-  280 (464)
T 3v7d_B          221 VTGSRDNTLHVWKLPKESSVPDHGEEHD------YPLVF-----------HTPEENPYFVGVLRGHMASVRTVS--GHG-  280 (464)
T ss_dssp             EEEETTSCEEEEECCCCCCC------CC------SSEEE-----------SCGGGCTTEEEEECCCSSCEEEEE--EET-
T ss_pred             EEEcCCCcEEEeeCCCCcccccccccCC------cceEe-----------eccCCCeEEEEEccCccceEEEEc--CCC-
Confidence            9999999999999987643322111000      00000           000011223456788999998874  556 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .++++++.||.|++||+++++  ....+.+|...|.+++|+| +++++++|+.||.|++||+++      ++++..+.+|
T Consensus       281 ~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h  351 (464)
T 3v7d_B          281 NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGH  351 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCC
Confidence            789999999999999999877  6777888999999999999 999999999999999999998      8999999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...|.+++|++  . .+++++.||.|++||++.....               .. ..|...+..++|+|++.+++     
T Consensus       352 ~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~---------------~~-~~~~~~~~~~~~~~~~~~l~-----  407 (464)
T 3v7d_B          352 TALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRK---------------FS-YHHTNLSAITTFYVSDNILV-----  407 (464)
T ss_dssp             SSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEE---------------EE-EECTTCCCEEEEEECSSEEE-----
T ss_pred             CCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCcee---------------ee-ecCCCCccEEEEEeCCCEEE-----
Confidence            99999999984  4 4679999999999999875321               11 23666788899999998766     


Q ss_pred             CCCCCCCCceEEEEecCCCcccccchhhhh-hhccCceEEEeeecC
Q 016547          343 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAE-LEKFKAHVISCTSKP  387 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~v~~~~f~P  387 (387)
                         +|+ ||.|++||+.      +++++.. +..|.+.|++++|++
T Consensus       408 ---~~~-dg~i~iwd~~------~g~~~~~~~~~~~~~v~~v~~~~  443 (464)
T 3v7d_B          408 ---SGS-ENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG  443 (464)
T ss_dssp             ---EEE-TTEEEEEETT------TCCEEESCTTTTCSEEEEEEEET
T ss_pred             ---Eec-CCeEEEEECC------CCcEEehhhccCCCcEEEEEecC
Confidence               444 5999999999      7888875 678999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.9e-37  Score=266.43  Aligned_cols=271  Identities=17%  Similarity=0.250  Sum_probs=210.2

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-----EeccCCCceEEEEECC-CC
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-----LTGHQDNAEFALAMCP-TE   99 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~~v~~~~~~~-~~   99 (387)
                      ...+|.+.|++++|+|.++++|++|+.||.|++||+.+.........    .....     ..+|.. .|.+++|+| ++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  112 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC----KAVCSIGRDHPDVHRY-SVETVQWYPHDT  112 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE----CEEEEECTTCTTCCSS-CEEEEEECTTCT
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec----cccccccccccccCCC-cEEEEEEccCCC
Confidence            34469999999999997788999999999999999998743221100    00000     124776 799999999 78


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      .+|++++.||.|++||+.++...                                        ..+ .+...+.++.|+|
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~----------------------------------------~~~-~~~~~~~~~~~~~  151 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTA----------------------------------------DVF-NFEETVYSHHMSP  151 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECS
T ss_pred             cEEEEEeCCCeEEEeeCCCCccc----------------------------------------eec-cCCCceeeeEeec
Confidence            89999999999999999864321                                        222 3567899999998


Q ss_pred             CCC--eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          180 SSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       180 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      .+.  .++++++.|+.|++||+++++  ....+..|...|++++|+| ++. +|++++.||.|++||++...     .++
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~-----~~~  223 (408)
T 4a11_B          152 VSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRAS-----GCL  223 (408)
T ss_dssp             SCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSS-----CCS
T ss_pred             CCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCC-----ccc
Confidence            642  489999999999999999887  5667778999999999999 776 69999999999999998732     233


Q ss_pred             EEe---------------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC--------------
Q 016547          257 NKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT--------------  307 (387)
Q Consensus       257 ~~~---------------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------------  307 (387)
                      ..+               ..|...|.+++|+|++++ |++++.||.|++||+..............              
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
T 4a11_B          224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG  302 (408)
T ss_dssp             EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred             ccccccccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence            333               568899999999999996 56899999999999988544322111000              


Q ss_pred             ------------------CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          308 ------------------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       308 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                                        ......+..+.+|...|++++|+|++++|+        +|+.||.|++|++.
T Consensus       303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iw~~~  364 (408)
T 4a11_B          303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY--------SGSRDCNILAWVPS  364 (408)
T ss_dssp             SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE--------EEETTSCEEEEEEC
T ss_pred             CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE--------EECCCCeEEEEeCC
Confidence                              012245667788999999999999999877        67777999999999

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.7e-39  Score=281.35  Aligned_cols=263  Identities=11%  Similarity=0.119  Sum_probs=211.0

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ..+++++|+| ++++|++|+.||.|++||+.+.+            ....+..|.  .+....|++++++|++++.||.|
T Consensus        57 ~~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~------------~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i  121 (420)
T 3vl1_A           57 DAGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRD------------GSKMLKRAD--YTAVDTAKLQMRRFILGTTEGDI  121 (420)
T ss_dssp             BCCTTCEEEE-EETTEEEEEETTEEEEEECCSEE------------TTTTSCSCC--EEEEEEECSSSCEEEEEETTSCE
T ss_pred             ccccceeeee-cCCeEEEEEcCCcEEEEEecccc------------eeeEEecCC--ceEEEEEecCCCEEEEEECCCCE
Confidence            3345899999 88899999999999999998873            223334442  45666889999999999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      ++||+.++.                                        ....+.+|...|.+++|+|++ .+|++++.|
T Consensus       122 ~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d  160 (420)
T 3vl1_A          122 KVLDSNFNL----------------------------------------QREIDQAHVSEITKLKFFPSG-EALISSSQD  160 (420)
T ss_dssp             EEECTTSCE----------------------------------------EEEETTSSSSCEEEEEECTTS-SEEEEEETT
T ss_pred             EEEeCCCcc----------------------------------------eeeecccccCccEEEEECCCC-CEEEEEeCC
Confidence            999987532                                        224557899999999999998 789999999


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---ccceEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLC  268 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~~~~i~~  268 (387)
                      +.|++||+++++  ....+.+|...|.+++|+| ++++|++++.||.|++||+++      ++.+..+..   |...+.+
T Consensus       161 ~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          161 MQLKIWSVKDGS--NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             SEEEEEETTTCC--CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEE
T ss_pred             CeEEEEeCCCCc--CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccE
Confidence            999999999887  4667788999999999999 999999999999999999998      777777764   3344555


Q ss_pred             EE---------------------EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          269 VQ---------------------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       269 ~~---------------------~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                      ++                     |+|++++ +++++.||.|++||++.....              ......|...|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~v~~~  296 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFSKEQT--------------IQLPSKFTCSCNSL  296 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEEEETTTCCEE--------------EEECCTTSSCEEEE
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEEEECCCCcee--------------EEcccccCCCceeE
Confidence            44                     5788875 679999999999999875322              22335688899999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc-hhhhhhhc-cCceEEEeeecC
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD-EVLAELEK-FKAHVISCTSKP  387 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~-~~~~~~~~-~~~~v~~~~f~P  387 (387)
                      +|+|+++.+++       +|+.||.|++||+.      ++ .++..+.+ |...|.++.|++
T Consensus       297 ~~~~~~~~~l~-------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~~~v~~~~~~~  345 (420)
T 3vl1_A          297 TVDGNNANYIY-------AGYENGMLAQWDLR------SPECPVGEFLINEGTPINNVYFAA  345 (420)
T ss_dssp             EECSSCTTEEE-------EEETTSEEEEEETT------CTTSCSEEEEESTTSCEEEEEEET
T ss_pred             EEeCCCCCEEE-------EEeCCCeEEEEEcC------CCcCchhhhhccCCCCceEEEeCC
Confidence            99999994444       55666999999999      44 34677776 677888887653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=267.27  Aligned_cols=279  Identities=15%  Similarity=0.235  Sum_probs=216.2

Q ss_pred             CcceeeeeeecCCCcEEEEEecCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547           19 SPFVKKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC   96 (387)
Q Consensus        19 ~~~~~~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~   96 (387)
                      .|........+|.+.|++++|+|..  +++|++|+.||.|++||+++..          ......+.+|.. .|.+++|+
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~~   95 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTG-PVLDVCWS   95 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSS-CEEEEEEC
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccC-CEEEEEEC
Confidence            4444455566899999999999944  7999999999999999998731          023367888887 79999999


Q ss_pred             CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      |++++|++++.||.|++||+.++..                                         ..+..|...|.+++
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~v~~~~  134 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQA-----------------------------------------IQIAQHDAPVKTIH  134 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEE-----------------------------------------EEEEECSSCEEEEE
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCc-----------------------------------------eeeccccCceEEEE
Confidence            9999999999999999999986432                                         33456899999999


Q ss_pred             E--ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          177 F--CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       177 ~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      |  +|++ .+|++++.||.|++||+++++  ....+..+ ..+.++.+.+   ..+++++.++.+++||++..     ..
T Consensus       135 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~-----~~  202 (368)
T 3mmy_A          135 WIKAPNY-SCVMTGSWDKTLKFWDTRSSN--PMMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQ-----PS  202 (368)
T ss_dssp             EEECSSC-EEEEEEETTSEEEEECSSCSS--CSEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSS-----CE
T ss_pred             EEeCCCC-CEEEEccCCCcEEEEECCCCc--EEEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccc-----cc
Confidence            9  8887 889999999999999999887  44555544 3566666654   58889999999999999873     11


Q ss_pred             ceEEe-ccccceEEEEEEcCCCCe---eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--------
Q 016547          255 PINKF-EGHSAAVLCVQWSPDKSS---VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--------  322 (387)
Q Consensus       255 ~~~~~-~~~~~~i~~~~~~~~~~~---ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  322 (387)
                      ....+ ..+...+.++++.++...   .+++++.||.|++||++.....            .....+.+|..        
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  270 (368)
T 3mmy_A          203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA------------KDNFTFKCHRSNGTNTSAP  270 (368)
T ss_dssp             EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH------------HHSEEEECSEEC----CCC
T ss_pred             hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc------------ccceeeeeeeccccccccc
Confidence            22222 123344555655554432   2679999999999999875321            12334445544        


Q ss_pred             ----CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          323 ----KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       323 ----~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          .|++++|+|++++++        +|+.||.|++||+.      +++++.++.+|..+|.+++|+|
T Consensus       271 ~~~~~v~~~~~sp~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          271 QDIYAVNGIAFHPVHGTLA--------TVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             EEECCEEEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred             ccccceEEEEEecCCCEEE--------EEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence                799999999998887        67777999999999      7889999999999999999997

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-38  Score=292.76  Aligned_cols=263  Identities=19%  Similarity=0.288  Sum_probs=216.2

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC--CCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~--~~~l~  103 (387)
                      ...+|.+.|++++|+| ++++|++|+.||.|+|||+...          .......+.+|.+ .|++++|+|+  +++|+
T Consensus         4 ~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            4 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             ----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCTTSCSEEE
T ss_pred             ecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcC-ceEEEEecCCCCCCEEE
Confidence            3458999999999999 8889999999999999999843          1156678889987 7999999988  99999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC--C
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S  181 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  181 (387)
                      +|+.||.|++||+.++..                                      .....+..|...|.+++|+|+  +
T Consensus        72 s~s~Dg~I~vwd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~  113 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG  113 (753)
T ss_dssp             EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EEeCCCeEEEEECCCCcc--------------------------------------cccccccCCCCCeEEEEECCCCCC
Confidence            999999999999975421                                      123566789999999999999  6


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC------------CCCeEEEeeCCCeEEEEEeccCCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS  249 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~l~~~~~dg~i~~~d~~~~~~  249 (387)
                       ..+++|+.||.|++||++............|...|.+++|+|.            ++.++++|+.||.|++||++....
T Consensus       114 -~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~  192 (753)
T 3jro_A          114 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  192 (753)
T ss_dssp             -SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred             -CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence             8899999999999999998854455667789999999999994            389999999999999999997311


Q ss_pred             CCCCCceEEeccccceEEEEEEcCC---CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          250 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                      .  ......+.+|...|.+++|+|+   +. ++++++.||.|++||++.......          ........|...|++
T Consensus       193 ~--~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~  259 (753)
T 3jro_A          193 T--YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK----------KTLLKEEKFPDVLWR  259 (753)
T ss_dssp             E--EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCB----------CCBSSSSCCSSCCCC
T ss_pred             c--ceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcce----------eEEeccCCCCCceEE
Confidence            0  1556778899999999999999   66 578999999999999987532211          123334568889999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ++|+|++++++        +|+.||.|++|++..
T Consensus       260 l~~spdg~~l~--------s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          260 ASWSLSGNVLA--------LSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEECTTTCCEE--------EECSSSCEECCBCCS
T ss_pred             EEEcCCCCEEE--------EEcCCCEEEEEecCC
Confidence            99999999887        777789999999983

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.5e-37  Score=263.56  Aligned_cols=180  Identities=9%  Similarity=0.129  Sum_probs=139.0

Q ss_pred             CCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE
Q 016547          151 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI  230 (387)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (387)
                      +.+|+..+.+.+..+. |...|.+++|+|++ +++++++.+ .+.+|+..+++.........|...|.+++|+| ++.++
T Consensus       159 i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l  234 (365)
T 4h5i_A          159 MRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVL  234 (365)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEE
T ss_pred             EEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEE
Confidence            3333333444445554 67789999999999 788888754 56777777666333344567888999999999 99999


Q ss_pred             EEeeCCC----eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547          231 LTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  306 (387)
Q Consensus       231 ~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~  306 (387)
                      ++++.|+    .+++||+......  ......+.+|...|++++|+|+|++ ||+|+.|+.|+|||+++.          
T Consensus       235 ~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~----------  301 (365)
T 4h5i_A          235 IAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKDL----------  301 (365)
T ss_dssp             EEEEESSSCCEEEEEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTTT----------
T ss_pred             EEEecCCcceeEEeecccccceec--ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCCC----------
Confidence            9999887    6888988762100  1124566788999999999999995 689999999999999875          


Q ss_pred             CCCCceeeee-eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          307 TNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       307 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                           +++.. +.+|...|++++|+||+++|+        ||+.|++|+||++..
T Consensus       302 -----~~~~~~~~gH~~~V~~v~fSpdg~~la--------S~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 -----SMSKIFKQAHSFAITEVTISPDSTYVA--------SVSAANTIHIIKLPL  343 (365)
T ss_dssp             -----EEEEEETTSSSSCEEEEEECTTSCEEE--------EEETTSEEEEEECCT
T ss_pred             -----cEEEEecCcccCCEEEEEECCCCCEEE--------EEeCCCeEEEEEcCC
Confidence                 33444 478999999999999999877        777779999999963

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-36  Score=265.44  Aligned_cols=263  Identities=19%  Similarity=0.319  Sum_probs=218.1

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ++.|+|++ + ++||+|. |++|+|||+.++            +....+.  +|.. .|++++|+|+|++|++|+.||+|
T Consensus       108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg------------~~~~~~~~~~~~~-~V~sv~fspdg~~lasgs~Dg~v  171 (420)
T 4gga_A          108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEV  171 (420)
T ss_dssp             CBCEEECT-T-SEEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSCE
T ss_pred             ceeEEECC-C-CEEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-cEEEEEECCCCCEEEEEECCCeE
Confidence            45689987 4 5888875 899999999998            5555554  5555 69999999999999999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      ++||++++.                                        .+..+.+|...+.++.+.+   .++++|+.|
T Consensus       172 ~iWd~~~~~----------------------------------------~~~~~~~h~~~v~~~s~~~---~~l~sgs~d  208 (420)
T 4gga_A          172 QLWDVQQQK----------------------------------------RLRNMTSHSARVGSLSWNS---YILSSGSRS  208 (420)
T ss_dssp             EEEETTTTE----------------------------------------EEEEECCCSSCEEEEEEET---TEEEEEETT
T ss_pred             EEEEcCCCc----------------------------------------EEEEEeCCCCceEEEeeCC---CEEEEEeCC
Confidence            999997543                                        3466788999999988863   679999999


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  271 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (387)
                      +.+++||...... ....+.+|...+..+.++| ++.++++++.||.+++||.......  ...+.....|...|.+++|
T Consensus       209 ~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~  284 (420)
T 4gga_A          209 GHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAW  284 (420)
T ss_dssp             SEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEE
T ss_pred             CceeEeeecccce-eeEEecccccceeeeeecC-CCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeee
Confidence            9999999987653 4667789999999999999 9999999999999999999873211  2356677889999999999


Q ss_pred             cCCCCeeEEE--ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547          272 SPDKSSVFGS--SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  349 (387)
Q Consensus       272 ~~~~~~ll~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~  349 (387)
                      +|.+..++++  |+.|+.|++||+.+.               .+...+. +...+.++.|+|+++.++++      +|+.
T Consensus       285 ~p~~~~~la~~~gs~D~~I~iwd~~t~---------------~~~~~~~-~~~~v~~~~~~~~~~~lv~~------sg~~  342 (420)
T 4gga_A          285 CPWQSNVLATGGGTSDRHIRIWNVCSG---------------ACLSAVD-AHSQVCSILWSPHYKELISG------HGFA  342 (420)
T ss_dssp             CTTCTTEEEEEECTTTCEEEEEETTTT---------------EEEEEEE-CSSCEEEEEEETTTTEEEEE------ECTT
T ss_pred             CCCcccEEEEEeecCCCEEEEEeCCcc---------------ccceeec-cccceeeeeecCCCCeEEEE------EecC
Confidence            9988877765  458999999999885               2333333 44578999999999988764      3556


Q ss_pred             CceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          350 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       350 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ||.|+|||+.      +++++.++.+|.+.|++++|+|
T Consensus       343 d~~I~iwd~~------~~~~v~~l~gH~~~V~~l~~sp  374 (420)
T 4gga_A          343 QNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP  374 (420)
T ss_dssp             TCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             CCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            7999999999      7899999999999999999998

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=261.12  Aligned_cols=257  Identities=14%  Similarity=0.125  Sum_probs=214.5

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|.+++|+| ++++|++++.||.|++||+.++            +....+. |.. .|.+++|+|+++++++
T Consensus        68 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~-~~~-~v~~~~~~~~~~~l~~  132 (369)
T 3zwl_B           68 GTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG------------QCVATWK-SPV-PVKRVEFSPCGNYFLA  132 (369)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEE-CSS-CEEEEEECTTSSEEEE
T ss_pred             hhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEee-cCC-CeEEEEEccCCCEEEE
Confidence            34557999999999999 8899999999999999999988            5666666 554 6999999999999999


Q ss_pred             ecCC-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC--CeEEEEE
Q 016547          105 GGKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTF  177 (387)
Q Consensus       105 ~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~  177 (387)
                      ++.+     +.|++||+...........                             ........+..|..  .+.+++|
T Consensus       133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          133 ILDNVMKNPGSINIYEIERDSATHELTK-----------------------------VSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             EECCBTTBCCEEEEEEEEECTTTCCEEE-----------------------------ECSSCSEEEECCTTCCCEEEEEE
T ss_pred             ecCCccCCCCEEEEEEecCCccceeecc-----------------------------cccceeeeccCCcCccceeEEEE
Confidence            9998     9999999986533211110                             11223345556666  8999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      +|++ .++++++.||.|++||+++.. .....+..|...|.+++|+| ++.+|++++.||.|++||+++      ++.+.
T Consensus       184 ~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~------~~~~~  254 (369)
T 3zwl_B          184 STKG-KYIIAGHKDGKISKYDVSNNY-EYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST------LQVLK  254 (369)
T ss_dssp             CGGG-CEEEEEETTSEEEEEETTTTT-EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEE
T ss_pred             cCCC-CEEEEEcCCCEEEEEECCCCc-EeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC------Cceee
Confidence            9998 789999999999999998843 25677778999999999999 999999999999999999998      78888


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCC--------------eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                      .+. +...+.+++|+|+++++ ++++.++              .+++||+...               ..+..+.+|...
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------------~~~~~~~~~~~~  317 (369)
T 3zwl_B          255 KYE-TDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------------EEIGRVQGHFGP  317 (369)
T ss_dssp             EEE-CSSCEEEEEECSSSSEE-EEEECCC-------------CEEEEEETTTC---------------CEEEEEECCSSC
T ss_pred             eec-CCCCceeEEecCCCceE-EEeecCCCceEEEEecCCCcceeEEEecCCC---------------cchhheecccCc
Confidence            877 78889999999999975 5666676              8999999875               346667889999


Q ss_pred             eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      |++++|+|++++++        +|+.||.|++|++.
T Consensus       318 v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          318 LNTVAISPQGTSYA--------SGGEDGFIRLHHFE  345 (369)
T ss_dssp             EEEEEECTTSSEEE--------EEETTSEEEEEEEC
T ss_pred             EEEEEECCCCCEEE--------EEcCCCeEEEEECc
Confidence            99999999999877        67777999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-37  Score=273.32  Aligned_cols=297  Identities=17%  Similarity=0.289  Sum_probs=236.0

Q ss_pred             eeeecCCCcE-EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           25 HKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        25 ~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+.+|.+.| .|+.+   ++++|++|+.||+|++||+.++            +....+.+|.. .|.+++|+  +++++
T Consensus       112 ~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~  173 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMR--DNIII  173 (445)
T ss_dssp             EEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEE--TTEEE
T ss_pred             EEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCC------------cEEEEEcCCCC-CEEEEEec--CCEEE
Confidence            4566898875 66654   5789999999999999999988            67788899988 69999997  67999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.||+|++||+.++............................++.+.+|+....+.+..+.+|...|.+++|  ++ .
T Consensus       174 s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~  250 (445)
T 2ovr_B          174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-R  250 (445)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-S
T ss_pred             EEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-C
Confidence            99999999999998875443332211100000000001222335677888888888888899999999999999  45 6


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      .+++++.||.|++||+++++  ....+..|...|.+++|   ++.++++++.||.|++||+++      ++.+..+.+|.
T Consensus       251 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~  319 (445)
T 2ovr_B          251 RVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQ  319 (445)
T ss_dssp             CEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECCCC
T ss_pred             EEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEEEcCCc
Confidence            89999999999999999877  67778889999999998   578999999999999999998      88999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc---CCCCeeEEEEccCCCeEEEEe
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ..+.++.+++  . ++++++.||.|++||+++..               .+..+.+   |...|++++|++  ++++   
T Consensus       320 ~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~--~~l~---  376 (445)
T 2ovr_B          320 SLTSGMELKD--N-ILVSGNADSTVKIWDIKTGQ---------------CLQTLQGPNKHQSAVTCLQFNK--NFVI---  376 (445)
T ss_dssp             SCEEEEEEET--T-EEEEEETTSCEEEEETTTCC---------------EEEEECSTTSCSSCEEEEEECS--SEEE---
T ss_pred             ccEEEEEEeC--C-EEEEEeCCCeEEEEECCCCc---------------EEEEEccCCCCCCCEEEEEECC--CEEE---
Confidence            9999998854  4 46799999999999998752               2334443   888999999964  5555   


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhh-----hccCceEEEeeecC
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP  387 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~f~P  387 (387)
                           +|+.||.|++||+.      +++.+..+     .+|.+.|++++|+|
T Consensus       377 -----s~~~dg~v~iwd~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          377 -----TSSDDGTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             -----EEETTSEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             -----EEeCCCeEEEEECC------CCceeeeeeccccCCCCceEEEEEecC
Confidence                 56666999999999      67777776     57889999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-37  Score=269.40  Aligned_cols=212  Identities=11%  Similarity=0.129  Sum_probs=168.1

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.         ...+...+.+|.. .|.+++|+|++++|++
T Consensus        49 ~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~  117 (377)
T 3dwl_C           49 RTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDG---------TWKQTLVLLRLNR-AATFVRWSPNEDKFAV  117 (377)
T ss_dssp             CCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC---------------CCCCEEECCCCSS-CEEEEECCTTSSCCEE
T ss_pred             EEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCC---------ceeeeeEecccCC-ceEEEEECCCCCEEEE
Confidence            34457999999999999 78999999999999999999872         1135677788887 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCCCe
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  183 (387)
                      ++.|+.|++||+++...                                     ......+.. |...|.+++|+|++ .
T Consensus       118 ~~~d~~i~iwd~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~-~  159 (377)
T 3dwl_C          118 GSGARVISVCYFEQEND-------------------------------------WWVSKHLKRPLRSTILSLDWHPNN-V  159 (377)
T ss_dssp             EESSSCEEECCC------------------------------------------CCCCEEECSSCCSCEEEEEECTTS-S
T ss_pred             EecCCeEEEEEECCccc-------------------------------------ceeeeEeecccCCCeEEEEEcCCC-C
Confidence            99999999999975421                                     112345556 99999999999998 8


Q ss_pred             eEEEecCCCeEEEEEccCCC----------------CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          184 EFCSVGDDSCLILWDARVGT----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      +|++++.|+.|++||++...                ......+ .|...|++++|+| ++++|++++.||.|++||+++ 
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~-  236 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSA-  236 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECS-
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCC-
Confidence            89999999999999986322                1133344 8999999999999 999999999999999999998 


Q ss_pred             CCCCCCCc----eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          248 TSNGVGSP----INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       248 ~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                           ++.    +..+..|...|.+++|+|++++ |++++.++.+ +|+...
T Consensus       237 -----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          237 -----PEQPPRALITVKLSQLPLRSLLWANESAI-VAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             -----TTSCEEECCCEECSSSCEEEEEEEETTEE-EEEESSSSEE-EECCCC
T ss_pred             -----CCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEcCCcEE-EEEeCC
Confidence                 665    7888899999999999999985 6788766655 777653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-36  Score=268.77  Aligned_cols=265  Identities=20%  Similarity=0.323  Sum_probs=216.9

Q ss_pred             eeeeeecCCCcE-EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           23 KKHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        23 ~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      ....+.+|.+.| .++.+   ++++|++|+.||+|++||+.++            +....+.+|.+ .|.+++|++++ +
T Consensus       113 ~~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~------------~~~~~~~~h~~-~V~~l~~~~~~-~  175 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHGG-I  175 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECSTT-E
T ss_pred             ceEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCC------------cEEEEEeCCCc-CEEEEEEcCCC-E
Confidence            344667898875 67766   4569999999999999999988            77888999998 79999999988 9


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc--
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP--  179 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  179 (387)
                      |++|+.||+|++||++++.                                        .+..+.+|...|.+++|++  
T Consensus       176 l~s~s~dg~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGC----------------------------------------CTHVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             EEEEETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEEEESS
T ss_pred             EEEEeCCCCEEEEECCCCc----------------------------------------EEEEECCCCCccEEEEEecCC
Confidence            9999999999999997543                                        3366778999999999985  


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCc---------------------eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSP---------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  238 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  238 (387)
                      ++ .++++++.||.|++||+++....                     ......+|...+.++  ++ +++++++|+.||.
T Consensus       216 ~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l~~~~~d~~  291 (464)
T 3v7d_B          216 NI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNT  291 (464)
T ss_dssp             SC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEEEEEETTSC
T ss_pred             CC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEEEEEeCCCe
Confidence            55 88999999999999999876532                     144566788888877  45 7899999999999


Q ss_pred             EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          239 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      |++||+++      ++++..+.+|...|.+++|+|+++. +++++.||.|++||+++.               ..+..+.
T Consensus       292 i~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~~~~~  349 (464)
T 3v7d_B          292 LIVWDVAQ------MKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENG---------------ELMYTLQ  349 (464)
T ss_dssp             EEEEETTT------TEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTT---------------EEEEEEC
T ss_pred             EEEEECCC------CcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC---------------cEEEEEe
Confidence            99999998      8899999999999999999999996 579999999999999875               4567788


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +|...|.+++|++  .+++        +|+.||.|++||+..      ++..... .|...+..++|+|
T Consensus       350 ~h~~~v~~~~~~~--~~l~--------s~s~dg~v~vwd~~~------~~~~~~~-~~~~~~~~~~~~~  401 (464)
T 3v7d_B          350 GHTALVGLLRLSD--KFLV--------SAAADGSIRGWDAND------YSRKFSY-HHTNLSAITTFYV  401 (464)
T ss_dssp             CCSSCEEEEEECS--SEEE--------EEETTSEEEEEETTT------CCEEEEE-ECTTCCCEEEEEE
T ss_pred             CCCCcEEEEEEcC--CEEE--------EEeCCCcEEEEECCC------Cceeeee-cCCCCccEEEEEe
Confidence            9999999999984  5555        666679999999993      3333222 2455555556553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.7e-36  Score=261.66  Aligned_cols=270  Identities=14%  Similarity=0.191  Sum_probs=207.8

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .....+|.+.|.+++|+| ++++|++++.||.|++||+++++.          .....+..|.. .|.+++|+|++++|+
T Consensus        45 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~-~v~~~~~~~~~~~l~  112 (372)
T 1k8k_C           45 VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW----------KPTLVILRINR-AARCVRWAPNEKKFA  112 (372)
T ss_dssp             EEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE----------EEEEECCCCSS-CEEEEEECTTSSEEE
T ss_pred             eeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCee----------eeeEEeecCCC-ceeEEEECCCCCEEE
Confidence            344557999999999999 889999999999999999987721          12233456766 699999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|+.|++||++......                                    ........|...|.+++|+|++ .
T Consensus       113 ~~~~d~~v~i~d~~~~~~~~------------------------------------~~~~~~~~~~~~i~~~~~~~~~-~  155 (372)
T 1k8k_C          113 VGSGSRVISICYFEQENDWW------------------------------------VCKHIKKPIRSTVLSLDWHPNS-V  155 (372)
T ss_dssp             EEETTSSEEEEEEETTTTEE------------------------------------EEEEECTTCCSCEEEEEECTTS-S
T ss_pred             EEeCCCEEEEEEecCCCcce------------------------------------eeeeeecccCCCeeEEEEcCCC-C
Confidence            99999999999998542100                                    0112335688999999999998 7


Q ss_pred             eEEEecCCCeEEEEEccC----------------CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          184 EFCSVGDDSCLILWDARV----------------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ++++++.||.|++||++.                ........+..|...|.+++|+| ++++|++++.||.|++||+++ 
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-  233 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK-  233 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG-
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC-
Confidence            899999999999999752                11225667778999999999999 999999999999999999998 


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC--CCceeccCCCCC-----------------C
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTT-----------------N  308 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~--~~~~~~~~~~~~-----------------~  308 (387)
                           ++++..+..|...|.+++|+|++.+ ++++ .|+.|++|+++.  +.-.........                 .
T Consensus       234 -----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (372)
T 1k8k_C          234 -----KMAVATLASETLPLLAVTFITESSL-VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  306 (372)
T ss_dssp             -----TTEEEEEECSSCCEEEEEEEETTEE-EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             -----CceeEEEccCCCCeEEEEEecCCCE-EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence                 8899999999999999999999984 5566 799999999987  210000000000                 0


Q ss_pred             CCceee------eee-ccCCCCeeEEEEccCC----CeEEEEecCCCCCCCCCceEEEEecC
Q 016547          309 YPAGLF------FQH-AGHRDKVVDFHWNASD----PWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       309 ~~~~~~------~~~-~~~~~~v~~~~~~~~~----~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ......      ..+ .+|...|++++|.+..    .+++        ||+.||.|++|++.
T Consensus       307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~--------s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC--------TTGMDGGMSIWDVR  360 (372)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE--------EEETTSEEEEEEHH
T ss_pred             cccccccCccccccccccccCCcceeEEecCCCcceeeEE--------EecCCCceEEEEec
Confidence            000010      222 4899999999977544    5555        66677999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-37  Score=271.89  Aligned_cols=252  Identities=15%  Similarity=0.179  Sum_probs=192.9

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-CceEEEEECCCCCEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~~~~~~~l  102 (387)
                      .....+|.+.|++|+|+|.++++|++|+.||+|++||+++.            ........|.. ..+.+++|+|++++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN------------ILRVFASSDTINIWFCSLDVSASSRMV  224 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC------------EEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC------------ceeEEeccCCCCccEEEEEECCCCCEE
Confidence            34556899999999999978899999999999999999765            22222222221 246789999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++|+.||.|++||++..                                         .+..+.+|...|.+++|+|+++
T Consensus       225 ~~g~~dg~i~~wd~~~~-----------------------------------------~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          225 VTGDNVGNVILLNMDGK-----------------------------------------ELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             EEECSSSBEEEEESSSC-----------------------------------------BCCCSBCCSSCEEEEEECTTCS
T ss_pred             EEEeCCCcEeeeccCcc-----------------------------------------eeEEEecccceEEeeeecCCCc
Confidence            99999999999998632                                         2245678999999999999987


Q ss_pred             eeEEEecCCCeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          183 QEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      .++++++.|+.|++||+++.+.. ......+|...|++++|+| ++.+|++++.||.|++||+++      +.....+..
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~~~~~  336 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPLGLIP  336 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEEEECC
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------CccceEEec
Confidence            78999999999999999886632 2233457999999999999 999999999999999999998      666666654


Q ss_pred             ccc------eEEEEEEcCCCCe-----------eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee-eccCCCC
Q 016547          262 HSA------AVLCVQWSPDKSS-----------VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDK  323 (387)
Q Consensus       262 ~~~------~i~~~~~~~~~~~-----------ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  323 (387)
                      |..      .+....|+|++..           +++++..++.|++||..++.               .+.. ..+|...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------------~~~~l~~~~~~~  401 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------------MMCQLYDPESSG  401 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------------EEEEECCSSCCC
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------------EEEEEeCCCCCc
Confidence            432      1223445555443           33233345689999998752               2333 3468888


Q ss_pred             eeEE-EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          324 VVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       324 v~~~-~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      |.++ +|+|++.+|+        +|+ |++|+||++.
T Consensus       402 v~s~~~fspdg~~la--------sg~-d~~i~iW~~~  429 (435)
T 4e54_B          402 ISSLNEFNPMGDTLA--------SAM-GYHILIWSQQ  429 (435)
T ss_dssp             CCCEEEECTTSSCEE--------EEC-SSEEEECCCC
T ss_pred             EEEEEEECCCCCEEE--------EEc-CCcEEEEECC
Confidence            8887 6999998765        433 5799999999

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.6e-36  Score=261.54  Aligned_cols=246  Identities=15%  Similarity=0.177  Sum_probs=197.9

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--CceEEEEECCCCCEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVL  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~~~~~~~~~~l~  103 (387)
                      ...+|.+.|.+++|+|.++++|++++.||.|++||+.+.             ....+..|..  ..|.+++|+|++++|+
T Consensus       113 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~  179 (383)
T 3ei3_B          113 QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-------------VIQVFAKTDSWDYWYCCVDVSVSRQMLA  179 (383)
T ss_dssp             CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-------------EEEEEECCCCSSCCEEEEEEETTTTEEE
T ss_pred             ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-------------ceEEEeccCCCCCCeEEEEECCCCCEEE
Confidence            334799999999999977899999999999999999854             3344444431  3699999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|+.|++||+..                                         +.+..+..|...|.+++|+|++..
T Consensus       180 ~~~~d~~i~i~d~~~-----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          180 TGDSTGRLLLLGLDG-----------------------------------------HEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEETTSEEEEEETTS-----------------------------------------CEEEEEECSSSCEEEEEECSSCTT
T ss_pred             EECCCCCEEEEECCC-----------------------------------------CEEEEeccCCCcEEEEEECCCCCC
Confidence            999999999999842                                         133667789999999999999944


Q ss_pred             eEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          184 EFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                      ++++++.|+.|++||+++.+.  .....+ .|...|++++|+|.++.+|++++.||.|++||+++      +..+..+..
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~  291 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------WSKPDQIII  291 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------TTSCSEEEE
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------Ccccccccc
Confidence            899999999999999998431  234444 79999999999997789999999999999999998      555555554


Q ss_pred             cc-----------------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCC
Q 016547          262 HS-----------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRD  322 (387)
Q Consensus       262 ~~-----------------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  322 (387)
                      |.                 ..+..++|+|++++   +++.|+.|++||+.+.               ..+..+.+  |..
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~---------------~~~~~l~~~~~~~  353 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSG---------------GLVHQLRDPNAAG  353 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTC---------------CEEEEECBTTBCS
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCC---------------ceeeeecCCCCCc
Confidence            32                 34556777788773   7889999999999875               23445555  567


Q ss_pred             CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+..++|+|++.+|+        +|+ ||.|++||++
T Consensus       354 ~~~~~~~s~~g~~l~--------s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          354 IISLNKFSPTGDVLA--------SGM-GFNILIWNRE  381 (383)
T ss_dssp             CCCEEEECTTSSEEE--------EEE-TTEEEEEECC
T ss_pred             eEEEEEEecCccEEE--------Eec-CCcEEEEecC
Confidence            788889999999876        454 6999999997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.6e-37  Score=269.60  Aligned_cols=278  Identities=20%  Similarity=0.354  Sum_probs=219.0

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      +|...|.|+++   ++++|++|+.||.|++||+.++            +....+.+|.. .|.+++|  ++++|++|+.|
T Consensus       131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~l~~--~~~~l~sg~~d  192 (435)
T 1p22_A          131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITGSSD  192 (435)
T ss_dssp             SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEEETT
T ss_pred             CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCC-cEEEEEE--CCCEEEEEcCC
Confidence            56778999987   6789999999999999999988            67788999987 6899998  78999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccC--CCCCCceeccCCCCCCCCCCCCCCCCCCCc---eeecCCCCCeEEEEEccCCCe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPR---GIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      |+|++||+.++.............  ..-...  .......++.+.+|+.......   ..+.+|...|.+++|  ++ .
T Consensus       193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~  267 (435)
T 1p22_A          193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD-K  267 (435)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET-T
T ss_pred             CeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC-C
Confidence            999999999876543332211100  000011  1122234567777777666555   677899999999999  44 6


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      ++++++.||.|++||+++++  ....+..|...|.+++++   ++++++|+.||.|++||+++      ++++..+.+|.
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~  336 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC------GACLRVLEGHE  336 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECCCS
T ss_pred             EEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCC------CCEEEEEeCCc
Confidence            89999999999999999887  677888999999999984   57999999999999999998      89999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ..|.+++|  ++. ++++|+.||.|++||+.........      .....+..+.+|.+.|++++|  ++.+++      
T Consensus       337 ~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~--~~~~l~------  399 (435)
T 1p22_A          337 ELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQF--DEFQIV------  399 (435)
T ss_dssp             SCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEE--CSSCEE------
T ss_pred             CcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc------ccchheeeccCCCCCeEEEEe--CCCEEE------
Confidence            99999999  555 4679999999999999865322110      111256777899999999999  566666      


Q ss_pred             CCCCCCCceEEEEecC
Q 016547          344 CDSTGGGGTLQIWRMS  359 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~  359 (387)
                        +|+.||+|++||+.
T Consensus       400 --s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          400 --SSSHDDTILIWDFL  413 (435)
T ss_dssp             --ECCSSSEEEEEC--
T ss_pred             --EEeCCCEEEEEECC
Confidence              77888999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-36  Score=280.17  Aligned_cols=304  Identities=17%  Similarity=0.282  Sum_probs=238.8

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCc-eEEEEECC--CCCEEEEe
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA-EFALAMCP--TEPYVLSG  105 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-v~~~~~~~--~~~~l~s~  105 (387)
                      .|.+.|.+++|+| ++++|++++ ++.|++||++++..        ..+....+.+|.. . |++++|+|  ++++|+++
T Consensus        16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~--------~~~~~~~~~~h~~-~~v~~~~~sp~~~~~~l~s~   84 (615)
T 1pgu_A           16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDS--------KVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSG   84 (615)
T ss_dssp             CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCC--------SSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEE
T ss_pred             CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCC--------ccccceEEecCCC-ceEEEEEECcCCCCCEEEEe
Confidence            6899999999999 889999988 78999999986511        1146678899987 6 99999999  99999999


Q ss_pred             cCCCeEEEEEcCCC--------cCccccCC----CcccCCCCCCceeccCCCC--CCCCCCCCCCCCCCCceeecCCCCC
Q 016547          106 GKDKSVVLWSIQDH--------ITSSATDP----ATAKSAGSSGSIIKQSPKP--GDGNDKAADGPSVGPRGIYNGHEDT  171 (387)
Q Consensus       106 ~~d~~i~vwd~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  171 (387)
                      +.||.|++||+.++        ........    .........+..+......  ..+.+.+|+  ..+....+.+|...
T Consensus        85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~  162 (615)
T 1pgu_A           85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR  162 (615)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred             cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence            99999999999643        11111110    0001111112211111111  123455555  45677788899999


Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCC---CeeEEEecCCC-CCeEEEeeCCCeEEEEEeccC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA---DLHCVDWNPLD-DNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      |.+++|+|+++.++++++.|+.|++||+.+.+  ....+..|..   .|++++|+| + +++|++++.||.|++||+++ 
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-  238 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS-  238 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-
Confidence            99999999985589999999999999998876  6677788988   999999999 8 99999999999999999998 


Q ss_pred             CCCCCCCceEEe-c---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC---
Q 016547          248 TSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH---  320 (387)
Q Consensus       248 ~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  320 (387)
                           ++.+..+ .   .|...|.+++|+ ++++ |++++.|+.|++||++..               ..+..+..+   
T Consensus       239 -----~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~d~~i~~wd~~~~---------------~~~~~~~~~~~~  296 (615)
T 1pgu_A          239 -----GEFLKYIEDDQEPVQGGIFALSWL-DSQK-FATVGADATIRVWDVTTS---------------KCVQKWTLDKQQ  296 (615)
T ss_dssp             -----CCEEEECCBTTBCCCSCEEEEEES-SSSE-EEEEETTSEEEEEETTTT---------------EEEEEEECCTTC
T ss_pred             -----CCEeEEecccccccCCceEEEEEc-CCCE-EEEEcCCCcEEEEECCCC---------------cEEEEEcCCCCc
Confidence                 8888888 5   899999999999 8885 679999999999999874               223344444   


Q ss_pred             -CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          321 -RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       321 -~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                       ...+.++.|. ++.+++        +|+.||.|++||+.      .++++..+.+|.+.|.+++| |
T Consensus       297 ~~~~~~~~~~~-~~~~l~--------~~~~~g~i~~~d~~------~~~~~~~~~~~~~~v~~~~~-~  348 (615)
T 1pgu_A          297 LGNQQVGVVAT-GNGRII--------SLSLDGTLNFYELG------HDEVLKTISGHNKGITALTV-N  348 (615)
T ss_dssp             GGGCEEEEEEE-ETTEEE--------EEETTSCEEEEETT------EEEEEEEECCCSSCEEEEET-T
T ss_pred             ccCceeEEEeC-CCCeEE--------EEECCCCEEEEECC------CCcEEEEEeCCCCCEEEEEe-c
Confidence             4678888886 677776        66667999999999      78888899999999999998 6

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-38  Score=296.11  Aligned_cols=318  Identities=11%  Similarity=0.046  Sum_probs=216.0

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc------------------CCCc
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH------------------QDNA   89 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h------------------~~~~   89 (387)
                      .+|.+.|++++|+|.++.+|++|+.||.| +||+++.            ++...+..|                  .. .
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~-~  213 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN------------EIKQSFIYELPPFAPGGDFSEKTNEKRTP-K  213 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT------------EEEEEECCCBCTTCCCSTTCCCTTSCBCC-C
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC------------ceEEEEecccCCcCCCcccccccccccCC-C
Confidence            57999999999999667899999999999 9999988            444444444                  33 6


Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc--c-----C------------CCcc----cC-----C--------
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA--T-----D------------PATA----KS-----A--------  133 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~-----~------------~~~~----~~-----~--------  133 (387)
                      |++++|+|+|++|++|+.||+|++||++++.....  .     .            ....    ..     +        
T Consensus       214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s  293 (902)
T 2oaj_A          214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS  293 (902)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence            99999999999999999999999999987643221  0     0            0000    00     0        


Q ss_pred             C-CC-----CceeccC-------------------------------CC----------------------------CCC
Q 016547          134 G-SS-----GSIIKQS-------------------------------PK----------------------------PGD  148 (387)
Q Consensus       134 ~-~~-----~~~~~~~-------------------------------~~----------------------------~~~  148 (387)
                      + ..     ..+....                               ..                            ..+
T Consensus       294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d  373 (902)
T 2oaj_A          294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN  373 (902)
T ss_dssp             EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred             CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence            0 00     0000000                               00                            001


Q ss_pred             CCCCCCCCCCCCCc-----------------------------------------eeecCCCCCeEEEEEccCCCeeEEE
Q 016547          149 GNDKAADGPSVGPR-----------------------------------------GIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       149 ~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      +.+.+|+.......                                         ..+.+|...+..++|+|++ ++|++
T Consensus       374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laS  452 (902)
T 2oaj_A          374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFIT  452 (902)
T ss_dssp             SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEE
T ss_pred             CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEE
Confidence            22333332222111                                         0123344445555667887 89999


Q ss_pred             ecCCCeEEEEEccCCCCce--eEE--ee-----ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC-------
Q 016547          188 VGDDSCLILWDARVGTSPV--IKV--EK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-------  251 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~--~~~--~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------  251 (387)
                      |+.|++|++||+.++....  ...  +.     +|...|++++|+| ++++||+|+.||+|+|||+.+.....       
T Consensus       453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~  531 (902)
T 2oaj_A          453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES  531 (902)
T ss_dssp             EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred             ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence            9999999999998875211  111  11     7889999999999 99999999999999999998631000       


Q ss_pred             --------------------------------CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547          252 --------------------------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  299 (387)
Q Consensus       252 --------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  299 (387)
                                                      ..+++..+.+|.+.|++++|+|+| + ||+|+.|+.|+|||++.....
T Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~-lAsgs~D~tv~lwd~~~~~~~  609 (902)
T 2oaj_A          532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F-VGIAYAAGSLMLIDRRGPAII  609 (902)
T ss_dssp             ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E-EEEEETTSEEEEEETTTTEEE
T ss_pred             cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E-EEEEeCCCcEEEEECCCCeEE
Confidence                                            002467788999999999999999 4 789999999999998764211


Q ss_pred             eccCCCCCCCCceeeeeec-cCCCCeeEEEEc-----cCC---CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhh
Q 016547          300 VEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWN-----ASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL  370 (387)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~---~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~  370 (387)
                      ..          ..+..+. +|...|++++|+     |||   .+|+        +|+.|++|++||+..   ..+++.+
T Consensus       610 ~~----------~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~--------sgs~D~tv~~wd~~p---~~~g~~~  668 (902)
T 2oaj_A          610 YM----------ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV--------CGTDMGEVITYKILP---ASGGKFD  668 (902)
T ss_dssp             EE----------EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE--------EEETTSEEEEEEEEE---CGGGCEE
T ss_pred             EE----------eehhHhccccccceEEEEEEEEecCCCCCcceEEE--------EEecCCcEEEEEEec---CCCCcEE
Confidence            00          0012333 899999999999     886   4554        566669999999921   1167777


Q ss_pred             hhhhccC-----ceEEEee
Q 016547          371 AELEKFK-----AHVISCT  384 (387)
Q Consensus       371 ~~~~~~~-----~~v~~~~  384 (387)
                      .++.+|.     ++|.+++
T Consensus       669 ~~~~~~~~~~~~~~v~~i~  687 (902)
T 2oaj_A          669 VQLMDITNVTSKGPIHKID  687 (902)
T ss_dssp             EEEEEEEECCSSCCCCEEE
T ss_pred             EEecCceecCCCCceEEEE
Confidence            7777774     5666655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-37  Score=308.23  Aligned_cols=302  Identities=18%  Similarity=0.281  Sum_probs=246.8

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .+|.+.|.+++|+| +++++++++.||.|++||+.++            .....+.+|.. .|.+++|+|++++|++++.
T Consensus       837 ~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          837 TGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSR------------LKVADCRGHLS-WVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             CSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred             CCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------------ceeeecCCCcc-ceEEEEECCCCCEEEEEeC
Confidence            47999999999999 8899999999999999999988            67788899987 7999999999999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCC-----------------------------------------cccCCCCCCceeccCCCC
Q 016547          108 DKSVVLWSIQDHITSSATDPA-----------------------------------------TAKSAGSSGSIIKQSPKP  146 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~  146 (387)
                      ||.|++|++.+..........                                         ........+..  ...+.
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~--l~~g~  980 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY--VAFGD  980 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE--EEEEE
T ss_pred             CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE--EEEEc
Confidence            999999998643111100000                                         00000001111  11123


Q ss_pred             CCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC
Q 016547          147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD  226 (387)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (387)
                      .++.+.+++.........+.+|...|.+++|+|++ .++++++.||.|++||+.+++   ......|...+.+++|+| +
T Consensus       981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~v~~~~~~~-~ 1055 (1249)
T 3sfz_A          981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGD---YVFLQAHQETVKDFRLLQ-D 1055 (1249)
T ss_dssp             TTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTE---EECCBCCSSCEEEEEECS-S
T ss_pred             CCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc---eEEEecCCCcEEEEEEcC-C
Confidence            45677788888888888899999999999999998 889999999999999999876   334568999999999998 5


Q ss_pred             CCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547          227 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  306 (387)
Q Consensus       227 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~  306 (387)
                       ..+++++.||.|++||+.+      ++.+..+.+|...|.+++|+|+++. +++++.|+.|++||+....         
T Consensus      1056 -~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~s~d~~v~iwd~~~~~--------- 1118 (1249)
T 3sfz_A         1056 -SRLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLLS--------- 1118 (1249)
T ss_dssp             -SEEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSS-CEEECCSSCCCEECSSSSS---------
T ss_pred             -CcEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCcc---------
Confidence             4678899999999999998      8899999999999999999999996 5799999999999998752         


Q ss_pred             CCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh---------hccC
Q 016547          307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---------EKFK  377 (387)
Q Consensus       307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~---------~~~~  377 (387)
                            .+..+.+|...|++++|+|++++++        +|+.||.|++||+.      +++++..+         .+|.
T Consensus      1119 ------~~~~l~~h~~~v~~~~~s~dg~~la--------t~~~dg~i~vwd~~------~~~~~~~~~~~~~~~~~~~~~ 1178 (1249)
T 3sfz_A         1119 ------PLHELKGHNGCVRCSAFSLDGILLA--------TGDDNGEIRIWNVS------DGQLLHSCAPISVEEGTATHG 1178 (1249)
T ss_dssp             ------CSBCCCCCSSCEEEEEECSSSSEEE--------EEETTSCCCEEESS------SSCCCCCCCCCC-------CC
T ss_pred             ------eeeeeccCCCcEEEEEECCCCCEEE--------EEeCCCEEEEEECC------CCceEEEeccccccccccccC
Confidence                  3455678999999999999999877        67777999999999      56655544         6799


Q ss_pred             ceEEEeeecC
Q 016547          378 AHVISCTSKP  387 (387)
Q Consensus       378 ~~v~~~~f~P  387 (387)
                      +.|++++|+|
T Consensus      1179 ~~v~~l~fs~ 1188 (1249)
T 3sfz_A         1179 GWVTDVCFSP 1188 (1249)
T ss_dssp             SCCCEEEECT
T ss_pred             ceEEEEEECC
Confidence            9999999997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=249.05  Aligned_cols=263  Identities=20%  Similarity=0.334  Sum_probs=215.8

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      .++|+|++ ++ +||+|. |++|+|||++++            +.+..+.  +|.. .|++++|+|++++|++|+.||+|
T Consensus        28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg------------~~~~~~~~~~~~~-~V~~v~~~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECT-TS-EEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEECC-CC-EEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-eEEEEEECCCCCEEEEEECCCcE
Confidence            47899998 54 788764 899999999998            5555554  4555 69999999999999999999999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      ++||+++++                                        .+..+.+|...+.++.+.  + ..+++++.+
T Consensus        92 ~iw~~~~~~----------------------------------------~~~~~~~h~~~~~~~~~~--~-~~l~s~~~~  128 (318)
T 4ggc_A           92 QLWDVQQQK----------------------------------------RLRNMTSHSARVGSLSWN--S-YILSSGSRS  128 (318)
T ss_dssp             EEEETTTTE----------------------------------------EEEEEECCSSCEEEEEEE--T-TEEEEEETT
T ss_pred             EEeecCCce----------------------------------------eEEEecCccceEEEeecC--C-CEEEEEecC
Confidence            999998643                                        336677888888876664  3 579999999


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  271 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (387)
                      +.+++|+...... ....+.+|...+..+.+.+ ++++|++++.||.|++||+++....  .........+...|.++++
T Consensus       129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~  204 (318)
T 4ggc_A          129 GHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAW  204 (318)
T ss_dssp             SEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEE
T ss_pred             CceEeeecCCCce-eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEe
Confidence            9999999887663 4567788999999999999 9999999999999999999873211  2344566678889999999


Q ss_pred             cCCCCeeE--EEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCC
Q 016547          272 SPDKSSVF--GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  349 (387)
Q Consensus       272 ~~~~~~ll--~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~  349 (387)
                      +|++..++  ++++.++.|++||.+...                ......+...+..+.|+|+++.++++      +|+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~~~------sg~~  262 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSGA----------------CLSAVDAHSQVCSILWSPHYKELISG------HGFA  262 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTCC----------------EEEEEECSSCEEEEEEETTTTEEEEE------ECTT
T ss_pred             cCCCCcEEEEEecCCCCEEEEEeccccc----------------ccccccceeeeeeeeecccccceEEE------EEcC
Confidence            99887654  467789999999998742                22234567789999999999988754      4556


Q ss_pred             CceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          350 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       350 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      |+.|++||+.      +++++.++.+|.+.|++++|+|
T Consensus       263 d~~i~iwd~~------~~~~~~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          263 QNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             TCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             CCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            7999999999      7899999999999999999997

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.6e-37  Score=260.15  Aligned_cols=242  Identities=22%  Similarity=0.295  Sum_probs=185.7

Q ss_pred             EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (387)
                      ..+.+|.+ .|++++|+|+|++|++|+.|++|++||+.++..                                      
T Consensus         7 ~~~~~H~~-~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------   47 (316)
T 3bg1_A            7 TVDTSHED-MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------   47 (316)
T ss_dssp             -------C-CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------
T ss_pred             eecccccC-eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------
Confidence            34678887 799999999999999999999999999975321                                      


Q ss_pred             CCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeC
Q 016547          160 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA  235 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~  235 (387)
                      ..+..+.+|...|.+++|+++  + .+|++|+.|++|++||+++++......+.+|...|++++|+| +  +.+|++|+.
T Consensus        48 ~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~  125 (316)
T 3bg1_A           48 ILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILACGSS  125 (316)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEEECS
T ss_pred             EEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEEEcC
Confidence            123567899999999999863  5 789999999999999999875445667778999999999999 6  789999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC-----------------CeeEEEecCCCeEEEEeCCCCCc
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-----------------SSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      ||.|++||++....   ......+.+|...|.+++|+|+.                 + +|++|+.|+.|++||++....
T Consensus       126 D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~  201 (316)
T 3bg1_A          126 DGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQ  201 (316)
T ss_dssp             SSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSC
T ss_pred             CCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCc
Confidence            99999999986210   11234567899999999999973                 4 578999999999999975321


Q ss_pred             eeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC---CeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547          299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  375 (387)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~  375 (387)
                      .            .....+.+|...|.+++|+|++   ..+++       +|+.||+|++|++......  ......+..
T Consensus       202 ~------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~la-------s~s~D~~v~iw~~~~~~~~--~~~~~~~~~  260 (316)
T 3bg1_A          202 W------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIA-------SCSQDGRVFIWTCDDASSN--TWSPKLLHK  260 (316)
T ss_dssp             E------------EEEECCBCCSSCEEEEECCCCSSCSCCEEE-------EEETTCEEEEEECSSTTCC--CCBCCEEEE
T ss_pred             c------------ceeeecccCCCceEEEEecCCCCCCCceEE-------EEcCCCeEEEEEccCcccc--chhhhhhhc
Confidence            1            2355678999999999999986   23445       5556699999999842100  112234567


Q ss_pred             cCceEEEeeecC
Q 016547          376 FKAHVISCTSKP  387 (387)
Q Consensus       376 ~~~~v~~~~f~P  387 (387)
                      |.+.|++++|+|
T Consensus       261 ~~~~v~~v~~sp  272 (316)
T 3bg1_A          261 FNDVVWHVSWSI  272 (316)
T ss_dssp             CSSCEEEEEECT
T ss_pred             CCCcEEEEEEcC
Confidence            899999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.8e-37  Score=281.67  Aligned_cols=304  Identities=13%  Similarity=0.136  Sum_probs=224.7

Q ss_pred             eeeecCCC---cEEEEEecCCC-CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE-e---ccCCCceEEEEEC
Q 016547           25 HKTIIHPG---EVNRIRELPQN-TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-T---GHQDNAEFALAMC   96 (387)
Q Consensus        25 ~~~~~h~~---~v~~i~~~~~~-~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~v~~~~~~   96 (387)
                      ....+|.+   .|++++|+| + +++|++++.||.|++||+.++            +.+..+ .   .|.. .|.+++|+
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~-~v~~~~~~  262 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSG------------EFLKYIEDDQEPVQG-GIFALSWL  262 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTC------------CEEEECCBTTBCCCS-CEEEEEES
T ss_pred             eeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCC------------CEeEEecccccccCC-ceEEEEEc
Confidence            34456888   999999999 6 999999999999999999988            566667 5   7776 79999999


Q ss_pred             CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCC-------CCceeccCCCCCCCCCCCCCCCCCCCceee----
Q 016547           97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS-------SGSIIKQSPKPGDGNDKAADGPSVGPRGIY----  165 (387)
Q Consensus        97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  165 (387)
                       ++++|++++.|+.|++||+.++................       ....+.  ....++.+.+|+....+++..+    
T Consensus       263 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~i~~~d~~~~~~~~~~~~~~  339 (615)
T 1pgu_A          263 -DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII--SLSLDGTLNFYELGHDEVLKTISGHN  339 (615)
T ss_dssp             -SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE--EEETTSCEEEEETTEEEEEEEECCCS
T ss_pred             -CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE--EEECCCCEEEEECCCCcEEEEEeCCC
Confidence             99999999999999999998765433322210000000       000000  0111223333333333333333    


Q ss_pred             -----------------------------cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC-------------
Q 016547          166 -----------------------------NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-------------  203 (387)
Q Consensus       166 -----------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------  203 (387)
                                                   ..|...|.+++| +++ ..+++++.|+.|++||+...+             
T Consensus       340 ~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~  417 (615)
T 1pgu_A          340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANND  417 (615)
T ss_dssp             SCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSS
T ss_pred             CCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCC
Confidence                                         456666666777 334 578888888999888876421             


Q ss_pred             -------------------CceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCce-EEeccc
Q 016547          204 -------------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPI-NKFEGH  262 (387)
Q Consensus       204 -------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~-~~~~~~  262 (387)
                                         ......+ .+...+.+++|+   ++++++++. ||.|++||+..      +... ..+..|
T Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~------~~~~~~~~~~~  487 (615)
T 1pgu_A          418 GFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSD------LEVSFDLKTPL  487 (615)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTE------EEEEEECSSCC
T ss_pred             CCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc---CCEEEEeecCCCeEEEEECCC------ccccccccCCc
Confidence                               0122222 367788899887   789999999 99999999997      4444 667789


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEEEcc----------
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNA----------  331 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----------  331 (387)
                      ...|.+++|+|++++ |++++.||.|++||+...               ..+..+.+ |...|++++|+|          
T Consensus       488 ~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~  551 (615)
T 1pgu_A          488 RAKPSYISISPSETY-IAAGDVMGKILLYDLQSR---------------EVKTSRWAFRTSKINAISWKPAEKGANEEEI  551 (615)
T ss_dssp             SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTT---------------EEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred             cCceEEEEECCCCCE-EEEcCCCCeEEEeeCCCC---------------cceeEeecCCCCceeEEEEcCcccccccccc
Confidence            999999999999995 679999999999999875               33555666 999999999999          


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc-hhhhhhhccCceEEEeeecC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD-EVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++++++        +|+.||.|++||+.      .+ +++..+.+|.+.|++++|+|
T Consensus       552 ~~~~l~--------~~~~dg~i~iw~~~------~~~~~~~~~~~h~~~v~~l~~s~  594 (615)
T 1pgu_A          552 EEDLVA--------TGSLDTNIFIYSVK------RPMKIIKALNAHKDGVNNLLWET  594 (615)
T ss_dssp             SCCEEE--------EEETTSCEEEEESS------CTTCCEEETTSSTTCEEEEEEEE
T ss_pred             CCCEEE--------EEcCCCcEEEEECC------CCceechhhhcCccceEEEEEcC
Confidence            888777        66777999999999      45 78888999999999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=261.36  Aligned_cols=292  Identities=12%  Similarity=0.059  Sum_probs=210.5

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCC---CcccccCCCC--------------------------------
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP---NRHAVLGATN--------------------------------   75 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~---~~~~~~~~~~--------------------------------   75 (387)
                      ..++.+++|++ ++++|+++ .++.|++||+.+++   ..........                                
T Consensus         4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35789999999 77777665 57799999998886   2211110000                                


Q ss_pred             ----------CCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcC--CCcCccccCCCcccCCCCCCceecc
Q 016547           76 ----------SRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQ  142 (387)
Q Consensus        76 ----------~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~  142 (387)
                                ..+.....+|.+ .|.+++|+|++++| ++++.||.|++||+.  ++.                      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~----------------------  138 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYS-YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN----------------------  138 (450)
T ss_dssp             ------------------CCCC-CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS----------------------
T ss_pred             ccccccCccccCCCCCCCccCC-ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc----------------------
Confidence                      000111224444 69999999999996 899999999999997  432                      


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCCCee
Q 016547          143 SPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLH  218 (387)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~  218 (387)
                                        .+..+.  .|...|.+++|+|++ .+|++++.+|.|++|++.+.+..  ....+.+|...|+
T Consensus       139 ------------------~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~  199 (450)
T 2vdu_B          139 ------------------VLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT  199 (450)
T ss_dssp             ------------------CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE
T ss_pred             ------------------eeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceE
Confidence                              223333  567889999999998 88999999999999999887632  2235678999999


Q ss_pred             EEEecCCC---CCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC
Q 016547          219 CVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       219 ~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~  294 (387)
                      +++|+| +   +.+|++|+.|+.|++||+++      +..+.. +.+|...|.+++|+ ++++ |++++.|+.|++||++
T Consensus       200 ~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          200 DVHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCG-KDYL-LLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             EEEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCEEEECCCCSSCEEEEEEC-STTE-EEEEESSSEEEEEETT
T ss_pred             EEEEcC-CCCCCcEEEEEcCCCcEEEEECCC------CceeeeeecCCCCceEEEEEC-CCCE-EEEEeCCCeEEEEECC
Confidence            999999 8   89999999999999999998      777777 56899999999999 8885 6799999999999999


Q ss_pred             CCCceeccCCCCC--------CCCce--eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc
Q 016547          295 KVGKKVEQGPRTT--------NYPAG--LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  364 (387)
Q Consensus       295 ~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~  364 (387)
                      +............        ..++.  ...........|.+++|+|+++++++++.       .|+.|++|++.+.   
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-------~d~~i~iw~~~~~---  340 (450)
T 2vdu_B          271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-------ATKCIIILEMSEK---  340 (450)
T ss_dssp             TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-------TCSEEEEEEECSS---
T ss_pred             CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-------CCCeEEEEEeccC---
Confidence            8543211100000        00000  00000123457999999999998885432       4599999999210   


Q ss_pred             ccc---hhhhhhhccCceEEEeeecC
Q 016547          365 PQD---EVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       365 ~~~---~~~~~~~~~~~~v~~~~f~P  387 (387)
                       .+   +.+..+..| +.|.+++|+|
T Consensus       341 -~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          341 -QKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             -STTCEEEEEEEECS-SCEEEEEEET
T ss_pred             -CCCceeeccEeccC-CceEEEEecC
Confidence             33   566777777 8899999987

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-35  Score=259.17  Aligned_cols=257  Identities=17%  Similarity=0.298  Sum_probs=207.4

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC-CEEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~-~~l~s  104 (387)
                      ...+|.+.|++++|+|.++++|++|+.||+|++||+.++.....     ...+...+.+|.. .|.+++|+|++ ++|++
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s  149 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPVITLEGHTK-RVGIVAWHPTAQNVLLS  149 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCSEEEECCSS-CEEEEEECSSBTTEEEE
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCceEEecCCCC-eEEEEEECcCCCCEEEE
Confidence            34579999999999997788999999999999999988732211     1146778899987 79999999998 69999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cCCCCCeEEEEEccCCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~  182 (387)
                      ++.|+.|++||+.++..                                        ...+  ..|...|.+++|+|++ 
T Consensus       150 ~~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~-  188 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAA----------------------------------------VLTLGPDVHPDTIYSVDWSRDG-  188 (402)
T ss_dssp             EETTSCEEEEETTTTEE----------------------------------------EEEECTTTCCSCEEEEEECTTS-
T ss_pred             EcCCCEEEEEECCCCCc----------------------------------------cEEEecCCCCCceEEEEECCCC-
Confidence            99999999999986432                                        2455  6789999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEe-eccCCC-eeEEEecCCCCCeEEEe---eCCCeEEEEEeccCCCCCCCCc-e
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVE-KAHDAD-LHCVDWNPLDDNLILTG---SADNSVRMFDRRNLTSNGVGSP-I  256 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~~~~-~  256 (387)
                      .+|++++.||.|++||+++++  ....+ ..|... +.++.|+| ++.+|++|   +.|+.|++||+++      ... +
T Consensus       189 ~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~------~~~~~  259 (402)
T 2aq5_A          189 ALICTSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKH------LEEPL  259 (402)
T ss_dssp             SCEEEEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTB------CSSCS
T ss_pred             CEEEEEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCcc------ccCCc
Confidence            889999999999999999877  45555 577765 89999999 89999999   7999999999997      332 3


Q ss_pred             EEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          257 NKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       257 ~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      .... .|...+.+++|+|++++++++++.||.|++||+.......           ..+..+. |...|.+++|+|++.+
T Consensus       260 ~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~-----------~~l~~~~-~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          260 SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFL-----------HYLSMFS-SKESQRGMGYMPKRGL  327 (402)
T ss_dssp             EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCE-----------EEEEEEC-CSSCCSEEEECCGGGS
T ss_pred             eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcce-----------Eeecccc-cCCcccceEEeccccc
Confidence            3332 4677899999999999877788889999999998753211           1222222 6689999999999887


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ++        +  .|+.+++|++..
T Consensus       328 ~~--------s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          328 EV--------N--KCEIARFYKLHE  342 (402)
T ss_dssp             CG--------G--GTEEEEEEEEET
T ss_pred             ce--------e--cceeEEEEEcCC
Confidence            55        2  347999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-35  Score=245.45  Aligned_cols=243  Identities=19%  Similarity=0.270  Sum_probs=204.2

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ......|.+.|.+++|+| ++++|++|+.||.|++|++....         ..+....+.+|.. .|.++.|  ++++|+
T Consensus        52 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~---------~~~~~~~~~~~~~-~i~~~~~--~~~~l~  118 (313)
T 3odt_A           52 GTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATS---------GEDPLYTLIGHQG-NVCSLSF--QDGVVI  118 (313)
T ss_dssp             EEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCT---------TSCC-CEECCCSS-CEEEEEE--ETTEEE
T ss_pred             EEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecC---------CCCcccchhhccc-CEEEEEe--cCCEEE
Confidence            345567999999999999 88999999999999999998752         1245667888887 6899999  678999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.||.|++||..                                          .....+..|...+.++.|.|..+.
T Consensus       119 ~~~~d~~i~~~d~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~  156 (313)
T 3odt_A          119 SGSWDKTAKVWKEG------------------------------------------SLVYNLQAHNASVWDAKVVSFSEN  156 (313)
T ss_dssp             EEETTSEEEEEETT------------------------------------------EEEEEEECCSSCEEEEEEEETTTT
T ss_pred             EEeCCCCEEEEcCC------------------------------------------cEEEecccCCCceeEEEEccCCCC
Confidence            99999999999932                                          123566789999999999993338


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .+++++.||.|++||..  +  ....+.. |...+.+++|+| ++. +++++.||.|++||+++      ++++..+..|
T Consensus       157 ~l~~~~~d~~i~i~d~~--~--~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~  224 (313)
T 3odt_A          157 KFLTASADKTIKLWQND--K--VIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGH  224 (313)
T ss_dssp             EEEEEETTSCEEEEETT--E--EEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTT------CCEEEEEECC
T ss_pred             EEEEEECCCCEEEEecC--c--eEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCc------hhhhhhhhcC
Confidence            89999999999999933  2  3444555 889999999999 777 99999999999999998      8899999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...|.+++|+|++.  +++++.||.|++||++..               .....+..|...|.+++|+|++. ++     
T Consensus       225 ~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~-~~-----  281 (313)
T 3odt_A          225 ESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG---------------SLKQVITLPAISIWSVDCMSNGD-II-----  281 (313)
T ss_dssp             SSCEEEEEECTTSC--EEEEETTSEEEEECTTTC---------------CEEEEEECSSSCEEEEEECTTSC-EE-----
T ss_pred             CceEEEEEEecCCC--EEEEecCCEEEEEECCCC---------------ceeEEEeccCceEEEEEEccCCC-EE-----
Confidence            99999999999994  568999999999999885               34566778889999999999997 45     


Q ss_pred             CCCCCCCCceEEEEecC
Q 016547          343 DCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~  359 (387)
                         +++.||.|++|++.
T Consensus       282 ---~~~~dg~i~iw~~~  295 (313)
T 3odt_A          282 ---VGSSDNLVRIFSQE  295 (313)
T ss_dssp             ---EEETTSCEEEEESC
T ss_pred             ---EEeCCCcEEEEeCC
Confidence               44556999999999

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=243.77  Aligned_cols=252  Identities=18%  Similarity=0.356  Sum_probs=206.5

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      +..+..+|...|++++|+| ++++||+|+.||+|++||++++            +.+..+.+|.. .+.+  +++++..+
T Consensus        59 ~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~------------~~~~~~~~h~~-~~~~--~~~~~~~l  122 (318)
T 4ggc_A           59 QLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGS--LSWNSYIL  122 (318)
T ss_dssp             EEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEE--EEEETTEE
T ss_pred             EEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCc------------eeEEEecCccc-eEEE--eecCCCEE
Confidence            3444557899999999999 8899999999999999999998            77888999987 4544  45567899


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.++.+++|+.....                                       ..+..+.+|...+..+.+.+++ 
T Consensus       123 ~s~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-  162 (318)
T 4ggc_A          123 SSGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG-  162 (318)
T ss_dssp             EEEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-
T ss_pred             EEEecCCceEeeecCCCc---------------------------------------eeEEEEcCccCceEEEEEcCCC-
Confidence            999999999999987532                                       2335677899999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCC--ceeEEeeccCCCeeEEEecCCCCCeE--EEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          183 QEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l--~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      .++++++.|+.|++||+++++.  ........+...|.+++++|.....+  ++++.++.|++||.+.      ......
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------~~~~~~  236 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSA  236 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------CCEEEE
T ss_pred             CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------cccccc
Confidence            7899999999999999987653  23445567888999999999444544  4567789999999987      554444


Q ss_pred             eccccceEEEEEEcCCCCeeEEE-ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      . .+...+..+.|+|++..++++ ++.|+.|++||+++.               +++..+.+|.+.|++++|+|++++|+
T Consensus       237 ~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------------~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          237 V-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             E-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             c-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            4 467789999999999876543 457999999999875               45677899999999999999999877


Q ss_pred             EEecCCCCCCCCCceEEEEecCC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                              |||.||+|+|||+.+
T Consensus       301 --------S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          301 --------SAAADETLRLWRCFE  315 (318)
T ss_dssp             --------EEETTTEEEEECCSC
T ss_pred             --------EEecCCeEEEEECCC
Confidence                    777789999999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.5e-35  Score=255.48  Aligned_cols=302  Identities=18%  Similarity=0.307  Sum_probs=223.2

Q ss_pred             CCcEEEEEecCCCC---------cEEEEecC----CCcEEEEeccCCCCc------------ccc--cCCCCCCC-eEEE
Q 016547           31 PGEVNRIRELPQNT---------KIVATHTD----SPDVLIWDVEAQPNR------------HAV--LGATNSRP-DLIL   82 (387)
Q Consensus        31 ~~~v~~i~~~~~~~---------~~l~t~~~----dg~v~iwd~~~~~~~------------~~~--~~~~~~~~-~~~~   82 (387)
                      .-+..++.|.|...         .+++.|+.    ...|.+.++.-....            ...  .+....+. ....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  124 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK  124 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence            45668888888331         46777754    346788865411000            000  00011111 3455


Q ss_pred             eccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           83 TGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        83 ~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      ..|.+ .|++++|+|+ +.+|++++.||.|++||+.+......                              ......+
T Consensus       125 ~~h~~-~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------------------~~~~~~~  173 (430)
T 2xyi_A          125 INHEG-EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------------------PSGECQP  173 (430)
T ss_dssp             EEESS-CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------------------TTCCCCC
T ss_pred             EcCCC-cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------------------ccccCCC
Confidence            67776 6999999997 67999999999999999975321100                              0112345


Q ss_pred             ceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-----eeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      ...+.+|...|.+++|+|++..+|++|+.||.|++||+......     ....+..|...|.+++|+|.++.+|++++.|
T Consensus       174 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d  253 (430)
T 2xyi_A          174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD  253 (430)
T ss_dssp             SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC
Confidence            57788999999999999998559999999999999999874321     1345668999999999999668899999999


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  316 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  316 (387)
                      |.|++||+++...   .+++..+..|...|++++|+|++++++++|+.||.|++||++....              .+..
T Consensus       254 g~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------------~~~~  316 (430)
T 2xyi_A          254 QKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------------KLHS  316 (430)
T ss_dssp             SEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEE
T ss_pred             CeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------------CeEE
Confidence            9999999997311   2577788889999999999999988888999999999999997432              3556


Q ss_pred             eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccccc--------chhhhhhhccCceEEEeeecC
Q 016547          317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--------DEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +.+|...|++++|+|++++++++++       .||.|+|||+........        .+++..+.+|...|++++|+|
T Consensus       317 ~~~h~~~v~~i~~sp~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p  388 (430)
T 2xyi_A          317 FESHKDEIFQVQWSPHNETILASSG-------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  388 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEE-------TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred             eecCCCCEEEEEECCCCCCEEEEEe-------CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence            6789999999999999988777554       459999999984211000        255667788999999999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-36  Score=254.45  Aligned_cols=237  Identities=11%  Similarity=0.079  Sum_probs=180.1

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ++.+|++|+.||+|++||+.++            +.+..+.  . ..|.++.|+|+   +++++.|++|++|+.......
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~------------~~~~~~~--~-~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDS------------KTITTIT--T-PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSS------------SCEEEEE--E-ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCC------------cEEEEEe--c-CCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            7789999999999999999988            5555555  2 25778889988   999999999999998743211


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEcc--CCCeeEEEecCCCeEEEEEc
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDA  199 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~  199 (387)
                                                     ++....+.+..+ ..|...|.+++|+|  ++ .++++++.||.|++||+
T Consensus       109 -------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~  156 (343)
T 3lrv_A          109 -------------------------------LDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSY  156 (343)
T ss_dssp             -------------------------------EETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEES
T ss_pred             -------------------------------eecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEEC
Confidence                                           111222222222 36778999999999  88 88999999999999999


Q ss_pred             cCCCCceeEEe-eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce-EEecc-ccceEEEEEEcCCCC
Q 016547          200 RVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEG-HSAAVLCVQWSPDKS  276 (387)
Q Consensus       200 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~  276 (387)
                      ++++  ..... ..+...+++++|+| ++.+|++|+.||.|++||+++      ++.+ ..+.. |...|.+++|+|++.
T Consensus       157 ~~~~--~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~  227 (343)
T 3lrv_A          157 EDDS--QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGY  227 (343)
T ss_dssp             SSSC--EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred             CCCc--EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCC
Confidence            9887  33333 34566899999999 999999999999999999998      6666 77887 999999999999999


Q ss_pred             eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee--EEEEccCCCeEEEEecCCCCCCCC-CceE
Q 016547          277 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSVSDDCDSTGG-GGTL  353 (387)
Q Consensus       277 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~s~s~d~~tg~~-dg~i  353 (387)
                      + |++++ |+.|++||++.......            +..+..|...+.  +++|+|++++++        +++. |+.|
T Consensus       228 ~-l~s~~-~~~v~iwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~l~--------~~s~~d~~i  285 (343)
T 3lrv_A          228 W-MVVEC-DQTVVCFDLRKDVGTLA------------YPTYTIPEFKTGTVTYDIDDSGKNMI--------AYSNESNSL  285 (343)
T ss_dssp             E-EEEEE-SSBEEEEETTSSTTCBS------------SCCCBC-----CCEEEEECTTSSEEE--------EEETTTTEE
T ss_pred             E-EEEEe-CCeEEEEEcCCCCccee------------ecccccccccccceEEEECCCCCEEE--------EecCCCCcE
Confidence            6 56777 55999999998533211            111222333443  699999999888        4444 6999


Q ss_pred             EEEecCC
Q 016547          354 QIWRMSD  360 (387)
Q Consensus       354 ~iw~~~~  360 (387)
                      ++|++..
T Consensus       286 ~v~~~~~  292 (343)
T 3lrv_A          286 TIYKFDK  292 (343)
T ss_dssp             EEEEECT
T ss_pred             EEEEEcc
Confidence            9999963

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=275.38  Aligned_cols=268  Identities=12%  Similarity=0.110  Sum_probs=199.1

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .....+|.+.|++++|+| ++++||+|+.||+|+||+..+.            ..... ..|.. .|.+++|+| +++|+
T Consensus        10 ~~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~------------~~~~~-~~~~~-~V~~l~fsp-g~~L~   73 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV------------EVVIK-LEDRS-AIKEMRFVK-GIYLV   73 (902)
T ss_dssp             EEEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC------------EEEEE-CSSCC-CEEEEEEET-TTEEE
T ss_pred             cccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc------------EEEEE-cCCCC-CEEEEEEcC-CCEEE
Confidence            445579999999999999 8999999999999999998765            23222 23544 799999999 88999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.|++|++||++++..                                        +..+. |...|++++|+|++ .
T Consensus        74 S~s~D~~v~lWd~~~~~~----------------------------------------~~~~~-~~~~V~~v~~sp~g-~  111 (902)
T 2oaj_A           74 VINAKDTVYVLSLYSQKV----------------------------------------LTTVF-VPGKITSIDTDASL-D  111 (902)
T ss_dssp             EEETTCEEEEEETTTCSE----------------------------------------EEEEE-CSSCEEEEECCTTC-S
T ss_pred             EEECcCeEEEEECCCCcE----------------------------------------EEEEc-CCCCEEEEEECCCC-C
Confidence            999999999999986422                                        23333 56789999999999 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCcee---------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVI---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      ++++|+.||.|++||+++++....         ....+|.+.|++++|+|.++..+++|+.||.| +||+++      .+
T Consensus       112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~------~~  184 (902)
T 2oaj_A          112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE------NE  184 (902)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT------TE
T ss_pred             EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC------Cc
Confidence            899999999999999987762100         22356889999999999446899999999999 999998      77


Q ss_pred             ceEEeccc------------------cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC--CCCCc-ee
Q 016547          255 PINKFEGH------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT--TNYPA-GL  313 (387)
Q Consensus       255 ~~~~~~~~------------------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~-~~  313 (387)
                      ++..+..|                  ...|.+++|+|+|++ |++++.||.|++||+++...........  ...+. ..
T Consensus       185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~  263 (902)
T 2oaj_A          185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDY  263 (902)
T ss_dssp             EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTC
T ss_pred             eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcC
Confidence            77777655                  477999999999985 6799999999999998853321100000  00000 00


Q ss_pred             eeeeccCCCCeeEEEEcc----CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          314 FFQHAGHRDKVVDFHWNA----SDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       314 ~~~~~~~~~~v~~~~~~~----~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ......|...|++++|++    ++..++++++.|  .....+.+++|++.
T Consensus       264 ~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~--~~~~~~~v~~~~~~  311 (902)
T 2oaj_A          264 IRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI--SRGDNQSLTMIDLG  311 (902)
T ss_dssp             CCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS--TTSSCCCEEEEEEE
T ss_pred             CCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC--CCCCCceEEEEecC
Confidence            000002456899999964    445777776554  22234589999853

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.7e-34  Score=271.81  Aligned_cols=252  Identities=20%  Similarity=0.335  Sum_probs=212.9

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ....+|.++|++++|+| ++++|++|+.||.|++||+.++            +....+.+|.+ .|.+++|+|++++|++
T Consensus        49 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             EEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEE
T ss_pred             EEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEEEEEEeCCCCEEEE
Confidence            44557999999999999 8899999999999999999988            67788899987 6999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc-CCCe
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQ  183 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  183 (387)
                      ++.||.|++||+.++.                                       .....+.+|...|.+++|+| ++ .
T Consensus       115 ~~~dg~i~vw~~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~-~  154 (814)
T 3mkq_A          115 GSDDLTVKLWNWENNW---------------------------------------ALEQTFEGHEHFVMCVAFNPKDP-S  154 (814)
T ss_dssp             EETTSEEEEEEGGGTS---------------------------------------EEEEEEECCSSCEEEEEEETTEE-E
T ss_pred             EcCCCEEEEEECCCCc---------------------------------------eEEEEEcCCCCcEEEEEEEcCCC-C
Confidence            9999999999997531                                       22356778999999999999 55 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      .+++++.||.|++||++.+.. .......+...+.+++|+|. ++.++++++.||.|++||+++      ++.+..+.+|
T Consensus       155 ~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~  227 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGH  227 (814)
T ss_dssp             EEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECC
T ss_pred             EEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCC
Confidence            999999999999999987763 22233344588999999873 578999999999999999998      8889999999


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...|.+++|+|+++. +++++.||.|++||+...               .....+..|...+.+++|+|++..++++++ 
T Consensus       228 ~~~v~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-  290 (814)
T 3mkq_A          228 MSNVSFAVFHPTLPI-IISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASG-  290 (814)
T ss_dssp             SSCEEEEEECSSSSE-EEEEETTSCEEEEETTTC---------------SEEEEECCSSSSEEEEEECTTCGGGEEEEE-
T ss_pred             CCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------cEEEEeecCCCcEEEEEEccCCCceEEEEE-
Confidence            999999999999995 679999999999999875               345667788899999999999986533322 


Q ss_pred             CCCCCCCCceEEEEecCC
Q 016547          343 DCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       343 d~~tg~~dg~i~iw~~~~  360 (387)
                            .|+.+.+|++..
T Consensus       291 ------~~~~~~~~~~~~  302 (814)
T 3mkq_A          291 ------FDNGFTVLSLGN  302 (814)
T ss_dssp             ------ETTEEEEEECSC
T ss_pred             ------eCCCEEEEEcCC
Confidence                  236788888763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-35  Score=251.39  Aligned_cols=245  Identities=20%  Similarity=0.339  Sum_probs=196.0

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      ++...+.+|.+ .|++++|+|++++|++|+.||.|++||+...                                     
T Consensus         2 ~~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------------------------------   43 (379)
T 3jrp_A            2 SMVVIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------------------------------   43 (379)
T ss_dssp             ---CCEEECCC-CEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------------------------------
T ss_pred             CccEEecCCcc-cEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------------------------------
Confidence            34567889998 7999999999999999999999999999732                                     


Q ss_pred             CCCCCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEE
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILT  232 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~  232 (387)
                       .......+.+|...|++++|+++  + .+|++++.||.|++||+++++......+..|...|.+++|+| +  +.+|++
T Consensus        44 -~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~  120 (379)
T 3jrp_A           44 -THKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLV  120 (379)
T ss_dssp             -EEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred             -cceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEE
Confidence             12233567889999999999876  6 789999999999999999876445667778999999999999 7  899999


Q ss_pred             eeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC-------------CCCeeEEEecCCCeEEEEeCCCCCce
Q 016547          233 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-------------DKSSVFGSSAEDGLLNIWDYEKVGKK  299 (387)
Q Consensus       233 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~ll~s~~~d~~i~vwd~~~~~~~  299 (387)
                      ++.||.|++||++...    ......+..|...|.+++|+|             ++. ++++++.||.|++||++.....
T Consensus       121 ~~~d~~i~v~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          121 ASSDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT  195 (379)
T ss_dssp             EETTSEEEEEECCTTS----CCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTE
T ss_pred             ecCCCcEEEEecCCCC----ceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcc
Confidence            9999999999999732    245556778999999999999             577 4679999999999999874332


Q ss_pred             eccCCCCCCCCceeeeeeccCCCCeeEEEEccC---CCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS---DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      .           .....+.+|...|.+++|+|+   +.+++        +++.||.|++||+...... ....+.....|
T Consensus       196 ~-----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~--------s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~  255 (379)
T 3jrp_A          196 Y-----------VLESTLEGHSDWVRDVAWSPTVLLRSYLA--------SVSQDRTCIIWTQDNEQGP-WKKTLLKEEKF  255 (379)
T ss_dssp             E-----------EEEEEECCCSSCEEEEEECCCCSSSEEEE--------EEETTSCEEEEEESSTTSC-CEEEESSSSCC
T ss_pred             e-----------eeEEEEecccCcEeEEEECCCCCCCCeEE--------EEeCCCEEEEEeCCCCCcc-ceeeeeccccC
Confidence            1           345677889999999999999   55555        5566699999999842100 01233344558


Q ss_pred             CceEEEeeecC
Q 016547          377 KAHVISCTSKP  387 (387)
Q Consensus       377 ~~~v~~~~f~P  387 (387)
                      ...|++++|+|
T Consensus       256 ~~~v~~~~~s~  266 (379)
T 3jrp_A          256 PDVLWRASWSL  266 (379)
T ss_dssp             SSCEEEEEECS
T ss_pred             CCcEEEEEEcC
Confidence            89999999987

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-35  Score=259.11  Aligned_cols=270  Identities=10%  Similarity=0.133  Sum_probs=192.5

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEecc---CCCCcccccCCCCCCCeEEEecc---CCCceEEEE--EC
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE---AQPNRHAVLGATNSRPDLILTGH---QDNAEFALA--MC   96 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~h---~~~~v~~~~--~~   96 (387)
                      ...++|.+.|++++|+| ++++|++|+.||+|++||++   .++.......    ..+..+..+   ....+.++.  ++
T Consensus       105 ~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          105 SLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC----ECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             SEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE----EEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             eeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeecccc----ceeEEEEccCcccccCceEEEEEEc
Confidence            34457999999999999 88999999999999999995   4321111000    122222211   122466776  66


Q ss_pred             CCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC--CCCCeEE
Q 016547           97 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVED  174 (387)
Q Consensus        97 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~  174 (387)
                      +++.+|++++.|+.|++||++++.                                        .+..+..  |...|++
T Consensus       180 ~~~~~l~~~~~d~~i~iwd~~~~~----------------------------------------~~~~~~~~~h~~~v~~  219 (437)
T 3gre_A          180 EEKSLLVALTNLSRVIIFDIRTLE----------------------------------------RLQIIENSPRHGAVSS  219 (437)
T ss_dssp             SSCEEEEEEETTSEEEEEETTTCC----------------------------------------EEEEEECCGGGCCEEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCe----------------------------------------eeEEEccCCCCCceEE
Confidence            889999999999999999997542                                        2355555  8899999


Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee-ccCCCeeEEEecCC---CCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL---DDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      ++|+|++ .+|++|+.||.|++||+++++  ....+. .|...|++++|+|.   ++.+|++|+.||.|++||+++    
T Consensus       220 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~----  292 (437)
T 3gre_A          220 ICIDEEC-CVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK----  292 (437)
T ss_dssp             EEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT----
T ss_pred             EEECCCC-CEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC----
Confidence            9999998 899999999999999999866  455544 67889999966551   577999999999999999987    


Q ss_pred             CCCCceEEecc--------------------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547          251 GVGSPINKFEG--------------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       251 ~~~~~~~~~~~--------------------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  304 (387)
                        ++.+..+.+                          |...|.+++|+ +++ +|++++.|+.|++||+...........
T Consensus       293 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          293 --GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             --TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             --CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCcccceEEec
Confidence              565555543                          55668889998 565 567999999999999988654332211


Q ss_pred             CCCC----------------------CCceeeeeeccCCCCeeEEEEccC-CCeEEEEecCCCCCCCCCceEEEEe
Q 016547          305 RTTN----------------------YPAGLFFQHAGHRDKVVDFHWNAS-DPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       305 ~~~~----------------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      ....                      ...........|...|++++|+++ +..+++       +|+.||.|+||+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~-------s~~~dG~I~iw~  437 (437)
T 3gre_A          369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV-------ACDNSGLIGIFQ  437 (437)
T ss_dssp             C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE-------EEETTSCEEEEC
T ss_pred             ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE-------EEcCCceEEEeC
Confidence            1000                      000011122348999999999998 344555       555669999995

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=254.62  Aligned_cols=278  Identities=19%  Similarity=0.305  Sum_probs=211.2

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      ++.+++|+++..            +....+.+|.+ .|++++|+| ++++|++|+.||.|++||+.+.............
T Consensus        22 ~~~~~v~~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   88 (408)
T 4a11_B           22 ESTRRVLGLELN------------KDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC   88 (408)
T ss_dssp             HHHHHHHTEEEC------------TTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE
T ss_pred             cCcceeeccccC------------cceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc
Confidence            456788888877            67788889987 799999999 9999999999999999999875432221100000


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  211 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  211 (387)
                                                 ........+|...|.+++|+|++..+|++++.||.|++||+++++  ....+ 
T Consensus        89 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~-  138 (408)
T 4a11_B           89 ---------------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVF-  138 (408)
T ss_dssp             ---------------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEE-
T ss_pred             ---------------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceec-
Confidence                                       000011246899999999999555899999999999999999877  34443 


Q ss_pred             ccCCCeeEEEecCC--CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547          212 AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  289 (387)
Q Consensus       212 ~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~  289 (387)
                      .+...+.++.++|.  ++.++++++.||.|++||+++      ++.+..+..|...|.+++|+|+++++|++++.||.|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            47788999999883  233999999999999999998      8888999999999999999999998788999999999


Q ss_pred             EEeCCCCCceeccCCC-CCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc----
Q 016547          290 IWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR----  364 (387)
Q Consensus       290 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~----  364 (387)
                      +||++........... .............+|...|.+++|+|++++++        +++.||.|++||+......    
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~vwd~~~~~~~~~~~  284 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL--------TVGTDNRMRLWNSSNGENTLVNY  284 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTTCCBCCCCC
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE--------EecCCCeEEEEECCCCccceecc
Confidence            9999876433221111 11111112233467889999999999999887        6666789999998743211    


Q ss_pred             -------------------------------------ccchhhhhhhccCceEEEeeecC
Q 016547          365 -------------------------------------PQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       365 -------------------------------------~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                                                           .+++++..+.+|.+.|++++|+|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence                                                 24466777788999999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-34  Score=245.21  Aligned_cols=236  Identities=25%  Similarity=0.399  Sum_probs=196.7

Q ss_pred             CCeEEEeccCCCceEEEEECCC-CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  155 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (387)
                      ....+|++|.+ .|++|+|+|+ +++|+||+.|++|++||+.+....                                 
T Consensus        29 ~l~~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------------------------------   74 (340)
T 4aow_A           29 TLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------------------------------   74 (340)
T ss_dssp             EEEEEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred             EEEEEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence            34557999998 7999999997 689999999999999999754321                                 


Q ss_pred             CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                        ...+...+.+|...|.+++|+|++ .+|++++.|+.|++|+.....  .......+...+..+.+++ .+.+|++++.
T Consensus        75 --~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~  148 (340)
T 4aow_A           75 --YGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSS-DNRQIVSGSR  148 (340)
T ss_dssp             --SEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSSCEEEEET
T ss_pred             --cceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc--eeeeecCCCCceeEEEEee-cCccceeecC
Confidence              122346778999999999999998 889999999999999998876  5566667788899999999 9999999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCC-eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                      |+.+++||....     ........+|...+..++|++++. .++++++.|+.|++||++..               ...
T Consensus       149 d~~~~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------------~~~  208 (340)
T 4aow_A          149 DKTIKLWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------------KLK  208 (340)
T ss_dssp             TSCEEEECTTSC-----EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------------EEE
T ss_pred             CCeEEEEEeCCC-----ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------------cee
Confidence            999999998762     234445677899999999998754 35678999999999999875               456


Q ss_pred             eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..+.+|...|++++|+|++++++        +|+.||.|++||+.      ..+++..+.. ...|.++.|+|
T Consensus       209 ~~~~~h~~~v~~~~~s~~~~~l~--------s~s~Dg~i~iwd~~------~~~~~~~~~~-~~~v~~~~~~~  266 (340)
T 4aow_A          209 TNHIGHTGYLNTVTVSPDGSLCA--------SGGKDGQAMLWDLN------EGKHLYTLDG-GDIINALCFSP  266 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEE--------EEETTCEEEEEETT------TTEEEEEEEC-SSCEEEEEECS
T ss_pred             eEecCCCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEec------cCceeeeecC-CceEEeeecCC
Confidence            67789999999999999999877        67777999999999      6777777664 46899999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.3e-34  Score=254.30  Aligned_cols=276  Identities=20%  Similarity=0.319  Sum_probs=218.9

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ....+|.+.|.+++|+   +++|++|+.||+|++||+.++            +....+.+|.. .|.++.|+  ++++++
T Consensus       153 ~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~s  214 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG------------ECIHTLYGHTS-TVRCMHLH--EKRVVS  214 (445)
T ss_dssp             EECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEE--TTEEEE
T ss_pred             EEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC------------cEEEEECCCCC-cEEEEEec--CCEEEE
Confidence            3455899999999996   469999999999999999988            67788899987 68999994  678999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCccc--CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      |+.||.|++||+.++............  .....+..  ......++.+.+|+....+.+..+.+|...|.++.|  ++ 
T Consensus       215 ~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-  289 (445)
T 2ovr_B          215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-  289 (445)
T ss_dssp             EETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC--EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-
T ss_pred             EeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCE--EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-
Confidence            999999999999876543332211100  00001111  112234667788888888888889999999999999  55 


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-  261 (387)
                      ..+++++.||.|++||+++++  ....+..|...+.++.++   ++++++|+.||.|++||+++      ++++..+.. 
T Consensus       290 ~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~  358 (445)
T 2ovr_B          290 IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQGP  358 (445)
T ss_dssp             SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEECST
T ss_pred             CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEccC
Confidence            789999999999999999887  677788899999988874   56999999999999999998      888888876 


Q ss_pred             --ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-----ccCCCCeeEEEEccCCC
Q 016547          262 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNASDP  334 (387)
Q Consensus       262 --~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~  334 (387)
                        |...|.+++|++  + ++++++.||.|++||+.++..               +..+     .+|.+.|++++|+|++.
T Consensus       359 ~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          359 NKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF---------------IRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             TSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE---------------EEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             CCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCCce---------------eeeeeccccCCCCceEEEEEecCCEE
Confidence              888999999964  4 577999999999999998532               2223     46888999999999887


Q ss_pred             eEEEEecCCCCCCCCCce----EEEEecCC
Q 016547          335 WTVVSVSDDCDSTGGGGT----LQIWRMSD  360 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~----i~iw~~~~  360 (387)
                      .++        +|+.||+    |.+||++.
T Consensus       421 ~la--------~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          421 VCA--------VGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEE--------EECSSSSSCCEEEEEECCC
T ss_pred             EEE--------EcccCCCCccEEEEEECCC
Confidence            665        5555576    99999983

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-35  Score=253.77  Aligned_cols=246  Identities=12%  Similarity=0.093  Sum_probs=189.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .-...|.+++|+| +|+++||++.|++|+  |....            +   .+.+|.. .|++++|+|+|       .+
T Consensus        13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~------------~---~l~gh~~-~v~~V~FsPdg-------~~   66 (588)
T 2j04_A           13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYA------------K---DINCNSK-NLFHVKEFPLE-------FE   66 (588)
T ss_dssp             CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCC------------S---CCSSBGG-GTEEEEEECCC-------CC
T ss_pred             HhhccEEEEEECC-CCCEEEEEcCCceee--ccccc------------c---eecCCCc-cEEEEEECCCC-------Cc
Confidence            3468899999999 999999999999999  64444            2   2368988 69999999998       45


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +.+.+|+.+...                                         ...+ .|...|.+++|+|+| ..++++
T Consensus        67 ~~~~~~~~~~~~-----------------------------------------~~~~-~~~~~V~~vawSPdG-~~LAs~  103 (588)
T 2j04_A           67 NKLDFELAQQNG-----------------------------------------LLNS-QPVCYPRVCKPSPID-DWMAVL  103 (588)
T ss_dssp             CTTTTSCCCSSC-----------------------------------------SSTT-SCSCCEEEEEECSSS-SCEEEE
T ss_pred             ceEEEEeCCCce-----------------------------------------Eeec-CCCCcEEEEEECCCC-CEEEEE
Confidence            555555543211                                         0111 447889999999999 889999


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCC-----CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC-------ce
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDA-----DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS-------PI  256 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------~~  256 (387)
                      +.||.|++||...    ....+. |..     .+.+++|+| ++++|++|+.||+|++||+..      +.       .+
T Consensus       104 s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~------~~l~~~~~i~l  171 (588)
T 2j04_A          104 SNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK------NSENTPEFYFE  171 (588)
T ss_dssp             ETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC------CTTTCCCCEEE
T ss_pred             eCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC------Cccccccceee
Confidence            9999999999543    445555 554     499999999 999999999999999999987      43       25


Q ss_pred             EEe----ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-ccCCCCeeEEEEcc
Q 016547          257 NKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNA  331 (387)
Q Consensus       257 ~~~----~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~  331 (387)
                      .++    .+|...|.+++|+|+|  + ++++.|+.|++||+......            .....+ .+|...|.+++|+ 
T Consensus       172 ~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~------------~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          172 SSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQ------------PVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             EEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSC------------CCEEEEECCCSSCCCCEEEE-
T ss_pred             eeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccc------------cceeeecccccCcEEEEEEE-
Confidence            666    6778899999999999  4 57778999999999874311            112334 4788899999999 


Q ss_pred             CCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee--cC
Q 016547          332 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS--KP  387 (387)
Q Consensus       332 ~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f--~P  387 (387)
                       ++.++        +++ |++|++||+.      .++......+|.+.|.+++|  +|
T Consensus       236 -g~~LA--------Sa~-~~tIkLWd~~------~~~~~~~~~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          236 -DYKVV--------LTC-PGYVHKIDLK------NYSISSLKTGSLENFHIIPLNHEK  277 (588)
T ss_dssp             -TTEEE--------EEC-SSEEEEEETT------TTEEEEEECSCCSCCCEEEETTCS
T ss_pred             -CCEEE--------EEe-CCeEEEEECC------CCeEEEEEcCCCceEEEEEeeeCC
Confidence             56665        333 4899999999      45543333389999999999  76

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-33  Score=239.96  Aligned_cols=260  Identities=13%  Similarity=0.054  Sum_probs=202.2

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEec-cCCCCcccccCCCCCCCeEEEec--cCCCceEEEEECC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCP   97 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~~v~~~~~~~   97 (387)
                      .......+|.+.|++++|+| +++ +|++|+.||.|++||+ .++             ....+.+  |.. .|.+++|+|
T Consensus        47 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~-------------~~~~~~~~~~~~-~v~~l~~~~  111 (342)
T 1yfq_A           47 VDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSP-------------SFQALTNNEANL-GICRICKYG  111 (342)
T ss_dssp             EEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSS-------------SEEECBSCCCCS-CEEEEEEET
T ss_pred             ccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCC-------------ceEeccccCCCC-ceEEEEeCC
Confidence            33455668999999999999 788 9999999999999999 776             2356677  877 799999999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                       +++|++++.|+.|++||+++.......                               ...+++..+. |...|.+++|
T Consensus       112 -~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A          112 -DDKLIAASWDGLIEVIDPRNYGDGVIA-------------------------------VKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             -TTEEEEEETTSEEEEECHHHHTTBCEE-------------------------------EEESCSSSSS-SCCCEEEEEE
T ss_pred             -CCEEEEEcCCCeEEEEccccccccccc-------------------------------ccCCeeeEEe-eCCceEEEEe
Confidence             999999999999999998741000000                               0001112233 7789999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccC-CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      +|++   +++++.|+.|++||++. ...........|...+.+++|+|.+++++++++.||.|++||++........+..
T Consensus       159 ~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          159 NSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             cCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            9875   89999999999999998 6544445566788899999999845789999999999999999872100012677


Q ss_pred             EEeccccc---------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC-CCCeeE
Q 016547          257 NKFEGHSA---------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVD  326 (387)
Q Consensus       257 ~~~~~~~~---------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~  326 (387)
                      ..+..|..         .|.+++|+|++++ |++++.||.|++||+.+.               ..+..+.+| ...|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~  299 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceE
Confidence            78887765         9999999999996 579999999999999875               346667888 999999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCce-EEEEec
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGT-LQIWRM  358 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~-i~iw~~  358 (387)
                      ++  |++.+++        +|+.||. .+.|..
T Consensus       300 ~~--~~~~~l~--------s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          300 IA--CSDNILC--------LATSDDTFKTNAAI  322 (342)
T ss_dssp             EE--ECSSEEE--------EEEECTHHHHCSSS
T ss_pred             ec--CCCCeEE--------EEecCCcccccccc
Confidence            99  9888776        5555687 554443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.1e-35  Score=254.99  Aligned_cols=240  Identities=13%  Similarity=0.111  Sum_probs=169.9

Q ss_pred             CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--------CCCEEEEecCCCeEEE
Q 016547           42 QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--------TEPYVLSGGKDKSVVL  113 (387)
Q Consensus        42 ~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--------~~~~l~s~~~d~~i~v  113 (387)
                      .++.+||+|+.|++|+|||+++++....       .....+.+|.+ .|++++|+|        ++++|++|+.|++|++
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~-------~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQ-------HVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEE-------EEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcccee-------eeecccCCCCC-ceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence            3667899999999999999988732110       12234678998 799999998        7899999999999999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      ||+.+..                                        +...+..|...|.+++|+|++..+|++++.|+.
T Consensus       171 Wd~~~~~----------------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          171 WRLTDEG----------------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             EEEETTE----------------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             EECCCCc----------------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence            9997532                                        224566788999999999998678999999999


Q ss_pred             EEEEEccCCCCcee-----------------------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          194 LILWDARVGTSPVI-----------------------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       194 i~iwd~~~~~~~~~-----------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      |++||+++++....                       ....+|...+.++.|.+.++..+++++.|+.+++||+..    
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~----  286 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA----  286 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc----
Confidence            99999987652110                       112457788999998744999999999999999999987    


Q ss_pred             CCCCceEEeccccceEEEEEEc-------------------CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547          251 GVGSPINKFEGHSAAVLCVQWS-------------------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  311 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~-------------------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  311 (387)
                        ++....+..|...+..+.+.                   +.+..++++|+.||.|++||+....              
T Consensus       287 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~--------------  350 (393)
T 4gq1_A          287 --NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD--------------  350 (393)
T ss_dssp             -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT--------------
T ss_pred             --CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc--------------
Confidence              44444444444444333332                   3345567889999999999998752              


Q ss_pred             eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                       ......+|..+|.+++|+|+|++|+        +++. +.+.+|.+.
T Consensus       351 -~~~~~~~~~~~V~svafspdG~~LA--------~as~-~Gv~lvrL~  388 (393)
T 4gq1_A          351 -SNSIPIQLGMPIVDFCWHQDGSHLA--------IATE-GSVLLTRLM  388 (393)
T ss_dssp             -CCEEEEECSSCEEEEEECTTSSEEE--------EEES-SEEEEEEEG
T ss_pred             -EEEEecCCCCcEEEEEEcCCCCEEE--------EEeC-CCeEEEEEe
Confidence             2344567888999999999999876        3333 356777665

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-33  Score=244.01  Aligned_cols=256  Identities=13%  Similarity=0.094  Sum_probs=201.1

Q ss_pred             cCCCcEEEEEecCCCCcEE-EEecCCCcEEEEecc--CCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCCCCEEE
Q 016547           29 IHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~~~~l~  103 (387)
                      +|.+.|++++|+| ++++| ++|+.||.|++||+.  ++            .....+.  .|.. .|.+++|+|++++|+
T Consensus       100 ~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~~~~-~v~~~~~sp~~~~l~  165 (450)
T 2vdu_B          100 PIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK------------NVLKLRKRFCFSK-RPNAISIAEDDTTVI  165 (450)
T ss_dssp             CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS------------SCEEEEEEEECSS-CEEEEEECTTSSEEE
T ss_pred             ccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC------------ceeeeeecccCCC-CceEEEEcCCCCEEE
Confidence            5778999999999 67775 999999999999998  66            5566665  4455 689999999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC---
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS---  180 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  180 (387)
                      +++.||.|++|++.+.....                                    .....+.+|...|.+++|+|+   
T Consensus       166 ~~~~~g~v~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~  209 (450)
T 2vdu_B          166 IADKFGDVYSIDINSIPEEK------------------------------------FTQEPILGHVSMLTDVHLIKDSDG  209 (450)
T ss_dssp             EEETTSEEEEEETTSCCCSS------------------------------------CCCCCSEECSSCEEEEEEEECTTS
T ss_pred             EEeCCCcEEEEecCCccccc------------------------------------ccceeeecccCceEEEEEcCCCCC
Confidence            99999999999997643211                                    022356788999999999999   


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      + .+|++++.|+.|++||+++++  .... ..+|...|.+++|+  ++.+|++++.|+.|++||+++      ++++..+
T Consensus       210 ~-~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~~  278 (450)
T 2vdu_B          210 H-QFIITSDRDEHIKISHYPQCF--IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLSTF  278 (450)
T ss_dssp             C-EEEEEEETTSCEEEEEESCTT--CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEEE
T ss_pred             C-cEEEEEcCCCcEEEEECCCCc--eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeeee
Confidence            7 899999999999999998877  3444 56899999999999  789999999999999999998      7777777


Q ss_pred             ccc-------------------------cceEEEEEEcCCCCeeEEEecCCCeEEEEeC--CCCCceeccCCCCCCCCce
Q 016547          260 EGH-------------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY--EKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       260 ~~~-------------------------~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~  312 (387)
                      ..+                         ...|.+++|+|+++++++++..|+.|++|++  .....            ..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------------l~  346 (450)
T 2vdu_B          279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD------------LA  346 (450)
T ss_dssp             ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC------------EE
T ss_pred             cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc------------ee
Confidence            532                         3568999999999976644448999999999  33211            13


Q ss_pred             eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          313 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .+..+..| ..|.+++|+|+ ..+++..+.+. .++.++.|.+|.+..
T Consensus       347 ~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~-~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          347 LKQIITFP-YNVISLSAHND-EFQVTLDNKES-SGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEECS-SCEEEEEEETT-EEEEEECCTTC-CSSCCCSEEEEEEET
T ss_pred             eccEeccC-CceEEEEecCC-cEEEEEecccC-CCCCCcceEEEEEEc
Confidence            45556667 88999999994 44443333321 344578899998763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=249.05  Aligned_cols=283  Identities=16%  Similarity=0.247  Sum_probs=198.1

Q ss_pred             eeeeecCC------------CcEEEEEecCCCC--cEEEEecCCCcEEEEeccCCCCcccccCCCC--------------
Q 016547           24 KHKTIIHP------------GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHAVLGATN--------------   75 (387)
Q Consensus        24 ~~~~~~h~------------~~v~~i~~~~~~~--~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~--------------   75 (387)
                      .....+|.            +.|++++|+| ++  .+|++++.||+|++||+.+............              
T Consensus        74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEECCCCEEEGGGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             ecccccccccccccccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            34556788            8899999999 55  7899999999999999987432110000000              


Q ss_pred             -------------CCCeEE-EeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc-cCCCcccCCCCCCcee
Q 016547           76 -------------SRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSII  140 (387)
Q Consensus        76 -------------~~~~~~-~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~  140 (387)
                                   ..+... ..+|.. .|.+++|+|++++|++| .|+.|++||++....... ...             
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-------------  217 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHTY-HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI-------------  217 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCSS-CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC-------------
T ss_pred             EeccccchheeeeccceEEeccCCCc-ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec-------------
Confidence                         001112 357877 79999999999999999 799999999984221100 000             


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--eeEEeeccCC---
Q 016547          141 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDA---  215 (387)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~---  215 (387)
                                          ....+.+|...|.+++|+|++..+|++++.||.|++||+++++..  ....+..|..   
T Consensus       218 --------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  277 (447)
T 3dw8_B          218 --------------------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN  277 (447)
T ss_dssp             --------------------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred             --------------------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence                                001356889999999999997678999999999999999987721  1455666665   


Q ss_pred             ---------CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce---------------EEEEEE
Q 016547          216 ---------DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA---------------VLCVQW  271 (387)
Q Consensus       216 ---------~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~  271 (387)
                               .|.+++|+| ++++|++++. +.|++||++..     ++++..+..|...               +..++|
T Consensus       278 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  350 (447)
T 3dw8_B          278 RSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCW  350 (447)
T ss_dssp             CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE
T ss_pred             cccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccccccccccccceEEEE
Confidence                     899999999 9999999999 99999999853     5677777777542               334999


Q ss_pred             cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC-----C------------ceeeeeeccCCCCeeEEEEccCCC
Q 016547          272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY-----P------------AGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      +|++++ |++++.||.|++||+................     .            .........+...|..++|+|+++
T Consensus       351 s~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~  429 (447)
T 3dw8_B          351 NGSDSV-VMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN  429 (447)
T ss_dssp             CTTSSE-EEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS
T ss_pred             CCCCCE-EEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC
Confidence            999996 5799999999999999854332111110000     0            000111123456899999999999


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .++++        +. +.+++|.-+
T Consensus       430 ~la~~--------~~-~~~~~~~~~  445 (447)
T 3dw8_B          430 IIAVA--------TT-NNLYIFQDK  445 (447)
T ss_dssp             EEEEE--------CS-SCEEEEECC
T ss_pred             EEEEE--------ec-ceeeeeccc
Confidence            87643        22 358888754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-33  Score=241.28  Aligned_cols=243  Identities=14%  Similarity=0.253  Sum_probs=192.9

Q ss_pred             eEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           79 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        79 ~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      ...+.+|.+ .|++++|+|++++|++|+.||.|++||+.+...                                    .
T Consensus         4 ~~~~~gH~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~   46 (351)
T 3f3f_A            4 QPFDSGHDD-LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------N   46 (351)
T ss_dssp             CCEECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------C
T ss_pred             cccCccccc-ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------c
Confidence            345788987 799999999999999999999999999975321                                    1


Q ss_pred             CCCceeecCCCCCeEEEEEcc--CCCeeEEEecCCCeEEEEEccCCCC-------ceeEEeeccCCCeeEEEecCCC--C
Q 016547          159 VGPRGIYNGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDARVGTS-------PVIKVEKAHDADLHCVDWNPLD--D  227 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~--~  227 (387)
                      ......+.+|...|.+++|+|  ++ .+|++++.||.|++||++.++.       .....+..|...|.+++|+| +  +
T Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  124 (351)
T 3f3f_A           47 WELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLG  124 (351)
T ss_dssp             EEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGC
T ss_pred             ceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCC
Confidence            123356778999999999999  46 7899999999999999988642       24566778999999999999 8  9


Q ss_pred             CeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-------------ccccceEEEEEEcCC---CCeeEEEecCCCeEEEE
Q 016547          228 NLILTGSADNSVRMFDRRNLTSNGVGSPINKF-------------EGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIW  291 (387)
Q Consensus       228 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~---~~~ll~s~~~d~~i~vw  291 (387)
                      .+|++++.||.|++||+++      .+.+..+             ..|...+.+++|+|+   +. ++++++.|+.+.+|
T Consensus       125 ~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~  197 (351)
T 3f3f_A          125 LKLACLGNDGILRLYDALE------PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQ  197 (351)
T ss_dssp             SEEEEEETTCEEEEEECSS------TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEE
T ss_pred             cEEEEecCCCcEEEecCCC------hHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEE
Confidence            9999999999999999987      3333222             157788999999997   66 56789999999877


Q ss_pred             eCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC---eEEEEecCCCCCCCCCceEEEEecCCCcc-----
Q 016547          292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLIY-----  363 (387)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~s~s~d~~tg~~dg~i~iw~~~~~~~-----  363 (387)
                      +......             .....+.+|...|++++|+|++.   .+++       +|+.||.|++||+.....     
T Consensus       198 ~~~~~~~-------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-------s~~~dg~i~iwd~~~~~~~~~~~  257 (351)
T 3f3f_A          198 RGKDGKL-------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIA-------TGCKDGRIRIFKITEKLSPLASE  257 (351)
T ss_dssp             ECTTSCE-------------EEEEECCCCCSCEEEEEECCCSSCSSEEEE-------EEETTSCEEEEEEEECC------
T ss_pred             ccCCCce-------------eeeeecCCCCcceeEEEECCCCCCcceEEE-------EEcCCCeEEEEeCCCCcCccccC
Confidence            7765321             34667788999999999999983   3444       555669999999984210     


Q ss_pred             -----------------------------------cccchhhhhhhccCceEEEeeecC
Q 016547          364 -----------------------------------RPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       364 -----------------------------------~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                                                         ....+++..+.+|.+.|++++|+|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          258 ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ---------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence                                               001256777889999999999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=245.97  Aligned_cols=254  Identities=9%  Similarity=0.078  Sum_probs=191.3

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCCEEEEec
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+|.+.|++++|+| ++       .++.+.+|+.+..               ..+. .|. ..|.+++|+|+|++||+++
T Consensus        49 ~gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~---------------~~~~~~~~-~~V~~vawSPdG~~LAs~s  104 (588)
T 2j04_A           49 NCNSKNLFHVKEFP-LE-------FENKLDFELAQQN---------------GLLNSQPV-CYPRVCKPSPIDDWMAVLS  104 (588)
T ss_dssp             SSBGGGTEEEEEEC-CC-------CCCTTTTSCCCSS---------------CSSTTSCS-CCEEEEEECSSSSCEEEEE
T ss_pred             cCCCccEEEEEECC-CC-------CcceEEEEeCCCc---------------eEeecCCC-CcEEEEEECCCCCEEEEEe
Confidence            48999999999999 65       4555555554432               1112 343 4799999999999999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-----CeEEEEEccCC
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-----TVEDVTFCPSS  181 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~  181 (387)
                      .||.|++||.+.                                          .+..+. |..     .|.+++|+|+|
T Consensus       105 ~dg~V~iwd~~~------------------------------------------~l~~l~-~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A          105 NNGNVSVFKDNK------------------------------------------MLTNLD-SKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             TTSCEEEEETTE------------------------------------------EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred             CCCcEEEEeCCc------------------------------------------eeeecc-CCCccccccEEEEEEcCCC
Confidence            999999999642                                          112333 443     59999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCC--c---eeEEe----eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC
Q 016547          182 AQEFCSVGDDSCLILWDARVGTS--P---VIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  252 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~--~---~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  252 (387)
                       ++|++|+.||+|++||+..+..  +   .+..+    .+|...|.+++|+| ++  +++++.|+.|++||+..      
T Consensus       142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~------  211 (588)
T 2j04_A          142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSA------  211 (588)
T ss_dssp             -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCS------
T ss_pred             -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCC------
Confidence             8999999999999999988752  1   23444    56778999999999 87  88899999999999987      


Q ss_pred             CC---ceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547          253 GS---PINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       253 ~~---~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                      ..   ...++ .+|...|.+++|+  +. .+|+++ ++.|++||+...               .......+|...|.+++
T Consensus       212 ~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~---------------~~~~~~~gh~~~V~~va  272 (588)
T 2j04_A          212 SSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY---------------SISSLKTGSLENFHIIP  272 (588)
T ss_dssp             SSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT---------------EEEEEECSCCSCCCEEE
T ss_pred             CccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC---------------eEEEEEcCCCceEEEEE
Confidence            44   33556 4788999999999  55 466777 699999999874               22122338999999999


Q ss_pred             E--ccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchh-----------------hhhhhccCceEEEeeecC
Q 016547          329 W--NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV-----------------LAELEKFKAHVISCTSKP  387 (387)
Q Consensus       329 ~--~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~f~P  387 (387)
                      |  +|++..++        +++.||+ ++|..+.....+.+..                 +..+.+ ...|++++|||
T Consensus       273 ~~~s~d~~~La--------~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP  340 (588)
T 2j04_A          273 LNHEKESTILL--------MSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP  340 (588)
T ss_dssp             ETTCSSCEEEE--------ECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT
T ss_pred             eeeCCCCCEEE--------EEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC
Confidence            9  99997776        6777799 9999864443333332                 222222 45699999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.4e-32  Score=238.96  Aligned_cols=282  Identities=9%  Similarity=0.055  Sum_probs=219.6

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      +....+.+...+.+++|+| ++.++++++.|+.|++||+.+++.....       ....+.+|.. .|.+++|+++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~~~~~~~~-~v~~~~~~~~~~~~  184 (433)
T 3bws_A          114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLS-------PPEKYKKKLG-FVETISIPEHNELW  184 (433)
T ss_dssp             EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEEC-------CCHHHHTTCC-EEEEEEEGGGTEEE
T ss_pred             eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeec-------CcccccccCC-ceeEEEEcCCCEEE
Confidence            3344455566678999999 8999999999999999999987321100       0003456766 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|+.|++||++++.                                        ....+..|...+.+++|+|++.
T Consensus       185 ~s~~~d~~v~~~d~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~  224 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLA----------------------------------------YKATVDLTGKWSKILLYDPIRD  224 (433)
T ss_dssp             EEEGGGTEEEEEETTTCC----------------------------------------EEEEEECSSSSEEEEEEETTTT
T ss_pred             EEECCCCEEEEEECCCce----------------------------------------EEEEEcCCCCCeeEEEEcCCCC
Confidence            999999999999997532                                        2345567888999999999995


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee--------CCCeEEEEEeccCCCCCCCC
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--------ADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------~dg~i~~~d~~~~~~~~~~~  254 (387)
                      .++++++.++.|++||+++++  ....+. +...+.+++|+| +++++++++        .||.|++||+++      ++
T Consensus       225 ~l~~~~~~~~~i~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~  294 (433)
T 3bws_A          225 LVYCSNWISEDISVIDRKTKL--EIRKTD-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EK  294 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTE--EEEECC-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TE
T ss_pred             EEEEEecCCCcEEEEECCCCc--EEEEec-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------Cc
Confidence            555777789999999998876  444444 345699999999 898998888        588999999997      66


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      .+..+ .|...+.+++|+|++++++++++.|+.|++||+...               .....+ .+...+.+++|+|+++
T Consensus       295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---------------~~~~~~-~~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---------------KVQKSI-PVFDKPNTIALSPDGK  357 (433)
T ss_dssp             EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---------------EEEEEE-ECSSSEEEEEECTTSS
T ss_pred             EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---------------cEEEEe-cCCCCCCeEEEcCCCC
Confidence            65555 466788999999999988888899999999999864               223333 3667899999999999


Q ss_pred             eEEEEecCC-------CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          335 WTVVSVSDD-------CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       335 ~l~~s~s~d-------~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++++++..+       .++|+.||.|++||+.      +++.+..+.. ...+.+++|+|
T Consensus       358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~  410 (433)
T 3bws_A          358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT------TDTVKEFWEA-GNQPTGLDVSP  410 (433)
T ss_dssp             EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT------TTEEEEEEEC-SSSEEEEEECT
T ss_pred             EEEEEecCCCccccccccccccceEEEEEECC------CCcEEEEecC-CCCCceEEEcC
Confidence            888766542       1246668999999998      6777777765 45789999987

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.2e-33  Score=238.20  Aligned_cols=290  Identities=13%  Similarity=0.099  Sum_probs=196.5

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSG  105 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~  105 (387)
                      ...|.+.|++++|+| ++++||+|+.+| ++|||+++.            ........ .  .+..+++.++++.+ +++
T Consensus        15 ~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV------------AHIMSQEM-R--HLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             ----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE------------EEEEEEEC-S--CCCEEEECTTSSEEEEEC
T ss_pred             cccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc------------ceeeeeec-C--CeEEEEEcCCCCEEEEEE
Confidence            357999999999999 889999998775 789998766            22222222 2  26788999988877 567


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCccc---CCCCCCceeccCCCCCCCCCCCCCCCCC-CCceeecCCCCCeEEEEEccCC
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +.|++|++||+.++............   ...... ... .   .+..+.+|+.... +.+..+..   +...+++++ .
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~-~~~-~---~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~  148 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF-IVV-S---YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-G  148 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE-EEE-E---ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-T
T ss_pred             CCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE-EEE-E---EcCEEEEEECCCCceeeEEecc---CCceEEEEc-c
Confidence            88899999999887554332211100   000010 111 0   1334556665555 44444443   444556666 3


Q ss_pred             CeeEEE-ecCCCeEEEEEccCCCC--------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEEec
Q 016547          182 AQEFCS-VGDDSCLILWDARVGTS--------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRR  245 (387)
Q Consensus       182 ~~~l~~-~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d~~  245 (387)
                       .++++ |+.||.|++||++++..              +....+.+|...|++++|+| ++++|++|+.||+ |++||++
T Consensus       149 -~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          149 -LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             -EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETT
T ss_pred             -EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECC
Confidence             44444 78999999999987541              11567789999999999999 9999999999998 9999999


Q ss_pred             cCCCCCCCCceEEec-c-ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC--------CCCCCceeee
Q 016547          246 NLTSNGVGSPINKFE-G-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR--------TTNYPAGLFF  315 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~~~~~  315 (387)
                      +      ++++..+. + |...|.+++|+|++++ |++++.|+.|++||++...........        ...+......
T Consensus       227 ~------~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (355)
T 3vu4_A          227 D------GVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK  299 (355)
T ss_dssp             T------CCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred             C------CcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence            8      88999998 5 9999999999999996 679999999999999864321110000        0000001111


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....+......++|++++++++        +++.||.+++|++.
T Consensus       300 ~~~~~~~~~~~~a~~~d~~~l~--------~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          300 LSVDKHVRGCKIAWISESSLVV--------VWPHTRMIETFKVV  335 (355)
T ss_dssp             CCCCTTCCCCEEEESSSSEEEE--------EETTTTEEEEEEEE
T ss_pred             eccCCCCCceEEEEeCCCCEEE--------EEeCCCeEEEEEEE
Confidence            1112233457799999999888        66678999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.5e-33  Score=238.21  Aligned_cols=204  Identities=15%  Similarity=0.099  Sum_probs=166.0

Q ss_pred             CCCcEEEEEecCCCCcEEE--EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC
Q 016547           30 HPGEVNRIRELPQNTKIVA--THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~--t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      +...+.+++|+| +++++|  +++.|++|+|||++++            +++..+. |.. .|.+++|+|+|++|++++.
T Consensus       132 ~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~------------~~~~~~~-~~~-~V~~v~fspdg~~l~s~s~  196 (365)
T 4h5i_A          132 ADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDL------------TEKFEIE-TRG-EVKDLHFSTDGKVVAYITG  196 (365)
T ss_dssp             TTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTT------------EEEEEEE-CSS-CCCEEEECTTSSEEEEECS
T ss_pred             cccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCC------------cEEEEeC-CCC-ceEEEEEccCCceEEeccc
Confidence            445689999999 788765  4557999999999988            5666665 544 5899999999999999985


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      + .+++|+..++....                                      ......|...|.+++|+|++ ..+++
T Consensus       197 ~-~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~v~~v~fspdg-~~l~~  236 (365)
T 4h5i_A          197 S-SLEVISTVTGSCIA--------------------------------------RKTDFDKNWSLSKINFIADD-TVLIA  236 (365)
T ss_dssp             S-CEEEEETTTCCEEE--------------------------------------EECCCCTTEEEEEEEEEETT-EEEEE
T ss_pred             e-eEEEEEeccCccee--------------------------------------eeecCCCCCCEEEEEEcCCC-CEEEE
Confidence            5 56666665432211                                      12345688899999999999 88888


Q ss_pred             ecCCC----eEEEEEccCCCCce--eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-c
Q 016547          188 VGDDS----CLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-E  260 (387)
Q Consensus       188 ~~~dg----~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~  260 (387)
                      ++.|+    .+++||+.......  ...+..|...|++++|+| ++++||+|+.|+.|+|||+++      ++++..+ +
T Consensus       237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~------~~~~~~~~~  309 (365)
T 4h5i_A          237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKD------LSMSKIFKQ  309 (365)
T ss_dssp             EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEEEEETT
T ss_pred             EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCC------CcEEEEecC
Confidence            88776    68889987765322  345678899999999999 999999999999999999998      8888875 7


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +|...|++++|+|||++ ||+++.|++|+|||+...
T Consensus       310 gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTY-VASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSSSCEEEEEECTTSCE-EEEEETTSEEEEEECCTT
T ss_pred             cccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC
Confidence            89999999999999995 689999999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.3e-33  Score=240.51  Aligned_cols=243  Identities=15%  Similarity=0.148  Sum_probs=163.6

Q ss_pred             EEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547           93 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  172 (387)
Q Consensus        93 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  172 (387)
                      ..+.+++.+|++++.|++|++||++++....                                   ...+..+.+|.+.|
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------------------~~~~~~~~gH~~~v  139 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------------------QHVLGGKSGHHNFV  139 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------------------EEEECTTTSCSSCE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------------------eeeecccCCCCCce
Confidence            3344566789999999999999998653211                                   11224567999999


Q ss_pred             EEEEEcc--------CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547          173 EDVTFCP--------SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       173 ~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~  244 (387)
                      ++++|+|        ++ ++|++++.|++|++||++++.  .......|...+.+++|+|.+..+|++++.||.|++||+
T Consensus       140 ~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~  216 (393)
T 4gq1_A          140 NDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW  216 (393)
T ss_dssp             EEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             EEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC
Confidence            9999998        66 899999999999999998776  456667889999999999933468999999999999999


Q ss_pred             ccCCCCCCC-------------------CceEEeccccceEEEEEEc-CCCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547          245 RNLTSNGVG-------------------SPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       245 ~~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~-~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  304 (387)
                      ++.......                   .......+|...+.++.|+ |+++. +++++.|+.+++||+...........
T Consensus       217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~s~d~~i~vwd~~~~~~~~~l~~  295 (393)
T 4gq1_A          217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAMCKSGAWLRWNLFANNDYNEISD  295 (393)
T ss_dssp             TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE-EEEECTTSEEEEEEC-----------
T ss_pred             CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCE-EEEEeCCCCEEEEECccCCCCceEee
Confidence            873211000                   0011123577788899987 78885 57999999999999987433221111


Q ss_pred             CCCC----CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceE
Q 016547          305 RTTN----YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  380 (387)
Q Consensus       305 ~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v  380 (387)
                      ....    ...........+...+..+.+.+.+..+++       +|+.||+|++||+.      +++++..+.+|..+|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------sgs~Dg~V~lwd~~------~~~~~~~~~~~~~~V  362 (393)
T 4gq1_A          296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT-------AHSQHGLIQLINTY------EKDSNSIPIQLGMPI  362 (393)
T ss_dssp             --------CCSCSEEEECSSCCSSCCEECSSCTTEEEE-------EETTTTEEEEEETT------CTTCCEEEEECSSCE
T ss_pred             ecCccccEEEccccccccccCcceeEEEccCCCCEEEE-------EECCCCEEEEEECC------CCcEEEEecCCCCcE
Confidence            0000    000011122223333333334444555665       45566999999999      788888888999999


Q ss_pred             EEeeecC
Q 016547          381 ISCTSKP  387 (387)
Q Consensus       381 ~~~~f~P  387 (387)
                      ++++|||
T Consensus       363 ~svafsp  369 (393)
T 4gq1_A          363 VDFCWHQ  369 (393)
T ss_dssp             EEEEECT
T ss_pred             EEEEEcC
Confidence            9999998

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-33  Score=260.50  Aligned_cols=242  Identities=21%  Similarity=0.345  Sum_probs=193.4

Q ss_pred             EEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (387)
                      ..+.+|.+ .|++++|+|++++|++|+.||.|++||+.+.                                      ..
T Consensus         3 ~~l~gH~~-~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------------------~~   43 (753)
T 3jro_A            3 VIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------TH   43 (753)
T ss_dssp             -----CCC-CEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------------------EE
T ss_pred             eecccCcc-eeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------------------CC
Confidence            45788988 7999999999999999999999999998732                                      12


Q ss_pred             CCceeecCCCCCeEEEEEccC--CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCC--CCeEEEeeC
Q 016547          160 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA  235 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~  235 (387)
                      .....+.+|...|++++|+|+  + .++++|+.||.|++||+++++.........|...|++++|+| +  +.++++|+.
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~  121 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred             ccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeC
Confidence            234667889999999999987  6 899999999999999999876445667778999999999999 7  999999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC-------------CCeeEEEecCCCeEEEEeCCCCCceecc
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQ  302 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~ll~s~~~d~~i~vwd~~~~~~~~~~  302 (387)
                      ||.|++||++...    ......+.+|...|.+++|+|.             +. ++++|+.||.|++||++.....   
T Consensus       122 dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~---  193 (753)
T 3jro_A          122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT---  193 (753)
T ss_dssp             TSEEEEEECCSSS----CCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTE---
T ss_pred             CCcEEEEEeecCC----CcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCccc---
Confidence            9999999999732    2455567789999999999994             66 4679999999999999875322   


Q ss_pred             CCCCCCCCceeeeeeccCCCCeeEEEEccC---CCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCce
Q 016547          303 GPRTTNYPAGLFFQHAGHRDKVVDFHWNAS---DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH  379 (387)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  379 (387)
                              ......+.+|...|++++|+|+   +.+++        +|+.||.|++||+...... ....+.....|...
T Consensus       194 --------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~--------s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~  256 (753)
T 3jro_A          194 --------YVLESTLEGHSDWVRDVAWSPTVLLRSYLA--------SVSQDRTCIIWTQDNEQGP-WKKTLLKEEKFPDV  256 (753)
T ss_dssp             --------EEEEEEECCCSSCEEEEEECCCCSSSEEEE--------EEESSSCEEEEEESSSSSC-CBCCBSSSSCCSSC
T ss_pred             --------ceeeeeecCCCCcEEEEEeccCCCCCCEEE--------EEecCCEEEEecCCCCCCc-ceeEEeccCCCCCc
Confidence                    1345677899999999999999   56555        5666699999999842100 01134455678899


Q ss_pred             EEEeeecC
Q 016547          380 VISCTSKP  387 (387)
Q Consensus       380 v~~~~f~P  387 (387)
                      |++++|+|
T Consensus       257 v~~l~~sp  264 (753)
T 3jro_A          257 LWRASWSL  264 (753)
T ss_dssp             CCCEEECT
T ss_pred             eEEEEEcC
Confidence            99999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=236.33  Aligned_cols=256  Identities=17%  Similarity=0.244  Sum_probs=193.5

Q ss_pred             eeeeecCCCcEEEEEecCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE------E
Q 016547           24 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA------M   95 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~------~   95 (387)
                      .....+|.+.|.+++|+|..  +++|++|+.||.|++||+.+.+           .+...+.+|.. .|.++.      |
T Consensus        58 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~-~v~~~~~~~~~~~  125 (357)
T 3i2n_A           58 LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKE-IINAIDGIGGLGI  125 (357)
T ss_dssp             EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSS-CEEEEEEESGGGC
T ss_pred             ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEeccc-ceEEEeecccccc
Confidence            34456899999999999943  7999999999999999999882           26788889988 689995      5


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCCCc-CccccCCCcccC------------CCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547           96 CPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKS------------AGSSGSIIKQSPKPGDGNDKAADGPSVGPR  162 (387)
Q Consensus        96 ~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (387)
                      +|++++|++++.||.|++||+.++. ............            .......+  .....++.+.+|+....+. 
T Consensus       126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l--~~~~~d~~i~i~d~~~~~~-  202 (357)
T 3i2n_A          126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVV--CAGYDNGDIKLFDLRNMAL-  202 (357)
T ss_dssp             C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEE--EEEETTSEEEEEETTTTEE-
T ss_pred             CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEE--EEEccCCeEEEEECccCce-
Confidence            7899999999999999999998765 222222111100            01111111  1122345677777776665 


Q ss_pred             eeecCCCCCeEEEEEcc---CCCeeEEEecCCCeEEEEEccCCCCcee---EEeeccCCCeeEEEecCCCCC-eEEEeeC
Q 016547          163 GIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCVDWNPLDDN-LILTGSA  235 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~-~l~~~~~  235 (387)
                      .....|...|.+++|+|   ++ ..+++++.||.|++||+++++....   .....|...|++++|+| ++. +|++++.
T Consensus       203 ~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~  280 (357)
T 3i2n_A          203 RWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGG  280 (357)
T ss_dssp             EEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEET
T ss_pred             eeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeC
Confidence            33467889999999999   77 7899999999999999987653211   12348999999999999 777 8999999


Q ss_pred             CCeEEEEEeccCCCCC-------------CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          236 DNSVRMFDRRNLTSNG-------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ||.|++||++......             ..+.+..+..|...|.+++|+|++++++++++.||.|++||+.+.
T Consensus       281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            9999999998643210             014677888999999999999999976558999999999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.2e-30  Score=224.95  Aligned_cols=258  Identities=12%  Similarity=0.109  Sum_probs=198.6

Q ss_pred             eeecCCCcEEEEEecCCCCcE-EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-
Q 016547           26 KTIIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-  103 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-  103 (387)
                      ..+.+...+.+++|+| ++++ +++++.|++|++||+.++            +....+..+.  .+.+++|+|++++|+ 
T Consensus        26 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~------------~~~~~~~~~~--~v~~~~~spdg~~l~~   90 (391)
T 1l0q_A           26 ATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGS--SPQGVAVSPDGKQVYV   90 (391)
T ss_dssp             EEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSS--SEEEEEECTTSSEEEE
T ss_pred             EEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCC------------eEEEEEECCC--CccceEECCCCCEEEE
Confidence            3344556699999999 6655 578889999999999888            5666666665  589999999999875 


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +++.++.|++||+.++..                                        +..+.. ...+.+++|+|++..
T Consensus        91 ~~~~~~~v~v~d~~~~~~----------------------------------------~~~~~~-~~~~~~~~~s~dg~~  129 (391)
T 1l0q_A           91 TNMASSTLSVIDTTSNTV----------------------------------------AGTVKT-GKSPLGLALSPDGKK  129 (391)
T ss_dssp             EETTTTEEEEEETTTTEE----------------------------------------EEEEEC-SSSEEEEEECTTSSE
T ss_pred             EECCCCEEEEEECCCCeE----------------------------------------EEEEeC-CCCcceEEECCCCCE
Confidence            555779999999986432                                        122333 346899999999955


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      ++++++.++.|++||+++++  ....+.. ...+.+++|+| +++++ ++++.++.|++||+++      ++.+..+. +
T Consensus       130 l~~~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~-~  198 (391)
T 1l0q_A          130 LYVTNNGDKTVSVINTVTKA--VINTVSV-GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVK-V  198 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTE--EEEEEEC-CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEE-C
T ss_pred             EEEEeCCCCEEEEEECCCCc--EEEEEec-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CeEEEEEe-c
Confidence            55889999999999998876  4445444 45679999999 88776 6778899999999998      66666665 5


Q ss_pred             cceEEEEEEcCCCCeeEEEec--CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          263 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ...+.+++|+|+++++++++.  .++.|++||+...               ..+..+..|. .+.+++|+|+++++++++
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIPVGP-DPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---------------eEEEEEecCC-CccEEEEccCCCEEEEEc
Confidence            668899999999998765554  6899999999874               2334444443 578999999999997755


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCce
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH  379 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  379 (387)
                      +       .|+.|++||+.      +++++..+..|..+
T Consensus       263 ~-------~d~~v~v~d~~------~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          263 S-------FXNTVSVIDTA------TNTITATMAVGKNP  288 (391)
T ss_dssp             T-------TTTEEEEEETT------TTEEEEEEECSSSE
T ss_pred             C-------CCCEEEEEECC------CCcEEEEEECCcCC
Confidence            4       45999999999      67777777666554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=230.71  Aligned_cols=236  Identities=14%  Similarity=0.201  Sum_probs=187.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEE--CCCCCEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM--CPTEPYV  102 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~--~~~~~~l  102 (387)
                      ....+|.+.|++++|+| ++++|++|+.||.|++||+.++            +.. .+.+|.. .|.+++|  ++++++|
T Consensus        80 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~------------~~~-~~~~~~~-~v~~~~~~~~~~~~~l  144 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSN------------QAI-QIAQHDA-PVKTIHWIKAPNYSCV  144 (368)
T ss_dssp             EEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEE-EEEECSS-CEEEEEEEECSSCEEE
T ss_pred             EEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCC------------Cce-eeccccC-ceEEEEEEeCCCCCEE
Confidence            45567999999999999 8899999999999999999987            333 3566776 7999999  9999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.||.|++||++++..                                        +..+..+ ..+.++.+.++  
T Consensus       145 ~~~~~dg~i~vwd~~~~~~----------------------------------------~~~~~~~-~~~~~~~~~~~--  181 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNP----------------------------------------MMVLQLP-ERCYCADVIYP--  181 (368)
T ss_dssp             EEEETTSEEEEECSSCSSC----------------------------------------SEEEECS-SCEEEEEEETT--
T ss_pred             EEccCCCcEEEEECCCCcE----------------------------------------EEEEecC-CCceEEEecCC--
Confidence            9999999999999976432                                        2344444 35667777643  


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCe----EEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL----ILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                       .+++++.++.+.+||++............+...+.++++.+ ....    +++++.||.|++||++....   ...+..
T Consensus       182 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~~~~~  256 (368)
T 3mmy_A          182 -MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP---AKDNFT  256 (368)
T ss_dssp             -EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH---HHHSEE
T ss_pred             -eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc---ccccee
Confidence             57788889999999998876433333334555667777766 5544    99999999999999997310   156777


Q ss_pred             eccccc------------eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          259 FEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       259 ~~~~~~------------~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                      +..|..            .|.+++|+|++++ |++++.||.|++||++..               ..+..+.+|...|++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~  320 (368)
T 3mmy_A          257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDAR---------------TKLKTSEQLDQPISA  320 (368)
T ss_dssp             EECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSCEEE
T ss_pred             eeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCC---------------cEEEEecCCCCCceE
Confidence            777776            7999999999985 679999999999999875               456677889999999


Q ss_pred             EEEccCCCeEEEE
Q 016547          327 FHWNASDPWTVVS  339 (387)
Q Consensus       327 ~~~~~~~~~l~~s  339 (387)
                      ++|+|++.+|+++
T Consensus       321 ~~~s~~g~~l~~~  333 (368)
T 3mmy_A          321 CCFNHNGNIFAYA  333 (368)
T ss_dssp             EEECTTSSCEEEE
T ss_pred             EEECCCCCeEEEE
Confidence            9999999988743

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.2e-30  Score=223.98  Aligned_cols=250  Identities=13%  Similarity=0.141  Sum_probs=197.4

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~  122 (387)
                      +.++++++.|+.|++||+.++            +....+..|..  +.+++|+|+++++ ++++.|+.|++||+.+++. 
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~------------~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-   66 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-   66 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred             CEEEEEcCCCCEEEEEECCCC------------eEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence            357889999999999999988            66777777764  7899999999987 6777899999999976432 


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  202 (387)
                                                             +..+..+. .+.+++|+|++..++++++.++.|++||+.++
T Consensus        67 ---------------------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           67 ---------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             ---------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ---------------------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence                                                   23333333 89999999999555677778899999999987


Q ss_pred             CCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547          203 TSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                      +  ....+. +...+.+++|+| +++.+ ++++.|+.|++||+++      ++.+..+..+ ..+.+++|+|++++++++
T Consensus       107 ~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          107 T--VAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             E--EEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred             e--EEEEEe-CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEE
Confidence            7  444444 456789999999 88866 6888899999999998      7777777755 456999999999988788


Q ss_pred             ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ++.++.|++||++...               ....+ .+...+.+++|+|++++++++..+     ..|+.|++||+.  
T Consensus       176 ~~~~~~v~~~d~~~~~---------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-----~~~~~v~~~d~~--  232 (391)
T 1l0q_A          176 NFDSMSISVIDTVTNS---------------VIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-----KYFNTVSMIDTG--  232 (391)
T ss_dssp             ETTTTEEEEEETTTTE---------------EEEEE-ECSSEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEETT--
T ss_pred             eCCCCEEEEEECCCCe---------------EEEEE-ecCCCccceEECCCCCEEEEEecC-----cCCCcEEEEECC--
Confidence            8999999999998742               22222 355688999999999988865431     145999999999  


Q ss_pred             cccccchhhhhhhccCceEEEeeecC
Q 016547          362 IYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +++++..+..|. .+.+++|+|
T Consensus       233 ----~~~~~~~~~~~~-~~~~~~~s~  253 (391)
T 1l0q_A          233 ----TNKITARIPVGP-DPAGIAVTP  253 (391)
T ss_dssp             ----TTEEEEEEECCS-SEEEEEECT
T ss_pred             ----CCeEEEEEecCC-CccEEEEcc
Confidence                677777777654 468888886

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.6e-30  Score=211.19  Aligned_cols=253  Identities=14%  Similarity=0.173  Sum_probs=169.2

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEE-EEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVL-IWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      .+.+...+|..+|..+.+.|+..+++..+-..=.+. ++-+--.+...      .......-.+|.. .|..+   ++++
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~------~~~~~l~s~g~~~-~v~~l---~~g~  146 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDE------SEKQVLLKSGNIK-AVLGL---TKRR  146 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------------CCEEEEEEEEEE-EEEEE---TTTE
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCcc------ccccEEEeCCCeE-EEEec---CCCc
Confidence            455667789999999999996666665553322221 22221111000      0011112233332 23333   4555


Q ss_pred             EEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          101 YVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       101 ~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      .+.+++  .|+.|++|++..                                       .++.+..+..|...++.++|+
T Consensus       147 lv~ss~~g~d~~V~~~~~s~---------------------------------------dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          147 LVSSSGTLSDQQVEVMTFAE---------------------------------------DGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             EEEEESSSTTCEEEEEEECT---------------------------------------TSCEEEEEEECCCSSCEEEEE
T ss_pred             EEEecccCCCCcEEEEEECC---------------------------------------CCceeeeeccCCCceeeEEee
Confidence            555533  577777777742                                       233445667888889999999


Q ss_pred             c---CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC---CCeeEEEecCCCCCeE------------EEeeCCCeEE
Q 016547          179 P---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLI------------LTGSADNSVR  240 (387)
Q Consensus       179 ~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l------------~~~~~dg~i~  240 (387)
                      +   ++ .+|++++.|++|++||+++++  .+..+.+|.   ..+.+++|+| ++.++            ++|+.|++|+
T Consensus       188 ~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          188 EVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EEETST-TEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEE
T ss_pred             ccCCCC-ceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEE
Confidence            8   55 789999999999999999998  667776544   3577789999 88876            5688899999


Q ss_pred             EEEeccCCCCCCCCceEEe-----ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          241 MFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      +||..+      ++.+..+     .+|...+.+..++  +. ++|+++.|++|+|||+.++               +++.
T Consensus       264 lWd~~t------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tG---------------k~l~  319 (356)
T 2w18_A          264 VINPKT------TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLG---------------QCTA  319 (356)
T ss_dssp             EEETTT------TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---------------SEEE
T ss_pred             EEECCC------CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCC---------------cEEE
Confidence            999988      7766554     3565555544444  55 5789999999999999986               4567


Q ss_pred             eeccCCCCee-EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          316 QHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       316 ~~~~~~~~v~-~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++.+|...+. .++|+|++++|+        +|+.|++|+|||+.
T Consensus       320 tL~gH~~~vvs~vafSPDG~~La--------SGS~D~TIklWd~~  356 (356)
T 2w18_A          320 LLPPVSDQHWSFVKWSGTDSHLL--------AGQKDGNIFVYHYS  356 (356)
T ss_dssp             EECCC--CCCCEEEECSSSSEEE--------EECTTSCEEEEEEC
T ss_pred             EecCCCCCeEEEEEECCCCCEEE--------EEECCCcEEEecCC
Confidence            7788887665 589999999887        78888999999963

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-30  Score=220.58  Aligned_cols=243  Identities=10%  Similarity=0.054  Sum_probs=172.9

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECC--CCCEEEEecC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCP--TEPYVLSGGK  107 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~--~~~~l~s~~~  107 (387)
                      .+.|.++.|+| .   +++|+.|++|++|+.........   ....+.+..+. +|.+ .|.+++|+|  +++++++++.
T Consensus        76 ~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s~  147 (343)
T 3lrv_A           76 TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILD---SKTNKVLREIEVDSAN-EIIYMYGHNEVNTEYFIWADN  147 (343)
T ss_dssp             EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEE---TTTCCEEEEEECCCSS-CEEEEECCC---CCEEEEEET
T ss_pred             cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEee---cCCcceeEEeecCCCC-CEEEEEcCCCCCCCEEEEEeC
Confidence            45677788888 4   99999999999998764311000   00113233343 5555 799999999  9999999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEccCCCeeEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      ||+|++||++++...                                        ... ..|...|.+++|+|++ .+|+
T Consensus       148 dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~~i~~~~~~pdg-~~la  186 (343)
T 3lrv_A          148 RGTIGFQSYEDDSQY----------------------------------------IVHSAKSDVEYSSGVLHKDS-LLLA  186 (343)
T ss_dssp             TCCEEEEESSSSCEE----------------------------------------EEECCCSSCCCCEEEECTTS-CEEE
T ss_pred             CCcEEEEECCCCcEE----------------------------------------EEEecCCCCceEEEEECCCC-CEEE
Confidence            999999999864321                                        222 2355679999999998 8999


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---c
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H  262 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~  262 (387)
                      +|+.||.|++||+++++.. ...+.. |...|++++|+| ++.+|++++ |+.|++||+++      .+.+..+..   |
T Consensus       187 sg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~~~~~~~~~~~~~  257 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------DVGTLAYPTYTIP  257 (343)
T ss_dssp             EECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------STTCBSSCCCBC-
T ss_pred             EEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------CCcceeecccccc
Confidence            9999999999999988732 145566 999999999999 999999999 55999999998      555444332   3


Q ss_pred             cceEE--EEEEcCCCCeeEEEecC-CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc---CCCeE
Q 016547          263 SAAVL--CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA---SDPWT  336 (387)
Q Consensus       263 ~~~i~--~~~~~~~~~~ll~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l  336 (387)
                      ...+.  +++|+|+++++ ++++. |+.|++|++....+..               ..    .++..++|.+   +...+
T Consensus       258 ~~~~~~~~~~~~~~g~~l-~~~s~~d~~i~v~~~~~~~~~~---------------~~----~~~~~~~~~~~~~~~~~l  317 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGKNM-IAYSNESNSLTIYKFDKKTKNW---------------TK----DEESALCLQSDTADFTDM  317 (343)
T ss_dssp             ----CCEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCSE---------------EE----EEEEECCC----CCCCEE
T ss_pred             cccccceEEEECCCCCEE-EEecCCCCcEEEEEEcccccce---------------Ee----cCceeEecCcccccccee
Confidence            34444  69999999975 56666 9999999997643211               00    4567777877   66666


Q ss_pred             EEEecCCCCCCCCCceEEEEecC
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +        +++.||.+.++-..
T Consensus       318 ~--------~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          318 D--------VVCGDGGIAAILKT  332 (343)
T ss_dssp             E--------EEEETTEEEEEEEC
T ss_pred             E--------EEecCCceEEEEec
Confidence            6        34445788877654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=1.9e-29  Score=219.86  Aligned_cols=268  Identities=11%  Similarity=0.071  Sum_probs=200.7

Q ss_pred             eeeecCCCcEEEEEecCC-------------CCcEEEEecCC------CcEEEEeccCCCCcccccCCCCCCCeEEEecc
Q 016547           25 HKTIIHPGEVNRIRELPQ-------------NTKIVATHTDS------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH   85 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~-------------~~~~l~t~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h   85 (387)
                      ..+.+|...+..+++.+.             .+..++.++.+      ++|++||++..             ....+.+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~  177 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRS  177 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCC
Confidence            456678888888776641             14455555443      79999999754             34667778


Q ss_pred             CCCceEEEEECCCCCEEEEecCCC---eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547           86 QDNAEFALAMCPTEPYVLSGGKDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  162 (387)
Q Consensus        86 ~~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (387)
                      .. .|.+++|+|+|++|++++.|+   .|++||+.++..                                         
T Consensus       178 ~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----------------------------------------  215 (415)
T 2hqs_A          178 PQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----------------------------------------  215 (415)
T ss_dssp             SS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------------------------------
T ss_pred             CC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------------------------------
Confidence            76 689999999999999999875   999999976432                                         


Q ss_pred             eeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC--
Q 016547          163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--  237 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--  237 (387)
                      ..+..|...+.+++|+|++..++++++.++.  |++||+++++   ...+..|...+.+++|+| ++++|++++. ++  
T Consensus       216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred             EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECC-CCCEEEEEECCCCCc
Confidence            3455677789999999999444447776655  9999998876   356667888999999999 9998888876 45  


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      .|.+||+.+      ++ ...+..+...+.+++|+|+|++|++++..  +..|++||+.....                .
T Consensus       292 ~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----------------~  348 (415)
T 2hqs_A          292 QVYKVNING------GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------------Q  348 (415)
T ss_dssp             EEEEEETTS------SC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----------------E
T ss_pred             EEEEEECCC------CC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----------------E
Confidence            566777775      43 34555577789999999999976544444  35899999987421                2


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .+..+. .+.+++|+|++++++.+..++     ....|++||+.       +..+..+..|.+.|.+++|+|
T Consensus       349 ~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~l~~~d~~-------g~~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          349 VLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             ECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-------SCCEEECCCSSSEEEEEEECC
T ss_pred             EecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccEEEEEECC-------CCcEEEeeCCCCCCcCCcccc
Confidence            234443 889999999999887544332     11289999987       556778899999999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9.9e-30  Score=217.34  Aligned_cols=213  Identities=11%  Similarity=0.131  Sum_probs=151.3

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      .++..+..|.. .|++++|+|+|++|++|+.++ +++|++++....                                  
T Consensus        10 ~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~----------------------------------   53 (355)
T 3vu4_A           10 NPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI----------------------------------   53 (355)
T ss_dssp             ---------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE----------------------------------
T ss_pred             CCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCccee----------------------------------
Confidence            45556778877 799999999999999998664 789998753221                                  


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCC---------
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD---------  227 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------  227 (387)
                              ...+...+..+++.++++.++++++.|+.|++||..+++  .+..+. +...|.++++++ +.         
T Consensus        54 --------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~-~~~~~~~~~~i  121 (355)
T 3vu4_A           54 --------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSR-EFIVVSYGDVI  121 (355)
T ss_dssp             --------EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEEEEE-CSSCEEEEEECS-SEEEEEETTEE
T ss_pred             --------eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEEEEE-CCCceEEEEEcC-CEEEEEEcCEE
Confidence                    111222467788888774555778888999999998876  344443 566788888776 31         


Q ss_pred             --------------------------CeEEE--eeCCCeEEEEEeccCCCC---------CCCCc-eEEeccccceEEEE
Q 016547          228 --------------------------NLILT--GSADNSVRMFDRRNLTSN---------GVGSP-INKFEGHSAAVLCV  269 (387)
Q Consensus       228 --------------------------~~l~~--~~~dg~i~~~d~~~~~~~---------~~~~~-~~~~~~~~~~i~~~  269 (387)
                                                .++++  |+.||.|++||+++....         ....+ +..+.+|...|.++
T Consensus       122 ~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~  201 (355)
T 3vu4_A          122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV  201 (355)
T ss_dssp             EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred             EEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence                                      23343  567888888888762100         00012 78889999999999


Q ss_pred             EEcCCCCeeEEEecCCCe-EEEEeCCCCCceeccCCCCCCCCceeeeeec-c-CCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          270 QWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G-HRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       270 ~~~~~~~~ll~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      +|+|++++ |++++.|+. |++||+++.               ..+..+. + |...|++++|+|++++++        +
T Consensus       202 ~~s~~g~~-l~s~s~d~~~v~iwd~~~~---------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~--------s  257 (355)
T 3vu4_A          202 RLNRKSDM-VATCSQDGTIIRVFKTEDG---------------VLVREFRRGLDRADVVDMKWSTDGSKLA--------V  257 (355)
T ss_dssp             EECTTSSE-EEEEETTCSEEEEEETTTC---------------CEEEEEECTTCCSCEEEEEECTTSCEEE--------E
T ss_pred             EECCCCCE-EEEEeCCCCEEEEEECCCC---------------cEEEEEEcCCCCCcEEEEEECCCCCEEE--------E
Confidence            99999985 689999998 999999975               3355555 5 999999999999999877        6


Q ss_pred             CCCCceEEEEecCCC
Q 016547          347 TGGGGTLQIWRMSDL  361 (387)
Q Consensus       347 g~~dg~i~iw~~~~~  361 (387)
                      |+.|++|++||+...
T Consensus       258 ~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          258 VSDKWTLHVFEIFND  272 (355)
T ss_dssp             EETTCEEEEEESSCC
T ss_pred             EECCCEEEEEEccCC
Confidence            677799999999853

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=9.9e-29  Score=217.54  Aligned_cols=242  Identities=10%  Similarity=0.079  Sum_probs=190.7

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-Eec
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG  106 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~  106 (387)
                      .+|.+.|.+++|++ +++++++++.|+.|++||++++            +....+..|.. .+.+++|+|++++++ +++
T Consensus       166 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~  231 (433)
T 3bws_A          166 KKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL------------AYKATVDLTGK-WSKILLYDPIRDLVYCSNW  231 (433)
T ss_dssp             HTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC------------CEEEEEECSSS-SEEEEEEETTTTEEEEEET
T ss_pred             cccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc------------eEEEEEcCCCC-CeeEEEEcCCCCEEEEEec
Confidence            37889999999988 8899999999999999999887            66777777776 689999999999885 555


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .|+.|++||+.++...                                        ..+.. ...+.+++|+|++ ..++
T Consensus       232 ~~~~i~~~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~~~~g-~~l~  269 (433)
T 3bws_A          232 ISEDISVIDRKTKLEI----------------------------------------RKTDK-IGLPRGLLLSKDG-KELY  269 (433)
T ss_dssp             TTTEEEEEETTTTEEE----------------------------------------EECCC-CSEEEEEEECTTS-SEEE
T ss_pred             CCCcEEEEECCCCcEE----------------------------------------EEecC-CCCceEEEEcCCC-CEEE
Confidence            8999999999754321                                        22222 3458999999998 6677


Q ss_pred             Eec--------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          187 SVG--------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       187 ~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      +++        .|+.|++||+++++  .... ..+...+.+++|+| +++ ++++++.|+.|++||+.+      ++.+.
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~------~~~~~  339 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEK--LIDT-IGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKE------KKVQK  339 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTE--EEEE-EEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTT------TEEEE
T ss_pred             EEECCCCccccCCCeEEEEECCCCc--EEee-ccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCC------CcEEE
Confidence            666        58899999998876  3333 34566889999999 775 556778999999999997      77777


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecC--------------CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAE--------------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~--------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                      .+. +...+.+++|+|+++++++++..              ||.|++||+.+.               ..+..+.. ...
T Consensus       340 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~~~~~~~~-~~~  402 (433)
T 3bws_A          340 SIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------TVKEFWEA-GNQ  402 (433)
T ss_dssp             EEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------EEEEEEEC-SSS
T ss_pred             Eec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------------cEEEEecC-CCC
Confidence            776 67789999999999976544433              579999999874               22333333 457


Q ss_pred             eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.+++|+|++++++++++.       |+.|++|+++
T Consensus       403 ~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~  431 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFL-------DHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECTTSCEEEEEETT-------TTEEEEEEET
T ss_pred             CceEEEcCCCCEEEEEECC-------CCeEEEEEec
Confidence            8999999999998864443       5999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.5e-30  Score=227.66  Aligned_cols=259  Identities=17%  Similarity=0.298  Sum_probs=199.7

Q ss_pred             eccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc--CCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           83 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        83 ~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      .+|.. .|.++.+  ++++|++|+.||.|++||+.++............  .......  .......++.+.+|+..+.+
T Consensus       130 ~~~~~-~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          130 SETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CSSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS--EEEEEETTSCEEEEESSSCC
T ss_pred             cCCCC-cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCC--EEEEEcCCCeEEEEECCCCc
Confidence            34444 5777777  8999999999999999999887554333221110  0000111  12223456788889988889


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  239 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  239 (387)
                      .+..+.+|...|.+++|++   ..+++|+.||.|++||++++... ......+|...|.++++   +++++++|+.||.|
T Consensus       205 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i  278 (435)
T 1p22_A          205 MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTI  278 (435)
T ss_dssp             EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEE
T ss_pred             EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeE
Confidence            9999999999999999974   47999999999999999887632 22566789999999998   56899999999999


Q ss_pred             EEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      ++||+++      ++.+..+.+|...|.+++|+  +. ++++|+.||.|++||+++.               ..+..+.+
T Consensus       279 ~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~---------------~~~~~~~~  334 (435)
T 1p22_A          279 KVWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEG  334 (435)
T ss_dssp             EEEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---------------CEEEEECC
T ss_pred             EEEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC---------------CEEEEEeC
Confidence            9999998      88999999999999999995  44 5679999999999999875               34667788


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCccc---ccchhhhhhhccCceEEEeeec
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      |...|.+++|  ++.+++        +|+.||.|++||+......   ....++..+.+|.+.|.+++|.
T Consensus       335 h~~~v~~~~~--~~~~l~--------sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  394 (435)
T 1p22_A          335 HEELVRCIRF--DNKRIV--------SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD  394 (435)
T ss_dssp             CSSCEEEEEC--CSSEEE--------EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred             CcCcEEEEEe--cCCEEE--------EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC
Confidence            9999999999  566666        6667799999999731100   0111677888999999999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.9e-29  Score=206.19  Aligned_cols=197  Identities=12%  Similarity=0.114  Sum_probs=144.3

Q ss_pred             CCCcEEEEEecCCC----CcEEEEecC--------------------CCcEEEEeccC-CCCcccccCCCCCCCeEEEec
Q 016547           30 HPGEVNRIRELPQN----TKIVATHTD--------------------SPDVLIWDVEA-QPNRHAVLGATNSRPDLILTG   84 (387)
Q Consensus        30 h~~~v~~i~~~~~~----~~~l~t~~~--------------------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~   84 (387)
                      |.+.|++++|+| +    ++++++++.                    |+.|++|++.. +            +.+..+.+
T Consensus       110 ~~~~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG------------~~~~s~~~  176 (356)
T 2w18_A          110 EIREIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG------------GGKENQFL  176 (356)
T ss_dssp             SEEEEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS------------CEEEEEEE
T ss_pred             cccceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC------------ceeeeecc
Confidence            456788888888 6    666666553                    66677777633 3            55667778


Q ss_pred             cCCCceEEEEECC---CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           85 HQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        85 h~~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      |.. .++.++|++   ++.+|++++.|++|++||+++++..                                       
T Consensus       177 ~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l---------------------------------------  216 (356)
T 2w18_A          177 MPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL---------------------------------------  216 (356)
T ss_dssp             CCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE---------------------------------------
T ss_pred             CCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE---------------------------------------
Confidence            876 578899998   7799999999999999999875432                                       


Q ss_pred             ceeecCC---CCCeEEEEEccCCCeeE------------EEecCCCeEEEEEccCCCCceeEEe-----eccCCCeeEEE
Q 016547          162 RGIYNGH---EDTVEDVTFCPSSAQEF------------CSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVD  221 (387)
Q Consensus       162 ~~~~~~~---~~~v~~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~  221 (387)
                       ..+.+|   ...+.+++|+|++ .++            ++|+.|++|++||..+++  .+..+     .+|...+.+. 
T Consensus       217 -~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg-  291 (356)
T 2w18_A          217 -KKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFLEG-  291 (356)
T ss_dssp             -EEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEEEE-
T ss_pred             -EEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeEcc-
Confidence             444443   3467788999998 554            678899999999998876  33332     2555554433 


Q ss_pred             ecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE-EEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547          222 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIWDY  293 (387)
Q Consensus       222 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ll~s~~~d~~i~vwd~  293 (387)
                       +. ++.++++++.|++|+|||+.+      ++++.++.+|...+. .++|+|+|++ |++|+.|++|+|||+
T Consensus       292 -~~-sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~  355 (356)
T 2w18_A          292 -DV-KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -EE-ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred             -cc-CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence             33 477899999999999999999      999999999887655 5899999996 679999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.8e-27  Score=207.33  Aligned_cols=263  Identities=10%  Similarity=0.037  Sum_probs=194.9

Q ss_pred             CCCcEEEEEecCCCCcEEEEec----CCC----cEEEEec--cCCCCcccccCCCCCCCe--EEEeccCCCceEEEEECC
Q 016547           30 HPGEVNRIRELPQNTKIVATHT----DSP----DVLIWDV--EAQPNRHAVLGATNSRPD--LILTGHQDNAEFALAMCP   97 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~--~~~~~h~~~~v~~~~~~~   97 (387)
                      +.+.+...+|.+.+.+++++|+    .||    +|++||+  .++            +.+  ..+.+|.. .+..+++++
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~  127 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG------------TVLAQNSYKVNKQ-WLRYAGHTA  127 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT------------CEEEEEEEEECGG-GHHHHHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC------------CEEeeeEEEcChh-HHHHHHHHH
Confidence            3457888888887778888886    568    8999999  777            444  45777776 456666654


Q ss_pred             --------------CCCEEEEecCC------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           98 --------------TEPYVLSGGKD------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        98 --------------~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                                    .+..++.++.+      +.|++||++..                                      
T Consensus       128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------------------------------------  169 (415)
T 2hqs_A          128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY--------------------------------------  169 (415)
T ss_dssp             HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC--------------------------------------
T ss_pred             HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC--------------------------------------
Confidence                          25566665543      79999998632                                      


Q ss_pred             CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC---eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE-Ee
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TG  233 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~  233 (387)
                         ....+..|...+.+++|+|++ +.|++++.++   .|++||+++++   ...+..|...+.+++|+| ++++|+ ++
T Consensus       170 ---~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~---~~~l~~~~~~~~~~~~sp-dg~~la~~~  241 (415)
T 2hqs_A          170 ---NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA---VRQVASFPRHNGAPAFSP-DGSKLAFAL  241 (415)
T ss_dssp             ---SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC---EEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ---CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc---EEEeecCCCcccCEEEcC-CCCEEEEEE
Confidence               125566788899999999999 7788887775   99999999887   234566788999999999 998777 66


Q ss_pred             eCCCe--EEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCC
Q 016547          234 SADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNY  309 (387)
Q Consensus       234 ~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~  309 (387)
                      +.++.  |++||+.+      ++. ..+..|...+.+++|+|+|++|++++..++  .|.+||+....            
T Consensus       242 ~~~g~~~i~~~d~~~------~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------------  302 (415)
T 2hqs_A          242 SKTGSLNLYVMDLAS------GQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------  302 (415)
T ss_dssp             CTTSSCEEEEEETTT------CCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------
T ss_pred             ecCCCceEEEEECCC------CCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------------
Confidence            66654  89999886      443 667778889999999999997664554455  67777887642            


Q ss_pred             CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          ...+..+...+.+++|+|+|++++++..++     .++.|++||+.      +++. ..+..+. .+.+++|+|
T Consensus       303 ----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~------~~~~-~~l~~~~-~~~~~~~sp  363 (415)
T 2hqs_A          303 ----PQRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLA------TGGV-QVLSSTF-LDETPSLAP  363 (415)
T ss_dssp             ----CEECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETT------TCCE-EECCCSS-SCEEEEECT
T ss_pred             ----EEEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECC------CCCE-EEecCCC-CcCCeEEcC
Confidence                122344667889999999999888655432     24799999998      4544 3455554 888999987

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.3e-25  Score=201.38  Aligned_cols=282  Identities=10%  Similarity=0.090  Sum_probs=202.8

Q ss_pred             EEEEEecCCCCcEEEEecCCCcEEEEec--cCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC----CCCEEEEecC
Q 016547           34 VNRIRELPQNTKIVATHTDSPDVLIWDV--EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP----TEPYVLSGGK  107 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~----~~~~l~s~~~  107 (387)
                      +.+++|+| ++++|++++.|++|.+||+  .+.            +.+..+..+.  .+..++|+|    +|++|++++.
T Consensus       181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~------------~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP------------TKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------EEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEE
T ss_pred             cceEEECC-CCCEEEEECCCCeEEEEECcCCCC------------cEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEc
Confidence            89999999 8999999999999999999  665            5566666443  468999999    9999998884


Q ss_pred             -CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCCeeE
Q 016547          108 -DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       108 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l  185 (387)
                       +++|.+||..+............                              .......| ...+..+.++|+++.++
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~------------------------------~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGM------------------------------TVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEE------------------------------CSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             cCCeEEEEeccccccceeecccCc------------------------------ccCccccccCCceEEEEECCCCCEEE
Confidence             89999999876543221110000                              00000012 23789999999887888


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEecc---
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEG---  261 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~---  261 (387)
                      ++...++.|.+||..+.+......+ .+...+..+.|+| ++++|++++ .++.|.+||..+      ++.+..+..   
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t------g~l~~~i~~g~~  367 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD------RRLSALVDVGKT  367 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEEEEEECSSS
T ss_pred             EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC------CeEEEeeccCCC
Confidence            9999999999999988764332233 4667789999999 888766554 589999999998      777777763   


Q ss_pred             -ccceEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          262 -HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       262 -~~~~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                       |.+....+ ++|++..+++++. .|++|.+||+...+.+        ....+++..+.+|...+..++++|++++|.+.
T Consensus       368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP--------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--------TTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc--------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence             54333333 5787555777875 6899999999873211        01135678888898899999999999998853


Q ss_pred             ecCCCCCCC---CCceEEEEecCCCcccccchhh-hh--------hhccCceEEEeeecC
Q 016547          340 VSDDCDSTG---GGGTLQIWRMSDLIYRPQDEVL-AE--------LEKFKAHVISCTSKP  387 (387)
Q Consensus       340 ~s~d~~tg~---~dg~i~iw~~~~~~~~~~~~~~-~~--------~~~~~~~v~~~~f~P  387 (387)
                      .-.    +.   .+++|.+||+.+      ++.. ..        +..+...+..++|+|
T Consensus       439 ~~~----~~~~~~~~~v~v~d~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  488 (543)
T 1nir_A          439 TTF----NPDARISQSVAVFDLKN------LDAKYQVLPIAEWADLGEGAKRVVQPEYNK  488 (543)
T ss_dssp             CTT----CSSHHHHTCEEEEETTC------TTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred             cCC----CCCcccCceEEEEECCC------CCCCeEEeechhhcccCCCCCceEeccCCC
Confidence            200    00   257999999994      4433 22        245678899999987

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=2.4e-25  Score=185.53  Aligned_cols=244  Identities=11%  Similarity=0.079  Sum_probs=181.3

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccC-CCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+..|.+.|.+++|+| ++++|++++ ++.|++||+.+ +            +.......+....+.+++|+|++++|+
T Consensus        35 ~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~l~  100 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDP------------SPEKVDTGFATICNNDHGISPDGALYA  100 (297)
T ss_dssp             EEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCC------------SCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred             eeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCC------------CceEeccccccccccceEECCCCCEEE
Confidence            35567899999999999 888888876 78999999998 6            444445566444688999999999999


Q ss_pred             Eec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          104 SGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       104 s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++  .++...+|.++....                                       ....+..+ ..+..++|+|++
T Consensus       101 ~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~~~~~-~~~~~~~~spdg  140 (297)
T 2ojh_A          101 ISDKVEFGKSAIYLLPSTGG---------------------------------------TPRLMTKN-LPSYWHGWSPDG  140 (297)
T ss_dssp             EEECTTTSSCEEEEEETTCC---------------------------------------CCEECCSS-SSEEEEEECTTS
T ss_pred             EEEeCCCCcceEEEEECCCC---------------------------------------ceEEeecC-CCccceEECCCC
Confidence            988  445666666542100                                       01222222 348889999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEec
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      ..++++++.++.+++|+++.... ....+..+...+.+++|+| ++++|+.++ .++.+++|++...     ...+..+.
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~~~~  213 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVERIT  213 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEEECC
T ss_pred             CEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcEEEe
Confidence            55555888999999999754332 2455666788899999999 888777666 5899999999732     56677788


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCC-----------CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAED-----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  329 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d-----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (387)
                      .|...+..++|+|++++|+ .++.+           +.|.+||+.....             ..+..+.+|...+..++|
T Consensus       214 ~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~  279 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGGNV-------------ETLFDLFGGQGTMNSPNW  279 (297)
T ss_dssp             CCSEEEEEEEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSCSC-------------EEEEEEEESTTTSCSCCB
T ss_pred             cCCcccCCeEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCCCCc-------------eeeeccCCCCcccccceE
Confidence            8888999999999999765 44433           5699999987422             234445578889999999


Q ss_pred             ccCCCeEEEEecCC
Q 016547          330 NASDPWTVVSVSDD  343 (387)
Q Consensus       330 ~~~~~~l~~s~s~d  343 (387)
                      +|+++++++++.++
T Consensus       280 spdg~~l~~~~~~~  293 (297)
T 2ojh_A          280 SPDGDEFAYVRYFP  293 (297)
T ss_dssp             CTTSSEEEEEEECC
T ss_pred             CCCCCEEEEEEecc
Confidence            99999888765544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.4e-25  Score=199.74  Aligned_cols=262  Identities=9%  Similarity=0.052  Sum_probs=193.0

Q ss_pred             EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEc-
Q 016547           38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI-  116 (387)
Q Consensus        38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~-  116 (387)
                      +++| ++.++++++.|++|.+||..++            +.+..+..+..  +..++|+|+|++|++++.|++|.+||+ 
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~  208 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW  208 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTC------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCc------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence            3677 7789999999999999999988            66677774433  789999999999999999999999999 


Q ss_pred             -CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc----CCCeeEEEec-C
Q 016547          117 -QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP----SSAQEFCSVG-D  190 (387)
Q Consensus       117 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~-~  190 (387)
                       .+..                                        .+..+. +...+..++|+|    ++ +++++++ .
T Consensus       209 ~~t~~----------------------------------------~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~  246 (543)
T 1nir_A          209 AKEPT----------------------------------------KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYW  246 (543)
T ss_dssp             SSSCE----------------------------------------EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEE
T ss_pred             CCCCc----------------------------------------EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEcc
Confidence             4322                                        123333 345679999999    98 6666666 5


Q ss_pred             CCeEEEEEccCCCCceeEEeec----------c-CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE--
Q 016547          191 DSCLILWDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN--  257 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--  257 (387)
                      ++.|.+||..+.+  .+..+..          | ...+..+.++|....++++...++.|.+||..+      .+.+.  
T Consensus       247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~------~~~l~~~  318 (543)
T 1nir_A          247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD------IDNLTVT  318 (543)
T ss_dssp             SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT------SSSCEEE
T ss_pred             CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC------CCcceeE
Confidence            8999999998877  4444432          2 237889999994456667777899999999987      33332  


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc----CCCCeeEEEEccCC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASD  333 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~  333 (387)
                      .+. +...+.+++|+|+++++++++..++.|.+||+.+..               +...+..    |.+....+ ++|++
T Consensus       319 ~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~---------------l~~~i~~g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          319 SIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR---------------LSALVDVGKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             EEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE---------------EEEEEECSSSBCCTTCEEE-EETTT
T ss_pred             Eec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe---------------EEEeeccCCCCCCCCCccc-CCCCC
Confidence            443 556678899999999888788889999999999852               2333332    54433333 57886


Q ss_pred             CeEEEEecCCCCCCCCCceEEEEecCCCc-ccccchhhhhhhccCceEEEeeecC
Q 016547          334 PWTVVSVSDDCDSTGGGGTLQIWRMSDLI-YRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       334 ~~l~~s~s~d~~tg~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ..++++.+      ..|++|.+||+.... .....++++++.+|...+..++|||
T Consensus       382 g~~~~s~~------~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p  430 (543)
T 1nir_A          382 GPVWSTSH------LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP  430 (543)
T ss_dssp             EEEEEEEB------SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             ccEEEecc------CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence            66666543      135899999998310 0011788899999998888899987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=2.1e-24  Score=184.60  Aligned_cols=274  Identities=8%  Similarity=0.030  Sum_probs=195.3

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecC-------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      ......+..++|+| +++++++++.       ++.|.+||..++            +....+....  .+..++|+|+|+
T Consensus        37 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~--~~~~~~~s~dg~  101 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTL------------EVTQAIHNDL--KPFGATINNTTQ  101 (353)
T ss_dssp             EEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTC------------CEEEEEEESS--CCCSEEEETTTT
T ss_pred             hhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCC------------eEEEEEecCC--CcceEEECCCCC
Confidence            34567789999999 6666666553       568999999988            4555555433  356899999999


Q ss_pred             EEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          101 YVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       101 ~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      +++ +...++.|.+||..++..........                          ..     ..-......+.+++|+|
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~--------------------------~~-----~~~~~~~~~~~~~~~s~  150 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDD--------------------------RK-----RTEEVRPLQPRELVADD  150 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCC--------------------------CC-----CCSSCCCCEEEEEEEET
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCC--------------------------Cc-----cccccCCCCCceEEECC
Confidence            654 55668999999998654321111000                          00     00000112368899999


Q ss_pred             CCCeeEEEe-cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          180 SSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       180 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ++..++++. +.++.|.+||..+++  ....+..+...+..++|+| +++++++++.++.|.+||..+      ++.+..
T Consensus       151 dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~------~~~~~~  221 (353)
T 3vgz_A          151 ATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD------NKILSR  221 (353)
T ss_dssp             TTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT------TEEEEE
T ss_pred             CCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC------CeEEEE
Confidence            995444444 458899999998877  4555554566689999999 999999999999999999988      777666


Q ss_pred             ecc----ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          259 FEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       259 ~~~----~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      +..    +...+..++|+|++++++++...++.|.+||+.+...               ...+....  ...++|+|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---------------~~~~~~~~--~~~~~~s~dg~  284 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI---------------LAKVAAPE--SLAVLFNPARN  284 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE---------------EEEEECSS--CCCEEEETTTT
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---------------EEEEEcCC--CceEEECCCCC
Confidence            653    4556889999999998887777779999999987522               22222222  25799999999


Q ss_pred             eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +++++...       ++.|.+||+.      +++.+..+.. ...+.+++|+|
T Consensus       285 ~l~v~~~~-------~~~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~  323 (353)
T 3vgz_A          285 EAYVTHRQ-------AGKVSVIDAK------SYKVVKTFDT-PTHPNSLALSA  323 (353)
T ss_dssp             EEEEEETT-------TTEEEEEETT------TTEEEEEEEC-CSEEEEEEECT
T ss_pred             EEEEEECC-------CCeEEEEECC------CCeEEEEEec-CCCCCeEEEcC
Confidence            88875544       4999999998      6777666654 34678888886

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.5e-24  Score=184.78  Aligned_cols=262  Identities=11%  Similarity=0.182  Sum_probs=176.2

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCC-CcEEEEecc--CCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDS-PDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      +......|...+.+++|+| ++++|++++.+ +.|.+|+++  ++.          ...+..+..+.  .+..++|+|++
T Consensus        29 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~s~dg   95 (343)
T 1ri6_A           29 TLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESALPG--SLTHISTDHQG   95 (343)
T ss_dssp             EEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEECSS--CCSEEEECTTS
T ss_pred             EEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccccCC--CCcEEEEcCCC
Confidence            3455567889999999999 77777777665 999999997  331          02233344433  46799999999


Q ss_pred             CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      ++|++++ .++.|.+||+.++..                                     ......+.. ...+.+++|+
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~~~~-------------------------------------~~~~~~~~~-~~~~~~~~~s  137 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLEDGLP-------------------------------------VGVVDVVEG-LDGCHSANIS  137 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEE-------------------------------------EEEEEEECC-CTTBCCCEEC
T ss_pred             CEEEEEecCCCeEEEEECCCCcc-------------------------------------ccccccccC-CCCceEEEEC
Confidence            9886665 488999999942110                                     001122222 2358889999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccC-CCCceeE--Eee-ccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCC
Q 016547          179 PSSAQEFCSVGDDSCLILWDARV-GTSPVIK--VEK-AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVG  253 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~  253 (387)
                      |++..+++++..++.|.+||+.+ ++.....  ... .....+..++|+| +++++++++ .++.|.+||+....    +
T Consensus       138 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~----g  212 (343)
T 1ri6_A          138 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH----G  212 (343)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----S
T ss_pred             CCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----C
Confidence            99944444444899999999987 4421111  222 2345788999999 888665554 78999999996421    2


Q ss_pred             Cc--eEEec----cc--cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          254 SP--INKFE----GH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       254 ~~--~~~~~----~~--~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      ..  ...+.    .+  ...+..++|+|+++++++++..++.|.+||+......           ...+..+..+.. +.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----------~~~~~~~~~~~~-~~  280 (343)
T 1ri6_A          213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----------LSKEGFQPTETQ-PR  280 (343)
T ss_dssp             CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----------EEEEEEEECSSS-CC
T ss_pred             cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----------eEEeeeecCCCc-cc
Confidence            22  22222    11  2357789999999988878888999999999842111           022333444443 88


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .++|+|+++++++++.       .|+.|.+|+++
T Consensus       281 ~~~~s~dg~~l~~~~~-------~~~~v~v~~~d  307 (343)
T 1ri6_A          281 GFNVDHSGKYLIAAGQ-------KSHHISVYEIV  307 (343)
T ss_dssp             CEEECTTSSEEEEECT-------TTCEEEEEEEE
T ss_pred             eEEECCCCCEEEEecC-------CCCeEEEEEEc
Confidence            9999999998886443       45999999765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.2e-25  Score=187.22  Aligned_cols=251  Identities=14%  Similarity=0.111  Sum_probs=180.3

Q ss_pred             EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCC-CcCccccCC
Q 016547           49 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATDP  127 (387)
Q Consensus        49 t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~  127 (387)
                      +++.|++|++||+.++            +. ..+..|.. .|.+++|+|++++|++++ ++.|.+||+.+ +...     
T Consensus        17 ~~~~~~~i~~~d~~~~------------~~-~~~~~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----   76 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR------------KM-RVVWQTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----   76 (297)
T ss_dssp             -CCCCEEEEEEETTTT------------EE-EEEEEESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----
T ss_pred             CCCcceeEEEEeCCCC------------ce-eeeccCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----
Confidence            4567899999999887            33 34555665 689999999999999987 88999999976 4221     


Q ss_pred             CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCCeeEEEec--CCCeEEEEEc--cCC
Q 016547          128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVG--DDSCLILWDA--RVG  202 (387)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~--~~~  202 (387)
                                                         .....+ ...+.+++|+|++ ..+++++  .++...+|.+  ..+
T Consensus        77 -----------------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           77 -----------------------------------KVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             -----------------------------------ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC
T ss_pred             -----------------------------------EeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC
Confidence                                               222233 3678899999999 6777776  3345555554  444


Q ss_pred             CCceeEEeeccCCCeeEEEecCCCCCeEE-EeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547          203 TSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                      .   ...+.. ...+..++|+| ++++|+ +++.++.+++|+++..     ......+..+...+.+++|+|++++++++
T Consensus       121 ~---~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  190 (297)
T 2ojh_A          121 T---PRLMTK-NLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFN  190 (297)
T ss_dssp             C---CEECCS-SSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred             c---eEEeec-CCCccceEECC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEE
Confidence            3   233333 33588999999 888777 7888999999998642     34456666788889999999999987666


Q ss_pred             ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCC-----CCceEEEE
Q 016547          282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-----GGGTLQIW  356 (387)
Q Consensus       282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~-----~dg~i~iw  356 (387)
                      +..++.+++|++.....              ....+..|...+..++|+|++++++++..++  ...     .++.|++|
T Consensus       191 ~~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          191 SSRTGQMQIWRVRVDGS--------------SVERITDSAYGDWFPHPSPSGDKVVFVSYDA--DVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             ECTTSSCEEEEEETTSS--------------CEEECCCCSEEEEEEEECTTSSEEEEEEEET--TCCSCCSSEEEEEEEE
T ss_pred             ecCCCCccEEEECCCCC--------------CcEEEecCCcccCCeEECCCCCEEEEEEcCC--CCCcccccCceEEEEE
Confidence            66789999999874222              2344556777899999999999888655432  100     23679999


Q ss_pred             ecCCCcccccchh--hhhhhccCceEEEeeecC
Q 016547          357 RMSDLIYRPQDEV--LAELEKFKAHVISCTSKP  387 (387)
Q Consensus       357 ~~~~~~~~~~~~~--~~~~~~~~~~v~~~~f~P  387 (387)
                      |+.      +++.  +..+.+|...+..++|+|
T Consensus       255 d~~------~~~~~~~~~~~~~~~~~~~~~~sp  281 (297)
T 2ojh_A          255 DMD------GGNVETLFDLFGGQGTMNSPNWSP  281 (297)
T ss_dssp             ETT------SCSCEEEEEEEESTTTSCSCCBCT
T ss_pred             ecC------CCCceeeeccCCCCcccccceECC
Confidence            998      4443  444557788888888887

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=5.9e-25  Score=206.48  Aligned_cols=264  Identities=11%  Similarity=0.108  Sum_probs=185.7

Q ss_pred             CCcEEEEEecCCCCcEEEEecC-CC-----cEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----------------
Q 016547           31 PGEVNRIRELPQNTKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------------   87 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------------   87 (387)
                      ...|.+++|+| ++++|++++. |+     .|++||+.+++            ....+..+..                 
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQ------------TRLLVDSKVVLPGTETLSDEEKARRER  102 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCC------------EEEEECGGGTC----------------
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCc------------eeEccchhhcccccccccchhhhhhhh
Confidence            56799999999 8999999888 88     89999999883            3333333321                 


Q ss_pred             ------CceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           88 ------NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        88 ------~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                            ..|.+++|+|||++|++++. +.|.+||+.++...                                      .
T Consensus       103 ~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~  143 (741)
T 2ecf_A          103 QRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------A  143 (741)
T ss_dssp             ----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------S
T ss_pred             hhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------e
Confidence                  13678999999999999886 99999999764100                                      1


Q ss_pred             ceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCC----------------eeEEEecCC
Q 016547          162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD----------------LHCVDWNPL  225 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~  225 (387)
                      ...+..|...+..++|+|+| +.++.++ ++.|++||+.+++  .......+...                +..++|+| 
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-  218 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-  218 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-
T ss_pred             EEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-
Confidence            13345567789999999999 6677766 4699999998765  22222222221                47899999 


Q ss_pred             CCCeEEEeeCCC---------------------------------eEEEEEeccCCCCCCCCceEEec---cccceEEEE
Q 016547          226 DDNLILTGSADN---------------------------------SVRMFDRRNLTSNGVGSPINKFE---GHSAAVLCV  269 (387)
Q Consensus       226 ~~~~l~~~~~dg---------------------------------~i~~~d~~~~~~~~~~~~~~~~~---~~~~~i~~~  269 (387)
                      ++++|++++.|+                                 .|.+||+.+.      .....+.   .|...+..+
T Consensus       219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~------~~~~~~~~~~~~~~~~~~~  292 (741)
T 2ecf_A          219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ------AQTQWIDLGKEQDIYLARV  292 (741)
T ss_dssp             TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT------CCCEEECCCSCSSEEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC------CceEEecCCCCcceEEEEE
Confidence            999999988765                                 7888887640      2222222   477889999


Q ss_pred             EEcCCCCeeEEEec----CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC----CeeEEEEccCCCeEEEEec
Q 016547          270 QWSPDKSSVFGSSA----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD----KVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       270 ~~~~~~~~ll~s~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~s~s  341 (387)
                      +| |||++|++++.    .+..|++||+.+...               ...+..+..    .+..++|+|+|+ +++   
T Consensus       293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---------------~~~~~~~~~~~~~~~~~~~~spdg~-~~~---  352 (741)
T 2ecf_A          293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---------------RVLAHETSPTWVPLHNSLRFLDDGS-ILW---  352 (741)
T ss_dssp             EE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---------------EEEEEEECSSCCCCCSCCEECTTSC-EEE---
T ss_pred             Ee-CCCCEEEEEEecccCCeEEEEEEECCCCce---------------EEEEEcCCCCcCCcCCceEECCCCe-EEE---
Confidence            99 99998654443    367899999987532               222222322    456899999999 444   


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe-eecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC-TSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~-~f~P  387 (387)
                          +++.||.++||.++.     .+. +..+..|...|.++ .|+|
T Consensus       353 ----~~~~~g~~~l~~~~~-----~~~-~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          353 ----SSERTGFQHLYRIDS-----KGK-AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             ----EECTTSSCEEEEECS-----SSC-EEESCCSSSCEEEEEEEET
T ss_pred             ----EecCCCccEEEEEcC-----CCC-eeeeeecceEEEeEeEEeC
Confidence                344458888887762     234 66777777888777 4876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.1e-23  Score=178.41  Aligned_cols=248  Identities=9%  Similarity=0.060  Sum_probs=174.5

Q ss_pred             cCCCcEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCC-eEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           29 IHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP-DLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+...+ +++|+| +++ +++++..++.|.+||+.++            +. ...+..+.. +..+++|+|+|++|+++.
T Consensus        38 ~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~  102 (331)
T 3u4y_A           38 LGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLE------------PPKVVAIQEGQS-SMADVDITPDDQFAVTVT  102 (331)
T ss_dssp             CCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSS------------SCEEEEEEECSS-CCCCEEECTTSSEEEECC
T ss_pred             ccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCC------------ceeEEecccCCC-CccceEECCCCCEEEEec
Confidence            345556 999999 666 5555555899999999988            44 555666654 444499999999999666


Q ss_pred             CCC---eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          107 KDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       107 ~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      .++   .|.+||+.++...                                        ..+.. .....+++|+|++..
T Consensus       103 ~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~spdg~~  141 (331)
T 3u4y_A          103 GLNHPFNMQSYSFLKNKFI----------------------------------------STIPI-PYDAVGIAISPNGNG  141 (331)
T ss_dssp             CSSSSCEEEEEETTTTEEE----------------------------------------EEEEC-CTTEEEEEECTTSSC
T ss_pred             CCCCcccEEEEECCCCCeE----------------------------------------EEEEC-CCCccceEECCCCCE
Confidence            553   8999999764321                                        22222 334689999999955


Q ss_pred             eEEEecCCCe-EEEEEccCCCCcee--EEeeccCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCCCCCCc---e
Q 016547          184 EFCSVGDDSC-LILWDARVGTSPVI--KVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSP---I  256 (387)
Q Consensus       184 ~l~~~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~---~  256 (387)
                      ++++...++. |.+|++........  .........+..++|+| +++++++ +..++.|.+||+.+      ++.   +
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~~~~~~~  214 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------PENITLL  214 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------TTSCEEE
T ss_pred             EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------Cccccee
Confidence            6666667688 99999986442110  12223455689999999 8885554 45689999999987      666   6


Q ss_pred             EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc----CC---CCeeEEEE
Q 016547          257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HR---DKVVDFHW  329 (387)
Q Consensus       257 ~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~v~~~~~  329 (387)
                      ..+.. ...+..++|+|+|++++++...++.|.+||+.+.....             +..+..    +.   .....++|
T Consensus       215 ~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
T 3u4y_A          215 NAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-------------VKSFGHGLLIDPRPLFGANQMAL  280 (331)
T ss_dssp             EEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-------------EEEEECCCCCCCGGGTTCCCEEE
T ss_pred             eeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-------------ecccccccccCCCCcccccceEE
Confidence            66664 45678999999999877777778899999998743211             111111    11   12356899


Q ss_pred             ccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          330 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +|+++++++++.++       +.|.+||+..
T Consensus       281 spdg~~l~v~~~~~-------~~v~v~d~~~  304 (331)
T 3u4y_A          281 NKTETKLFISANIS-------RELKVFTISG  304 (331)
T ss_dssp             CTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred             CCCCCEEEEecCCC-------CcEEEEEecC
Confidence            99999998765544       8999999983

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=1.3e-24  Score=189.96  Aligned_cols=223  Identities=11%  Similarity=0.102  Sum_probs=158.7

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCC----CCCCCeEEEeccCCCceEEEEECCCCCEEE---
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA----TNSRPDLILTGHQDNAEFALAMCPTEPYVL---  103 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~---  103 (387)
                      ...++.+++++ .+.++++++.|+ +++|+.............    ........+ .+.. .|.+++|+|++++|+   
T Consensus        36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF-PIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS-CEEEEEECTTSCEEEEEE
T ss_pred             CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC-cccEEEEcCCCCEEEEEE
Confidence            34588999999 777888898887 999886543111000000    000111122 2333 699999999999999   


Q ss_pred             -EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          104 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       104 -s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                       +++.|+.|++||+.+.......                             ..........+.+|...|.+++|+|+++
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~h~~~V~~v~~~p~~~  162 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQ-----------------------------QKRPFAYHKLLKDAGGMVIDMKWNPTVP  162 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCS-----------------------------SCCCSEEEECCCSGGGSEEEEEECSSCT
T ss_pred             eccCCCceEEEEEccccccCCcC-----------------------------CcceeeeeeccCCCCCceEEEEECCCCC
Confidence             8999999999999753110000                             0000111245567999999999999854


Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc-
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-  261 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-  261 (387)
                      .+|++++.||+|++||++++.  .......|...|++++|+| ++++|++|+.||.|++||.+.       .....+.. 
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~  232 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCP  232 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCC
T ss_pred             CEEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCC
Confidence            899999999999999999875  4445567888999999999 899999999999999999882       33333332 


Q ss_pred             ------ccceEEEEEEcCCCCeeEEEecCCCe------EEEEeCCCC
Q 016547          262 ------HSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEKV  296 (387)
Q Consensus       262 ------~~~~i~~~~~~~~~~~ll~s~~~d~~------i~vwd~~~~  296 (387)
                            |...|.+++|++++.++++....||.      +++|++++.
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                  33489999999998866555555543      899999874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1e-23  Score=179.85  Aligned_cols=273  Identities=11%  Similarity=0.158  Sum_probs=181.2

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      +.......+...+..++|+| ++++++++..  ++.|.+|++.++..          +.+..+..+.. .+..++|+|+|
T Consensus        30 ~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~----------~~~~~~~~~~~-~p~~~a~spdg   97 (347)
T 3hfq_A           30 LTNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTA----------HKLNTVVAPGT-PPAYVAVDEAR   97 (347)
T ss_dssp             EEEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEE----------EEEEEEEEESC-CCSEEEEETTT
T ss_pred             EEEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcE----------EEeeeeecCCC-CCEEEEECCCC
Confidence            33445556778889999999 7775555432  68999999976621          23333344554 46799999999


Q ss_pred             CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      ++|++++ .++.|.+|++............  ...                        ...+.  ...+...+.+++|+
T Consensus        98 ~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~--~~~------------------------~~~p~--~~~~~~~~~~~~~s  149 (347)
T 3hfq_A           98 QLVYSANYHKGTAEVMKIAADGALTLTDTV--QHS------------------------GHGPR--PEQDGSHIHYTDLT  149 (347)
T ss_dssp             TEEEEEETTTTEEEEEEECTTSCEEEEEEE--ECC------------------------CCCSS--TTCSSCCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCeeeccee--ecC------------------------CCCCC--ccccCCCceEEEEC
Confidence            9888877 7899999999632110000000  000                        00000  01233468899999


Q ss_pred             cCCCeeEEEecCCCeEEEEEcc-CCCCceeEEeec-cCCCeeEEEecCCCCCeEEE-eeCCCeEEEEEeccCCCCCCCC-
Q 016547          179 PSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKA-HDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGS-  254 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~-  254 (387)
                      |++ +++++...++.|.+||+. .++......... ....+..++|+| +++++++ +..++.|.+|++....    ++ 
T Consensus       150 pdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~  223 (347)
T 3hfq_A          150 PDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAF  223 (347)
T ss_dssp             TTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEE
T ss_pred             CCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----Cce
Confidence            999 477888889999999998 443211222222 234678899999 8885555 5668999999988421    22 


Q ss_pred             -ceEEecccc------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          255 -PINKFEGHS------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       255 -~~~~~~~~~------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                       .+..+....      ..+..++|+|+|++|+++...++.|.+|++...+..            ..+..+..+...+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~------------~~~~~~~~~~~~~~~~  291 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL------------TLIQQISTEGDFPRDF  291 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE------------EEEEEEECSSSCCCEE
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE------------EEeEEEecCCCCcCeE
Confidence             222332222      458899999999988778888999999999743211            2344555666678999


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +|+|++++|+++..++       +.|.+|+++
T Consensus       292 ~~spdg~~l~v~~~~~-------~~v~v~~~d  316 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQNT-------DNATLYARD  316 (347)
T ss_dssp             EECTTSSEEEEEETTT-------TEEEEEEEC
T ss_pred             EECCCCCEEEEEEcCC-------CcEEEEEEe
Confidence            9999999988755443       899999765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=5.6e-24  Score=180.29  Aligned_cols=238  Identities=11%  Similarity=0.033  Sum_probs=169.0

Q ss_pred             EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-CCeEEEEEc
Q 016547           38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSI  116 (387)
Q Consensus        38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~  116 (387)
                      .|.+..+.++++++.++.|.+||.+++            +....+..+.. .+ .++|+|+++++++++. ++.|.+||+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTL------------EILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTC------------CEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccc------------ceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            345546677889999999999999988            55555655544 45 9999999997766554 889999999


Q ss_pred             CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC---e
Q 016547          117 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---C  193 (387)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~  193 (387)
                      .++...                                       ...+..+..+..+++|+|++ ++++++..++   .
T Consensus        70 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~  109 (331)
T 3u4y_A           70 QLEPPK---------------------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFN  109 (331)
T ss_dssp             SSSSCE---------------------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCE
T ss_pred             CCCcee---------------------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCccc
Confidence            764320                                       23344455555559999999 6666555553   8


Q ss_pred             EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCe-EEEEEeccCCCCCCCCce----EEeccccceEE
Q 016547          194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNS-VRMFDRRNLTSNGVGSPI----NKFEGHSAAVL  267 (387)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~-i~~~d~~~~~~~~~~~~~----~~~~~~~~~i~  267 (387)
                      |.+||+.+++  ....+. ....+.+++|+| ++++++++ ..++. |.+|++..      ...+    .........+.
T Consensus       110 i~v~d~~~~~--~~~~~~-~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          110 MQSYSFLKNK--FISTIP-IPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDA------DGVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             EEEEETTTTE--EEEEEE-CCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECT------TCCEEEEEEEEECSSSSEE
T ss_pred             EEEEECCCCC--eEEEEE-CCCCccceEECC-CCCEEEEEecCCCceEEEEEECC------CCcEeecCCccccCCCCcc
Confidence            9999998876  344443 445679999999 88755554 55588 99999885      2222    11112345678


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      .++|+|+|+++++++..++.|.+||+......            ..+..+. ....+..++|+|++++++++..      
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------------~~~~~~~-~~~~~~~~~~spdg~~l~v~~~------  240 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQNPENI------------TLLNAVG-TNNLPGTIVVSRDGSTVYVLTE------  240 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSSTTSC------------EEEEEEE-CSSCCCCEEECTTSSEEEEECS------
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCccc------------ceeeecc-CCCCCceEEECCCCCEEEEEEc------
Confidence            99999999988888888999999999874320            1123333 3356789999999998887543      


Q ss_pred             CCCceEEEEecC
Q 016547          348 GGGGTLQIWRMS  359 (387)
Q Consensus       348 ~~dg~i~iw~~~  359 (387)
                       .++.|.+||+.
T Consensus       241 -~~~~i~~~d~~  251 (331)
T 3u4y_A          241 -STVDVFNFNQL  251 (331)
T ss_dssp             -SEEEEEEEETT
T ss_pred             -CCCEEEEEECC
Confidence             34899999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.9e-23  Score=177.88  Aligned_cols=272  Identities=8%  Similarity=0.103  Sum_probs=173.3

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC-CeEEEEEcC--CC
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-KSVVLWSIQ--DH  119 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~  119 (387)
                      ...++++++.|+.|++||++....         ...... ..|.. .+.+++|+|++++|++++.+ +.|.+|++.  ++
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~---------~~~~~~-~~~~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~   72 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGA---------LTLTQV-VDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG   72 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSC---------EEEEEE-EECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCc---------EEEeee-EecCC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence            334555658899999999964210         012222 23444 47899999999998888876 999999997  22


Q ss_pred             cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEc
Q 016547          120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA  199 (387)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  199 (387)
                      ..                                      ..+..+..+. .+..++|+|++..+++++..++.|.+||+
T Consensus        73 ~~--------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           73 AL--------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CE--------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ce--------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            11                                      1112233333 67899999999445556666899999999


Q ss_pred             cCCCC-ceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceE--Eecc-ccceEEEEEEcCC
Q 016547          200 RVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPIN--KFEG-HSAAVLCVQWSPD  274 (387)
Q Consensus       200 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~  274 (387)
                      ..+.. ...... .....+.+++|+| +++++++++ .++.|++||+.....   ...+.  .+.. ....+.+++|+|+
T Consensus       114 ~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          114 EDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             ETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             CCCccccccccc-cCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc---eeeecccccccCCCCCcceEEECCC
Confidence            53221 122233 3345689999999 888888777 899999999985210   11111  2222 3457889999999


Q ss_pred             CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-c--CCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547          275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  351 (387)
Q Consensus       275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg  351 (387)
                      ++++++++..++.|.+||+.........        ........ +  ....+..++|+|++++++++.+.       |+
T Consensus       189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-------~~  253 (343)
T 1ri6_A          189 EQYAYCVNELNSSVDVWELKDPHGNIEC--------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-------AS  253 (343)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTSCCEE--------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-------TT
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEE--------EeeccccCccccccCCccceEECCCCCEEEEEecC-------CC
Confidence            9988777778999999999642111000        01111111 1  12357789999999998875544       49


Q ss_pred             eEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          352 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       352 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .|++|++....  ...+.+..+..+.. +.+++|+|
T Consensus       254 ~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~  286 (343)
T 1ri6_A          254 LITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDH  286 (343)
T ss_dssp             EEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECT
T ss_pred             EEEEEEEcCCC--CceEEeeeecCCCc-cceEEECC
Confidence            99999998210  01233334443333 67777775

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=4e-22  Score=170.97  Aligned_cols=295  Identities=8%  Similarity=0.036  Sum_probs=187.3

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCC----CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDS----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      ..... |...+..++|+| ++++|++++.+    +.|.+|+++.....        .+.+.....+.. ....+++  ++
T Consensus        43 ~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~--------~~~~~~~~~~~~-~p~~~~~--dg  109 (361)
T 3scy_A           43 PLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGT--------LHLLNTQKTMGA-DPCYLTT--NG  109 (361)
T ss_dssp             EEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTE--------EEEEEEEECSSS-CEEEEEE--CS
T ss_pred             Eeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCc--------EEEeeEeccCCC-CcEEEEE--CC
Confidence            33444 778888999999 88888888775    79999998763100        012223333333 3457777  88


Q ss_pred             CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      ++|++++ .++.|.+|++.............. . .+                     ...   .....+...+.+++|+
T Consensus       110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~-~-~g---------------------~~~---~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A          110 KNIVTANYSGGSITVFPIGQDGALLPASDVIE-F-KG---------------------SGP---DKERQTMPHLHCVRIT  163 (361)
T ss_dssp             SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEE-C-CC---------------------CCS---CTTTCSSCCEEEEEEC
T ss_pred             CEEEEEECCCCEEEEEEeCCCCcCcccceeEE-c-cC---------------------CCC---CccccCCCcceEEEEC
Confidence            8777665 688999999975322111100000 0 00                     000   0011233457899999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCC----c-e------eEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEecc
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTS----P-V------IKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN  246 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~----~-~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~  246 (387)
                      |++..++++...++.|.+|++.....    . .      ..........+..++|+| +++++++++ .++.|.+||+.+
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC
Confidence            99955666666789999999876542    1 1      122233456688999999 998887777 689999999985


Q ss_pred             CCCCCCCCc--eEEec---cccceEEEEEEcCCCCeeEEEecC-CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          247 LTSNGVGSP--INKFE---GHSAAVLCVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       247 ~~~~~~~~~--~~~~~---~~~~~i~~~~~~~~~~~ll~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                            +..  +..+.   .+......++|+|+|++|+++... ++.|.+|++.......           ..+..+.. 
T Consensus       243 ------g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-----------~~~~~~~~-  304 (361)
T 3scy_A          243 ------GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-----------TKVGYQLT-  304 (361)
T ss_dssp             ------TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-----------EEEEEEEC-
T ss_pred             ------CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-----------EEeeEecC-
Confidence                  432  33332   233456899999999987766666 7899999997321110           12333333 


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh-hccCceEEEeeecC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  387 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~f~P  387 (387)
                      ...+..++|+|++++|+++...+       +.|.+|+++..    ++++.... ..+...+.+++|.+
T Consensus       305 g~~~~~~~~spdg~~l~~~~~~~-------~~v~v~~~d~~----~g~~~~~~~~~~~~~p~~v~~~~  361 (361)
T 3scy_A          305 GIHPRNFIITPNGKYLLVACRDT-------NVIQIFERDQA----TGLLTDIKKDIKVDKPVCLKFVD  361 (361)
T ss_dssp             SSCCCEEEECTTSCEEEEEETTT-------TEEEEEEECTT----TCCEEECSCCEECSSEEEEEEEC
T ss_pred             CCCCceEEECCCCCEEEEEECCC-------CCEEEEEEECC----CCcEeecceeeeCCCCeEEEEcC
Confidence            45778999999999988755444       89999877621    44443332 23445788888863

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=4.5e-24  Score=199.96  Aligned_cols=230  Identities=11%  Similarity=0.114  Sum_probs=164.3

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--ceEEEEECCCCCEEEEecCC-
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEPYVLSGGKD-  108 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~v~~~~~~~~~~~l~s~~~d-  108 (387)
                      ..+.+++|+| +++++++ +.||+|++||+.++            +....+.+|...  .|.+++|+|||++|++++.+ 
T Consensus        17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~   82 (723)
T 1xfd_A           17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETN------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE   82 (723)
T ss_dssp             CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGC------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC
T ss_pred             ccccccEEcC-CCcEEEE-eCCCCEEEEECCCC------------cEEEEeccccccccccceEEECCCCCEEEEEecCc
Confidence            3467899999 7787766 78999999999998            555666666531  37899999999999998764 


Q ss_pred             --------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          109 --------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       109 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                              +.+.+||+.++...                                      .+.....|...+..++|+|+
T Consensus        83 ~~~~~~~~~~i~~~d~~~~~~~--------------------------------------~l~~~~~~~~~~~~~~~SPd  124 (723)
T 1xfd_A           83 PIYQHSYTGYYVLSKIPHGDPQ--------------------------------------SLDPPEVSNAKLQYAGWGPK  124 (723)
T ss_dssp             CCSSSCCCSEEEEEESSSCCCE--------------------------------------ECCCTTCCSCCCSBCCBCSS
T ss_pred             cceeecceeeEEEEECCCCceE--------------------------------------eccCCccccccccccEECCC
Confidence                    78889999865321                                      01112344556889999999


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCC------------------eeEEEecCCCCCeEEEeeCCC-----
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD------------------LHCVDWNPLDDNLILTGSADN-----  237 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~~l~~~~~dg-----  237 (387)
                      | +.|+.++. +.|++||+.+++.  ......+...                  +.+++|+| +++.|++++.|+     
T Consensus       125 G-~~la~~~~-~~i~~~~~~~g~~--~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~  199 (723)
T 1xfd_A          125 G-QQLIFIFE-NNIYYCAHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPI  199 (723)
T ss_dssp             T-TCEEEEET-TEEEEESSSSSCC--EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCE
T ss_pred             C-CEEEEEEC-CeEEEEECCCCce--EEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccce
Confidence            9 67777765 7999999988773  3333332322                  37899999 999999987653     


Q ss_pred             -----------------------------eEEEEEeccCCCCCCCCceEEeccc------cceEEEEEEcCCCCeeEEEe
Q 016547          238 -----------------------------SVRMFDRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSS  282 (387)
Q Consensus       238 -----------------------------~i~~~d~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ll~s~  282 (387)
                                                   .|++||+.+      ++....+..+      ...+..++|+|||+.+++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence                                         789999887      5554555543      67899999999999653332


Q ss_pred             c---CCCeEEEEeCCCCCceeccCCCCCCCCceeeeee-ccCCCCe----eEEEEccCCCeEEEE
Q 016547          283 A---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKV----VDFHWNASDPWTVVS  339 (387)
Q Consensus       283 ~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v----~~~~~~~~~~~l~~s  339 (387)
                      .   .+..|++||+.++..               ...+ ..+...+    ..++|+|+|+.+++.
T Consensus       274 ~~~~~~~~i~~~d~~~g~~---------------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVC---------------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCE---------------EEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             cCCCCeEEEEEEeCCCCcc---------------eEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            2   346799999987522               1111 2233443    378999999988865

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=3.2e-24  Score=201.53  Aligned_cols=282  Identities=12%  Similarity=0.071  Sum_probs=188.7

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ..|.+++|+| ++++|++++. +.|++||+.++..          .....+..|.. .+..++|+|||++|+.++ ++.|
T Consensus       109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~----------~~~~~l~~~~~-~~~~~~~SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK----------AAVRQLTHGEG-FATDAKLSPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             EESCCCEECT-TSSEEEEEET-TEEEEEESSSCST----------TSCCBCCCSSS-CEEEEEECTTSSEEEEEE-TTEE
T ss_pred             cCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc----------ceEEEcccCCc-ccccccCCCCCCEEEEEe-CCcE
Confidence            3488999999 8888888876 8999999987610          02223455554 588999999999999987 5699


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      .+||+.++.........       ...+.                 ..............+..+.|+||| +.|++++.|
T Consensus       175 ~~~d~~~g~~~~~~~~~-------~~~~~-----------------~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d  229 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADG-------STTIG-----------------NGIAEFVADEEMDRHTGYWWAPDD-SAIAYARID  229 (741)
T ss_dssp             EEEETTTTEEEECCCCC-------CSSEE-----------------ESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEE
T ss_pred             EEEecCCCCEEEeccCC-------cccee-----------------ccccceeeeeccccccceEECCCC-CEEEEEEEc
Confidence            99999865322111000       00000                 000000000011235789999999 677777655


Q ss_pred             C---------------------------------eEEEEEccC-CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC--
Q 016547          192 S---------------------------------CLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--  235 (387)
Q Consensus       192 g---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  235 (387)
                      +                                 .|.+||+.+ ++...+.....|...+..++| | ++++|++++.  
T Consensus       230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~  307 (741)
T 2ecf_A          230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSR  307 (741)
T ss_dssp             CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEET
T ss_pred             CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecc
Confidence            4                                 788999988 762211111146778999999 9 9999887764  


Q ss_pred             ---CCeEEEEEeccCCCCCCCCceEEeccccc----eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCC
Q 016547          236 ---DNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  308 (387)
Q Consensus       236 ---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  308 (387)
                         +..|++||+.+      ++....+..+..    .+..++|+|+|+ ++++++.||.++||.+...+           
T Consensus       308 ~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~-----------  369 (741)
T 2ecf_A          308 DQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG-----------  369 (741)
T ss_dssp             TSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-----------
T ss_pred             cCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-----------
Confidence               56899999987      666666654443    346899999999 56788889988888776321           


Q ss_pred             CCceeeeeeccCCCCeeEE-EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          309 YPAGLFFQHAGHRDKVVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       309 ~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                         . ...+..|...+..+ .|+|+++.++++++.+     ....++||++..     .+..+..+.. ...+.+++|+|
T Consensus       370 ---~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~-----~~~~~~l~~~~~-----~g~~~~~l~~-~~~~~~~~~sp  434 (741)
T 2ecf_A          370 ---K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE-----SARESQIYAVPL-----QGGQPQRLSK-APGMHSASFAR  434 (741)
T ss_dssp             ---C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS-----CTTCBEEEEEET-----TCCCCEECCC-SCSEEEEEECT
T ss_pred             ---C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC-----CCceEEEEEEEc-----CCCCeeeccc-CCCceEEEECC
Confidence               1 33445677778887 5999999888765443     112899999862     2444455554 56678888887

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=5.9e-23  Score=191.85  Aligned_cols=256  Identities=11%  Similarity=0.058  Sum_probs=177.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccC-----CCCcccccCCCCCCCeEEEeccCC------------
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-----QPNRHAVLGATNSRPDLILTGHQD------------   87 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~h~~------------   87 (387)
                      ..+..+.+.+.+++|+| +++.||++ .|+.|++||+.+     ++.            ......+..            
T Consensus       114 ~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~------------~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          114 TYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA------------IAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC------------EESCSCCBTTEEESSCCGGGC
T ss_pred             EEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc------------EEeccCCCCCeEcccchhhhh
Confidence            34456788899999999 88888885 679999999988     632            211222211            


Q ss_pred             -CceEEEEECCCCCEEEEec---------------------------------CCCeEEEEEcCCCcCccccCCCcccCC
Q 016547           88 -NAEFALAMCPTEPYVLSGG---------------------------------KDKSVVLWSIQDHITSSATDPATAKSA  133 (387)
Q Consensus        88 -~~v~~~~~~~~~~~l~s~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~  133 (387)
                       ..+.++.|+|||++|++++                                 .+..|.+||+.++....          
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~----------  249 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY----------  249 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----------
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----------
Confidence             1247899999999999887                                 33567777776432110          


Q ss_pred             CCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC-----eEEEEEccCCCCceeE
Q 016547          134 GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIK  208 (387)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~  208 (387)
                                                  +.....|...+..++|+|++ +.+++++.++     .|.+||+.+++. ...
T Consensus       250 ----------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~  299 (706)
T 2z3z_A          250 ----------------------------LQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRT  299 (706)
T ss_dssp             ----------------------------CCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEE
T ss_pred             ----------------------------eccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeE
Confidence                                        01112456779999999999 6677766554     899999998731 111


Q ss_pred             Ee-eccCC---CeeEEEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE-EEEcCCCCeeEEEe
Q 016547          209 VE-KAHDA---DLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSS  282 (387)
Q Consensus       209 ~~-~~~~~---~i~~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ll~s~  282 (387)
                      .. ..+..   .+..++|+| .+++++++++.||.+++|++...     +..+..+..+...+.. ++|+|+++.+++++
T Consensus       300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            11 12222   246789998 25678899999999999998731     6677778777777876 79999999887777


Q ss_pred             cCCC----eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          283 AEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       283 ~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +.++    .|..||+....                ...+ .|...+.+++|+|++++++++++++    ...+.|++||+
T Consensus       375 ~~~~~~~~~l~~~d~~~~~----------------~~~l-~~~~~~~~~~~spdg~~l~~~~~~~----~~p~~i~l~d~  433 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGGK----------------TKDL-TPESGMHRTQLSPDGSAIIDIFQSP----TVPRKVTVTNI  433 (706)
T ss_dssp             SSSCTTCBEEEEEETTCCC----------------CEES-CCSSSEEEEEECTTSSEEEEEEECS----SCSCEEEEEES
T ss_pred             cCCCCceEEEEEEEcCCCC----------------ceec-cCCCceEEEEECCCCCEEEEEecCC----CCCcEEEEEEC
Confidence            7665    56666665531                1111 2566789999999999988776532    33467999998


Q ss_pred             CC
Q 016547          359 SD  360 (387)
Q Consensus       359 ~~  360 (387)
                      ..
T Consensus       434 ~~  435 (706)
T 2z3z_A          434 GK  435 (706)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.7e-23  Score=195.39  Aligned_cols=278  Identities=11%  Similarity=0.153  Sum_probs=184.3

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ..|.+++|+| ++.++++  .++.|++||+.++            +. ..+..+.. .+.+++|+|||++|+++ .|+.|
T Consensus        82 ~~v~~~~~sp-d~~~~~~--~~~~i~~~d~~~~------------~~-~~l~~~~~-~~~~~~~SpdG~~la~~-~~~~i  143 (706)
T 2z3z_A           82 FPSFRTLDAG-RGLVVLF--TQGGLVGFDMLAR------------KV-TYLFDTNE-ETASLDFSPVGDRVAYV-RNHNL  143 (706)
T ss_dssp             CCCEEEEETT-TTEEEEE--ETTEEEEEETTTT------------EE-EEEECCTT-CCTTCEECTTSSEEEEE-ETTEE
T ss_pred             cCceeEEECC-CCeEEEE--ECCEEEEEECCCC------------ce-EEccCCcc-cccCCcCCCCCCEEEEE-ECCeE
Confidence            5699999999 5555555  3589999999877            32 23444444 47789999999999985 58999


Q ss_pred             EEEEcCC-----CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          112 VLWSIQD-----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       112 ~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .+||+.+     +.........       .....              .   +..  ..+.+...+.++.|+||| +.|+
T Consensus       144 ~v~~~~~~~~~~g~~~~~~~~~-------~~~~~--------------~---g~~--~~~ee~~~~~~~~~SpDg-~~la  196 (706)
T 2z3z_A          144 YIARGGKLGEGMSRAIAVTIDG-------TETLV--------------Y---GQA--VHQREFGIEKGTFWSPKG-SCLA  196 (706)
T ss_dssp             EEEECBCTTSCCCCCEESCSCC-------BTTEE--------------E---SSC--CGGGCTTCCCSEEECTTS-SEEE
T ss_pred             EEEecCcccccCCCcEEeccCC-------CCCeE--------------c---ccc--hhhhhcCCCceEEECCCC-CEEE
Confidence            9999986     4321110000       00000              0   000  112223456889999999 6677


Q ss_pred             Eec---------------------------------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547          187 SVG---------------------------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  233 (387)
Q Consensus       187 ~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (387)
                      +++                                 .+..|.+||+.+++...+.....|...+.+++|+| +++.|+++
T Consensus       197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  275 (706)
T 2z3z_A          197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVA  275 (706)
T ss_dssp             EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEE
T ss_pred             EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEE
Confidence            765                                 45789999998876211111124667899999999 99999998


Q ss_pred             eCCC-----eEEEEEeccCCCCCCCCceEEec--cccc---eEEEEEEcC--CCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547          234 SADN-----SVRMFDRRNLTSNGVGSPINKFE--GHSA---AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       234 ~~dg-----~i~~~d~~~~~~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~~~ll~s~~~d~~i~vwd~~~~~~~~~  301 (387)
                      +.++     .|.+||+.+      ++....+.  .+..   .+..++|+|  +|++ +++++.|+.++||++.....   
T Consensus       276 ~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~~~~g~~~l~~~~~~~~---  345 (706)
T 2z3z_A          276 EVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQSRRDGWNHLYLYDTTGR---  345 (706)
T ss_dssp             EECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEECTTSSCEEEEEETTSC---
T ss_pred             EeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCEE-EEEEccCCccEEEEEECCCC---
Confidence            8776     899999987      53333332  1221   246789999  9984 66888899999998873222   


Q ss_pred             cCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceE
Q 016547          302 QGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  380 (387)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v  380 (387)
                                 ....+..+...+.. ++|+|+++.++++++.+   +.....|..||+.      +++ +..+. |...+
T Consensus       346 -----------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~---~~~~~~l~~~d~~------~~~-~~~l~-~~~~~  403 (706)
T 2z3z_A          346 -----------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA---SPLERHFYCIDIK------GGK-TKDLT-PESGM  403 (706)
T ss_dssp             -----------EEEECCCSSSCEEEEEEECTTSSEEEEEESSS---CTTCBEEEEEETT------CCC-CEESC-CSSSE
T ss_pred             -----------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCC---CCceEEEEEEEcC------CCC-ceecc-CCCce
Confidence                       24445667777877 79999999988766543   1112367777776      333 33333 66778


Q ss_pred             EEeeecC
Q 016547          381 ISCTSKP  387 (387)
Q Consensus       381 ~~~~f~P  387 (387)
                      .+++|+|
T Consensus       404 ~~~~~sp  410 (706)
T 2z3z_A          404 HRTQLSP  410 (706)
T ss_dssp             EEEEECT
T ss_pred             EEEEECC
Confidence            8999987

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=1.5e-23  Score=183.23  Aligned_cols=228  Identities=15%  Similarity=0.196  Sum_probs=155.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .++.+++++++.++++++.|+ +++|+............       ...                 ....... .....+
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-------~~~-----------------~~~~~~~-~~~~~~   91 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-------DPN-----------------KIVDKVQ-GLLVPM   91 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-------CTT-----------------CEEECCC-CEEECC
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-------Ccc-----------------cccccCc-cccccC
Confidence            367899999999999999887 89988753211100000       000                 0000000 111235


Q ss_pred             CCCeEEEEEccCCCeeEE----EecCCCeEEEEEccCC-----CC--c--eeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          169 EDTVEDVTFCPSSAQEFC----SVGDDSCLILWDARVG-----TS--P--VIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                      ...|.+++|+|++ ++|+    +++.|+.|++||+++.     +.  +  ....+.+|...|.+++|+|..+.+|++++.
T Consensus        92 ~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           92 KFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             SSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            6789999999999 6677    8899999999998764     11  0  134556789999999999944899999999


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      ||.|++||+++      +..+....+|...|.+++|+|+|++ |++|+.||.|++||++. .........        ..
T Consensus       171 Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~~-~~~~~~~~~--------~~  234 (434)
T 2oit_A          171 DGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTL-QEKKVIPCP--------PF  234 (434)
T ss_dssp             TSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTTC-CEEEEECCC--------TT
T ss_pred             CCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccCC-cccccccCC--------cc
Confidence            99999999998      6666666778999999999999986 57999999999999982 211110000        00


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ....|...|.+++|++++.++++..+.|. .-.....+++|++..
T Consensus       235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg-~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          235 YESDHPVRVLDVLWIGTYVFAIVYAAADG-TLETSPDVVMALLPK  278 (434)
T ss_dssp             CCTTSCEEEEEEEEEETTEEEEEEEETTC-CSSSCCEEEEEECCC
T ss_pred             cCCCCceeEEEEEEecCceEEEEEccCCC-ccCCCCceEEEEecc
Confidence            00123448999999998877665443320 011123599999984

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=5.6e-23  Score=187.53  Aligned_cols=235  Identities=8%  Similarity=-0.019  Sum_probs=168.1

Q ss_pred             CCCcEEEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-
Q 016547           30 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-  107 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-  107 (387)
                      +..+|++++|+| +|+.||+++. ||++.||+++++            . ...+..|....+..+.|+|| +.+++++. 
T Consensus        20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g------------~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~   84 (582)
T 3o4h_A           20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG------------E-TVKLNREPINSVLDPHYGVG-RVILVRDVS   84 (582)
T ss_dssp             HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT------------E-EEECCSSCCSEECEECTTCS-EEEEEEECS
T ss_pred             hccchheeecCC-CCCeEEEEEccCCceeEEEEcCC------------C-cEeeecccccccccccCCCC-eEEEEeccC
Confidence            356799999999 8889998877 999999998665            2 33445555336889999999 77777664 


Q ss_pred             --CCeEEEEEcCC--CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          108 --DKSVVLWSIQD--HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       108 --d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                        +....+|.+..  ...                                       . ..+.. ...+...+|+|+++.
T Consensus        85 ~g~~~~~l~~~~~~~~g~---------------------------------------~-~~l~~-~~~~~~~~~s~dg~~  123 (582)
T 3o4h_A           85 KGAEQHALFKVNTSRPGE---------------------------------------E-QRLEA-VKPMRILSGVDTGEA  123 (582)
T ss_dssp             TTSCCEEEEEEETTSTTC---------------------------------------C-EECTT-SCSBEEEEEEECSSC
T ss_pred             CCCcceEEEEEeccCCCc---------------------------------------c-ccccC-CCCceeeeeCCCCCe
Confidence              55667776642  100                                       0 11111 122346688888855


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----CeEEEEEeccCCCCCCCCceEEe
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      .+++.+.++.+.+||+.+++  .. .+..+..  .+++|+| +|+++++++.+    +.|++||+.+      ++. ..+
T Consensus       124 ~~~~s~~~~~~~l~d~~~g~--~~-~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~------g~~-~~l  190 (582)
T 3o4h_A          124 VVFTGATEDRVALYALDGGG--LR-ELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSS------GGL-RVF  190 (582)
T ss_dssp             EEEEEECSSCEEEEEEETTE--EE-EEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTT------CCC-EEE
T ss_pred             EEEEecCCCCceEEEccCCc--EE-EeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCC------CCc-eEe
Confidence            55554455556699998876  22 2333333  8899999 99999988877    7899999886      444 467


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE--------E
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH--------W  329 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~  329 (387)
                      ..|...+..++|+|||+.| +++..++  .|++||+.....               . .+.+|...+..++        |
T Consensus       191 ~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          191 DSGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRDGSV---------------E-DLELPSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             CCSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTTCCE---------------E-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred             ecCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCCCcE---------------E-EccCCCcChhhhhhccccceeE
Confidence            7788899999999999975 4777888  899999987422               2 3456666666677        9


Q ss_pred             ccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          330 NASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       330 ~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +||| .++++++.|       |++++|++
T Consensus       254 spdg-~~~~~~~~~-------g~~~l~~~  274 (582)
T 3o4h_A          254 LPDG-RLAVVARRE-------GRSAVFID  274 (582)
T ss_dssp             CTTS-CEEEEEEET-------TEEEEEET
T ss_pred             cCCC-cEEEEEEcC-------CcEEEEEE
Confidence            9999 667655544       99999999

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=8e-23  Score=198.35  Aligned_cols=279  Identities=9%  Similarity=0.005  Sum_probs=203.0

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+.+|.+.+.++.|++ + .++++++.||.+.||.++...           .....+..|..  +...+|+|+|++|+++
T Consensus       198 ~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~--~~~~~~SpDG~~la~~  262 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDG-----------KDLRKHTSFTD--YYPRHLNTDGRRILFS  262 (1045)
T ss_dssp             EEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTS-----------CSCEECCCCCS--SCEEEEEESSSCEEEE
T ss_pred             ECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCC-----------CcceEecCCCC--cceeeEcCCCCEEEEE
Confidence            3468999999999998 5 777888889999999876431           23345555654  4678999999999988


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc-cCCCee
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-PSSAQE  184 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~  184 (387)
                      . ++.|.+|++...... ....                             ...........|...+.+++|+ |+| ..
T Consensus       263 ~-~~~i~~~d~~~~~l~-~l~~-----------------------------~~~~~~~~~~~~~~~v~~~~~S~pdG-~~  310 (1045)
T 1k32_A          263 K-GGSIYIFNPDTEKIE-KIEI-----------------------------GDLESPEDRIISIPSKFAEDFSPLDG-DL  310 (1045)
T ss_dssp             E-TTEEEEECTTTCCEE-ECCC-----------------------------CCCCBCCSEEEECGGGGEEEEEECGG-GC
T ss_pred             e-CCEEEEecCCceEee-eecc-----------------------------CcccccccccccccccceeeecCCCC-CE
Confidence            5 899999998432111 0000                             0000001122356678999999 999 66


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCC-CeeEEEecCCCCCeEEEeeCCCeEE-EEEeccCCCCCCCCceEEeccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVR-MFDRRNLTSNGVGSPINKFEGH  262 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~-~~d~~~~~~~~~~~~~~~~~~~  262 (387)
                      +++++ ++.|.+|++..++   ...+..|.. .+..++|+  +++.|+.++.++.+. +||+..      ++ ...+..|
T Consensus       311 la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~------~~-~~~l~~~  377 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT------GK-AEKFEEN  377 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTT------CC-EEECCCC
T ss_pred             EEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCC------CC-ceEecCC
Confidence            77766 7899999998765   334556777 88999999  788888888888888 888875      43 3444477


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecC
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      ...+..++|+|+|++ |++++.++.|++||+.+..               ......+|...+..++|+|+|++++++..+
T Consensus       378 ~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~---------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGK---------------PTVIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             CCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCC---------------EEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             ccceeeeEECCCCCE-EEEECCCCeEEEEECCCCc---------------eEEeccCCCCCccceEECCCCCeEEEEecC
Confidence            788999999999996 5688889999999998742               233344788899999999999988765432


Q ss_pred             C--CCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          343 D--CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       343 d--~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +  ...+..++.|++||+.      +++ +..+..|...+..++|+|
T Consensus       442 ~~~~~~~~~~~~i~l~d~~------~g~-~~~l~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          442 KHGETDGYVMQAIHVYDME------GRK-IFAATTENSHDYAPAFDA  481 (1045)
T ss_dssp             CSSTTCSCCEEEEEEEETT------TTE-EEECSCSSSBEEEEEECT
T ss_pred             ccccccCCCCCeEEEEECC------CCc-EEEeeCCCcccCCceEcC
Confidence            1  0012345799999998      555 667778888899999987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=6.2e-23  Score=192.28  Aligned_cols=280  Identities=10%  Similarity=0.005  Sum_probs=176.0

Q ss_pred             cEEEEEecCCCCcEEEEecCC---------CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           33 EVNRIRELPQNTKIVATHTDS---------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .|.+++|+| ++++|++++.+         +.|.+||+.+++..          .+....+|.. .+..++|+|||++|+
T Consensus        62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~l~~~~~~~~-~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ----------SLDPPEVSNA-KLQYAGWGPKGQQLI  129 (723)
T ss_dssp             TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE----------ECCCTTCCSC-CCSBCCBCSSTTCEE
T ss_pred             ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceE----------eccCCccccc-cccccEECCCCCEEE
Confidence            499999999 88999988764         78889999988310          0111123332 367899999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC---------CCCeEE
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH---------EDTVED  174 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~  174 (387)
                      .++. +.|.+||+.++.........       ..                       . ..+.++         ...+.+
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~~-------~~-----------------------~-~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVSTG-------KE-----------------------G-VIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECCC-------BT-----------------------T-TEEEEECCHHHHHTTSSSSEE
T ss_pred             EEEC-CeEEEEECCCCceEEEecCC-------CC-----------------------C-ceECcccceeEEEEeccCcce
Confidence            9885 79999999865332111000       00                       0 000011         123478


Q ss_pred             EEEccCCCeeEEEecCCC----------------------------------eEEEEEccCCCCceeEEeecc------C
Q 016547          175 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSPVIKVEKAH------D  214 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~------~  214 (387)
                      ++|+||| +.|++++.++                                  .|++||+.+++.  ...+..+      .
T Consensus       178 ~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          178 HWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLEMMPPDDPRMRE  254 (723)
T ss_dssp             EEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEECCCCCCGGGSS
T ss_pred             EEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEEeeCCccCCCcc
Confidence            9999999 6677665432                                  799999988762  2333332      5


Q ss_pred             CCeeEEEecCCCCCeEEEeeC----CCeEEEEEeccCCCCCCCCceEEecc-ccceE----EEEEEcCCCCeeEEE-ecC
Q 016547          215 ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEG-HSAAV----LCVQWSPDKSSVFGS-SAE  284 (387)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~ll~s-~~~  284 (387)
                      ..+..++|+| +++++++.+.    +..|++||+.+      ++....+.. +...+    ..++|+|+|+.|+.. +..
T Consensus       255 ~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          255 YYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             EEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             ceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence            6789999999 9998877654    35799999987      665555433 23333    378999999976654 556


Q ss_pred             CC------eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547          285 DG------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       285 d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      ++      .|.+||+...+..            .....+..+...+.. ++|+|+++.|++++.++     ..+.++||+
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~------------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~l~~  390 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSN------------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTED-----LPRRRQLYS  390 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSS------------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS-----CTTCCEEEE
T ss_pred             cCCCcceeEEEEEeccCCCCc------------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC-----CCcceEEEE
Confidence            77      5666773222210            001112222334444 69999999987644321     127899999


Q ss_pred             cCCCcccccchhhhhhhc---cCceEEEeeecC
Q 016547          358 MSDLIYRPQDEVLAELEK---FKAHVISCTSKP  387 (387)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~f~P  387 (387)
                      ++..    .+.....+..   |...+..++|+|
T Consensus       391 ~~~~----~~~~~~~l~~~~~~~~~~~~~~~sp  419 (723)
T 1xfd_A          391 ANTV----GNFNRQCLSCDLVENCTYFSASFSH  419 (723)
T ss_dssp             ECSS----TTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred             EeCC----CCCCcceecccccCCCCeEEEEECC
Confidence            8731    1112233332   567788888887

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=2.2e-21  Score=165.77  Aligned_cols=234  Identities=13%  Similarity=0.102  Sum_probs=172.8

Q ss_pred             ecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC--------ceEEEEECCC
Q 016547           28 IIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--------AEFALAMCPT   98 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~v~~~~~~~~   98 (387)
                      +.....+..++|+| +++ +++++..++.|.+||..++            +....+..+...        .+.++.|+|+
T Consensus        85 ~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  151 (353)
T 3vgz_A           85 IHNDLKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTG------------EVKGRLVLDDRKRTEEVRPLQPRELVADDA  151 (353)
T ss_dssp             EEESSCCCSEEEET-TTTEEEEEETTTTEEEEEETTTC------------CEEEEEESCCCCCCSSCCCCEEEEEEEETT
T ss_pred             EecCCCcceEEECC-CCCEEEEEecCCCEEEEEeCCCC------------eeEEEEecCCCccccccCCCCCceEEECCC
Confidence            34455688899999 555 6667777899999999988            444555544321        1578999999


Q ss_pred             CCEEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           99 EPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        99 ~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      ++++++++  .++.|.+||..++...                                        ..+..+...+.+++
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGGNIKLK----------------------------------------TAIQNTGKMSTGLA  191 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETTTTEEE----------------------------------------EEECCCCTTCCCCE
T ss_pred             CCEEEEEecCCCceEEEEcCCCCceE----------------------------------------EEecCCCCccceEE
Confidence            99877765  4789999999764322                                        23333444578899


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNG  251 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~  251 (387)
                      |+|++ ..+++++.++.|.+||+.+++  .......    +...+..++|+| +++++++++. ++.|.+||..+     
T Consensus       192 ~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~-----  262 (353)
T 3vgz_A          192 LDSEG-KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN-----  262 (353)
T ss_dssp             EETTT-TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT-----
T ss_pred             ECCCC-CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC-----
Confidence            99999 677788889999999998877  3333332    455678899999 8887666655 59999999988     


Q ss_pred             CCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                       ++.+..+.....  ..++|+|++++++++...++.|.+||+.+..               .+..+.. ...+.+++|+|
T Consensus       263 -~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---------------~~~~~~~-~~~~~~~~~s~  323 (353)
T 3vgz_A          263 -GNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK---------------VVKTFDT-PTHPNSLALSA  323 (353)
T ss_dssp             -CCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTE---------------EEEEEEC-CSEEEEEEECT
T ss_pred             -CcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCe---------------EEEEEec-CCCCCeEEEcC
Confidence             777777764332  5799999999888888789999999998742               2333332 34679999999


Q ss_pred             CCCeEEEEecC
Q 016547          332 SDPWTVVSVSD  342 (387)
Q Consensus       332 ~~~~l~~s~s~  342 (387)
                      ++++++++...
T Consensus       324 dg~~l~v~~~~  334 (353)
T 3vgz_A          324 DGKTLYVSVKQ  334 (353)
T ss_dssp             TSCEEEEEEEC
T ss_pred             CCCEEEEEEcc
Confidence            99988877654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=2.3e-22  Score=171.56  Aligned_cols=243  Identities=9%  Similarity=0.045  Sum_probs=166.7

Q ss_pred             EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEE
Q 016547           36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLW  114 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vw  114 (387)
                      .+++.+ ++.++++++.+++|.+||+.++            +....+..+....+..++|+|+++++ +++..++.|.+|
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~   70 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   70 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCC------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence            345666 8889999999999999999988            55555655441125689999999865 455678999999


Q ss_pred             EcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-C-----CCCeEEEEEccCCCeeEEEe
Q 016547          115 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-H-----EDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |+.++....                                        .+.. +     ...+..++|+|++ +.++++
T Consensus        71 d~~t~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~  109 (349)
T 1jmx_B           71 DLDTCKNTF----------------------------------------HANLSSVPGEVGRSMYSFAISPDG-KEVYAT  109 (349)
T ss_dssp             ETTTTEEEE----------------------------------------EEESCCSTTEEEECSSCEEECTTS-SEEEEE
T ss_pred             eCCCCcEEE----------------------------------------EEEcccccccccccccceEECCCC-CEEEEE
Confidence            997653221                                        1111 1     1236789999999 667776


Q ss_pred             cCC------------CeEEEEEccCCCCc-eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          189 GDD------------SCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       189 ~~d------------g~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +.+            +.|.+||+.+++.. ..... .+...+.+++|+| +++ +++++.  .|.+||..+      ++.
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~  178 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKY  178 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCE
T ss_pred             cccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------Cce
Confidence            654            89999999875421 12222 3445689999999 888 555443  499999877      444


Q ss_pred             eEEeccc--------------------------------------------------------------------cceEE
Q 016547          256 INKFEGH--------------------------------------------------------------------SAAVL  267 (387)
Q Consensus       256 ~~~~~~~--------------------------------------------------------------------~~~i~  267 (387)
                      +..+..+                                                                    ...+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (349)
T 1jmx_B          179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF  258 (349)
T ss_dssp             EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcce
Confidence            4333211                                                                    12356


Q ss_pred             EEEEcC-CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          268 CVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       268 ~~~~~~-~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .++|+| ++++++ ++  ++.|.+||+.+..               ....+. ....+.+++|+|+++++++        
T Consensus       259 ~~~~sp~dg~~l~-~~--~~~v~~~d~~~~~---------------~~~~~~-~~~~~~~~~~s~dg~~l~~--------  311 (349)
T 1jmx_B          259 TGLRSPKDPNQIY-GV--LNRLAKYDLKQRK---------------LIKAAN-LDHTYYCVAFDKKGDKLYL--------  311 (349)
T ss_dssp             EEEECSSCTTEEE-EE--ESEEEEEETTTTE---------------EEEEEE-CSSCCCEEEECSSSSCEEE--------
T ss_pred             eeEecCCCCCEEE-EE--cCeEEEEECccCe---------------EEEEEc-CCCCccceEECCCCCEEEE--------
Confidence            778889 999755 44  8899999998742               222222 2345789999999998884        


Q ss_pred             CCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          347 TGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       347 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      ++.++.|++||+.      +++.+..+...
T Consensus       312 ~~~~~~v~v~d~~------~~~~~~~~~~~  335 (349)
T 1jmx_B          312 GGTFNDLAVFNPD------TLEKVKNIKLP  335 (349)
T ss_dssp             ESBSSEEEEEETT------TTEEEEEEECS
T ss_pred             ecCCCeEEEEecc------ccceeeeeecC
Confidence            3445999999998      56666665433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=6e-22  Score=168.15  Aligned_cols=244  Identities=12%  Similarity=0.091  Sum_probs=167.4

Q ss_pred             cEEEEEecCCCC-cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC----CCceEEEEECCCCCEEEEec-
Q 016547           33 EVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPTEPYVLSGG-  106 (387)
Q Consensus        33 ~v~~i~~~~~~~-~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~~~~~~~l~s~~-  106 (387)
                      .+.+++|+| ++ .+++++..++.|.+||+.++            +....+....    ...+..++|+|+|++|++++ 
T Consensus        35 ~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  101 (337)
T 1pby_B           35 TPMVPMVAP-GGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CCCCEEECT-TSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CccceEEcC-CCCEEEEEeCCCCeEEEEECCCC------------CeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence            588999999 55 55677777899999999887            4444343211    01246899999999998885 


Q ss_pred             -----------CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547          107 -----------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus       107 -----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                                 .++.|.+||+.++...                                        ..+.. ...+.++
T Consensus       102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~  140 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVALYDAETLSRR----------------------------------------KAFEA-PRQITML  140 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEE----------------------------------------EEEEC-CSSCCCE
T ss_pred             ccccccccccccCceEEEEECCCCcEE----------------------------------------EEEeC-CCCccee
Confidence                       5799999999754321                                        12222 3457788


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-C-----------------
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N-----------------  237 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g-----------------  237 (387)
                      +|+|++ +.++++  ++.|.+||+.+++  ....+..+. ....+.|+| ++..++..+.+ +                 
T Consensus       141 ~~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  213 (337)
T 1pby_B          141 AWARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQS-WEAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPAD  213 (337)
T ss_dssp             EECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTT-TTTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred             EECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeeccc-cCCCceeCC-CccEEeeeccCCCceeeeeecccccccccc
Confidence            999999 556666  6889999998876  344443332 112337888 77766554433 2                 


Q ss_pred             ------eEEEEEeccCCCCCCCCce-EEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCC
Q 016547          238 ------SVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  310 (387)
Q Consensus       238 ------~i~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  310 (387)
                            .|.+||+.+      ++.. ..+..+...+.+++|+|++++++ ++  ++.|.+||+....             
T Consensus       214 ~~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~~-------------  271 (337)
T 1pby_B          214 PTAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKNA-------------  271 (337)
T ss_dssp             GGGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTTE-------------
T ss_pred             ccccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCCc-------------
Confidence                  468899887      4442 33445666788999999999765 44  7899999998742             


Q ss_pred             ceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          311 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                        ....+. ....+.+++|+|+++++++        ++.|+.|++||+.      +++.+..+..+
T Consensus       272 --~~~~~~-~~~~~~~~~~s~dg~~l~~--------~~~~~~i~v~d~~------~~~~~~~~~~~  320 (337)
T 1pby_B          272 --SIKRVP-LPHSYYSVNVSTDGSTVWL--------GGALGDLAAYDAE------TLEKKGQVDLP  320 (337)
T ss_dssp             --EEEEEE-CSSCCCEEEECTTSCEEEE--------ESBSSEEEEEETT------TCCEEEEEECG
T ss_pred             --Ccceec-CCCceeeEEECCCCCEEEE--------EcCCCcEEEEECc------CCcEEEEEEcC
Confidence              222222 2346789999999998884        3445999999998      56666655443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=7.7e-21  Score=163.01  Aligned_cols=254  Identities=12%  Similarity=0.067  Sum_probs=165.2

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEecc-CCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE--EEEec
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE-AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--VLSGG  106 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~--l~s~~  106 (387)
                      ....+..++|+| ++++|++++.+ .|.+|++. ++            +..........+....++|+|+|++  +++++
T Consensus        38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g------------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~  103 (365)
T 1jof_A           38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPT------------EIVHEASHPIGGHPRANDADTNTRAIFLLAAK  103 (365)
T ss_dssp             TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETT------------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred             CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCC------------CEEEeeEeecCCCCccEEECCCCCEEEEEEec
Confidence            445788999999 88888888877 99999997 55            2222221111112346899999994  55654


Q ss_pred             -------------CCCeEEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCC
Q 016547          107 -------------KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDT  171 (387)
Q Consensus       107 -------------~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  171 (387)
                                   .++++.+|++.. +....                                     .+..+ ..+...
T Consensus       104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~-------------------------------------~~~~~~~~~~~~  146 (365)
T 1jof_A          104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEK-------------------------------------NVQNYEYQENTG  146 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEEE-------------------------------------EEEEEECCTTCC
T ss_pred             CCcceeccceeecCCceEEEEccCCCCcCcc-------------------------------------eEeeEEeCCCCc
Confidence                         689999999963 21100                                     00111 124567


Q ss_pred             eEEEEEccCCCeeEEEe-cCCCeEEEEEcc-CCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEecc
Q 016547          172 VEDVTFCPSSAQEFCSV-GDDSCLILWDAR-VGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRN  246 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~  246 (387)
                      +.+++|+|+| ++++++ ..++.|.+||+. +++........  .+...+..++|+| +++++++++. ++.|.+|++..
T Consensus       147 ~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          147 IHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence            8999999999 555554 457899999998 56522222222  2456789999999 9988887775 78999998763


Q ss_pred             CCCCCCCCce---EEec-------cccc------eEEEEE-EcCCCCeeEEEecCCC-----eEEEEeCCCCCceeccCC
Q 016547          247 LTSNGVGSPI---NKFE-------GHSA------AVLCVQ-WSPDKSSVFGSSAEDG-----LLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       247 ~~~~~~~~~~---~~~~-------~~~~------~i~~~~-~~~~~~~ll~s~~~d~-----~i~vwd~~~~~~~~~~~~  304 (387)
                      ..    ++..   ..+.       +|..      .+..++ |+|+|++|+++...+.     .|.+|++...++.     
T Consensus       225 ~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-----  295 (365)
T 1jof_A          225 AT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-----  295 (365)
T ss_dssp             TT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----
T ss_pred             CC----CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----
Confidence            11    3321   1121       1222      588999 9999998765543333     8999999632221     


Q ss_pred             CCCCCCceeee-eeccCCCCeeEEEEcc---CCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          305 RTTNYPAGLFF-QHAGHRDKVVDFHWNA---SDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       305 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                             ..+. ....+...+..++|+|   ++++++++..+       ++.|++|+++
T Consensus       296 -------~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------~~~v~v~~~~  340 (365)
T 1jof_A          296 -------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------EGWLEIYRWK  340 (365)
T ss_dssp             -------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------SCEEEEEEEE
T ss_pred             -------EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-------CCeEEEEEEc
Confidence                   1111 1233445677899999   89998864333       3899999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=6.9e-21  Score=162.36  Aligned_cols=258  Identities=11%  Similarity=0.115  Sum_probs=165.9

Q ss_pred             CCCcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEecC---CCeEEEEEcCCCcCccccCC
Q 016547           52 DSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDP  127 (387)
Q Consensus        52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~  127 (387)
                      .++.|.+|+++....          +... ....+.. ....++|+|+|+ |++++.   ++.|.+|++.++..      
T Consensus        14 ~~~~i~v~~~d~~tg----------~~~~~~~~~~~~-~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------   75 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK----------TLTNDGLLAATQ-NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------   75 (347)
T ss_dssp             SCCEEEEEEEETTTT----------EEEEEEEEEECS-CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------
T ss_pred             CCCCEEEEEEcCCCC----------eEEEeeeeeccC-CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------
Confidence            356788888765310          1111 2223333 356899999999 555543   68999999965321      


Q ss_pred             CcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-CCCeEEEEEccC-CCCc
Q 016547          128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARV-GTSP  205 (387)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~  205 (387)
                                                      +.+..+..+...+..++|+|++ +++++++ .++.|.+||+.. +...
T Consensus        76 --------------------------------~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           76 --------------------------------HKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             --------------------------------EEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             --------------------------------EEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCee
Confidence                                            1112233456678899999999 5455554 789999999964 2311


Q ss_pred             eeEEeec---------cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc--eEEecc-ccceEEEEEEcC
Q 016547          206 VIKVEKA---------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKFEG-HSAAVLCVQWSP  273 (387)
Q Consensus       206 ~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~-~~~~i~~~~~~~  273 (387)
                      .......         ....+.+++|+| +++++++...++.|.+||+...     ++.  +..+.. ....+..++|+|
T Consensus       123 ~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~-----g~~~~~~~~~~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          123 LTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDA-----GQLSEQSVLTMEAGFGPRHLVFSP  196 (347)
T ss_dssp             EEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTT-----SCEEEEEEEECCTTCCEEEEEECT
T ss_pred             ecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCC-----CcEEEeeeEEcCCCCCCceEEECC
Confidence            2222211         122478899999 8887777777899999999831     322  222222 233678899999


Q ss_pred             CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC------CCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH------RDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      +|++++++...++.|.+|++.......           .........      ...+..++|+|+|++++++...+    
T Consensus       197 dg~~l~v~~~~~~~v~v~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----  261 (347)
T 3hfq_A          197 DGQYAFLAGELSSQIASLKYDTQTGAF-----------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----  261 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEE-----------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCce-----------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----
Confidence            999888778889999999988521111           111111111      13588999999999988765544    


Q ss_pred             CCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          348 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       348 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                         +.|.+|++...   ...+.+..+..+...+..++|+|
T Consensus       262 ---~~v~v~~~~~~---g~~~~~~~~~~~~~~~~~~~~sp  295 (347)
T 3hfq_A          262 ---NTLAVFAVTAD---GHLTLIQQISTEGDFPRDFDLDP  295 (347)
T ss_dssp             ---TEEEEEEECGG---GCEEEEEEEECSSSCCCEEEECT
T ss_pred             ---CEEEEEEECCC---CcEEEeEEEecCCCCcCeEEECC
Confidence               89999999721   01234455555666788888887

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=2.2e-22  Score=188.37  Aligned_cols=243  Identities=9%  Similarity=0.111  Sum_probs=163.4

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--CceEEEEECCCCCEEEEecC-----
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGK-----  107 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~v~~~~~~~~~~~l~s~~~-----  107 (387)
                      ..++|+| ++++++++ .|++|++||+.++            +....+.+|..  ..+.+++|||||++|++++.     
T Consensus        19 ~~~~~s~-dg~~~~~~-~d~~i~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           19 FFPNWIS-GQEYLHQS-ADNNIVLYNIETG------------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCCEESS-SSEEEEEC-TTSCEEEEESSSC------------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred             CccEECC-CCeEEEEc-CCCCEEEEEcCCC------------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeE
Confidence            3678999 77776665 5999999999998            55555555532  02789999999999998876     


Q ss_pred             ----CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          108 ----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       108 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                          ++.|++||+.++.....                                      ..+   ...+..++|+||| +
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~--------------------------------------~~l---~~~~~~~~~SPDG-~  122 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRG--------------------------------------NEL---PRPIQYLCWSPVG-S  122 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCS--------------------------------------SCC---CSSBCCEEECSST-T
T ss_pred             EeecceEEEEEECCCCccccc--------------------------------------eec---CcccccceECCCC-C
Confidence                78999999986532100                                      001   2457889999999 6


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCC-----------------eeEEEecCCCCCeEEEeeCCC---------
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-----------------LHCVDWNPLDDNLILTGSADN---------  237 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~dg---------  237 (387)
                      .|+.+. ++.|++||+.+++...+ ...++...                 ..+++|+| ++++|++++.|.         
T Consensus       123 ~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          123 KLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             CEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEE
T ss_pred             EEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEee
Confidence            677764 78999999988763211 11222221                 25899999 999999988652         


Q ss_pred             -------------------------eEEEEEeccCCCCCCCCce--------EEeccccceEEEEEEcCCCCeeEEEecC
Q 016547          238 -------------------------SVRMFDRRNLTSNGVGSPI--------NKFEGHSAAVLCVQWSPDKSSVFGSSAE  284 (387)
Q Consensus       238 -------------------------~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~ll~s~~~  284 (387)
                                               .|++||+.+      ++..        ..+.+|...+..++|+||++ ++++...
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~  272 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLK  272 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEE
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEec
Confidence                                     788999886      4432        12345788899999999976 4555332


Q ss_pred             --C--CeEEEEe----CCCCCceeccCCCCCCCCceeee-eeccCCCCee-----EEEEccCCCeEEEEecCCCCCCCCC
Q 016547          285 --D--GLLNIWD----YEKVGKKVEQGPRTTNYPAGLFF-QHAGHRDKVV-----DFHWNASDPWTVVSVSDDCDSTGGG  350 (387)
Q Consensus       285 --d--~~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~-----~~~~~~~~~~l~~s~s~d~~tg~~d  350 (387)
                        +  ..|.+||    +.++...            .+.. ...+|...+.     .+.|+|+|+.+++..++.    +..
T Consensus       273 ~~~~~~~l~~~d~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~g~  336 (719)
T 1z68_A          273 RVQNVSVLSICDFREDWQTWDCP------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK----DGY  336 (719)
T ss_dssp             SSTTEEEEEEEEECSSSSSEECC------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT----TSC
T ss_pred             cccCeEEEEEEcccCCCCCCceE------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEcc----CCc
Confidence              2  3488888    5543111            0110 0135666666     889999999877644322    123


Q ss_pred             ceEEEEecC
Q 016547          351 GTLQIWRMS  359 (387)
Q Consensus       351 g~i~iw~~~  359 (387)
                      ..|.+|++.
T Consensus       337 ~~l~~~~~~  345 (719)
T 1z68_A          337 KHIHYIKDT  345 (719)
T ss_dssp             EEEEEESSC
T ss_pred             eEEEEEECC
Confidence            577778876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2e-21  Score=188.52  Aligned_cols=277  Identities=10%  Similarity=-0.001  Sum_probs=198.4

Q ss_pred             CCCcEEEEEec-CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           30 HPGEVNRIREL-PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~-~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      |.+.+.+++|+ | +++.|++++ ++.|.+|++.++            . ...+..|....+..++|+ +|+.|++++.+
T Consensus       294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~------------~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~  357 (1045)
T 1k32_A          294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGT------------Y-VLKVPEPLRIRYVRRGGD-TKVAFIHGTRE  357 (1045)
T ss_dssp             ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSS------------B-EEECSCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred             cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCC------------c-eEEccCCCcceEEeeeEc-CCCeEEEEECC
Confidence            55679999999 8 888888877 789999998876            2 233455554358899999 99999998888


Q ss_pred             CeEE-EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          109 KSVV-LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       109 ~~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      +.+. +|++..+..                                         ..+..|...+..++|+|++ +.|++
T Consensus       358 ~~l~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~SpDG-~~la~  395 (1045)
T 1k32_A          358 GDFLGIYDYRTGKA-----------------------------------------EKFEENLGNVFAMGVDRNG-KFAVV  395 (1045)
T ss_dssp             EEEEEEEETTTCCE-----------------------------------------EECCCCCCSEEEEEECTTS-SEEEE
T ss_pred             CceEEEEECCCCCc-----------------------------------------eEecCCccceeeeEECCCC-CEEEE
Confidence            8888 888764321                                         2233677889999999999 78999


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC----------eEEEEEeccCCCCCCCCceE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----------SVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----------~i~~~d~~~~~~~~~~~~~~  257 (387)
                      ++.++.|++||+.+++  .......|...+.+++|+| ++++|++++.++          .|++||+.+      ++ +.
T Consensus       396 ~~~~~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------g~-~~  465 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RK-IF  465 (1045)
T ss_dssp             EETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TE-EE
T ss_pred             ECCCCeEEEEECCCCc--eEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCC------Cc-EE
Confidence            9999999999999887  4455557888999999999 999998887754          899999986      55 67


Q ss_pred             EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC--------C--------------------CCCCC
Q 016547          258 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--------P--------------------RTTNY  309 (387)
Q Consensus       258 ~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~--------~--------------------~~~~~  309 (387)
                      .+..|...+..++|+|+|++|+ .++.++...+|+...........        .                    .....
T Consensus       466 ~l~~~~~~~~~~~~spdG~~l~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g  544 (1045)
T 1k32_A          466 AATTENSHDYAPAFDADSKNLY-YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND  544 (1045)
T ss_dssp             ECSCSSSBEEEEEECTTSCEEE-EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred             EeeCCCcccCCceEcCCCCEEE-EEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence            7777888899999999999754 67777777788765322100000        0                    00000


Q ss_pred             CceeeeeeccCCCCeeEEEEccCCCeEEEEec-------CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEE
Q 016547          310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS-------DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  382 (387)
Q Consensus       310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s-------~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  382 (387)
                      ....+..+..|.+.+..++++|++..+++...       ..  +.+.+..|.+||+.      +++. ..+.   ..+.+
T Consensus       545 ~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~--~~~~~~~l~~~d~~------~~~~-~~l~---~~v~~  612 (1045)
T 1k32_A          545 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ--GAPEKGVLLKYDVK------TRKV-TEVK---NNLTD  612 (1045)
T ss_dssp             GGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH--CCCCCEEEEEEETT------TCCE-EEEE---EEEEE
T ss_pred             HhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccc--ccCCCceEEEEECC------CCcE-EEee---cCcce
Confidence            01123344557788999999999976664110       00  12345788888888      3432 2222   66788


Q ss_pred             eeecC
Q 016547          383 CTSKP  387 (387)
Q Consensus       383 ~~f~P  387 (387)
                      ++|||
T Consensus       613 ~~~S~  617 (1045)
T 1k32_A          613 LRLSA  617 (1045)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            88887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=2.7e-21  Score=164.08  Aligned_cols=246  Identities=12%  Similarity=0.108  Sum_probs=172.8

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-ceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ++|++++.++.|.+||+.++            +....+...... .+..++|+|+++++ +++..++.|.+||+.++...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             cEEEEcCCCCeEEEEECCCC------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence            57899999999999999887            445555433211 25689999999865 55667899999999765322


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-C----CCCCeEEEEEccCCCeeEEEec--------
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G----HEDTVEDVTFCPSSAQEFCSVG--------  189 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~~l~~~~--------  189 (387)
                      .                                        .+. .    +...+.+++|+|++ +.++++.        
T Consensus        70 ~----------------------------------------~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           70 G----------------------------------------RIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELT  108 (337)
T ss_dssp             E----------------------------------------EEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSS
T ss_pred             e----------------------------------------eEEcCCcccccccccceEECCCC-CEEEEEecccccccc
Confidence            1                                        111 1    12256789999998 5666664        


Q ss_pred             ----CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          190 ----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       190 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                          .++.|.+||+.+++  ....+. ....+..++|+| ++++++++  ++.|.+||+.+      ++.+..+..+...
T Consensus       109 ~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~------~~~~~~~~~~~~~  176 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEA------GTLVEDKPIQSWE  176 (337)
T ss_dssp             CEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTT------TEEEEEECSTTTT
T ss_pred             cccccCceEEEEECCCCc--EEEEEe-CCCCcceeEECC-CCCEEEEe--CCeEEEEECCC------CcEeeeeeccccC
Confidence                57999999998766  334443 355688999999 89888887  68899999988      6666666543310


Q ss_pred             EEEEEEcCCCCeeEEEecCCC-----------------------eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDG-----------------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  322 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (387)
                       ..+.|+|++..+++++..++                       .|.+||+......              ...+..+..
T Consensus       177 -~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~  241 (337)
T 1pby_B          177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--------------MREVRIMDV  241 (337)
T ss_dssp             -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--------------EEEEEECSS
T ss_pred             -CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--------------EeecCCCCC
Confidence             13378999987765554444                       3688998874221              223345666


Q ss_pred             CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      .+.+++|+|++++++++          ++.|++||+.      +++.+..+.. ...+.+++|+|
T Consensus       242 ~~~~~~~s~dg~~l~~~----------~~~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~  289 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA----------YNVLESFDLE------KNASIKRVPL-PHSYYSVNVST  289 (337)
T ss_dssp             CEEEEEECTTSSEEEEE----------ESEEEEEETT------TTEEEEEEEC-SSCCCEEEECT
T ss_pred             ceeeEEECCCCCEEEEe----------CCeEEEEECC------CCcCcceecC-CCceeeEEECC
Confidence            78899999999988853          3899999998      5666555543 34567788876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=3.1e-19  Score=152.98  Aligned_cols=268  Identities=10%  Similarity=0.047  Sum_probs=164.9

Q ss_pred             cEEEEe----cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC----CeEEEEEc
Q 016547           45 KIVATH----TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD----KSVVLWSI  116 (387)
Q Consensus        45 ~~l~t~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~  116 (387)
                      .++..|    +.++.|.+|+++.....        .......  +.. ....++|+|+|++|++++.+    +.|.+|++
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~--------~~~~~~~--~~~-~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~   82 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGE--------SLPLSDA--EVA-NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF   82 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCC--------EEEEEEE--ECS-CCCSEEECTTSSEEEEEECCSSTTCEEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCC--------EEEeecc--cCC-CCceEEECCCCCEEEEEEccCCCCCcEEEEEE
Confidence            345555    34678999987643100        0112222  433 45789999999999998875    79999998


Q ss_pred             CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEE
Q 016547          117 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  196 (387)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  196 (387)
                      +....                                    ....+.....+......+++  ++..++++...++.|.+
T Consensus        83 ~~~~g------------------------------------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           83 DKEKG------------------------------------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ETTTT------------------------------------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             eCCCC------------------------------------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            74210                                    00111222334455677777  66445555557899999


Q ss_pred             EEccCCCCc-eeEE---eec--------cCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCC----C-c---
Q 016547          197 WDARVGTSP-VIKV---EKA--------HDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVG----S-P---  255 (387)
Q Consensus       197 wd~~~~~~~-~~~~---~~~--------~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~----~-~---  255 (387)
                      |++...... ....   ..+        +...+.+++|+| +++++++++ .++.|.+|++....    +    + .   
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~----~~~~~~~l~~~  199 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNA----NADNKEKFLTK  199 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTC----CTTTCCCCEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCC----Ccccccceeec
Confidence            999754311 1111   111        123457899999 888666555 48999999998632    1    1 1   


Q ss_pred             ---eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          256 ---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       256 ---~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                         ......+...+..++|+|+|++++++...++.|.+||+........          ..+.....+......++|+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~----------~~~~~~~~~~~~~~~i~~spd  269 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI----------QTVAADTVNAQGSGDIHLSPD  269 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE----------EEEESCSSCCCCEEEEEECTT
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe----------EEEecCCCCCCCcccEEECCC
Confidence               1112234456789999999998776776799999999985321100          112222334456789999999


Q ss_pred             CCeEEEEecCCCCCCCCCceEEEEecCCCcccccch--hhhhhhccCceEEEeeecC
Q 016547          333 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE--VLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~v~~~~f~P  387 (387)
                      +++++++...      .++.|.+|+++..    +++  .+..+.. ...+.+++|+|
T Consensus       270 g~~l~v~~~~------~~~~i~v~~~~~~----~g~~~~~~~~~~-g~~~~~~~~sp  315 (361)
T 3scy_A          270 GKYLYASNRL------KADGVAIFKVDET----NGTLTKVGYQLT-GIHPRNFIITP  315 (361)
T ss_dssp             SSEEEEEECS------SSCEEEEEEECTT----TCCEEEEEEEEC-SSCCCEEEECT
T ss_pred             CCEEEEECCC------CCCEEEEEEEcCC----CCcEEEeeEecC-CCCCceEEECC
Confidence            9998875543      0389999999621    222  3333333 45677788876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=9.3e-20  Score=170.66  Aligned_cols=254  Identities=9%  Similarity=0.122  Sum_probs=166.8

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC----ceEEEEECCCCCEEEEec
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----AEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----~v~~~~~~~~~~~l~s~~  106 (387)
                      ......++|+| ++++++++  ||+|++||+.++            +....+.+|...    ....+.|||||++|+.++
T Consensus        16 ~~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~   80 (740)
T 4a5s_A           16 RLKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYG------------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEY   80 (740)
T ss_dssp             CCCCCCEEECS-SSEEEEEE--TTEEEEEETTTC------------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred             cccccccEECC-CCcEEEEc--CCcEEEEECCCC------------ceEEEEechhhhhhcccccceEECCCCCEEEEEE
Confidence            34567899999 88899886  899999999998            455556666532    123488999999999988


Q ss_pred             CC---------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547          107 KD---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus       107 ~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      .+         +.+.+||+.++..                                         ..+..|...+...+|
T Consensus        81 ~~~~~~r~~~~~~~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~  119 (740)
T 4a5s_A           81 NYVKQWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTW  119 (740)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEE
T ss_pred             CCeeeEEEccceEEEEEECCCCcE-----------------------------------------EEcccCCCcceeeEE
Confidence            76         5667999986532                                         223456678999999


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCC-----------------eeEEEecCCCCCeEEEeeCCC---
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD-----------------LHCVDWNPLDDNLILTGSADN---  237 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~dg---  237 (387)
                      +||| +.|+.+ .++.|++||+.+++... ....++...                 ...+.|+| +++.|+.++.|.   
T Consensus       120 SPdG-~~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v  195 (740)
T 4a5s_A          120 SPVG-HKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEV  195 (740)
T ss_dssp             CSST-TCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTC
T ss_pred             CCCC-CEEEEE-ECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCC
Confidence            9999 667666 46899999998876221 112222222                 23589999 999999876432   


Q ss_pred             ---------------------------------eEEEEEecc---CCCCCCCCceEEec------cccceEEEEEEcCCC
Q 016547          238 ---------------------------------SVRMFDRRN---LTSNGVGSPINKFE------GHSAAVLCVQWSPDK  275 (387)
Q Consensus       238 ---------------------------------~i~~~d~~~---~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~  275 (387)
                                                       .|++||+.+   ..    ......+.      +|...+..++|+|||
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~wspdg  271 (740)
T 4a5s_A          196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDHYLCDVTWATQE  271 (740)
T ss_dssp             CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred             ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence                                             355566553   21    00233343      277789999999999


Q ss_pred             CeeEEEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee-----EEEEccCCCeEEEEecCCCCCC
Q 016547          276 SSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV-----DFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       276 ~~ll~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      +.++...   +.+..|.+||+.++......      .. .......+|...|.     ..+|+|||+.++...+++  . 
T Consensus       272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~------~~-~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~--~-  341 (740)
T 4a5s_A          272 RISLQWLRRIQNYSVMDICDYDESSGRWNC------LV-ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE--E-  341 (740)
T ss_dssp             EEEEEEEESSTTEEEEEEEEEETTTTEEEE------CG-GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT--T-
T ss_pred             eEEEEEeCCCCCEEEEEEEECCCCccccce------eE-EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC--C-
Confidence            8543332   23447999999875310000      00 00001134555544     789999999887555543  2 


Q ss_pred             CCCceEEEEecC
Q 016547          348 GGGGTLQIWRMS  359 (387)
Q Consensus       348 ~~dg~i~iw~~~  359 (387)
                       ....|++|++.
T Consensus       342 -G~~~l~~~~~~  352 (740)
T 4a5s_A          342 -GYRHICYFQID  352 (740)
T ss_dssp             -SCEEEEEEETT
T ss_pred             -CceEEEEEECC
Confidence             24688888887

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=5.9e-20  Score=159.10  Aligned_cols=277  Identities=13%  Similarity=0.111  Sum_probs=171.3

Q ss_pred             eeecCCCcEEE-----EEecCCCCcEEEEecC-CC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           26 KTIIHPGEVNR-----IRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        26 ~~~~h~~~v~~-----i~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      ++..|.+....     .+|+| +++.|+.++. +|  .|.+||+.++            +......++.. .+....|+|
T Consensus        25 ~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g------------~~~~lt~~~~~-~~~~~~~sp   90 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQ------------VATQLTEGRGD-NTFGGFLSP   90 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTC------------EEEECCCSSCB-CSSSCEECT
T ss_pred             EecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCC------------ceEEeeeCCCC-CccceEEcC
Confidence            34456666666     78999 8888877776 67  4888888877            33334444443 344678999


Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE-
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT-  176 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  176 (387)
                      ||+.|+.++.++.|.+||+.++...                                        ..+..+...+.... 
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~----------------------------------------~~~~~~~~~~~~~~~  130 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEEN----------------------------------------VVYQVPAEWVGYGTW  130 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEE----------------------------------------EEEECCTTEEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcce----------------------------------------eeeechhhcccccce
Confidence            9999999999999999999864321                                        22333344443333 


Q ss_pred             -EccCCCeeEEE----------------------ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547          177 -FCPSSAQEFCS----------------------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  233 (387)
Q Consensus       177 -~~~~~~~~l~~----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (387)
                       ++|++ .+++.                      ...+..|.+||+.+++   ...+..+...+..++|+|.+++.|+..
T Consensus       131 ~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~  206 (388)
T 3pe7_A          131 VANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFC  206 (388)
T ss_dssp             EECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred             eECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEE
Confidence             47887 55542                      2345789999999887   344445667789999999556777766


Q ss_pred             eCC------CeEEEEEeccCCCCCCCCceEEecccc--ceEEEEEEcCCCCeeEEEecCCC----eEEEEeCCCCCceec
Q 016547          234 SAD------NSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVE  301 (387)
Q Consensus       234 ~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ll~s~~~d~----~i~vwd~~~~~~~~~  301 (387)
                      ..+      ..|.++|...       .....+..+.  ..+..++|+|+|+.|+..+..++    .|++||+......  
T Consensus       207 ~~~~~~~~~~~l~~~d~~~-------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--  277 (388)
T 3pe7_A          207 HEGPHDLVDARMWLINEDG-------TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR--  277 (388)
T ss_dssp             ECSCTTTSSCSEEEEETTS-------CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE--
T ss_pred             EecCCCCCcceEEEEeCCC-------CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE--
Confidence            653      2677777654       3334444343  36788999999997644443222    3999999875321  


Q ss_pred             cCCCCCCCCceeeeeeccCCC---CeeEEEEccCCCeEEEEecCCC-CCCCCCceEEEEecCCCcccccchhhhhhhccC
Q 016547          302 QGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWTVVSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  377 (387)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~s~s~d~-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  377 (387)
                                 .+..+.++..   ....++|+|+|+.++++..+.. .+...+..|++||+.      +++. ..+..+.
T Consensus       278 -----------~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~------~~~~-~~l~~~~  339 (388)
T 3pe7_A          278 -----------QLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK------NGTQ-HRVARHD  339 (388)
T ss_dssp             -----------EEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT------TTEE-EEEEECC
T ss_pred             -----------EEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc------CCce-EEecccc
Confidence                       1222222110   1223479999998886543210 011456799999998      3432 4444454


Q ss_pred             c-----------eEEEeeecC
Q 016547          378 A-----------HVISCTSKP  387 (387)
Q Consensus       378 ~-----------~v~~~~f~P  387 (387)
                      .           .+..++|+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~sp  360 (388)
T 3pe7_A          340 TSWKVFEGDRQVTHPHPSFTP  360 (388)
T ss_dssp             CCCCCBTTBSSTTCCCCEECT
T ss_pred             CcccccccccccCCCCccCCC
Confidence            4           466677776

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=4.9e-18  Score=143.29  Aligned_cols=250  Identities=13%  Similarity=0.129  Sum_probs=173.5

Q ss_pred             CCcEEEEEecCCCCcEEEEecCC------------------------CcEEEEeccCCCCcccccCCCCCCCeEEEeccC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDS------------------------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ   86 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~   86 (387)
                      -+.+.++++.| +++++++...+                        ++|.+||..++            +....+....
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~~   89 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------EILQSSGKNL   89 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------CEEEEECTTT
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------eEEeccCCCc
Confidence            57799999999 78888888777                        47999998877            3333333222


Q ss_pred             CCceEEEEECCCCCEEEEecCCCeEEEEEcCCCc-CccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee
Q 016547           87 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY  165 (387)
Q Consensus        87 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (387)
                      -.....++++++|+++++...++.|++||..... .........                               ....-
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-------------------------------~~g~~  138 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-------------------------------QPGSD  138 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-------------------------------BCCCS
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-------------------------------CCCCC
Confidence            1246799999999988888889999999976431 111000000                               00000


Q ss_pred             cCCCCCeEEEEEcc-CCCeeEEEec-CCCeEEEEEccCCCCceeEEeecc----------CCCeeEEEecCCC-CCeEEE
Q 016547          166 NGHEDTVEDVTFCP-SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPLD-DNLILT  232 (387)
Q Consensus       166 ~~~~~~v~~~~~~~-~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~-~~~l~~  232 (387)
                      ..+......++++| ++ .++++.+ .++.|++||. .++  ....+...          -..+..++++| + +.++++
T Consensus       139 ~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~  213 (329)
T 3fvz_A          139 QNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVA  213 (329)
T ss_dssp             TTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEE
T ss_pred             ccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEE
Confidence            23445688999999 55 7788876 6899999994 444  34433222          23488999999 6 788888


Q ss_pred             eeCCCeEEEEEeccCCCCCCCCceEEec--cccceEEEEEEcC------CCCeeEEEecCCCeEEEEeCCCCCceeccCC
Q 016547          233 GSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSP------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  304 (387)
Q Consensus       233 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~------~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~  304 (387)
                      ...++.|++||..+      ++.+..+.  .+...+..++|+|      ++. ++++...+..|++||+....       
T Consensus       214 d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~-------  279 (329)
T 3fvz_A          214 DRENGRIQCFKTDT------KEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGE-------  279 (329)
T ss_dssp             ETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCC-------
T ss_pred             ECCCCEEEEEECCC------CcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCe-------
Confidence            88899999999987      77777773  4566788999999      333 22233445689999988752       


Q ss_pred             CCCCCCceeeeee---ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          305 RTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       305 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                              .+..+   .++...+.+++++|+| .++++..       .+++|++|++.
T Consensus       280 --------~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~-------~~~~I~~~~~~  321 (329)
T 3fvz_A          280 --------IIDVFKPVRKHFDMPHDIVASEDG-TVYIGDA-------HTNTVWKFTLT  321 (329)
T ss_dssp             --------EEEEECCSSSCCSSEEEEEECTTS-EEEEEES-------SSCCEEEEEEE
T ss_pred             --------EEEEEcCCCCccCCeeEEEECCCC-CEEEEEC-------CCCEEEEEeCC
Confidence                    23333   3566778999999999 6666544       44899999987

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=3e-20  Score=173.93  Aligned_cols=280  Identities=14%  Similarity=0.099  Sum_probs=173.8

Q ss_pred             cEEEEEecCCCCcEEEEecC---------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           33 EVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      .|.+++|+| ++++|++++.         ++.|++||+++++....          ..+   .. .+..++|+|||++|+
T Consensus        61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----------~~l---~~-~~~~~~~SPDG~~la  125 (719)
T 1z68_A           61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----------NEL---PR-PIQYLCWSPVGSKLA  125 (719)
T ss_dssp             TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----------SCC---CS-SBCCEEECSSTTCEE
T ss_pred             ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc----------eec---Cc-ccccceECCCCCEEE
Confidence            389999999 8899988876         78999999998832100          011   12 467899999999999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCC---------eEE
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT---------VED  174 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~  174 (387)
                      .+. |+.|++|++.++........                               ......+.++...         ..+
T Consensus       126 ~~~-~~~i~~~~~~~g~~~~l~~~-------------------------------~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          126 YVY-QNNIYLKQRPGDPPFQITFN-------------------------------GRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             EEE-TTEEEEESSTTSCCEECCCC-------------------------------CBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             EEE-CCeEEEEeCCCCCcEEEecC-------------------------------CCcCCeEcccccceeeeecccCccc
Confidence            986 78999999976543211000                               0000122233322         258


Q ss_pred             EEEccCCCeeEEEecCCC----------------------------------eEEEEEccCCCCc---ee---EEeeccC
Q 016547          175 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSP---VI---KVEKAHD  214 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~~---~~~~~~~  214 (387)
                      ++|+||| +.|++++.|.                                  .|++||+.+++..   .+   ..+..|.
T Consensus       174 ~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            9999999 6777766442                                  7889999876521   00   1123577


Q ss_pred             CCeeEEEecCCCCCeEEEeeCC----CeEEEEE----eccCCCCCCCCceEEe----ccccceEE-----EEEEcCCCCe
Q 016547          215 ADLHCVDWNPLDDNLILTGSAD----NSVRMFD----RRNLTSNGVGSPINKF----EGHSAAVL-----CVQWSPDKSS  277 (387)
Q Consensus       215 ~~i~~~~~~~~~~~~l~~~~~d----g~i~~~d----~~~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~  277 (387)
                      ..+..++|+| +++++++....    ..|.+||    ..+      ++....+    ..|...+.     .++|+|+|+.
T Consensus       253 ~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          253 YYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT------WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             EEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS------EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred             ceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC------CceEEEEecccccCCceEccccCCccEECCCCCe
Confidence            7899999999 78777764432    2488888    555      4433333    35666665     7899999996


Q ss_pred             eEE-EecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547          278 VFG-SSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  354 (387)
Q Consensus       278 ll~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~  354 (387)
                      ++. +...+|  .|.+||+....                ...+..+...+..+.++ +++.+++++...   ...++..+
T Consensus       326 l~~~~~~~~g~~~l~~~~~~~~~----------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~---~~~~~~~~  385 (719)
T 1z68_A          326 YYKIFSDKDGYKHIHYIKDTVEN----------------AIQITSGKWEAINIFRV-TQDSLFYSSNEF---EEYPGRRN  385 (719)
T ss_dssp             EEEEEECTTSCEEEEEESSCSTT----------------CEECSCSSSCEEEEEEE-CSSEEEEEESCG---GGCTTCBE
T ss_pred             EEEEEEccCCceEEEEEECCCCc----------------eEecccCceEEEEEEEE-eCCEEEEEEecC---CCCCceEE
Confidence            544 344555  46666765531                12234455567777777 888888765430   01247889


Q ss_pred             EEecCCCcccccchhhh-hhhccCceEEEeeecC
Q 016547          355 IWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  387 (387)
Q Consensus       355 iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~f~P  387 (387)
                      +|.+.........+.+. .+.+|...+..+.|+|
T Consensus       386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~  419 (719)
T 1z68_A          386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD  419 (719)
T ss_dssp             EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred             EEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence            99876210000002221 1333666677777775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=1.8e-17  Score=137.11  Aligned_cols=237  Identities=12%  Similarity=0.128  Sum_probs=166.2

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe------ccCCCceEEEEE-CCCCCE
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAM-CPTEPY  101 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~-~~~~~~  101 (387)
                      +|-..+.++++.+ +++++++...++.|.+||.+..             ....+.      ++.. .+..+++ .++++.
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~-------------~~~~~~~~~~~~~~~~-~p~~i~~~~~~g~l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDI   91 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCc-------------EEEEecccCCCccccc-CceEEEEEcCCCeE
Confidence            3456789999998 7888888888999999998733             222232      2223 4679999 567776


Q ss_pred             EEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEcc
Q 016547          102 VLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP  179 (387)
Q Consensus       102 l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~  179 (387)
                      +++... ++.|.+||.. +...                                        ..+ ..+...+.++++.|
T Consensus        92 ~v~~~~~~~~i~~~d~~-g~~~----------------------------------------~~~~~~~~~~~~~i~~~~  130 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQY-GQFV----------------------------------------RKFGATILQHPRGVTVDN  130 (286)
T ss_dssp             EEEECGGGCEEEEECTT-SCEE----------------------------------------EEECTTTCSCEEEEEECT
T ss_pred             EEEcCCCCCEEEEECCC-CcEE----------------------------------------EEecCccCCCceEEEEeC
Confidence            666643 7899999943 2211                                        111 12345688999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                      ++ +++++...++.|.+||... +  ....+.  .+...+..++++| +++++++...++.|++||..       ++.+.
T Consensus       131 ~g-~l~v~~~~~~~i~~~~~~g-~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~  198 (286)
T 1q7f_A          131 KG-RIIVVECKVMRVIIFDQNG-N--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLR  198 (286)
T ss_dssp             TS-CEEEEETTTTEEEEECTTS-C--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEE
T ss_pred             CC-CEEEEECCCCEEEEEcCCC-C--EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEE
Confidence            98 7888888889999999653 3  233332  3445789999999 88888888889999999975       55666


Q ss_pred             Eeccc--cceEEEEEEcCCCCeeEEEecCCC-eEEEEeCCCCCceeccCCCCCCCCceeeeeeccC--CCCeeEEEEccC
Q 016547          258 KFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNAS  332 (387)
Q Consensus       258 ~~~~~--~~~i~~~~~~~~~~~ll~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~  332 (387)
                      .+..+  ...+..++++++|. ++++...++ .|.+||....                .+..+..+  ...+.+++++|+
T Consensus       199 ~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~----------------~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ----------------LISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             EESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC----------------EEEEEEESSCCSCEEEEEEETT
T ss_pred             EEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCC----------------EEEEEcccCCCCcceeEEECCC
Confidence            66543  25688999999997 566776675 9999996431                12222222  234789999999


Q ss_pred             CCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          333 DPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +. ++++        +.|++|++|++.
T Consensus       262 g~-l~vs--------~~~~~v~v~~~~  279 (286)
T 1q7f_A          262 GS-VVLA--------SKDYRLYIYRYV  279 (286)
T ss_dssp             TE-EEEE--------ETTTEEEEEECS
T ss_pred             Cc-EEEE--------CCCCeEEEEEcc
Confidence            86 4443        235899999987

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=2.1e-18  Score=159.85  Aligned_cols=264  Identities=11%  Similarity=0.045  Sum_probs=172.2

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEe--cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceE---------EEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATH--TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF---------ALA   94 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~---------~~~   94 (387)
                      ...+|...+..+++++ +.-++++.  +.++...||....+            .....+..|.. .+.         ...
T Consensus        18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~l~~~~~-~~~~~~~~~~~~~~~   83 (662)
T 3azo_A           18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRAD------------GAEESALPAPW-NVRNRVFEYSGFPWA   83 (662)
T ss_dssp             HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTT------------SCEEESSCTTC-CBCCCGGGTCCCCEE
T ss_pred             HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCC------------CCcceeCCCCc-cccccccccCCccce
Confidence            4457999999999998 66677776  56889999997443            22334444443 233         455


Q ss_pred             EC--CCCCE-EEEecC-CCeEEEEEcC--C-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           95 MC--PTEPY-VLSGGK-DKSVVLWSIQ--D-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        95 ~~--~~~~~-l~s~~~-d~~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      |+  |||++ |+.++. +..|.++++.  . +.                                         ...+..
T Consensus        84 ~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-----------------------------------------~~~l~~  122 (662)
T 3azo_A           84 GVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-----------------------------------------PRPLTP  122 (662)
T ss_dssp             EECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-----------------------------------------CEECSC
T ss_pred             eeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-----------------------------------------CEeccC
Confidence            55  99998 776553 4556666554  1 11                                         022222


Q ss_pred             -----CCCCeEEEEEccCCCeeEEEecCC----------CeEEEEEccC------CCCceeEEee-ccCCCeeEEEecCC
Q 016547          168 -----HEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARV------GTSPVIKVEK-AHDADLHCVDWNPL  225 (387)
Q Consensus       168 -----~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~-~~~~~i~~~~~~~~  225 (387)
                           |...+..++|+||| +.|+.++.+          ..|++||+.+      ++   ...+. .+...+..++|+| 
T Consensus       123 ~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp-  197 (662)
T 3azo_A          123 VSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP-  197 (662)
T ss_dssp             CCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-
T ss_pred             CccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-
Confidence                 56678899999999 667776665          5899999987      44   23444 5556788899999 


Q ss_pred             CCCeEEEeeCC--------CeEEEEEec-cCCCCCCC---CceEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEE
Q 016547          226 DDNLILTGSAD--------NSVRMFDRR-NLTSNGVG---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIW  291 (387)
Q Consensus       226 ~~~~l~~~~~d--------g~i~~~d~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vw  291 (387)
                      ++++|+.++.+        ..|.+||+. +      +   +.......+...+..++|+|||+ +++++..++  .|.+|
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~------g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTED------GRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRV  270 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTT------SCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCC------CcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEE
Confidence            99999988755        379999998 4      4   33333344568899999999999 677888888  56666


Q ss_pred             eCCCCCceeccCCCCCCCCceeeeeeccCCC--------CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547          292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  363 (387)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~  363 (387)
                      |+.......               ....+..        .+..++|+|++..++        ++.. +.++||.++..  
T Consensus       271 ~~~~~~~~~---------------l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~--------~~~~-~~~~l~~~d~~--  324 (662)
T 3azo_A          271 DPATGAATQ---------------LCRREEEFAGPLWTPGMRWFAPLANGLIAV--------VHGK-GAAVLGILDPE--  324 (662)
T ss_dssp             CTTTCCEEE---------------SSCCSSBSSCCCCSTTCCSEEECTTSCEEE--------EEBS-SSCEEEEEETT--
T ss_pred             ECCCCceee---------------cccccccccCccccccCceEeEeCCCEEEE--------EEEc-CccEEEEEECC--
Confidence            654432111               0111111        156788999887665        4445 78888854410  


Q ss_pred             cccchhhhhhhccCceEEEe-ee
Q 016547          364 RPQDEVLAELEKFKAHVISC-TS  385 (387)
Q Consensus       364 ~~~~~~~~~~~~~~~~v~~~-~f  385 (387)
                        .++ +..+..|...+..+ ++
T Consensus       325 --~~~-~~~l~~~~~~~~~~~s~  344 (662)
T 3azo_A          325 --SGE-LVDAAGPWTEWAATLTV  344 (662)
T ss_dssp             --TTE-EEECCSSCCEEEEEEEE
T ss_pred             --CCc-EEEecCCCCeEEEEEec
Confidence              233 56666677777666 44

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=5.1e-18  Score=145.47  Aligned_cols=212  Identities=7%  Similarity=0.032  Sum_probs=137.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcC-CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQ-DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      .+..++|+|+|++|++++.+ .|.+|++. ++.....                                      .....
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~--------------------------------------~~~~~   81 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE--------------------------------------ASHPI   81 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE--------------------------------------EEEEC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe--------------------------------------eEeec
Confidence            35789999999999998887 99999986 4321100                                      00111


Q ss_pred             CCCCeEEEEEccCCCe-eEEEec-------------CCCeEEEEEccC-CCCceeEEee----ccCCCeeEEEecCCCCC
Q 016547          168 HEDTVEDVTFCPSSAQ-EFCSVG-------------DDSCLILWDARV-GTSPVIKVEK----AHDADLHCVDWNPLDDN  228 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~-~l~~~~-------------~dg~i~iwd~~~-~~~~~~~~~~----~~~~~i~~~~~~~~~~~  228 (387)
                      + +....++|+|++.. +++++.             .+|.+.+|++.. ++  ......    .+...+.+++|+| +++
T Consensus        82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~sp-dG~  157 (365)
T 1jof_A           82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDP-TET  157 (365)
T ss_dssp             C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred             C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECC-CCC
Confidence            1 22456889999932 345553             689999999974 44  222222    2456789999999 998


Q ss_pred             eEEEeeC-CCeEEEEEec-cCCCCCCCCc--eEEec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC-Cceec
Q 016547          229 LILTGSA-DNSVRMFDRR-NLTSNGVGSP--INKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVE  301 (387)
Q Consensus       229 ~l~~~~~-dg~i~~~d~~-~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~-~~~~~  301 (387)
                      ++++++. ++.|++||+. +      ++.  +..+.  .|...+..++|+|+|++++++...++.|.+|++... ++...
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            8887764 6899999998 4      443  23333  235678999999999987666666889999987631 11100


Q ss_pred             cCCCCCCCCceeeeee----ccCCC------CeeEEE-EccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          302 QGPRTTNYPAGLFFQH----AGHRD------KVVDFH-WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       302 ~~~~~~~~~~~~~~~~----~~~~~------~v~~~~-~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .        ...+..+    .+|..      .+..++ |+|+|++|+++...+  -....++|.+|+++
T Consensus       232 ~--------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~--~~~~~~~i~v~~~~  290 (365)
T 1jof_A          232 T--------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN--KFELQGYIAGFKLR  290 (365)
T ss_dssp             E--------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES--STTSCCEEEEEEEC
T ss_pred             c--------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC--CCCCCCeEEEEEEC
Confidence            0        0001111    12232      588999 999999887654322  01112399999996

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=7.8e-19  Score=160.21  Aligned_cols=235  Identities=11%  Similarity=0.031  Sum_probs=161.2

Q ss_pred             eeecCC-CcEEEEEecCCCCcEEEEecC---CCcEEEEeccC--CCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           26 KTIIHP-GEVNRIRELPQNTKIVATHTD---SPDVLIWDVEA--QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        26 ~~~~h~-~~v~~i~~~~~~~~~l~t~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      ++..|. ..+..++|+| + +++++++.   +....+|.+..  .            .....+.....  +...+|+|+|
T Consensus        58 ~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~------------g~~~~l~~~~~--~~~~~~s~dg  121 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRP------------GEEQRLEAVKP--MRILSGVDTG  121 (582)
T ss_dssp             ECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTST------------TCCEECTTSCS--BEEEEEEECS
T ss_pred             eeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCC------------CccccccCCCC--ceeeeeCCCC
Confidence            334555 6899999998 6 78887765   55667776654  2            11113333332  3466888887


Q ss_pred             C--EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547          100 P--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus       100 ~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      +  .+++++.+ .+.+||+.++..                                         ..+..+..  .+++|
T Consensus       122 ~~~~~~s~~~~-~~~l~d~~~g~~-----------------------------------------~~l~~~~~--~~~~~  157 (582)
T 3o4h_A          122 EAVVFTGATED-RVALYALDGGGL-----------------------------------------RELARLPG--FGFVS  157 (582)
T ss_dssp             SCEEEEEECSS-CEEEEEEETTEE-----------------------------------------EEEEEESS--CEEEE
T ss_pred             CeEEEEecCCC-CceEEEccCCcE-----------------------------------------EEeecCCC--ceEEE
Confidence            6  34455544 455999976432                                         11122222  78999


Q ss_pred             ccCCCeeEEEecCC----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC--eEEEEEeccCCCCC
Q 016547          178 CPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNG  251 (387)
Q Consensus       178 ~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~  251 (387)
                      +||| +.+++++.+    +.|++||+.+++   ...+..|...+..++|+| +++.|+++..++  .|++||+.+     
T Consensus       158 spDG-~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~-----  227 (582)
T 3o4h_A          158 DIRG-DLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD-----  227 (582)
T ss_dssp             EEET-TEEEEEEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT-----
T ss_pred             CCCC-CEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC-----
Confidence            9999 778877666    789999998887   345667888899999999 999999888888  899999987     


Q ss_pred             CCCceEEeccccceEEEEE--------EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          252 VGSPINKFEGHSAAVLCVQ--------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       252 ~~~~~~~~~~~~~~i~~~~--------~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                       ++.. .+..|...+..++        |+||| .++++++.|+.+++|++  + +.              ..   ...+.
T Consensus       228 -~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g-~~--------------~~---~~~~~  284 (582)
T 3o4h_A          228 -GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--G-ER--------------VE---APQGN  284 (582)
T ss_dssp             -CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--T-EE--------------EC---CCSSE
T ss_pred             -CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--C-Ce--------------ec---cCCCc
Confidence             6655 6666766666666        99999 57889999999999999  2 21              11   22357


Q ss_pred             eeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          324 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       324 v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.+++|+ ++..++ +++.+    ..-..+.+|+..
T Consensus       285 v~~~~~s-dg~~l~-~~s~~----~~p~~l~~~d~~  314 (582)
T 3o4h_A          285 HGRVVLW-RGKLVT-SHTSL----STPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEE-TTEEEE-EEEET----TEEEEEEEETTC
T ss_pred             eEEEEec-CCEEEE-EEcCC----CCCCeEEEEcCC
Confidence            8899999 776654 43322    122456666655

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=1e-17  Score=142.95  Aligned_cols=258  Identities=12%  Similarity=0.065  Sum_probs=172.2

Q ss_pred             EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-----CCceEEEEECCCCC
Q 016547           36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEP  100 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~~~~~~  100 (387)
                      .++|+| ++++|++++          .++.|.+||..+.            +....+....     +.....++++|+|+
T Consensus        54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------------~~~~~i~~~~~~~~~g~~p~~i~~spdg~  120 (361)
T 2oiz_A           54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKL------------TFEKEISLPPKRVQGLNYDGLFRQTTDGK  120 (361)
T ss_dssp             EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------------CEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred             ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCC------------cEEEEEEcCccccccCCCcceEEECCCCC
Confidence            899999 788777765          3678999999887            4444444221     11235899999999


Q ss_pred             EEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee-ecCCCCCeEEEEE
Q 016547          101 YVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTF  177 (387)
Q Consensus       101 ~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~  177 (387)
                      +|+++..  +++|.+||+.+.+..                                        .. +..  .....+.+
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~----------------------------------------~~~i~~--~~~~~v~~  158 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYV----------------------------------------EDVTAA--AGCWSVIP  158 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEE----------------------------------------EEEGGG--TTEEEEEE
T ss_pred             EEEEECCCCCCeEEEEECCCCcEE----------------------------------------EEEecC--CCcceeEE
Confidence            9998864  689999999865321                                        11 111  12233567


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeE------EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIK------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      .|++...+++.+.||.+.+|+...... ...      .+.....+ ..+.+.+ ++..++..+.++.|.++|+....   
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~---  232 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGK-VASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYYGNVYSADFSGDE---  232 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSS-EEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTTSEEEEEECSSSS---
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCc-EeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCCCeEEEEEecCCC---
Confidence            787666788888999999999865321 221      11111222 2334456 66777777889999999987521   


Q ss_pred             CCCceEEecc------cc----ceEEEEEEcCCCCeeEEEec----------CCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547          252 VGSPINKFEG------HS----AAVLCVQWSPDKSSVFGSSA----------EDGLLNIWDYEKVGKKVEQGPRTTNYPA  311 (387)
Q Consensus       252 ~~~~~~~~~~------~~----~~i~~~~~~~~~~~ll~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~  311 (387)
                       ...+..+..      +.    .....++|+|+++.++++..          ..+.|.+||+.+.               
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------------  296 (361)
T 2oiz_A          233 -VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------------  296 (361)
T ss_dssp             -CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------------
T ss_pred             -ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------------
Confidence             111122110      00    11113789999888876654          1358999999875               


Q ss_pred             eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccc--hhhhhhhccCceEEEeeecC
Q 016547          312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +.+..+..+.  +.+++|+|+|++|++        ++. ++|.+||..      ++  +.+.++..+...-..++|+|
T Consensus       297 ~~v~~i~~~~--p~~ia~spdg~~l~v--------~n~-~~v~v~D~~------t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          297 QRVARIPGRD--ALSMTIDQQRNLMLT--------LDG-GNVNVYDIS------QPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             EEEEEEECTT--CCEEEEETTTTEEEE--------ECS-SCEEEEECS------SSSCEEEEEETTSCSSEEEEEECC
T ss_pred             cEEEEEecCC--eeEEEECCCCCEEEE--------eCC-CeEEEEECC------CCcceeeEEeccCCCCcEEEEecC
Confidence            3455666665  899999999998874        223 899999999      78  88888777777888889887

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=7.7e-18  Score=145.76  Aligned_cols=242  Identities=9%  Similarity=0.032  Sum_probs=155.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEE--ECCCCCEEEE--
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA--MCPTEPYVLS--  104 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~--~~~~~~~l~s--  104 (387)
                      +|...+...+|+| +++.|+.++.++.|++||+.++            +....+..+.. .+....  +++++++++.  
T Consensus        78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g------------~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~  143 (388)
T 3pe7_A           78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATL------------EENVVYQVPAE-WVGYGTWVANSDCTKLVGIE  143 (388)
T ss_dssp             SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECCTT-EEEEEEEEECTTSSEEEEEE
T ss_pred             CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCC------------cceeeeechhh-cccccceeECCCCCeecccc
Confidence            3445555678999 8889999998999999999988            44444554543 343333  4899998874  


Q ss_pred             --------------------ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547          105 --------------------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus       105 --------------------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                                          ...+..|.+||+.++..                                         ..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------------~~  182 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----------------------------------------TV  182 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----------------------------------------EE
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCce-----------------------------------------EE
Confidence                                23456788888875421                                         33


Q ss_pred             ecCCCCCeEEEEEcc-CCCeeEEEecC------CCeEEEEEccCCCCceeEEeeccC--CCeeEEEecCCCCCeEEEeeC
Q 016547          165 YNGHEDTVEDVTFCP-SSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~-~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~  235 (387)
                      +..+...+..+.|+| ++ ..++....      ...|.++|....+   ...+..+.  ..+..++|+| +++.|+..+.
T Consensus       183 l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~  257 (388)
T 3pe7_A          183 ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVP-DGSALVYVSY  257 (388)
T ss_dssp             EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred             eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECC-CCCEEEEEec
Confidence            334556789999999 88 66665544      3378888877655   23333333  2577889999 8887765443


Q ss_pred             -CC----eEEEEEeccCCCCCCCC--ceEEeccccce---EEEEEEcCCCCeeEEEe--------cCCCeEEEEeCCCCC
Q 016547          236 -DN----SVRMFDRRNLTSNGVGS--PINKFEGHSAA---VLCVQWSPDKSSVFGSS--------AEDGLLNIWDYEKVG  297 (387)
Q Consensus       236 -dg----~i~~~d~~~~~~~~~~~--~~~~~~~~~~~---i~~~~~~~~~~~ll~s~--------~~d~~i~vwd~~~~~  297 (387)
                       ++    .|.+||+.+      ++  .+..+.++...   ...++|+|+|+.|+++.        ..+..|++||+....
T Consensus       258 ~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          258 LKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             ETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             CCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence             22    399999987      44  33333331111   11237999999766443        456789999998742


Q ss_pred             ceeccCCCCCCCCceeeeeeccCCC-----------CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          298 KKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                                      ...+..+..           .+..++|+|+|++++.++..+       |...||.++
T Consensus       332 ----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------g~~~l~~~~  381 (388)
T 3pe7_A          332 ----------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------GKPALYLAT  381 (388)
T ss_dssp             ----------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred             ----------------eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC-------CceeEEEEE
Confidence                            122333333           578899999999888755433       666666654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=1.6e-17  Score=140.58  Aligned_cols=268  Identities=9%  Similarity=0.050  Sum_probs=171.6

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ..|.+++|++ +...++..+.++.++.|.   .            .....+..+.. .+.+++|+++|++++++..++.|
T Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~i   68 (333)
T 2dg1_A            6 QDLPTLFYSG-KSNSAVPIISESELQTIT---A------------EPWLEISKKGL-QLEGLNFDRQGQLFLLDVFEGNI   68 (333)
T ss_dssp             CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---C------------EEEEEEESSCC-CEEEEEECTTSCEEEEETTTCEE
T ss_pred             cccceeeecC-CccceeEEeecccCcccc---c------------ceeEEEeccCc-cccCcEECCCCCEEEEECCCCEE
Confidence            4477888888 666677767788899992   2            23445555554 46899999999988888889999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      .+||.+++...                                        .....+...+.+++++|++ +++++...+
T Consensus        69 ~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~dg-~l~v~~~~~  107 (333)
T 2dg1_A           69 FKINPETKEIK----------------------------------------RPFVSHKANPAAIKIHKDG-RLFVCYLGD  107 (333)
T ss_dssp             EEECTTTCCEE----------------------------------------EEEECSSSSEEEEEECTTS-CEEEEECTT
T ss_pred             EEEeCCCCcEE----------------------------------------EEeeCCCCCcceEEECCCC-cEEEEeCCC
Confidence            99998754221                                        1112345679999999998 677776666


Q ss_pred             ----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC------CCeEEEEEeccCCCCCCCCceEEecc
Q 016547          192 ----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       192 ----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                          +.|.+||..++..........+...+..++++| +++++++...      .+.|..+|...      ++ +..+..
T Consensus       108 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~------~~-~~~~~~  179 (333)
T 2dg1_A          108 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF------RT-VTPIIQ  179 (333)
T ss_dssp             SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS------CC-EEEEEE
T ss_pred             CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC------CE-EEEeec
Confidence                689999988776221111112445789999999 8887776653      24555555443      22 233322


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ....+..++|+|+++.++++.+.++.|.+||+...+.....      ........+.++ ..+..+++++++..++ +. 
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~------~~~~~~~~~~~~-~~~~~i~~d~~G~l~v-~~-  250 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGATIPYYFTGH-EGPDSCCIDSDDNLYV-AM-  250 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEEEEEEECCSS-SEEEEEEEBTTCCEEE-EE-
T ss_pred             CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc------ccceEEEecCCC-CCCCceEECCCCCEEE-EE-
Confidence            33457899999999877777777889999998642211100      000011112222 4678899999987555 22 


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccC------ceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK------AHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------~~v~~~~f~P  387 (387)
                            ..++.|.+||..       ++.+..+..+.      ..+.+++|+|
T Consensus       251 ------~~~~~v~~~d~~-------g~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          251 ------YGQGRVLVFNKR-------GYPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             ------ETTTEEEEECTT-------SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             ------cCCCEEEEECCC-------CCEEEEEEcCCCccccccCcceEEECC
Confidence                  234799999875       23333333222      2567777764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=5.1e-17  Score=138.42  Aligned_cols=197  Identities=12%  Similarity=0.139  Sum_probs=136.8

Q ss_pred             cEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-----CCceEEEEECCCCCEEEEec
Q 016547           33 EVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        33 ~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+..++|+| +++ +++++..++.|.+||+.++            +....+..+.     ...+..++|+|+|++|++++
T Consensus        44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  110 (349)
T 1jmx_B           44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTC------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  110 (349)
T ss_dssp             SSCEEEECT-TSSEEEEEETTTTEEEEEETTTT------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CCceeEECC-CCCEEEEEeCCCCcEEEEeCCCC------------cEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence            678999999 655 5567677899999999887            3444443222     11357899999999999888


Q ss_pred             CC------------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE
Q 016547          107 KD------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  174 (387)
Q Consensus       107 ~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  174 (387)
                      .+            +.|.+||+.++....                                     .+..+. +...+.+
T Consensus       111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-------------------------------------~~~~~~-~~~~~~~  152 (349)
T 1jmx_B          111 NPTQRLNDHYVVKPPRLEVFSTADGLEAK-------------------------------------PVRTFP-MPRQVYL  152 (349)
T ss_dssp             EEEEECSSCEEECCCEEEEEEGGGGGGBC-------------------------------------CSEEEE-CCSSCCC
T ss_pred             ccccccccccccCCCeEEEEECCCccccc-------------------------------------eeeecc-CCCcccc
Confidence            65            899999997642211                                     111222 2335788


Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-----------------------------------------
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-----------------------------------------  213 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------------------  213 (387)
                      ++|+|++ + +++++.  .|.+||+.+++  ....+..+                                         
T Consensus       153 ~~~s~dg-~-l~~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  226 (349)
T 1jmx_B          153 MRAADDG-S-LYVAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  226 (349)
T ss_dssp             EEECTTS-C-EEEESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             eeECCCC-c-EEEccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence            9999999 5 444443  49999998776  22222211                                         


Q ss_pred             ---------------------------CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          214 ---------------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       214 ---------------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                                                 ...+..++++|.++++++++  ++.|.+||+.+      ++.+..+.. ...+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~-~~~~  297 (349)
T 1jmx_B          227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLIKAANL-DHTY  297 (349)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEEEEEEC-SSCC
T ss_pred             cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEEEEEcC-CCCc
Confidence                                       11344566667456677777  88999999988      777666653 3456


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+++|+|++++|+ +++.++.|.+||+.+.
T Consensus       298 ~~~~~s~dg~~l~-~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          298 YCVAFDKKGDKLY-LGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             CEEEECSSSSCEE-EESBSSEEEEEETTTT
T ss_pred             cceEECCCCCEEE-EecCCCeEEEEecccc
Confidence            7999999999766 4677899999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=3.5e-15  Score=126.20  Aligned_cols=252  Identities=10%  Similarity=0.046  Sum_probs=163.9

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ....+...+.+++|.+ ++++++++..++.|.+||.+++            +.......+.. .+.+++++++|+++++.
T Consensus        39 ~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~-~~~~i~~~~dg~l~v~~  104 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCY  104 (333)
T ss_dssp             EEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEE
T ss_pred             EEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCC------------cEEEEeeCCCC-CcceEEECCCCcEEEEe
Confidence            3445667789999998 7888888888999999999877            33333323444 58999999999988877


Q ss_pred             cCC----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          106 GKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       106 ~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      ..+    +.|.+||.++.......                                      ....+...+.++++.|++
T Consensus       105 ~~~~~~~~~i~~~d~~~~~~~~~~--------------------------------------~~~~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A          105 LGDFKSTGGIFAATENGDNLQDII--------------------------------------EDLSTAYCIDDMVFDSKG  146 (333)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEE--------------------------------------CSSSSCCCEEEEEECTTS
T ss_pred             CCCCCCCceEEEEeCCCCEEEEEE--------------------------------------ccCccCCcccceEECCCC
Confidence            666    68999998754321000                                      001123568899999998


Q ss_pred             CeeEEEecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCC
Q 016547          182 AQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       182 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                       +++++...      .+.|..+|...++  . ..+......+..++|+| +++.+ ++.+.++.|.+||....     +.
T Consensus       147 -~l~v~~~~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~-----g~  216 (333)
T 2dg1_A          147 -GFYFTDFRGYSTNPLGGVYYVSPDFRT--V-TPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD-----GV  216 (333)
T ss_dssp             -CEEEEECCCBTTBCCEEEEEECTTSCC--E-EEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT-----SS
T ss_pred             -CEEEEeccccccCCCceEEEEeCCCCE--E-EEeecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCC-----Cc
Confidence             66666543      3556666665544  2 22223334578999999 88755 44456789999999641     22


Q ss_pred             ceEE--------eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc------C
Q 016547          255 PINK--------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------H  320 (387)
Q Consensus       255 ~~~~--------~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  320 (387)
                      .+..        +.++ ..+..++++++|. ++++...++.|.+||... ..               +..+..      |
T Consensus       217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g-~~---------------~~~~~~~~~~~g~  278 (333)
T 2dg1_A          217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG-YP---------------IGQILIPGRDEGH  278 (333)
T ss_dssp             SEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS-CE---------------EEEEECTTGGGTC
T ss_pred             CcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC-CE---------------EEEEEcCCCcccc
Confidence            2211        1222 4678899999998 565666688999999843 11               222222      2


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ...+.+++|+|+++.|+++.+..  .....+.|...++.
T Consensus       279 ~~~~~~~~~~~dg~~L~v~~~~g--~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          279 MLRSTHPQFIPGTNQLIICSNDI--EMGGGSMLYTVNGF  315 (333)
T ss_dssp             SCBCCEEEECTTSCEEEEEEECG--GGTCCEEEEEEECS
T ss_pred             ccCcceEEECCCCCEEEEEeCcc--CCCCCceEEEEecc
Confidence            23689999999988887766542  11223455555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.6e-16  Score=148.09  Aligned_cols=250  Identities=7%  Similarity=-0.073  Sum_probs=167.0

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCC-----cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      |...+..++|+| ++++||.+..++     +|++||+.++            +.......+.  .+..++|+|||+.|+.
T Consensus       123 ~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg------------~~~~~~~~~~--~~~~~~wspDg~~l~~  187 (710)
T 2xdw_A          123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGA------------KELPDVLERV--KFSCMAWTHDGKGMFY  187 (710)
T ss_dssp             SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTT------------EEEEEEEEEE--CSCCEEECTTSSEEEE
T ss_pred             CCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCC------------CCCcccccCc--ccceEEEEeCCCEEEE
Confidence            445688999999 888888765533     8999999988            3332222222  1457999999999998


Q ss_pred             ecCCCe----------------EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547          105 GGKDKS----------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus       105 ~~~d~~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ++.++.                |.+|++.++....                                    ..+.....|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~~v~~~~~~  231 (710)
T 2xdw_A          188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED------------------------------------ILCAEFPDE  231 (710)
T ss_dssp             EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC------------------------------------EEEECCTTC
T ss_pred             EEECCccccccccccccCCCCEEEEEECCCCcccc------------------------------------eEEeccCCC
Confidence            887765                8888886543110                                    000111224


Q ss_pred             CCCeEEEEEccCCCeeEEEecC-----CCeEEEEEccC------CCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-  236 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-  236 (387)
                      ...+..+.|+|+| ++++..+.     +..|.+||+.+      +.. ....+..+...+.. .|+| +++.|+..+.+ 
T Consensus       232 ~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~~~  307 (710)
T 2xdw_A          232 PKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRH  307 (710)
T ss_dssp             TTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEECTT
T ss_pred             CeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEECCC
Confidence            5567899999999 55554433     57899999986      421 13444455555554 4788 77777766553 


Q ss_pred             ---CeEEEEEeccCCCCCCCC--ceEEeccccc--eEEEEEEcCCCCeeEEEecCCCe--EEEEeCCCCCceeccCCCCC
Q 016547          237 ---NSVRMFDRRNLTSNGVGS--PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       237 ---g~i~~~d~~~~~~~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~--i~vwd~~~~~~~~~~~~~~~  307 (387)
                         +.|.+||+.+      +.  ....+..|..  .+..++|++++. ++++...|+.  |.+||+..+.          
T Consensus       308 ~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~----------  370 (710)
T 2xdw_A          308 SPNYRLINIDFTD------PEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGA----------  370 (710)
T ss_dssp             CTTCEEEEEETTS------CCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCC----------
T ss_pred             CCCCEEEEEeCCC------CCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCC----------
Confidence               3699999876      32  2344444443  688899986555 6778888885  5556664431          


Q ss_pred             CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                           ....+..+.+.+..++++|+++.++++.+    +....++|++||+..
T Consensus       371 -----~~~~l~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          371 -----LLKIFPLEVGSVVGYSGQKKDTEIFYQFT----SFLSPGIIYHCDLTK  414 (710)
T ss_dssp             -----EEEEECCCSSEEEEEECCTTCSEEEEEEE----CSSCCCEEEEEETTS
T ss_pred             -----EEEecCCCCceEEEEecCCCCCEEEEEEe----CCCCCCEEEEEECCC
Confidence                 23334556778899999999988887776    556778999999973

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=2.2e-17  Score=153.12  Aligned_cols=240  Identities=10%  Similarity=0.057  Sum_probs=148.3

Q ss_pred             eeecCCCcEE---------EEEec--CCCCcE-EEEec-CCCcEEEEecc--C-CCCcccccCCCCCCCeEEEec-----
Q 016547           26 KTIIHPGEVN---------RIREL--PQNTKI-VATHT-DSPDVLIWDVE--A-QPNRHAVLGATNSRPDLILTG-----   84 (387)
Q Consensus        26 ~~~~h~~~v~---------~i~~~--~~~~~~-l~t~~-~dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~-----   84 (387)
                      ++..|...+.         ...|+  | +++. |+.++ .+..|.+|++.  + +            . ...+..     
T Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~------------~-~~~l~~~~~~~  127 (662)
T 3azo_A           62 SALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGA------------V-PRPLTPVSAVG  127 (662)
T ss_dssp             ESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCC------------C-CEECSCCCCST
T ss_pred             eeCCCCccccccccccCCccceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCC------------C-CEeccCCccCC
Confidence            4445666665         56566  7 6666 55544 46677777776  3 3            1 122333     


Q ss_pred             cCCCceEEEEECCCCCEEEEecCC----------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCC
Q 016547           85 HQDNAEFALAMCPTEPYVLSGGKD----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA  154 (387)
Q Consensus        85 h~~~~v~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (387)
                      |.. .+..++|+|||+.|++++.|          ..|.+||+.+....                                
T Consensus       128 ~~~-~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------------  174 (662)
T 3azo_A          128 GGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--------------------------------  174 (662)
T ss_dssp             TCE-EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--------------------------------
T ss_pred             CCc-cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--------------------------------
Confidence            333 57899999999999988876          58999998751000                                


Q ss_pred             CCCCCCCceeec-CCCCCeEEEEEccCCCeeEEEecCC--------CeEEEEEcc-CCCC-ceeEEeeccCCCeeEEEec
Q 016547          155 DGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWN  223 (387)
Q Consensus       155 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~i~~~~~~  223 (387)
                         .......+. .+...+..++|+||| +.|+.++.+        ..|.+||+. ++.. ........+...+..+.|+
T Consensus       175 ---~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          175 ---DRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             ---CGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred             ---cCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence               000012223 444677889999999 666665533        479999998 4521 1233334456789999999


Q ss_pred             CCCCCeEEEeeCCC--eEEEEEeccCCCCCCCCceEEeccccce--------EEEEEEcCCCCeeEEEecCCCeEEEEeC
Q 016547          224 PLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGLLNIWDY  293 (387)
Q Consensus       224 ~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~ll~s~~~d~~i~vwd~  293 (387)
                      | +++++++++.++  .|.+||..+      ++.......+...        +..++|+|+++ +++++.. +.++||.+
T Consensus       251 p-dg~l~~~~~~~~~~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          251 P-DGSLIVATDRTGWWNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             T-TSCEEEEECTTSSCEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEE
T ss_pred             C-CCeEEEEECCCCCeEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEE
Confidence            9 888888888888  455555543      3333222222221        46788999988 5668877 99999955


Q ss_pred             CCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          294 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      .....              ....+..|...+..+ |+++++.+++++
T Consensus       322 d~~~~--------------~~~~l~~~~~~~~~~-~s~~~~~~~~~~  353 (662)
T 3azo_A          322 DPESG--------------ELVDAAGPWTEWAAT-LTVSGTRAVGVA  353 (662)
T ss_dssp             ETTTT--------------EEEECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred             ECCCC--------------cEEEecCCCCeEEEE-EecCCCEEEEEE
Confidence            43211              134445666667666 255566665544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.8e-17  Score=155.15  Aligned_cols=199  Identities=12%  Similarity=0.184  Sum_probs=133.3

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      ..++.|+|+|++++++  |++|++||+.++...                                        ..+.+|.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------------------------------------~~~~~~~   56 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------------------------------------VFLENST   56 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------------------------------------EEECTTT
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceE----------------------------------------EEEechh
Confidence            4589999999999886  899999999876432                                        2222332


Q ss_pred             -----CCeEEEEEccCCCeeEEEecCC---------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          170 -----DTVEDVTFCPSSAQEFCSVGDD---------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       170 -----~~v~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                           .....+.|+||| +.++.++.+         +.+.+||+.+++   ...+..+...+...+|+| +++.||.+ .
T Consensus        57 ~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SP-dG~~la~~-~  130 (740)
T 4a5s_A           57 FDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-W  130 (740)
T ss_dssp             TTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-E
T ss_pred             hhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECC-CCCEEEEE-E
Confidence                 123458899999 677777665         567799999887   334556778899999999 99999888 5


Q ss_pred             CCeEEEEEeccCCCCCCCCceEE-eccccceE-----------------EEEEEcCCCCeeEEEecCCCeEEE-------
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINK-FEGHSAAV-----------------LCVQWSPDKSSVFGSSAEDGLLNI-------  290 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i-----------------~~~~~~~~~~~ll~s~~~d~~i~v-------  290 (387)
                      ++.|++||+.+      +...+. ..++...+                 ..+.|||||++|+....+++.+.+       
T Consensus       131 ~~~i~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~  204 (740)
T 4a5s_A          131 NNDIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS  204 (740)
T ss_dssp             TTEEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred             CCeEEEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence            78999999886      443221 12222222                 348999999975433333333444       


Q ss_pred             ----------------------------EeCCC---CCceeccCCCCCCCCceeeeeec------cCCCCeeEEEEccCC
Q 016547          291 ----------------------------WDYEK---VGKKVEQGPRTTNYPAGLFFQHA------GHRDKVVDFHWNASD  333 (387)
Q Consensus       291 ----------------------------wd~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~  333 (387)
                                                  ||+..   ....             ....+.      +|...+..++|+||+
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~wspdg  271 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA-------------TSIQITAPASMLIGDHYLCDVTWATQE  271 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC-------------CEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred             CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc-------------eEEEecCCccCCCCCeEEEEEEEeCCC
Confidence                                        44443   2100             011111      367789999999999


Q ss_pred             CeEEEEecCCCCCCCCCceEEEEecC
Q 016547          334 PWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       334 ~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.++....    .++.+..|++||+.
T Consensus       272 ~~~~~~~~----r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          272 RISLQWLR----RIQNYSVMDICDYD  293 (740)
T ss_dssp             EEEEEEEE----SSTTEEEEEEEEEE
T ss_pred             eEEEEEeC----CCCCEEEEEEEECC
Confidence            85554433    34456789999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=2.5e-15  Score=126.75  Aligned_cols=251  Identities=8%  Similarity=0.018  Sum_probs=163.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-C
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G  167 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  167 (387)
                      .+.+++++|+|+++++...++.+.+++.+.....   .... ..+            ...+.+..++..+.+.+..+. .
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~---~~~~-~~~------------~~~~~i~~~d~~~g~~~~~~~~~   88 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY---QQRG-LGP------------IEEDTILVIDPNNAEILQSSGKN   88 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCB---SCGG-GCS------------CCSCCEEEECTTTCCEEEEECTT
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceee---cccc-ccc------------ccCCcEEEEECCCCeEEeccCCC
Confidence            5889999999999988887754333222111000   0000 000            011122222222222222222 3


Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe---------eccCCCeeEEEecCCCCCeEEEee-CCC
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGS-ADN  237 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~l~~~~-~dg  237 (387)
                      +......+++.|++ +++++...++.|++||...... .+..+         ..+...+..++++|.++.++++.+ .++
T Consensus        89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            44578899999998 6888888899999999865421 12222         234456889999984567777765 689


Q ss_pred             eEEEEEeccCCCCCCCCceEEecccc----------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHS----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  307 (387)
                      .|++||..       +..+..+....          .....++++|++..++++...++.|++||..++.          
T Consensus       167 ~I~~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----------  229 (329)
T 3fvz_A          167 RIVQFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----------  229 (329)
T ss_dssp             EEEEECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----------
T ss_pred             eEEEEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----------
Confidence            99999943       66666664322          3388999999955578888899999999998532          


Q ss_pred             CCCceeeeee--ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh---hccCceEEE
Q 016547          308 NYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---EKFKAHVIS  382 (387)
Q Consensus       308 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~v~~  382 (387)
                           .+..+  ..+...+..++|+|  ..++++.+...++...++.|++|++.      +++.+..+   .++.....+
T Consensus       230 -----~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~------~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          230 -----FVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFS------SGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             -----EEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETT------TCCEEEEECCSSSCCSSEEE
T ss_pred             -----EEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcC------CCeEEEEEcCCCCccCCeeE
Confidence                 22222  34566788999999  45555555554466777899999998      67777766   356677888


Q ss_pred             eeecC
Q 016547          383 CTSKP  387 (387)
Q Consensus       383 ~~f~P  387 (387)
                      ++|+|
T Consensus       297 ia~~~  301 (329)
T 3fvz_A          297 IVASE  301 (329)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            88876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=9.8e-16  Score=125.55  Aligned_cols=238  Identities=7%  Similarity=-0.035  Sum_probs=160.2

Q ss_pred             cEEEEEecCCCCcEEE-EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           33 EVNRIRELPQNTKIVA-THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      ...++++.+ ++++++ +...++.|.+||..+..            .......+.. .+.+++++++|+.+++.. ++.|
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~-~p~~i~~~~~g~l~v~~~-~~~i   89 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTG------------TTVLPFNGLY-QPQGLAVDGAGTVYVTDF-NNRV   89 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----------------EECCCCSCC-SCCCEEECTTCCEEEEET-TTEE
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcc------------cceEeeCCcC-CcceeEECCCCCEEEEcC-CCEE
Confidence            778999998 777777 55778899999976552            1111111212 357899999999766666 8899


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCC
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  191 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  191 (387)
                      .+||........                                        ........+.++++.+++ +++++...+
T Consensus        90 ~~~d~~~~~~~~----------------------------------------~~~~~~~~p~~i~~~~~g-~l~v~~~~~  128 (270)
T 1rwi_B           90 VTLAAGSNNQTV----------------------------------------LPFDGLNYPEGLAVDTQG-AVYVADRGN  128 (270)
T ss_dssp             EEECTTCSCCEE----------------------------------------CCCCSCSSEEEEEECTTC-CEEEEEGGG
T ss_pred             EEEeCCCceEee----------------------------------------eecCCcCCCcceEECCCC-CEEEEECCC
Confidence            999976432110                                        001122467899999998 677777778


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  271 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~  271 (387)
                      +.|.+|+..+..  ...........+..+++++ +++++++...++.|.+||...      .........+...+.++++
T Consensus       129 ~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~~  199 (270)
T 1rwi_B          129 NRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIAV  199 (270)
T ss_dssp             TEEEEECTTCCS--CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEEE
T ss_pred             CEEEEEECCCce--eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEEE
Confidence            899999765544  2222223334678999999 888777777788999999875      3332222223356889999


Q ss_pred             cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547          272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  351 (387)
Q Consensus       272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg  351 (387)
                      +++|. ++++...++.|.+||.......               .....+...+.+++++++|. ++++.+.       ++
T Consensus       200 d~~g~-l~v~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~-l~v~~~~-------~~  255 (270)
T 1rwi_B          200 DEAGT-VYVTEHNTNQVVKLLAGSTTST---------------VLPFTGLNTPLAVAVDSDRT-VYVADRG-------ND  255 (270)
T ss_dssp             CTTCC-EEEEETTTSCEEEECTTCSCCE---------------ECCCCSCSCEEEEEECTTCC-EEEEEGG-------GT
T ss_pred             CCCCC-EEEEECCCCcEEEEcCCCCcce---------------eeccCCCCCceeEEECCCCC-EEEEECC-------CC
Confidence            99995 6777777889999998653111               11122335789999999987 5554443       49


Q ss_pred             eEEEEecC
Q 016547          352 TLQIWRMS  359 (387)
Q Consensus       352 ~i~iw~~~  359 (387)
                      .|+++++.
T Consensus       256 ~v~~~~~~  263 (270)
T 1rwi_B          256 RVVKLTSL  263 (270)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99999998

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=2.7e-15  Score=124.62  Aligned_cols=231  Identities=9%  Similarity=0.059  Sum_probs=158.8

Q ss_pred             eeecCCCcEEEEEecCCCCc-EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           26 KTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ....+.....+++|.| +++ +++++..++.|..||..++              ...+..+.. .+.+++++++|+++++
T Consensus        22 ~l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~-~~~~l~~~~dg~l~v~   85 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--------------LSPEMHPSH-HQNGHCLNKQGHLIAC   85 (296)
T ss_dssp             EEECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--------------EEEEESSCS-SEEEEEECTTCCEEEE
T ss_pred             EEecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--------------eEEEECCCC-CcceeeECCCCcEEEE
Confidence            3335667788999999 665 8889999999999998764              233444444 5789999999998888


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCe
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  183 (387)
                      ...++.|.+||..++.......                                     ... .....+..+++.|+| +
T Consensus        86 ~~~~~~i~~~d~~~g~~~~~~~-------------------------------------~~~~~~~~~~~~i~~d~~G-~  127 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWESIAD-------------------------------------SFEGKKLNSPNDVCLAPDG-S  127 (296)
T ss_dssp             ETTTTEEEEECSTTCCEEEEEC-------------------------------------EETTEECCCCCCEEECTTS-C
T ss_pred             ecCCCeEEEEcCCCCcEEEEee-------------------------------------ccCCCCCCCCCCEEECCCC-C
Confidence            7778899999986543211000                                     000 112346789999998 7


Q ss_pred             eEEE----ec-------------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          184 EFCS----VG-------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       184 ~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ++++    ++             ..+.|..++.. ++   ......+......++|+| +++.+++.+.++.|.+||+..
T Consensus       128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~  202 (296)
T 3e5z_A          128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNA  202 (296)
T ss_dssp             EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECS
T ss_pred             EEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECC
Confidence            7776    32             13456666654 33   334445666789999999 898887777789999999972


Q ss_pred             CCCCCCCCc---eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC
Q 016547          247 LTSNGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  323 (387)
Q Consensus       247 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (387)
                      .     +..   ...+..+...+.+++++++|+ ++++.  ++.|.+||...                ..+..+..+.. 
T Consensus       203 ~-----g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g----------------~~~~~~~~~~~-  257 (296)
T 3e5z_A          203 R-----GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG----------------DELGRVLTPQT-  257 (296)
T ss_dssp             S-----SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS----------------CEEEEEECSSC-
T ss_pred             C-----CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC----------------CEEEEEECCCC-
Confidence            1     332   223333455667899999998 45454  78899999863                23444555666 


Q ss_pred             eeEEEE-ccCCCeEEEEe
Q 016547          324 VVDFHW-NASDPWTVVSV  340 (387)
Q Consensus       324 v~~~~~-~~~~~~l~~s~  340 (387)
                      +++++| .|+++.|.++.
T Consensus       258 ~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             CCEEEEESTTSCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEEc
Confidence            899999 58888888643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=2.5e-17  Score=142.96  Aligned_cols=263  Identities=11%  Similarity=0.021  Sum_probs=152.7

Q ss_pred             EEEEEecCCCCcEEEEecC-C--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           34 VNRIRELPQNTKIVATHTD-S--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      +.+++|+| ++++|+.... +  ..|.+||+.++            +.. .+..+.......+.|+|||++|+.++.++.
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~------------~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQ------------QAV-QLTEGKGDNTFGGFISTDERAFFYVKNELN  103 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTT------------EEE-ECCCSSCBCTTTCEECTTSSEEEEEETTTE
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCC------------cEE-EeecCCCCccccceECCCCCEEEEEEcCCc
Confidence            77889999 7777766543 2  36888898876            222 222222222334789999999999998999


Q ss_pred             EEEEEcCCCcCccccCCCcccCCC-----------------------CCCceeccC---CCCCCCCCCCCCCCCCCCcee
Q 016547          111 VVLWSIQDHITSSATDPATAKSAG-----------------------SSGSIIKQS---PKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      |.+||+.++...............                       ..+..+...   .......+..++....+....
T Consensus       104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence            999999876432211100000000                       000000000   001222333444444433332


Q ss_pred             ecCCCCCeEEEEEcc-CCCeeEEEecCC------CeEEEEEccCCCCceeEEeecc--CCCeeEEEecCCCCCeEEEeeC
Q 016547          165 YNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--DADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                       ..+...+..+.|+| ++ ..++..+.+      ..|.+||+..++   ...+..+  ...+..++|+| +++.|+.++.
T Consensus       184 -~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~  257 (396)
T 3c5m_A          184 -HQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIP-DGSAMAYVSY  257 (396)
T ss_dssp             -EEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred             -ccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECC-CCCEEEEEec
Confidence             34566789999999 66 545544333      468888887655   2222222  23578899999 8988777765


Q ss_pred             C-----CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC-CCCeeEEEec---------------CCCeEEEEeCC
Q 016547          236 D-----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSA---------------EDGLLNIWDYE  294 (387)
Q Consensus       236 d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~---------------~d~~i~vwd~~  294 (387)
                      +     +.|++||+.+      ++...... ... .. +.|+| +|+.++.+++               .+..|.+||+.
T Consensus       258 ~~~~~~~~l~~~d~~~------g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          258 FKGQTDRVIYKANPET------LENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             ETTTCCEEEEEECTTT------CCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             CCCCccceEEEEECCC------CCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            4     4599999986      44322221 112 23 89999 9996543221               34789999987


Q ss_pred             CCCceeccCCCCCCCCceeeeeeccCCC-----------CeeEEEEccCCCeEEEEec
Q 016547          295 KVGKKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~s~s  341 (387)
                      ....                ..+..+..           .+..++|+|++++++.+..
T Consensus       329 ~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          329 AKSA----------------QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             TTBC----------------CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             cCce----------------EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence            6421                11222322           2567899999998876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=2.1e-16  Score=146.96  Aligned_cols=250  Identities=9%  Similarity=-0.079  Sum_probs=163.5

Q ss_pred             cCCCcEEEEEecCCCCcEEE-----EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           29 IHPGEVNRIRELPQNTKIVA-----THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~-----t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      +|...+..++|+| ++++||     .|+.+.+|++||+.+++...          ...+....   ...++|+|||+.|+
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----------~~~~~~~~---~~~~~wspDg~~l~  183 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----------VDVIEGGK---YATPKWTPDSKGFY  183 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS----------SCCBSCCT---TCCCEECTTSSEEE
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC----------CcccCccc---ccceEEecCCCEEE
Confidence            3556799999999 888888     45556789999999984210          00111111   15789999999999


Q ss_pred             EecCCCe-------------EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547          104 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus       104 s~~~d~~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      .++.|..             |++|++.++....                                    ..+.....+..
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~  227 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPT  227 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTT
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCE
Confidence            9888766             9999987643110                                    01112233556


Q ss_pred             CeEEEEEccCCCeeEEEecCCC----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee---CCCeEEEEE
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFD  243 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~~~d  243 (387)
                      .+..+.|+|+| ++++..+.++    .|.+||..+++   ...+..+...+....+ + ++.+++.+.   .++.|.+||
T Consensus       228 ~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          228 TFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             CEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEB
T ss_pred             EEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEe
Confidence            78899999999 5565555444    56666654444   3334445555666666 4 455444443   257899999


Q ss_pred             eccCCCCCCCCc--eEEe-ccc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          244 RRNLTSNGVGSP--INKF-EGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       244 ~~~~~~~~~~~~--~~~~-~~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      +.+      +..  ...+ ..+ ...+..++|+ ++ .++++...|+..+||.+...+.              ....+..
T Consensus       302 ~~~------~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~--------------~~~~l~~  359 (695)
T 2bkl_A          302 PAK------PARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK--------------PVRTVQL  359 (695)
T ss_dssp             TTB------CSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC--------------EEEECCC
T ss_pred             CCC------CCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC--------------eeEEecC
Confidence            876      332  2333 323 4568888888 44 4778888999988887663221              1222333


Q ss_pred             C-CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          320 H-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       320 ~-~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      + .+.+..++++|+++.++++.+    +....++|++||+..
T Consensus       360 ~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          360 PGVGAASNLMGLEDLDDAYYVFT----SFTTPRQIYKTSVST  397 (695)
T ss_dssp             SSSSEECCCBSCTTCSEEEEEEE----ETTEEEEEEEEETTT
T ss_pred             CCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence            3 567788899999988887776    456678999999873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=1.6e-15  Score=129.11  Aligned_cols=242  Identities=10%  Similarity=0.144  Sum_probs=149.9

Q ss_pred             CCcEEEEEecCCCCcEEEEe---------cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           31 PGEVNRIRELPQNTKIVATH---------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      ...+...++   +++.++..         ..++.|.+||+.++            +. ..+    . .+..+.|+|||++
T Consensus        14 ~~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~------------~~-~~l----~-~~~~~~~SpDg~~   72 (347)
T 2gop_A           14 FAYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNN------------AR-RFI----E-NATMPRISPDGKK   72 (347)
T ss_dssp             SCEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTC------------CE-EEE----E-SCEEEEECTTSSE
T ss_pred             eEEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCC------------ce-EEc----c-cCCCeEECCCCCE
Confidence            344566666   45555543         12567999999887            22 223    2 4679999999999


Q ss_pred             EEEecCC---Ce--EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547          102 VLSGGKD---KS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus       102 l~s~~~d---~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      |+.++.+   +.  |.+|++.++..                                         ..+..+.. +..+.
T Consensus        73 la~~~~~~~~~~~~l~~~~~~~g~~-----------------------------------------~~l~~~~~-~~~~~  110 (347)
T 2gop_A           73 IAFMRANEEKKVSEIWVADLETLSS-----------------------------------------KKILEAKN-IRSLE  110 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTTEE-----------------------------------------EEEEEESE-EEEEE
T ss_pred             EEEEEeccCCCcceEEEEECCCCce-----------------------------------------EEEEcCCC-cccee
Confidence            9887643   34  66677654321                                         11222223 89999


Q ss_pred             EccCCCeeEEEecC---------------------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCe
Q 016547          177 FCPSSAQEFCSVGD---------------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL  229 (387)
Q Consensus       177 ~~~~~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (387)
                      |+|++ +.|+.++.                           ...|.+||+.+++  ....+.. . .+..+.|+| ++ +
T Consensus       111 wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp-dg-~  183 (347)
T 2gop_A          111 WNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR-DK-I  183 (347)
T ss_dssp             ECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET-TE-E
T ss_pred             ECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC-Ce-E
Confidence            99999 55555542                           2579999998776  2133333 3 788999999 88 7


Q ss_pred             EEEeeCCC-------eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC-------CCeEEEEeCCC
Q 016547          230 ILTGSADN-------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-------DGLLNIWDYEK  295 (387)
Q Consensus       230 l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~-------d~~i~vwd~~~  295 (387)
                      ++++..++       ...+|.+.+      ++. ..+..+ ..+..+  +|+|++++..+..       ...|.+||  .
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~~~d~------~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~  251 (347)
T 2gop_A          184 VVNVPHREIIPQYFKFWDIYIWED------GKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G  251 (347)
T ss_dssp             EEEEECCCSSCCSSCCEEEEEEET------TEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred             EEEEecccccccccccccEEEeCC------Cce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C
Confidence            77776542       445555543      443 233333 445444  9999976544433       24688888  3


Q ss_pred             CCceeccCCCCCCCCceeeeeeccCCCCeeE-EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          296 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      . +              .......+...+.. +.|+ ++  ++++++.       ++.++|| +.      +++. ..+.
T Consensus       252 ~-~--------------~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~-------~~~~~l~-~~------~g~~-~~~~  298 (347)
T 2gop_A          252 K-E--------------VMGILDEVDRGVGQAKIKD-GK--VYFTLFE-------EGSVNLY-IW------DGEI-KPIA  298 (347)
T ss_dssp             S-C--------------EEESSTTCCSEEEEEEEET-TE--EEEEEEE-------TTEEEEE-EE------SSSE-EEEE
T ss_pred             C-c--------------eEeccccCCcccCCccEEc-Cc--EEEEEec-------CCcEEEE-Ec------CCce-EEEe
Confidence            2 1              12222445667776 8999 77  5554444       4899999 87      3443 3334


Q ss_pred             ccCceEEEeeecC
Q 016547          375 KFKAHVISCTSKP  387 (387)
Q Consensus       375 ~~~~~v~~~~f~P  387 (387)
                      .+...|.+++|+|
T Consensus       299 ~~~~~v~~~~~s~  311 (347)
T 2gop_A          299 KGRHWIMGFDVDE  311 (347)
T ss_dssp             CSSSEEEEEEESS
T ss_pred             cCCCeEEeeeeeC
Confidence            4577899999886

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=2.8e-13  Score=112.52  Aligned_cols=241  Identities=7%  Similarity=-0.010  Sum_probs=165.0

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCCCCEEEEecC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .+...+.++++.+ +++++++...++.|.+||.. +            ..... +..+. ..+.+++++++|..+++...
T Consensus        12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~------------~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~   76 (299)
T 2z2n_A           12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-G------------KITEYPLPTPD-AKVMCLTISSDGEVWFTENA   76 (299)
T ss_dssp             SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-C------------CEEEEECSSTT-CCEEEEEECTTSCEEEEETT
T ss_pred             CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-C------------CeEEecCCccc-CceeeEEECCCCCEEEeCCC
Confidence            4567899999998 78888777768899999987 5            11111 11222 25789999999998888777


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      ++.|..||.......                                        ..+......+.++++.+++ .++++
T Consensus        77 ~~~i~~~~~~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~  115 (299)
T 2z2n_A           77 ANKIGRITKKGIIKE----------------------------------------YTLPNPDSAPYGITEGPNG-DIWFT  115 (299)
T ss_dssp             TTEEEEECTTSCEEE----------------------------------------EECSSTTCCEEEEEECTTS-CEEEE
T ss_pred             CCeEEEECCCCcEEE----------------------------------------EeCCCcCCCceeeEECCCC-CEEEE
Confidence            889999987521000                                        0011233468899999988 77777


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAV  266 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i  266 (387)
                      ...++.|..||. +++. ...........+..+++++ +++++++...++.|..||. +      ++.... .......+
T Consensus       116 ~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~  185 (299)
T 2z2n_A          116 EMNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-S------GDITEFKIPTPASGP  185 (299)
T ss_dssp             ETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCE
T ss_pred             ecCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-C------CcEEEeeCCCCCCcc
Confidence            777889999998 4441 1122223456789999999 8888777777889999998 4      443322 23334568


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .++++++++. ++++...++.|.+||. .....              ......+...+.+++++++|..++ +.      
T Consensus       186 ~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v-~~------  242 (299)
T 2z2n_A          186 VGITKGNDDA-LWFVEIIGNKIGRITT-SGEIT--------------EFKIPTPNARPHAITAGAGIDLWF-TE------  242 (299)
T ss_dssp             EEEEECTTSS-EEEEETTTTEEEEECT-TCCEE--------------EEECSSTTCCEEEEEECSTTCEEE-EE------
T ss_pred             eeEEECCCCC-EEEEccCCceEEEECC-CCcEE--------------EEECCCCCCCceeEEECCCCCEEE-ec------
Confidence            8999999988 5667666889999998 43211              112233456789999999987444 32      


Q ss_pred             CCCCceEEEEecC
Q 016547          347 TGGGGTLQIWRMS  359 (387)
Q Consensus       347 g~~dg~i~iw~~~  359 (387)
                       ..++.|..||..
T Consensus       243 -~~~~~i~~~d~~  254 (299)
T 2z2n_A          243 -WGANKIGRLTSN  254 (299)
T ss_dssp             -TTTTEEEEEETT
T ss_pred             -cCCceEEEECCC
Confidence             234789999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=1.8e-14  Score=119.03  Aligned_cols=198  Identities=14%  Similarity=0.181  Sum_probs=142.4

Q ss_pred             CCCcEEEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      |...+.++++.+.+++++++... ++.|.+||. ++            +....+.......+..++++++|+.+++...+
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g------------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  141 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG------------QFVRKFGATILQHPRGVTVDNKGRIIVVECKV  141 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS------------CEEEEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC------------cEEEEecCccCCCceEEEEeCCCCEEEEECCC
Confidence            44678999995437777777643 789999994 44            23333432222246899999999988888888


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee--cCCCCCeEEEEEccCCCeeEE
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      +.|.+||......                                         ..+  ..+...+.++++.+++ ++++
T Consensus       142 ~~i~~~~~~g~~~-----------------------------------------~~~~~~~~~~~p~~i~~~~~g-~l~v  179 (286)
T 1q7f_A          142 MRVIIFDQNGNVL-----------------------------------------HKFGCSKHLEFPNGVVVNDKQ-EIFI  179 (286)
T ss_dssp             TEEEEECTTSCEE-----------------------------------------EEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             CEEEEEcCCCCEE-----------------------------------------EEeCCCCccCCcEEEEECCCC-CEEE
Confidence            9999999642110                                         111  1334568999999998 7888


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeecc--CCCeeEEEecCCCCCeEEEeeCCC-eEEEEEeccCCCCCCCCceEEecccc
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAH--DADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      +...++.|++||... +  ....+..+  ...+..+++++ +++++++...++ .|.+||..       ++.+..+..+.
T Consensus       180 ~~~~~~~i~~~~~~g-~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~  248 (286)
T 1q7f_A          180 SDNRAHCVKVFNYEG-Q--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKV  248 (286)
T ss_dssp             EEGGGTEEEEEETTC-C--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESS
T ss_pred             EECCCCEEEEEcCCC-C--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccC
Confidence            888899999999743 3  33444332  35789999999 888888887776 99999954       56666665443


Q ss_pred             --ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          264 --AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       264 --~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                        ..+.+++++|+|+ ++++ +.|+.|++|++..
T Consensus       249 ~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          249 KHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred             CCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence              2478999999997 5666 4689999999865

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=1.5e-14  Score=121.69  Aligned_cols=254  Identities=9%  Similarity=-0.005  Sum_probs=165.9

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      .....+.+.  +++++++...++.|.+||..++            +.+..+....  ....++++++++..++...++.|
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~------------~~~~~i~~~~--~p~~i~~~~~g~lyv~~~~~~~v  107 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTF------------KEVGRITGFT--SPRYIHFLSDEKAYVTQIWDYRI  107 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTC------------CEEEEEECCS--SEEEEEEEETTEEEEEEBSCSEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECccc------------EEEEEcCCCC--CCcEEEEeCCCeEEEEECCCCeE
Confidence            446777763  4667777777899999999988            5555554433  35799998888555555478999


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-C
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D  190 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~  190 (387)
                      .+||..+..........                                   ...+.......+++ ..+ .++++.. .
T Consensus       108 ~~iD~~t~~~~~~i~~g-----------------------------------~~~~~~~~p~~i~~-~~~-~lyv~~~~~  150 (328)
T 3dsm_A          108 FIINPKTYEITGYIECP-----------------------------------DMDMESGSTEQMVQ-YGK-YVYVNCWSY  150 (328)
T ss_dssp             EEEETTTTEEEEEEECT-----------------------------------TCCTTTCBCCCEEE-ETT-EEEEEECTT
T ss_pred             EEEECCCCeEEEEEEcC-----------------------------------CccccCCCcceEEE-ECC-EEEEEcCCC
Confidence            99999865432111000                                   00011123445666 343 5566554 4


Q ss_pred             CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----------CeEEEEEeccCCCCCCCCceEEec
Q 016547          191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------NSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      ++.|.++|+.+++  ....+.. ......++++| ++++++++..+          +.|.++|..+      ++....+.
T Consensus       151 ~~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~  220 (328)
T 3dsm_A          151 QNRILKIDTETDK--VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFK  220 (328)
T ss_dssp             CCEEEEEETTTTE--EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEE
T ss_pred             CCEEEEEECCCCe--EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEe
Confidence            8899999999876  3444433 34567899999 88877777655          7899999987      66665554


Q ss_pred             cc-cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          261 GH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       261 ~~-~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      .. ......++|+|+++.++++.+   .|.+||..+......          . .  ..........++++|++..+.++
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~----------~-~--~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR----------P-F--LEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSS----------C-S--BCCCSSCEEEEEECTTTCCEEEE
T ss_pred             cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeee----------e-e--ecCCCCceEEEEEcCCCCeEEEE
Confidence            32 236789999999998765433   899999976422100          0 0  11124568899999977777776


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      ...|   -..++.|.+||..       ++.+.++.
T Consensus       285 ~~~~---y~~~~~V~v~d~~-------g~~~~~i~  309 (328)
T 3dsm_A          285 DAID---YQQQGIVYRYSPQ-------GKLIDEFY  309 (328)
T ss_dssp             ECTT---SSSEEEEEEECTT-------CCEEEEEE
T ss_pred             cccc---cccCCEEEEECCC-------CCEEEEEE
Confidence            5111   0335899999987       55555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=6.3e-15  Score=125.40  Aligned_cols=212  Identities=14%  Similarity=0.110  Sum_probs=135.7

Q ss_pred             CcEEEEEecCCCCcEEEEecCC---C--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           32 GEVNRIRELPQNTKIVATHTDS---P--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~d---g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      ..+..++|+| +++.||..+.+   +  .|.+||+.++            +...... +..  +..+.|+|+|+.|+.++
T Consensus        59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g------------~~~~l~~-~~~--~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETL------------SSKKILE-AKN--IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTT------------EEEEEEE-ESE--EEEEEECTTSSEEEEEE
T ss_pred             ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCC------------ceEEEEc-CCC--ccceeECCCCCEEEEEE
Confidence            5678899999 88888776643   3  3777888776            3333332 222  78999999999988876


Q ss_pred             CC---------------------------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCC
Q 016547          107 KD---------------------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus       107 ~d---------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (387)
                      .+                           ..|.+||+.++.                                       
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---------------------------------------  163 (347)
T 2gop_A          123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---------------------------------------  163 (347)
T ss_dssp             ECCCC---------CCCC---------CEEEEEEEETTTTE---------------------------------------
T ss_pred             ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---------------------------------------
Confidence            32                           356666665432                                       


Q ss_pred             CCceeecCCCCCeEEEEEccCCCeeEEEecCC------C-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEE
Q 016547          160 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD------S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  232 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (387)
                       .+..+.. . .+..+.|+|++  +++++..+      . ...+|.+.+++   ...+..+ ..+..+  +| +++.|+.
T Consensus       164 -~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~~~-~~~~~~--sp-dg~~l~~  231 (347)
T 2gop_A          164 -VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMFEK-VSFYAV--DS-DGERILL  231 (347)
T ss_dssp             -EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEEEE-ESEEEE--EE-CSSCEEE
T ss_pred             -EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc---eEEeccC-cceeeE--CC-CCCEEEE
Confidence             1012222 2 67889999998  56665443      2 44555544333   2333334 444444  89 8988887


Q ss_pred             eeCC--------CeEEEEEeccCCCCCCCCceEEeccccceEEE-EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccC
Q 016547          233 GSAD--------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  303 (387)
Q Consensus       233 ~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~  303 (387)
                      ++.+        ..|.+||  +      ++.......+...+.. +.|+ ++  ++++++.++.++|| +.. ++.    
T Consensus       232 ~~~~~~~~~~~~~~l~~~d--~------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~~----  294 (347)
T 2gop_A          232 YGKPEKKYMSEHNKLYIYD--G------KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD-GEI----  294 (347)
T ss_dssp             EECCSSSCCCSSCEEEEEC--S------SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES-SSE----
T ss_pred             EEccccCCccccceEEEEC--C------CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC-Cce----
Confidence            7754        3677777  4      5554444556778886 9999 77  56788889999999 873 221    


Q ss_pred             CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                                 ..+..+...|.+++|+|  . ++++++
T Consensus       295 -----------~~~~~~~~~v~~~~~s~--~-~~~~~~  318 (347)
T 2gop_A          295 -----------KPIAKGRHWIMGFDVDE--I-VVYLKE  318 (347)
T ss_dssp             -----------EEEECSSSEEEEEEESS--S-EEEEEE
T ss_pred             -----------EEEecCCCeEEeeeeeC--c-EEEEEc
Confidence                       22234467899999999  4 444433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=2.4e-13  Score=113.89  Aligned_cols=246  Identities=6%  Similarity=0.027  Sum_probs=159.2

Q ss_pred             cCCCcEEEEEecCCCCcEEEE-------ecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe----ccCCCceEEEEECC
Q 016547           29 IHPGEVNRIRELPQNTKIVAT-------HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT----GHQDNAEFALAMCP   97 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t-------~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~v~~~~~~~   97 (387)
                      ..-....+++|.+ +++++++       +..++.|.+||..+++            ......    ++.. .+.++++++
T Consensus        15 ~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~-~~~~i~~~~   80 (314)
T 1pjx_A           15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGK------------KTVICKPEVNGYGG-IPAGCQCDR   80 (314)
T ss_dssp             CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCC------------EEEEECCEETTEEC-CEEEEEECS
T ss_pred             ccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCc------------EEEEEecccCCCCC-CCceEEEec
Confidence            3345568999997 7788888       6778899999987762            211111    2333 478999999


Q ss_pred             C-CCEEEEecCCCeEEEEEcCCCcCccc-cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547           98 T-EPYVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus        98 ~-~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      + ++++++.. .+.|.+||.+ +..... ...                                    ........+.++
T Consensus        81 ~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~------------------------------------~~~~~~~~~~~i  122 (314)
T 1pjx_A           81 DANQLFVADM-RLGLLVVQTD-GTFEEIAKKD------------------------------------SEGRRMQGCNDC  122 (314)
T ss_dssp             SSSEEEEEET-TTEEEEEETT-SCEEECCSBC------------------------------------TTSCBCBCCCEE
T ss_pred             CCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc------------------------------------CCCccccCCcCE
Confidence            9 76555544 4478889876 322110 000                                    000112457889


Q ss_pred             EEccCCCeeEEEecCC---------------CeEEEEEccCCCCceeEEeeccCCCeeEEEec----CCCCCeEEEe-eC
Q 016547          176 TFCPSSAQEFCSVGDD---------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWN----PLDDNLILTG-SA  235 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~-~~  235 (387)
                      ++.+++ +++++...+               +.|..||.. ++  . .....+......++++    | +++.++++ ..
T Consensus       123 ~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~-~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~  196 (314)
T 1pjx_A          123 AFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--M-IQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETP  196 (314)
T ss_dssp             EECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--E-EEEEEEESSEEEEEEEECTTS-CEEEEEEEETT
T ss_pred             EECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CC--E-EEeccCCCCcceEEEecccCC-CCCEEEEEECC
Confidence            999998 666666544               567777765 43  2 2222334456889999    9 87655444 56


Q ss_pred             CCeEEEEEeccCCCCCCCC-----ceEEecccc-ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGS-----PINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  309 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  309 (387)
                      ++.|.+||....     +.     ....+..+. ..+..++++++|. ++++...++.|.+||..+...           
T Consensus       197 ~~~i~~~~~~~~-----g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~-----------  259 (314)
T 1pjx_A          197 TKKLWSYDIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP-----------  259 (314)
T ss_dssp             TTEEEEEEEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC-----------
T ss_pred             CCeEEEEECCCC-----CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE-----------
Confidence            789999998621     22     223333333 5678999999997 566666688999999874321           


Q ss_pred             CceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          310 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                          ...+..+...+.+++|+|+++.|+++...       ++.|..|++..
T Consensus       260 ----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-------~~~l~~~~~~~  299 (314)
T 1pjx_A          260 ----KMRIRCPFEKPSNLHFKPQTKTIFVTEHE-------NNAVWKFEWQR  299 (314)
T ss_dssp             ----SEEEECSSSCEEEEEECTTSSEEEEEETT-------TTEEEEEECSS
T ss_pred             ----eEEEeCCCCCceeEEECCCCCEEEEEeCC-------CCeEEEEeCCC
Confidence                22233455688999999999877765443       38999999873

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=1.5e-14  Score=134.58  Aligned_cols=222  Identities=8%  Similarity=-0.033  Sum_probs=139.9

Q ss_pred             ceEEEEECCCCCEEE-----EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547           89 AEFALAMCPTEPYVL-----SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  163 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~-----s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (387)
                      .+..++|||||++|+     .|+.+..|++||+.++.....                                      .
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--------------------------------------~  163 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--------------------------------------D  163 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--------------------------------------C
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--------------------------------------c
Confidence            588999999999998     555668999999987543100                                      0


Q ss_pred             eecCCCCCeEEEEEccCCCeeEEEecCCCe-------------EEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCC
Q 016547          164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSC-------------LILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDN  228 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~  228 (387)
                      .+...  ....++|+||| +.|+.++.+..             |++|++.++...  .+.....+...+..+.|+| +++
T Consensus       164 ~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~  239 (695)
T 2bkl_A          164 VIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGK  239 (695)
T ss_dssp             CBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSC
T ss_pred             ccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCC
Confidence            01111  12578999999 66777776665             999999877632  2333334556788999999 999


Q ss_pred             eEEEeeCCC----eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec---CCCeEEEEeCCCCCceec
Q 016547          229 LILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       229 ~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~---~d~~i~vwd~~~~~~~~~  301 (387)
                      +|+.++.++    .|.++|...      + ....+..+...+....+ +++. +++...   .++.|.+||+......  
T Consensus       240 ~l~~~~~~~~~~~~l~~~~~~~------~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~--  308 (695)
T 2bkl_A          240 YLFVYILRGWSENDVYWKRPGE------K-DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA--  308 (695)
T ss_dssp             CEEEEEEETTTEEEEEEECTTC------S-SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG--
T ss_pred             EEEEEEeCCCCceEEEEEcCCC------C-ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc--
Confidence            888887666    566665433      3 34444445555556666 6676 665654   3588999999764321  


Q ss_pred             cCCCCCCCCceeeeeeccC-CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc-Cce
Q 016547          302 QGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAH  379 (387)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~  379 (387)
                                ........+ ...+..++|+  +..++++...|       +..+||.++.     .++.+..+..+ .+.
T Consensus       309 ----------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~~~~~~  364 (695)
T 2bkl_A          309 ----------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD-------ATSEVRVATL-----KGKPVRTVQLPGVGA  364 (695)
T ss_dssp             ----------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEET-------TEEEEEEEET-----TCCEEEECCCSSSSE
T ss_pred             ----------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCeeEEecCCCCeE
Confidence                      011112222 4467888887  45677765555       8888887652     13333444433 445


Q ss_pred             EEEeeecC
Q 016547          380 VISCTSKP  387 (387)
Q Consensus       380 v~~~~f~P  387 (387)
                      |..++++|
T Consensus       365 v~~~~~s~  372 (695)
T 2bkl_A          365 ASNLMGLE  372 (695)
T ss_dssp             ECCCBSCT
T ss_pred             EEEeecCC
Confidence            55555554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=3.3e-14  Score=118.04  Aligned_cols=223  Identities=9%  Similarity=0.017  Sum_probs=150.9

Q ss_pred             eEEEeccCCCceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           79 DLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        79 ~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      ...+..+.. ...+++|+|+++ .++++..++.|..|+..++                                      
T Consensus        20 ~~~l~~~~~-~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------------------------------------   60 (296)
T 3e5z_A           20 ARRLADGFT-WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------------------------------------   60 (296)
T ss_dssp             CEEEECCCS-SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------------------------------------
T ss_pred             EEEEecCCc-cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------------------------------------
Confidence            344444444 467999999998 7778888999999998753                                      


Q ss_pred             CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEE-
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT-  232 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~-  232 (387)
                          ...+..+...+.++++++++ .++++...++.|.+||..+++.  ......    ....+..++++| +++++++ 
T Consensus        61 ----~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd  132 (296)
T 3e5z_A           61 ----LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEW--ESIADSFEGKKLNSPNDVCLAP-DGSLWFSD  132 (296)
T ss_dssp             ----EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCE--EEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred             ----eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcE--EEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence                13344456678999999998 6777777778999999977762  222111    123567899999 8988887 


Q ss_pred             ---eeCC-----------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          233 ---GSAD-----------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       233 ---~~~d-----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                         |+.+           +.-.||.+..      ...+..+..+......++|+|+++.+ ++.+.++.|.+||+...+.
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~  205 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAP------DGTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGE  205 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECT------TSCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSC
T ss_pred             CccccccccccccccccCCCcEEEEECC------CCCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCc
Confidence               3310           1124444443      22233444455667899999999976 7888899999999973222


Q ss_pred             e-eccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC
Q 016547          299 K-VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  377 (387)
Q Consensus       299 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  377 (387)
                      . ..            ...+..+...+..++++++|..++++          ++.|.+|+..       ++.+..+..+.
T Consensus       206 ~~~~------------~~~~~~~~~~p~~i~~d~~G~l~v~~----------~~~v~~~~~~-------g~~~~~~~~~~  256 (296)
T 3e5z_A          206 TEYQ------------GVHFTVEPGKTDGLRVDAGGLIWASA----------GDGVHVLTPD-------GDELGRVLTPQ  256 (296)
T ss_dssp             EEEE------------EEEECCSSSCCCSEEEBTTSCEEEEE----------TTEEEEECTT-------SCEEEEEECSS
T ss_pred             CcCC------------CeEeeCCCCCCCeEEECCCCCEEEEc----------CCeEEEECCC-------CCEEEEEECCC
Confidence            1 00            11112345567889999999855532          3899999976       55666666666


Q ss_pred             ceEEEeee
Q 016547          378 AHVISCTS  385 (387)
Q Consensus       378 ~~v~~~~f  385 (387)
                      . +.+++|
T Consensus       257 ~-~~~~~f  263 (296)
T 3e5z_A          257 T-TSNLCF  263 (296)
T ss_dssp             C-CCEEEE
T ss_pred             C-ceeEEE
Confidence            6 778877

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=1.2e-13  Score=123.66  Aligned_cols=237  Identities=9%  Similarity=0.047  Sum_probs=157.9

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcC--CCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--DHI  120 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~  120 (387)
                      .+.++++...+++|.++|..++            +.+..+....  .+..+.|+|||+++++++.|+.|.+||+.  +..
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~  231 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT  231 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred             CceEEEEeCCCCeEEEEECCCC------------eEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence            4567778888999999999998            5565665443  35799999999999999999999999985  321


Q ss_pred             CccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc----cCCCeeEEEecCCCeEEE
Q 016547          121 TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC----PSSAQEFCSVGDDSCLIL  196 (387)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i  196 (387)
                      .                                        +..+... .....++|+    |+|...+++...++.|.+
T Consensus       232 ~----------------------------------------v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          232 T----------------------------------------VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             E----------------------------------------EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred             E----------------------------------------eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence            1                                        1222222 235789999    698555555666799999


Q ss_pred             EEccCCCCceeEEeec----------c-CCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          197 WDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       197 wd~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      +|..+.+  .+..+..          | ...+..+..++....+++....+|.|.++|.....    ...+..+. ....
T Consensus       271 iD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~  343 (567)
T 1qks_A          271 MDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERF  343 (567)
T ss_dssp             EETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSS
T ss_pred             EECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-cccc
Confidence            9988876  3333321          1 12567888888334555566667999999987621    11222332 3345


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee--eccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ...+.|+|++++++++...++.|.++|+.+.... .           .+..  ...|.+.-..+ ++|++..+.++..  
T Consensus       344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~-~-----------~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~--  408 (567)
T 1qks_A          344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV-A-----------IEDTGGQTPHPGRGANF-VHPTFGPVWATSH--  408 (567)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE-E-----------EEECSSSSBCCTTCEEE-EETTTEEEEEEEB--
T ss_pred             ccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE-E-----------EEeccCcCCCCccceee-ECCCCCcEEEeCC--
Confidence            6788999999998888878899999999975221 1           1111  11233221122 5887666665432  


Q ss_pred             CCCCCCCceEEEEecCC
Q 016547          344 CDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~  360 (387)
                          ..+++|.++|...
T Consensus       409 ----~g~~~Vsvid~~~  421 (567)
T 1qks_A          409 ----MGDDSVALIGTDP  421 (567)
T ss_dssp             ----SSSSEEEEEECCT
T ss_pred             ----CCCCeEEEecCCC
Confidence                2348999999883

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=2.4e-14  Score=133.52  Aligned_cols=228  Identities=9%  Similarity=-0.011  Sum_probs=146.1

Q ss_pred             ceEEEEECCCCCEEEEecCCC-----eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547           89 AEFALAMCPTEPYVLSGGKDK-----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  163 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (387)
                      .+..++|||||++|+.++.++     .|++||+.++....                                       .
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~---------------------------------------~  166 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------------------------------------D  166 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------------------------------------E
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc---------------------------------------c
Confidence            478999999999998765433     89999998653211                                       0


Q ss_pred             eecCCCCCeEEEEEccCCCeeEEEecCCCe----------------EEEEEccCCCCceeEE--eeccCCCeeEEEecCC
Q 016547          164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSC----------------LILWDARVGTSPVIKV--EKAHDADLHCVDWNPL  225 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~~~~  225 (387)
                      .+.  ...+..++|+||+ +.|+.++.++.                |++|++.+++......  ...+...+..+.|+| 
T Consensus       167 ~~~--~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-  242 (710)
T 2xdw_A          167 VLE--RVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-  242 (710)
T ss_dssp             EEE--EECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-
T ss_pred             ccc--CcccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-
Confidence            111  1125679999999 56666666554                9999998765321222  223455678999999 


Q ss_pred             CCCeEEEeeC-----CCeEEEEEeccCCCCC-CCCceEEeccccceEEEEEEcCCCCeeEEEecCC---CeEEEEeCCCC
Q 016547          226 DDNLILTGSA-----DNSVRMFDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKV  296 (387)
Q Consensus       226 ~~~~l~~~~~-----dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d---~~i~vwd~~~~  296 (387)
                      ++++|+.++.     +..|.+||+.+..... .......+..+...+.. .|+|+|..+++.+..+   +.|.+||+...
T Consensus       243 Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            9998888765     5689999987510000 01134555555555544 4888998776565433   47999998764


Q ss_pred             CceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCCCeEEEEecCCCCCCCCCc--eEEEEecCCCcccccchhhhh
Q 016547          297 GKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGG--TLQIWRMSDLIYRPQDEVLAE  372 (387)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~s~s~d~~tg~~dg--~i~iw~~~~~~~~~~~~~~~~  372 (387)
                      ...             ....+..|..  .+..++|++ +..++++...|       +  .|.+|++.      +++.+..
T Consensus       322 ~~~-------------~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~-------g~~~l~~~~~~------~g~~~~~  374 (710)
T 2xdw_A          322 EES-------------KWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHD-------VKNTLQLHDLA------TGALLKI  374 (710)
T ss_dssp             CGG-------------GCEEEECCCSSCEEEEEEEET-TTEEEEEEEET-------TEEEEEEEETT------TCCEEEE
T ss_pred             Ccc-------------cceeccCCCCCCeEEEEEEEc-CCEEEEEEEEC-------CEEEEEEEECC------CCCEEEe
Confidence            211             0122233333  678899985 45666655544       6  45666765      4556666


Q ss_pred             hhccCceEEEeeecC
Q 016547          373 LEKFKAHVISCTSKP  387 (387)
Q Consensus       373 ~~~~~~~v~~~~f~P  387 (387)
                      +..+.+.|..++++|
T Consensus       375 l~~~~~~v~~~~~s~  389 (710)
T 2xdw_A          375 FPLEVGSVVGYSGQK  389 (710)
T ss_dssp             ECCCSSEEEEEECCT
T ss_pred             cCCCCceEEEEecCC
Confidence            776777788888765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=8.2e-14  Score=113.83  Aligned_cols=213  Identities=9%  Similarity=0.035  Sum_probs=151.0

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      .+++|++++.|+.|.+||.+++            +.+..+..+....+.++.++|+|+++++  .++.|..||. +++..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~   68 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK------------EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL   68 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT------------EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCC------------eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE
Confidence            4689999999999999999888            6667777665224689999999998883  4778999987 44322


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccCCCeeEEEecC-CCeEEEEEcc
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGD-DSCLILWDAR  200 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  200 (387)
                                                              ..+..+ ...+.++.+.++| +++++.+. ++.|..+|. 
T Consensus        69 ----------------------------------------W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-  106 (276)
T 3no2_A           69 ----------------------------------------WNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-  106 (276)
T ss_dssp             ----------------------------------------EEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred             ----------------------------------------EEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence                                                    222222 2467889999999 67777666 778888876 


Q ss_pred             CCCCceeEEee------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCC
Q 016547          201 VGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  274 (387)
Q Consensus       201 ~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  274 (387)
                      +++  .+..+.      .+......+++.+ +++++++...++.|..||..       ++.+.++... ..+.++.+.++
T Consensus       107 ~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~  175 (276)
T 3no2_A          107 KGE--VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDN  175 (276)
T ss_dssp             TSC--EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTT
T ss_pred             CCC--EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCC
Confidence            444  233322      1222455677888 99999999999999999976       6777777754 34556788899


Q ss_pred             CCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC------CCCeeEEEEccCCCeEEEE
Q 016547          275 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH------RDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       275 ~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~s  339 (387)
                      +.. ++++..+++|..+|..++..               +..+..+      ...+..+...++|..+++.
T Consensus       176 g~~-~v~~~~~~~v~~~d~~tG~~---------------~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          176 GDC-LVACGDAHCFVQLNLESNRI---------------VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SCE-EEECBTTSEEEEECTTTCCE---------------EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCE-EEEeCCCCeEEEEeCcCCcE---------------EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            885 55777788999999886532               2232221      1247888888988766643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=7.9e-13  Score=118.47  Aligned_cols=268  Identities=10%  Similarity=0.081  Sum_probs=176.4

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEecc--CCCCcccccCCCCCCCeEEEeccCCCceEEEEEC----CCC
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC----PTE   99 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~----~~~   99 (387)
                      ..+.....+..+.|+| +++++.+++.|+.|.+||+.  +.            +.+..+.....  ...++|+    |||
T Consensus       191 ~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~------------~~v~~i~~G~~--P~~ia~s~~~~pDG  255 (567)
T 1qks_A          191 TVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP------------TTVAEIKIGSE--ARSIETSKMEGWED  255 (567)
T ss_dssp             EEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------CEEEEEECCSE--EEEEEECCSTTCTT
T ss_pred             EEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC------------cEeEEEecCCC--CceeEEccccCCCC
Confidence            3344555678999999 88888888999999999996  55            44555554433  4699999    699


Q ss_pred             CEEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-CeEEEEE
Q 016547          100 PYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-TVEDVTF  177 (387)
Q Consensus       100 ~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  177 (387)
                      ++++++.. +++|.++|..+............                              .......|.. .+..+..
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~------------------------------~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM------------------------------TYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEE------------------------------CTTTCCEESCCCEEEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEecccc------------------------------ccccccccCCCceEEEEE
Confidence            99887664 59999999876433221110000                              0000001222 5778888


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCce
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      +++++.+++....+|.|.++|....+......+ ........+.|+| ++++++++. .++.|.++|+.+      ++.+
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t------~kl~  377 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE------GKLV  377 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC------CcEE
Confidence            888777788888889999999877653222222 3445677899999 888877665 578999999998      6665


Q ss_pred             EEecc-----ccc-eEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE
Q 016547          257 NKFEG-----HSA-AVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  329 (387)
Q Consensus       257 ~~~~~-----~~~-~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (387)
                      ..+..     |.+ .+. + ++|++..+++++. .++.|.++|....+.+        ....+.+..+......-..+..
T Consensus       378 ~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--------~~~~kvv~~i~~~g~g~~~i~~  447 (567)
T 1qks_A          378 AIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--------DNAWKILDSFPALGGGSLFIKT  447 (567)
T ss_dssp             EEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--------TTBTSEEEEEECSCSCCCCEEC
T ss_pred             EEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--------cccCEEEEEEecCCCCCEEEEe
Confidence            55543     322 222 2 5787665666654 4689999998863211        0112345555544344456789


Q ss_pred             ccCCCeEEEEecCCCCCCCC----CceEEEEecCCC
Q 016547          330 NASDPWTVVSVSDDCDSTGG----GGTLQIWRMSDL  361 (387)
Q Consensus       330 ~~~~~~l~~s~s~d~~tg~~----dg~i~iw~~~~~  361 (387)
                      +|+++++.++..     .+-    .++|.++|+.++
T Consensus       448 ~p~~~~l~v~~~-----~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          448 HPNSQYLYVDAT-----LNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTTCSEEEEECT-----TCSSHHHHTCEEEEEGGGC
T ss_pred             CCCCCeEEEecC-----CCCCcccCceEEEEECCcc
Confidence            999999987642     111    369999999854

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.64  E-value=7.4e-14  Score=130.79  Aligned_cols=252  Identities=10%  Similarity=-0.038  Sum_probs=157.7

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCC-----CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDS-----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      |...+..++|+| ++++||.+..+     .+|++||+++++            .... ..+.. .+..++|+|| +.|+.
T Consensus       161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~------------~~~~-~~~~~-~~~~~~wspD-~~l~~  224 (741)
T 1yr2_A          161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGK------------PLAD-ELKWV-KFSGLAWLGN-DALLY  224 (741)
T ss_dssp             --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCC------------EEEE-EEEEE-ESCCCEESTT-SEEEE
T ss_pred             CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCC------------CCCc-cCCCc-eeccEEEECC-CEEEE
Confidence            444788999999 88888776543     369999999983            2221 11111 1247899999 98888


Q ss_pred             ecCCCe--------------EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547          105 GGKDKS--------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus       105 ~~~d~~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      ++.|+.              |.+|++.++....                                    ..+.....+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~------------------------------------~lv~~~~~~~~  268 (741)
T 1yr2_A          225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD------------------------------------QPVFATPELPK  268 (741)
T ss_dssp             EECCCC--------CCCCCEEEEEETTSCGGGC------------------------------------EEEECCTTCTT
T ss_pred             EEecCcccccccccCCCCCEEEEEECCCCchhC------------------------------------EEEeccCCCCe
Confidence            776554              7788876432100                                    00111122334


Q ss_pred             CeEEEEEccCCCeeEEEecC-----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC----CeEEE
Q 016547          171 TVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRM  241 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~  241 (387)
                      .+..+.|+|+| ++++..+.     ...|.+||+.++.......+..+...+.... +| +++.|+..+.+    +.|.+
T Consensus       269 ~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~  345 (741)
T 1yr2_A          269 RGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVR  345 (741)
T ss_dssp             CEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEE
T ss_pred             EEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEE
Confidence            58899999999 55555443     3489999998762111233334444444443 47 78878777764    45999


Q ss_pred             EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-C
Q 016547          242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-H  320 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  320 (387)
                      ||+.+..    ......+..+...+..++++  +..++++...|+..+||.+...+.              ....+.. +
T Consensus       346 ~d~~~~~----~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~--------------~~~~l~~~~  405 (741)
T 1yr2_A          346 VDLSGST----PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK--------------PAGAVSLPG  405 (741)
T ss_dssp             EECSSSS----CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC--------------EEEECBCSS
T ss_pred             EeCCCCc----cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC--------------ceeeccCCC
Confidence            9987510    01223334455567778877  445778888899888886653221              1222232 3


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ...+..+.++|+++.++++.+    +....++|++||+..
T Consensus       406 ~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          406 IGSASGLSGRPGDRHAYLSFS----SFTQPATVLALDPAT  441 (741)
T ss_dssp             SCEEEEEECCBTCSCEEEEEE----ETTEEEEEEEEETTT
T ss_pred             CeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence            567889999999988887765    456678999999873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.64  E-value=8.7e-14  Score=117.58  Aligned_cols=181  Identities=12%  Similarity=0.070  Sum_probs=129.9

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      +++.+++++ ...++++|+.++ +++|+++......... .....+.... .+..  |+.++|  ++++|+++ .++.|+
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~-~~~~~~~~~~-~lp~--V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSD-STPLTFKWEK-EIPD--VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSS-SCCCCCSEEE-ECTT--EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccc-cccccceEEe-eCCC--eeEEEE--CCCEEEEE-cCCcEE
Confidence            589999999 777888888885 6679977553111000 0001222223 3554  899999  99999999 789999


Q ss_pred             EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      +||+.+....                                        .....|...+.++.+.+.  + +++++.||
T Consensus       110 v~dv~sl~~~----------------------------------------~~~~~~~~~v~~i~~~~p--~-~av~~~dG  146 (388)
T 1xip_A          110 SLDLEELSEF----------------------------------------RTVTSFEKPVFQLKNVNN--T-LVILNSVN  146 (388)
T ss_dssp             EEESSSTTCE----------------------------------------EEEEECSSCEEEEEECSS--E-EEEEETTS
T ss_pred             EEEchhhhcc----------------------------------------CccceeecceeeEEecCC--C-EEEEECCC
Confidence            9999754211                                        223445566888877654  3 88889999


Q ss_pred             eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc--eEEe------c---c
Q 016547          193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKF------E---G  261 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~------~---~  261 (387)
                      .|.+||+..+.  ...    +...|++++|+| +|  ++.|..||.+++|+...      ...  ..++      .   +
T Consensus       147 ~L~v~dl~~~~--~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~------~~~~~k~~I~~Pp~~~~~~~  211 (388)
T 1xip_A          147 DLSALDLRTKS--TKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRN------GEMEKQFEFSLPSELEELPV  211 (388)
T ss_dssp             EEEEEETTTCC--EEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEET------TEEEEEEEECCCHHHHTSCT
T ss_pred             CEEEEEccCCc--ccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCC------ccccccceecCCcccccccC
Confidence            99999999776  222    345899999999 77  78899999999998876      443  4455      2   3


Q ss_pred             ccceEEEEEEcCCCCeeEE
Q 016547          262 HSAAVLCVQWSPDKSSVFG  280 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~  280 (387)
                      |...|.++.|.+++.++++
T Consensus       212 ~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          212 EEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSEEEEEEESSSSEEEEE
T ss_pred             CCeeEEEEEEecCCeEEEE
Confidence            7789999999999986543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=6.8e-12  Score=104.18  Aligned_cols=241  Identities=9%  Similarity=-0.027  Sum_probs=161.9

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEecC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK  107 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~~  107 (387)
                      .....+.++++.+ ++++.++...++.|.+||.. ++            ... .+..+.. .+..+++.++++..++...
T Consensus        17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~------------~~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~   81 (300)
T 2qc5_A           17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GR------------IKEFEVPTPDA-KVMCLIVSSLGDIWFTENG   81 (300)
T ss_dssp             STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC------------EEEEECSSTTC-CEEEEEECTTSCEEEEETT
T ss_pred             CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-Cc------------eEEEECCCCCC-cceeEEECCCCCEEEEecC
Confidence            3456789999988 78888887778999999987 41            111 1122222 4789999999998887777


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      ++.|..+|.. +....                                       .........+.++++.+++ .++++
T Consensus        82 ~~~v~~~d~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~  120 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFTE---------------------------------------YPLPQPDSGPYGITEGLNG-DIWFT  120 (300)
T ss_dssp             TTEEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECSTT-CEEEE
T ss_pred             CCeEEEECCC-CCeEE---------------------------------------ecCCCCCCCCccceECCCC-CEEEE
Confidence            8899999876 22110                                       1111123568899999988 77777


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAV  266 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i  266 (387)
                      ...++.|..+|.. ++. ...........+..+++++ +++++++...++.|..+|. +      ++... ........+
T Consensus       121 ~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~  190 (300)
T 2qc5_A          121 QLNGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-T------GKLEEYPLPTNAAAP  190 (300)
T ss_dssp             ETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCE
T ss_pred             ccCCCeEEEECCC-CCE-EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-C------CcEEEeeCCCCCCCc
Confidence            7778899999987 441 1122233456789999999 8887776666788999987 3      33322 222334568


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  346 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~t  346 (387)
                      .++++.+++. ++++....+.|.+||... ...              ......+...+.++++++++..++ +.      
T Consensus       191 ~~i~~d~~g~-l~v~~~~~~~i~~~~~~g-~~~--------------~~~~~~~~~~~~~i~~d~~g~l~v-~~------  247 (300)
T 2qc5_A          191 VGITSGNDGA-LWFVEIMGNKIGRITTTG-EIS--------------EYDIPTPNARPHAITAGKNSEIWF-TE------  247 (300)
T ss_dssp             EEEEECTTSS-EEEEETTTTEEEEECTTC-CEE--------------EEECSSTTCCEEEEEECSTTCEEE-EE------
T ss_pred             ceEEECCCCC-EEEEccCCCEEEEEcCCC-cEE--------------EEECCCCCCCceEEEECCCCCEEE-ec------
Confidence            8999999987 566666678899999832 111              111223445788999999987444 32      


Q ss_pred             CCCCceEEEEecC
Q 016547          347 TGGGGTLQIWRMS  359 (387)
Q Consensus       347 g~~dg~i~iw~~~  359 (387)
                       ..++.|..|+..
T Consensus       248 -~~~~~i~~~~~~  259 (300)
T 2qc5_A          248 -WGANQIGRITND  259 (300)
T ss_dssp             -TTTTEEEEECTT
T ss_pred             -cCCCeEEEECCC
Confidence             234788888875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=1.8e-11  Score=101.50  Aligned_cols=238  Identities=6%  Similarity=-0.006  Sum_probs=160.2

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      +...+.++++.+ ++.++++...++.|..||.+..            .....+.... ..+..+++.++|+.+++...++
T Consensus        55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~------------~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~  120 (299)
T 2z2n_A           55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGI------------IKEYTLPNPD-SAPYGITEGPNGDIWFTEMNGN  120 (299)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSC------------EEEEECSSTT-CCEEEEEECTTSCEEEEETTTT
T ss_pred             ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCc------------EEEEeCCCcC-CCceeeEECCCCCEEEEecCCc
Confidence            457799999988 7788888777888999997622            1011111122 2578999999998888877788


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|..||. ++....                                       .........+.++++.+++ .++++..
T Consensus       121 ~i~~~d~-~g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~  159 (299)
T 2z2n_A          121 RIGRITD-DGKIRE---------------------------------------YELPNKGSYPSFITLGSDN-ALWFTEN  159 (299)
T ss_dssp             EEEEECT-TCCEEE---------------------------------------EECSSTTCCEEEEEECTTS-CEEEEET
T ss_pred             eEEEECC-CCCEEE---------------------------------------ecCCCCCCCCceEEEcCCC-CEEEEeC
Confidence            9999987 321110                                       0111223468899999998 7777777


Q ss_pred             CCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEE
Q 016547          190 DDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVL  267 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~  267 (387)
                      .++.|..||. +++  .... .......+..+++++ +++++++...++.|..||. +      +.... ....+...+.
T Consensus       160 ~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~  228 (299)
T 2z2n_A          160 QNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNARPH  228 (299)
T ss_dssp             TTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEE
T ss_pred             CCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCCce
Confidence            7889999998 555  2221 233455688999999 8887777667889999998 4      44322 2233446789


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      +++++++|. ++++...++.|..||...  ..             .......+...+.++++ +++..+++ .       
T Consensus       229 ~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~~-------------~~~~~~~~~~~~~~i~~-~~g~l~v~-~-------  283 (299)
T 2z2n_A          229 AITAGAGID-LWFTEWGANKIGRLTSNN--II-------------EEYPIQIKSAEPHGICF-DGETIWFA-M-------  283 (299)
T ss_dssp             EEEECSTTC-EEEEETTTTEEEEEETTT--EE-------------EEEECSSSSCCEEEEEE-CSSCEEEE-E-------
T ss_pred             eEEECCCCC-EEEeccCCceEEEECCCC--ce-------------EEEeCCCCCCccceEEe-cCCCEEEE-e-------
Confidence            999999998 566666788999999832  11             11112344567899999 87765552 2       


Q ss_pred             CCCceEEEEecC
Q 016547          348 GGGGTLQIWRMS  359 (387)
Q Consensus       348 ~~dg~i~iw~~~  359 (387)
                      . .+.|..++..
T Consensus       284 ~-~~~l~~~~~~  294 (299)
T 2z2n_A          284 E-CDKIGKLTLI  294 (299)
T ss_dssp             T-TTEEEEEEEC
T ss_pred             c-CCcEEEEEcC
Confidence            2 2567777766

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=3e-12  Score=110.79  Aligned_cols=254  Identities=13%  Similarity=0.109  Sum_probs=155.5

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC--
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--  109 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--  109 (387)
                      .....|++.+ +++++++...++.|++||.+++            ..........  ... ++|+++++.|+++..++  
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g------------~~~~~~~~~~--~~~-ia~~~~g~~l~~~d~~~~~  194 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDN------------KVTTVHPGFK--GGK-PAVTKDKQRVYSIGWEGTH  194 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTT------------EEEEEEETCC--BCB-CEECTTSSEEEEEBSSTTC
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCC------------EEEEeeccCC--CCc-eeEecCCCcEEEEecCCCc
Confidence            4678999998 8888888888899999999877            3333333322  233 99999999998888766  


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEccCCCeeEEEe
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      .|.+++.........                                     +..+ ......+.+++++|+++.+++ +
T Consensus       195 ~I~~~d~~~~~~~~~-------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv-~  236 (409)
T 3hrp_A          195 TVYVYMKASGWAPTR-------------------------------------IGQLGSTFSGKIGAVALDETEEWLYF-V  236 (409)
T ss_dssp             EEEEEEGGGTTCEEE-------------------------------------EEECCTTSCSCCCBCEECTTSSEEEE-E
T ss_pred             eEEEEEcCCCceeEE-------------------------------------eeeccchhcCCcEEEEEeCCCCeEEE-E
Confidence            788888754321000                                     0000 113355788999995435555 6


Q ss_pred             cCCCeEEEEEccCCCCceeEE--eeccCCCe-e-EEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-
Q 016547          189 GDDSCLILWDARVGTSPVIKV--EKAHDADL-H-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-  263 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~i-~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-  263 (387)
                      ..++.|+.||...+.......  ..++...- . .++|+|.++.++++-..++.|+.|+...       . +..+.++. 
T Consensus       237 d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~  308 (409)
T 3hrp_A          237 DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSAT  308 (409)
T ss_dssp             CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTT
T ss_pred             ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCC
Confidence            678899999998766211100  11222222 3 9999994466666666788999998763       2 22222221 


Q ss_pred             --------------ceEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCC-CCCCCCceeeeeeccCCCCeeEE
Q 016547          264 --------------AAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGP-RTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       264 --------------~~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                                    .....++++|+|. |+++-. .++.|+.|++..+........ ........  ......-.....+
T Consensus       309 ~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g--~~~~~~~~~P~gi  385 (409)
T 3hrp_A          309 QKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDG--TPLEATFNYPYDI  385 (409)
T ss_dssp             CCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCB--STTTCCBSSEEEE
T ss_pred             CCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCC--ChhceEeCCceEE
Confidence                          3478999999998 677887 899999999765321100000 00000000  0000112467899


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      ++++++. |+++-       ..++.|+.+++
T Consensus       386 avd~~g~-lyVad-------~~n~~Ir~i~~  408 (409)
T 3hrp_A          386 CYDGEGG-YWIAE-------AWGKAIRKYAV  408 (409)
T ss_dssp             EECSSSE-EEEEE-------STTCEEEEEEE
T ss_pred             EEcCCCC-EEEEE-------CCCCeEEEEEe
Confidence            9999964 55533       34478888765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=4.5e-12  Score=105.09  Aligned_cols=232  Identities=13%  Similarity=0.065  Sum_probs=152.0

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  111 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i  111 (387)
                      .--.+..|++.++.++++...++.|..||..+++            . ..+. ... .+.+++++++|+++++.  ++.|
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~~~~i~~~~dG~l~v~~--~~~l   75 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------V-QRVT-MDA-PVSSVALRQSGGYVATI--GTKF   75 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC------------E-EEEE-CSS-CEEEEEEBTTSSEEEEE--TTEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCc------------E-EEEe-CCC-ceEEEEECCCCCEEEEE--CCeE
Confidence            3456888999778888888889999999998762            2 2222 222 57899999999955543  5689


Q ss_pred             EEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec--CCCCCeEEEEEccCCCeeEEEec
Q 016547          112 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       112 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .+||.+++.....                                      ....  .....+..+++.|+| +++++..
T Consensus        76 ~~~d~~~g~~~~~--------------------------------------~~~~~~~~~~~~~di~~d~dG-~l~~~~~  116 (297)
T 3g4e_A           76 CALNWKEQSAVVL--------------------------------------ATVDNDKKNNRFNDGKVDPAG-RYFAGTM  116 (297)
T ss_dssp             EEEETTTTEEEEE--------------------------------------EECCTTCSSEEEEEEEECTTS-CEEEEEE
T ss_pred             EEEECCCCcEEEE--------------------------------------EecCCCCCCCCCCCEEECCCC-CEEEecC
Confidence            9999875432110                                      0000  112357889999998 5555432


Q ss_pred             C---------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCC-----
Q 016547          190 D---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-----  254 (387)
Q Consensus       190 ~---------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~-----  254 (387)
                      .         ...-.+|.+.....  ...........+.++|+| +++.| ++.+.++.|..||+....    +.     
T Consensus       117 ~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~----G~~~~~~  189 (297)
T 3g4e_A          117 AEETAPAVLERHQGALYSLFPDHH--VKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQT----GQISNRR  189 (297)
T ss_dssp             ECCSBTTBCCTTCEEEEEECTTSC--EEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTT----CCEEEEE
T ss_pred             CcccccccccCCCcEEEEEECCCC--EEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCC----CcccCcE
Confidence            1         12334554443221  222233445678999999 88755 555567899999984211    32     


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASD  333 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  333 (387)
                      .+..+..+...+..+++.++|. |.++...++.|.+||..++               +++..+..+...+++++|. |++
T Consensus       190 ~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---------------~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          190 SVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---------------KRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             EEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---------------CEEEEEECSSSBEEEEEEESGGG
T ss_pred             EEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---------------eEEEEEECCCCCceEEEEeCCCC
Confidence            2223333456788999999997 5667767888999998764               2344445555689999998 898


Q ss_pred             CeEEEEecC
Q 016547          334 PWTVVSVSD  342 (387)
Q Consensus       334 ~~l~~s~s~  342 (387)
                      +.|+++...
T Consensus       254 ~~L~vt~~~  262 (297)
T 3g4e_A          254 SEMYVTCAR  262 (297)
T ss_dssp             CEEEEEEBC
T ss_pred             CEEEEEcCC
Confidence            988887764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.59  E-value=4e-13  Score=114.54  Aligned_cols=227  Identities=9%  Similarity=0.087  Sum_probs=145.2

Q ss_pred             CcEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEE-EeccCCCceEEEEECCCC-CEEEEecC
Q 016547           32 GEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTE-PYVLSGGK  107 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~v~~~~~~~~~-~~l~s~~~  107 (387)
                      .....++++| ++++|+++..  +++|.+||+.+.            +.+.. +. ...  ...+.+.|++ ..+++.+.
T Consensus       108 ~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~------------~~~~~~i~-~~~--~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A          108 NYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKG------------DYVEDVTA-AAG--CWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTT------------EEEEEEGG-GTT--EEEEEECTTSSSEEEEEET
T ss_pred             CCcceEEECC-CCCEEEEECCCCCCeEEEEECCCC------------cEEEEEec-CCC--cceeEEcCCCCeeEEEECC
Confidence            4567899999 7888877753  689999999988            34433 22 222  2335677765 56778888


Q ss_pred             CCeEEEEEcCCCcCcc-ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          108 DKSVVLWSIQDHITSS-ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      ||++.+|++....... ....                                  ...+.....++ .+.+++++ ..++
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~----------------------------------~~~~~~~~~~~-~~~~~~~g-~~~~  215 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRS----------------------------------KQMFSVKDDPI-FIAPALDK-DKAH  215 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEEC----------------------------------CCCSCTTTSCB-CSCCEECS-SEEE
T ss_pred             CCcEEEEEECCCCcEeeeccc----------------------------------cceEcCCCCce-EEEecccC-CEEE
Confidence            9999999986421110 0000                                  00011111111 22335666 4455


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeec------c----CCCeeEEEecCCCCCeEEEeeC-----------CCeEEEEEec
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKA------H----DADLHCVDWNPLDDNLILTGSA-----------DNSVRMFDRR  245 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~i~~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~  245 (387)
                      ..+.++.|.++|+..........+..      +    ......++++| +++.++++..           .+.|.+||+.
T Consensus       216 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~  294 (361)
T 2oiz_A          216 FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK  294 (361)
T ss_dssp             EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred             EEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence            56678999999987654222222110      0    11222378999 7776666543           3589999999


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      +      .+.+.++..+.  +.+++|+|+|++|+ +++. +.|.+||..+...             +.+..+..+.....
T Consensus       295 t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~~l-------------~~~~~i~~~G~~P~  351 (361)
T 2oiz_A          295 T------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQPEP-------------KLLRTIEGAAEASL  351 (361)
T ss_dssp             T------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSSSC-------------EEEEEETTSCSSEE
T ss_pred             C------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCCcc-------------eeeEEeccCCCCcE
Confidence            8      88899888776  89999999999765 4554 9999999987411             23444455667788


Q ss_pred             EEEEccCCC
Q 016547          326 DFHWNASDP  334 (387)
Q Consensus       326 ~~~~~~~~~  334 (387)
                      .++++|+|.
T Consensus       352 ~~~~~p~G~  360 (361)
T 2oiz_A          352 QVQFHPVGG  360 (361)
T ss_dssp             EEEECCCSC
T ss_pred             EEEecCCCC
Confidence            999999885

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=7.5e-13  Score=108.26  Aligned_cols=217  Identities=6%  Similarity=-0.089  Sum_probs=139.0

Q ss_pred             eEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           90 EFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        90 v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ..+++++++|+.++ +...++.|.+|+..+....                                        .....+
T Consensus        26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~----------------------------------------~~~~~~   65 (270)
T 1rwi_B           26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT----------------------------------------VLPFNG   65 (270)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECC-----E----------------------------------------ECCCCS
T ss_pred             ccceEECCCCCEEEEccCCCCcEEEecCCCcccc----------------------------------------eEeeCC
Confidence            46999999999777 5577899999987543211                                        000112


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      ...+.++++.+++ +++++.. ++.|.+||......  ..........+..+++++ +++++++...++.|.+|+..+  
T Consensus        66 ~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~--~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~--  138 (270)
T 1rwi_B           66 LYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQ--TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS--  138 (270)
T ss_dssp             CCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCC--EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC--
T ss_pred             cCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceE--eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC--
Confidence            2456789999988 6666665 88999999876542  211112335789999999 888888777789999997554  


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                          .............+.+++++++++ ++++...++.|.+||.......               .....+...+.+++
T Consensus       139 ----~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p~~i~  198 (270)
T 1rwi_B          139 ----KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQV---------------VLPFTDITAPWGIA  198 (270)
T ss_dssp             ----CSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEE---------------ECCCSSCCSEEEEE
T ss_pred             ----ceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceE---------------eecccCCCCceEEE
Confidence                322222222223567899999998 6767777889999998763211               11122335688999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++++|. +.++.       ..++.|.+|+...      .........+...+.++++.|
T Consensus       199 ~d~~g~-l~v~~-------~~~~~v~~~~~~~------~~~~~~~~~~~~~p~~i~~~~  243 (270)
T 1rwi_B          199 VDEAGT-VYVTE-------HNTNQVVKLLAGS------TTSTVLPFTGLNTPLAVAVDS  243 (270)
T ss_dssp             ECTTCC-EEEEE-------TTTSCEEEECTTC------SCCEECCCCSCSCEEEEEECT
T ss_pred             ECCCCC-EEEEE-------CCCCcEEEEcCCC------CcceeeccCCCCCceeEEECC
Confidence            999984 55433       3348999999873      221111122234567777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.58  E-value=2.2e-13  Score=115.19  Aligned_cols=194  Identities=10%  Similarity=0.054  Sum_probs=131.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .++.+++++...++++|+.+ .+.+|++++.........                             ...++... ..+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----------------------------~~~~~~~~-~~l   87 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----------------------------TPLTFKWE-KEI   87 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----------------------------CCCCCSEE-EEC
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----------------------------ccccceEE-eeC
Confidence            47899999999999999987 556699875431111000                             00111122 234


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      .. |+.++|  ++ ..|+++ .++.|++||+++..  .......|...+.++.+.+ .  .+++++.||.|.+||+..  
T Consensus        88 p~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~--  155 (388)
T 1xip_A           88 PD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT--  155 (388)
T ss_dssp             TT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT--
T ss_pred             CC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC--
Confidence            55 999999  66 677777 88999999998876  3445566777888887765 3  288899999999999997  


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc--eeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK--KVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                          +....    +...|++++|+|+|   ++.|..||.+++|+......  .....     .|+. +....+|...|.+
T Consensus       156 ----~~~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~-----~Pp~-~~~~~~~~~~V~s  218 (388)
T 1xip_A          156 ----KSTKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFS-----LPSE-LEELPVEEYSPLS  218 (388)
T ss_dssp             ----CCEEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEEC-----CCHH-HHTSCTTTSEEEE
T ss_pred             ----Ccccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceec-----CCcc-cccccCCCeeEEE
Confidence                44432    45689999999999   34677899999998876421  10000     0000 0001147789999


Q ss_pred             EEEccCCCeEEEEecC
Q 016547          327 FHWNASDPWTVVSVSD  342 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~  342 (387)
                      +.|.+++.++++-...
T Consensus       219 I~wl~~~~flv~y~~~  234 (388)
T 1xip_A          219 VTILSPQDFLAVFGNV  234 (388)
T ss_dssp             EEESSSSEEEEEEECC
T ss_pred             EEEecCCeEEEEEcCC
Confidence            9999988877654443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=4e-14  Score=122.67  Aligned_cols=200  Identities=11%  Similarity=0.036  Sum_probs=125.7

Q ss_pred             eEEEEECCCCCEEEEecCC---CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547           90 EFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  166 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (387)
                      +..++|+|||++|+....+   ..|.+||+.++...                                        ....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------------------~l~~   77 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------------------QLTE   77 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------------------ECCC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------------------Eeec
Confidence            5678999999998776432   46888887654221                                        1111


Q ss_pred             CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeE-------------------EEecCCCC
Q 016547          167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC-------------------VDWNPLDD  227 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~  227 (387)
                      .+......+.|+|++ +.|+.++.++.|++||+.+++.  ......+......                   +.|+| ++
T Consensus        78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg  153 (396)
T 3c5m_A           78 GKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEE--QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LT  153 (396)
T ss_dssp             SSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCE--EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CC
T ss_pred             CCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCc--EEEEecccccCCCCCEEEeccCCccccccccccccCC-CC
Confidence            122222347899999 7787888888999999988762  2233223322222                   34567 66


Q ss_pred             CeEEEe-----eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC-CCCeeEEEecC-C----CeEEEEeCCCC
Q 016547          228 NLILTG-----SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAE-D----GLLNIWDYEKV  296 (387)
Q Consensus       228 ~~l~~~-----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ll~s~~~-d----~~i~vwd~~~~  296 (387)
                      +.++..     ..+..|.+||+.+      ++..... .+...+..+.|+| +++.++.+... .    ..|.+||+...
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~------g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          154 SWEKFAEFYHTNPTCRLIKVDIET------GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             SHHHHHHHHHTCCCEEEEEEETTT------CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             cceeeeeeccCCCcceEEEEECCC------CcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence            666554     3567899999886      5443333 4667789999999 77755433321 1    46888887653


Q ss_pred             CceeccCCCCCCCCceeeeeeccC--CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          297 GKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..                ..+..+  ...+..++|+|++++++++...   .+..++.|++||+.
T Consensus       227 ~~----------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          227 NV----------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYF---KGQTDRVIYKANPE  272 (396)
T ss_dssp             CC----------------EESSCCCTTEEEEEEEECTTSSCEEEEEEE---TTTCCEEEEEECTT
T ss_pred             ce----------------eEeeccCCCccccceEECCCCCEEEEEecC---CCCccceEEEEECC
Confidence            21                111122  2357889999999987765433   23344669999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.56  E-value=2.9e-12  Score=106.27  Aligned_cols=223  Identities=10%  Similarity=0.085  Sum_probs=145.4

Q ss_pred             ceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           89 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        89 ~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      .-.+..|++++. .+++...++.|..||..++..                                         ..+ .
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~-~   51 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------------------QRV-T   51 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------------------EEE-E
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEE-e
Confidence            346889999654 556666789999999875321                                         111 1


Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCC---------
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD---------  236 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d---------  236 (387)
                      ....+.++++.+++ +++++ . +..|.+||..+++...+.....  ....++.++++| +++++++...+         
T Consensus        52 ~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           52 MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCT
T ss_pred             CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccC
Confidence            24578999999998 54444 3 5689999988766221211111  123478899999 88876654332         


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC-CCCceeccCCCCCCCCceeee
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      ..-.+|.+...     ++ +..+...-...+.++|+|+++.++++.+.++.|.+||+. ..+...         ....+.
T Consensus       128 ~~~~l~~~d~~-----g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~  192 (297)
T 3g4e_A          128 HQGALYSLFPD-----HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVY  192 (297)
T ss_dssp             TCEEEEEECTT-----SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEE
T ss_pred             CCcEEEEEECC-----CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEE
Confidence            23456655531     22 222333334568999999999888888888999999984 212110         012233


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      .+..+...+..+++.++|...+ +..       .++.|..||..      +++.+..+..+...+++++|.
T Consensus       193 ~~~~~~~~p~g~~~d~~G~lwv-a~~-------~~~~v~~~d~~------tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          193 KLEKEEQIPDGMCIDAEGKLWV-ACY-------NGGRVIRLDPV------TGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             ECCGGGCEEEEEEEBTTSCEEE-EEE-------TTTEEEEECTT------TCCEEEEEECSSSBEEEEEEE
T ss_pred             ECCCCCCCCCeeEECCCCCEEE-EEc-------CCCEEEEEcCC------CceEEEEEECCCCCceEEEEe
Confidence            3344456778999999986544 332       23789999988      688888888777789999996

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=3.9e-11  Score=102.31  Aligned_cols=243  Identities=10%  Similarity=-0.011  Sum_probs=151.0

Q ss_pred             EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-------CCCceEEEEECCC
Q 016547           36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-------QDNAEFALAMCPT   98 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~~v~~~~~~~~   98 (387)
                      .++++| +++.|..+.          .++.|.+||..+.+            .+..+...       .. .-..+.|+||
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~------------~~~~i~~~~~~~~~~g~-~p~~~~~spD  135 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL------------PIADIELPDAPRFDVGP-YSWMNANTPN  135 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCc------------EEEEEECCCccccccCC-CccceEECCC
Confidence            899999 777777764          36789999998773            22222211       01 1248999999


Q ss_pred             CCEEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           99 EPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        99 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      |++|+++..  +++|.++| .+++....                                       .+.. .   .++.
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~~~---------------------------------------~i~~-~---~~~~  171 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSDDQ---------------------------------------LLSS-P---TCYH  171 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEEeE---------------------------------------EcCC-C---ceEE
Confidence            999998764  57899999 76533211                                       0111 1   1245


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEee-----ccCCC-eeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      +.|+++..+++.+.||.+.++|. +++.  .....     ....+ .....+.+ ++..++..+..+.+.+.|+....  
T Consensus       172 ~~~~~~~~~~~~~~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~--  245 (373)
T 2mad_H          172 IHPGAPSTFYLLCAQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAG--  245 (373)
T ss_pred             EEeCCCceEEEEcCCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCc--
Confidence            56776667788889999999999 6652  21111     11112 12345666 44444444578899999987521  


Q ss_pred             CCCCceEEecc----------ccceEEEEEEcCCCCeeEEEec---------CCCeEEEEeCCCCCceeccCCCCCCCCc
Q 016547          251 GVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPA  311 (387)
Q Consensus       251 ~~~~~~~~~~~----------~~~~i~~~~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~  311 (387)
                        ...+..+..          .......++++|+++.++++..         .++.|.++|+.+.               
T Consensus       246 --~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------------  308 (373)
T 2mad_H          246 --ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------------  308 (373)
T ss_pred             --ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------------
Confidence              112222211          1122445789999998776553         2357999999875               


Q ss_pred             eeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhh
Q 016547          312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE  372 (387)
Q Consensus       312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~  372 (387)
                      +.+..+. -......++|+||++++++++.      ..++.|.+||+.      +++.+.+
T Consensus       309 ~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~------~~~~~V~ViD~~------t~~vv~~  356 (373)
T 2mad_H          309 QTSSQIS-LGHDVDAISVAQDGGPDLYALS------AGTEVLHIYDAG------AGDQDQS  356 (373)
T ss_pred             EEEEEEE-CCCCcCeEEECCCCCeEEEEEc------CCCCeEEEEECC------CCCEEee
Confidence            2333332 2235789999999995444332      235999999999      6777766

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=2.3e-10  Score=94.93  Aligned_cols=227  Identities=6%  Similarity=-0.050  Sum_probs=151.9

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      +...+.++++.+ +++++++...++.|..||.. ++.           ....+.... ..+..+++.++|+++++...++
T Consensus        60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~-----------~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~  125 (300)
T 2qc5_A           60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF-----------TEYPLPQPD-SGPYGITEGLNGDIWFTQLNGD  125 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-----------EEEECSSTT-CCEEEEEECSTTCEEEEETTTT
T ss_pred             CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe-----------EEecCCCCC-CCCccceECCCCCEEEEccCCC
Confidence            446789999988 77888777778889999987 411           111111122 2478999999999888877788


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|..+|.. +....                                       ..+......+.++++.+++ +++++..
T Consensus       126 ~i~~~~~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~  164 (300)
T 2qc5_A          126 RIGKLTAD-GTIYE---------------------------------------YDLPNKGSYPAFITLGSDN-ALWFTEN  164 (300)
T ss_dssp             EEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred             eEEEECCC-CCEEE---------------------------------------ccCCCCCCCceeEEECCCC-CEEEEec
Confidence            99999875 21110                                       0111223467899999998 6777777


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE-eccccceEEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLC  268 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~  268 (387)
                      .++.|..+|. +++. ...........+..+++++ +++++++....+.|..||..       +..... +......+.+
T Consensus       165 ~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~  234 (300)
T 2qc5_A          165 QNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHA  234 (300)
T ss_dssp             TTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEE
T ss_pred             CCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceE
Confidence            7889999998 4441 1122223445788999999 88877776667889999873       333222 2334566889


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                      +++.++|. ++++...++.|..||...  ..             ...........+.++++.++|..++
T Consensus       235 i~~d~~g~-l~v~~~~~~~i~~~~~~g--~~-------------~~~~~~~~~~~~~~i~~~~~g~l~v  287 (300)
T 2qc5_A          235 ITAGKNSE-IWFTEWGANQIGRITNDN--TI-------------QEYQLQTENAEPHGITFGKDGSVWF  287 (300)
T ss_dssp             EEECSTTC-EEEEETTTTEEEEECTTS--CE-------------EEEECCSTTCCCCCEEECTTSCEEE
T ss_pred             EEECCCCC-EEEeccCCCeEEEECCCC--cE-------------EEEECCccCCccceeEeCCCCCEEE
Confidence            99999998 666666678999999842  11             0111222345688999999987555

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.53  E-value=2.8e-12  Score=119.03  Aligned_cols=246  Identities=14%  Similarity=0.095  Sum_probs=155.0

Q ss_pred             CCCcEEEEEecCCCCcEEEE-----ecCCCcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEE
Q 016547           30 HPGEVNRIRELPQNTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      |...+..++|+| ++++||-     |+...+|++||+++++            .+. .+....   ...++|+ ||+.|+
T Consensus       127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~------------~~~~~~~~~k---~~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQ------------PLETPLKDVK---FSGISWL-GNEGFF  189 (693)
T ss_dssp             SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCS------------EEEEEEEEEE---SCCCEEE-TTTEEE
T ss_pred             CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCC------------CCccccCCce---eccEEEe-CCCEEE
Confidence            556788999999 8887773     3334679999999983            222 122111   2477899 999998


Q ss_pred             EecCCC-------------eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CC
Q 016547          104 SGGKDK-------------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HE  169 (387)
Q Consensus       104 s~~~d~-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  169 (387)
                      .++.+.             .|.+|++.+.....                                    ..+..... |.
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~------------------------------------~~v~~~~~~~~  233 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDD------------------------------------RLVFGAIPAQH  233 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCGGGC------------------------------------EEEESCSGGGC
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCcccc------------------------------------eEEEecCCCCC
Confidence            887764             38888886542110                                    01111122 44


Q ss_pred             CCeEEEEEccCCCeeEEEec---CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCC---CeEEEE
Q 016547          170 DTVEDVTFCPSSAQEFCSVG---DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSAD---NSVRMF  242 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d---g~i~~~  242 (387)
                      ..+..+.|+|++..++++.+   .+..|.++|+.++... ...+..+....... +++ ++..| +....+   +.|..+
T Consensus       234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~~~~l~~~  310 (693)
T 3iuj_A          234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-LLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAPNRRLVTV  310 (693)
T ss_dssp             CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-CEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred             eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-eEEEeCCCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEE
Confidence            55788999999955555543   2358999999876422 33444455555554 555 44444 444443   578888


Q ss_pred             EeccCCCCCCCCc--eEEeccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeee-
Q 016547          243 DRRNLTSNGVGSP--INKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-  317 (387)
Q Consensus       243 d~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-  317 (387)
                      |+.+      +..  ...+..|...+.  .|++++++|+++...++  .|++||+... .               ...+ 
T Consensus       311 d~~~------~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~---------------~~~l~  366 (693)
T 3iuj_A          311 DAAN------PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-R---------------VREVA  366 (693)
T ss_dssp             ETTS------CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-E---------------EEEEC
T ss_pred             eCCC------CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-e---------------eEEee
Confidence            8876      332  345555655554  88999998776666666  5888888742 1               1111 


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....+.+..+.++++++.++++.+.    -..-++|..||+.
T Consensus       367 ~p~~~~~~~~~~~~d~~~l~~~~ss----~~tP~~l~~~d~~  404 (693)
T 3iuj_A          367 LPGLGSVSGFNGKHDDPALYFGFEN----YAQPPTLYRFEPK  404 (693)
T ss_dssp             CSSSSEEEECCCCTTCSCEEEEEEC----SSSCCEEEEECTT
T ss_pred             cCCCceEEeeecCCCCCEEEEEecC----CCCCCEEEEEECC
Confidence            1234467788888999888877653    2344789999986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=3.9e-12  Score=107.01  Aligned_cols=243  Identities=9%  Similarity=0.008  Sum_probs=153.6

Q ss_pred             CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547           52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      .+++|.++|.++++....+.......       .-+.....+.+. +++..++...++.|.+||..+++..         
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~-------~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---------   77 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGF-------KLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---------   77 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSS-------CCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE---------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCc-------ccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE---------
Confidence            48899999999884322211000000       011134567774 3445556666899999999865332         


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  211 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  211 (387)
                                                     ..+. .......+++++++ .++++...++.|.+||..+.+  ....+.
T Consensus        78 -------------------------------~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~--~~~~i~  122 (328)
T 3dsm_A           78 -------------------------------GRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE--ITGYIE  122 (328)
T ss_dssp             -------------------------------EEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE--EEEEEE
T ss_pred             -------------------------------EEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe--EEEEEE
Confidence                                           2222 23567889999988 766666589999999998876  333333


Q ss_pred             ccC-----CCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC
Q 016547          212 AHD-----ADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  285 (387)
Q Consensus       212 ~~~-----~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d  285 (387)
                      ...     .....+++ . ++.++++.. .++.|.++|..+      ++.+..+.. ......++++|+|+ +++++..+
T Consensus       123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t------~~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~  192 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTET------DKVVDELTI-GIQPTSLVMDKYNK-MWTITDGG  192 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTT------TEEEEEEEC-SSCBCCCEECTTSE-EEEEBCCB
T ss_pred             cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCC------CeEEEEEEc-CCCccceEEcCCCC-EEEEECCC
Confidence            222     15667777 4 555555544 489999999998      676666654 33456899999998 45565544


Q ss_pred             ----------CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC-CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEE
Q 016547          286 ----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  354 (387)
Q Consensus       286 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~  354 (387)
                                +.|.++|..+..               ....+... ......++|+|++++++++.          +.|.
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~---------------v~~~~~~~~g~~p~~la~~~d~~~lyv~~----------~~v~  247 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFT---------------VEKQFKFKLGDWPSEVQLNGTRDTLYWIN----------NDIW  247 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTE---------------EEEEEECCTTCCCEEEEECTTSCEEEEES----------SSEE
T ss_pred             ccCCccccCCceEEEEECCCCe---------------EEEEEecCCCCCceeEEEecCCCEEEEEc----------cEEE
Confidence                      789999988642               22222211 23679999999999888532          2899


Q ss_pred             EEecCCCcccccchhhh--hhhccCceEEEeeecC
Q 016547          355 IWRMSDLIYRPQDEVLA--ELEKFKAHVISCTSKP  387 (387)
Q Consensus       355 iw~~~~~~~~~~~~~~~--~~~~~~~~v~~~~f~P  387 (387)
                      +||..      +++...  .+.........++++|
T Consensus       248 ~~d~~------t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          248 RMPVE------ADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             EEETT------CSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             EEECC------CCceeeeeeecCCCCceEEEEEcC
Confidence            99987      444321  1111235567777765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.52  E-value=8.2e-12  Score=104.46  Aligned_cols=225  Identities=11%  Similarity=0.089  Sum_probs=143.5

Q ss_pred             eEEEEECCCCCEEEE-------ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc
Q 016547           90 EFALAMCPTEPYVLS-------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  162 (387)
Q Consensus        90 v~~~~~~~~~~~l~s-------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (387)
                      ..+++|+++++.+++       +..++.|..||..++.......                                    
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------------------------------   63 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------------------------------------   63 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------------------------------------
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe------------------------------------
Confidence            479999999988887       6778999999976543210000                                    


Q ss_pred             eeecCCCCCeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCCceeEE-ee----ccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          163 GIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKV-EK----AHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      ....++...+.++++.++ + +++++.. .+.|.+||.. ++  .... ..    .....+..+++++ +++++++...+
T Consensus        64 ~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~  137 (314)
T 1pjx_A           64 PEVNGYGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAG  137 (314)
T ss_dssp             CEETTEECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBC
T ss_pred             cccCCCCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CC--EEEEEeccCCCccccCCcCEEECC-CCCEEEEecCc
Confidence            000123456889999999 6 6555554 4479999987 55  2221 11    1123578999999 88877776655


Q ss_pred             ---------------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc----CCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          237 ---------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS----PDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       237 ---------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                                     +.|..||..       ++.. .+..+......++|+    |+++.++++...++.|.+||+...+
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~-------g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g  209 (314)
T 1pjx_A          138 EVAPADYTRSMQEKFGSIYCFTTD-------GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA  209 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTT-------SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred             ccccccccccccCCCCeEEEECCC-------CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence                           456656543       2222 222233456889999    9997777777778999999986312


Q ss_pred             ceeccCCCCCCCCceeeeeeccCC-CCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          298 KKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      ....         ......+..+. ..+..++++++|..++ +       ...++.|.+||..      +++.+..+..+
T Consensus       210 ~~~~---------~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~-------~~~~~~i~~~d~~------~g~~~~~~~~~  266 (314)
T 1pjx_A          210 KIEN---------KKVWGHIPGTHEGGADGMDFDEDNNLLV-A-------NWGSSHIEVFGPD------GGQPKMRIRCP  266 (314)
T ss_dssp             EEEE---------EEEEEECCCCSSCEEEEEEEBTTCCEEE-E-------EETTTEEEEECTT------CBSCSEEEECS
T ss_pred             cccc---------ceEEEECCCCCCCCCCceEECCCCCEEE-E-------EcCCCEEEEEcCC------CCcEeEEEeCC
Confidence            1100         01223334444 5678899999987555 2       2234799999987      56665666656


Q ss_pred             CceEEEeeecC
Q 016547          377 KAHVISCTSKP  387 (387)
Q Consensus       377 ~~~v~~~~f~P  387 (387)
                      ...+.+++|+|
T Consensus       267 ~~~~~~i~~~~  277 (314)
T 1pjx_A          267 FEKPSNLHFKP  277 (314)
T ss_dssp             SSCEEEEEECT
T ss_pred             CCCceeEEECC
Confidence            67788888865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=6.3e-11  Score=99.54  Aligned_cols=232  Identities=8%  Similarity=-0.011  Sum_probs=145.7

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      -..+..|+|.++.++++...++.|..||.++++            . ..+. ... .+.++.|+++|+++++. . ..|.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~v~~i~~~~dg~l~v~~-~-~gl~  112 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGR------------K-TVHA-LPF-MGSALAKISDSKQLIAS-D-DGLF  112 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------E-EEEE-CSS-CEEEEEEEETTEEEEEE-T-TEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------E-EEEE-CCC-cceEEEEeCCCeEEEEE-C-CCEE
Confidence            346788999667788888888999999988762            1 1222 222 58899999999887765 3 4588


Q ss_pred             EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC--
Q 016547          113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD--  190 (387)
Q Consensus       113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--  190 (387)
                      +||..++........                                    ........+.++.+.|+| +++++...  
T Consensus       113 ~~d~~~g~~~~~~~~------------------------------------~~~~~~~~~~~i~~d~~G-~l~v~~~~~~  155 (326)
T 2ghs_A          113 LRDTATGVLTLHAEL------------------------------------ESDLPGNRSNDGRMHPSG-ALWIGTMGRK  155 (326)
T ss_dssp             EEETTTCCEEEEECS------------------------------------STTCTTEEEEEEEECTTS-CEEEEEEETT
T ss_pred             EEECCCCcEEEEeeC------------------------------------CCCCCCCCCCCEEECCCC-CEEEEeCCCc
Confidence            999865432110000                                    000112358899999998 55554432  


Q ss_pred             ----CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEec--cC-CCCCCCCceEEeccc
Q 016547          191 ----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRR--NL-TSNGVGSPINKFEGH  262 (387)
Q Consensus       191 ----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~--~~-~~~~~~~~~~~~~~~  262 (387)
                          .+.|..++  +++   ...+.........++|+| +++.++.+ +.++.|.+||..  +. .. ...+.+..+...
T Consensus       156 ~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~  228 (326)
T 2ghs_A          156 AETGAGSIYHVA--KGK---VTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGI  228 (326)
T ss_dssp             CCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTS
T ss_pred             CCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcc-cCceEEEECCCC
Confidence                24555555  333   222223334577999999 88766544 557899999986  31 10 000122233333


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCCCeEEEEec
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVS  341 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~s~s  341 (387)
                      ...+..+++.++|. ++++...++.|.+||...  +              .+..+..+...+++++|+ ++++.|+++..
T Consensus       229 ~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g--~--------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          229 KGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG--N--------------HIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SSEEEEEEECTTSC-EEEEEETTTEEEEECTTC--C--------------EEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC--C--------------EEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            45678899999997 455555578899999842  1              233344455679999998 88888877655


Q ss_pred             C
Q 016547          342 D  342 (387)
Q Consensus       342 ~  342 (387)
                      .
T Consensus       292 ~  292 (326)
T 2ghs_A          292 R  292 (326)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=5.2e-12  Score=103.11  Aligned_cols=191  Identities=8%  Similarity=0.020  Sum_probs=135.1

Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC-CCeEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVT  176 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~  176 (387)
                      .++.|++++.|+.|.+||.++++..                                        ..+..+. ..+.++.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~----------------------------------------w~~~~~~~~~~~~~~   43 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV----------------------------------------WEYPLEKGWECNSVA   43 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE----------------------------------------EEEECCTTCCCCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE----------------------------------------EEeCCCccCCCcCeE
Confidence            4678999999999999998766443                                        2333333 4678899


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc-CCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~  254 (387)
                      +.|+| ++++  +.++.|..||. +++  .+..+..+ ...+.++.+.+ +++++++.+. ++.|..+|. +      ++
T Consensus        44 ~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~------Gk  109 (276)
T 3no2_A           44 ATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-K------GE  109 (276)
T ss_dssp             ECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-T------SC
T ss_pred             ECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-C------CC
Confidence            99998 6677  35788999998 666  45555543 35788899999 9999999887 777777775 3      66


Q ss_pred             ceEEecc------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547          255 PINKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       255 ~~~~~~~------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                      .+.++..      +......+++.++|.+ +++...++.|..||.. ++               .+..+... ..+.++.
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~-G~---------------~~w~~~~~-~~~~~~~  171 (276)
T 3no2_A          110 VLSKTEFETGIERPHAQFRQINKNKKGNY-LVPLFATSEVREIAPN-GQ---------------LLNSVKLS-GTPFSSA  171 (276)
T ss_dssp             EEEEEEECCSCSSGGGSCSCCEECTTSCE-EEEETTTTEEEEECTT-SC---------------EEEEEECS-SCCCEEE
T ss_pred             EEEEEeccCCCCcccccccCceECCCCCE-EEEecCCCEEEEECCC-CC---------------EEEEEECC-CCcccee
Confidence            6666541      2223456678899985 5688889999999987 42               23333332 3456778


Q ss_pred             EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      ..+++..++        +++.++.|..+|..      +++.+.++.
T Consensus       172 ~~~~g~~~v--------~~~~~~~v~~~d~~------tG~~~w~~~  203 (276)
T 3no2_A          172 FLDNGDCLV--------ACGDAHCFVQLNLE------SNRIVRRVN  203 (276)
T ss_dssp             ECTTSCEEE--------ECBTTSEEEEECTT------TCCEEEEEE
T ss_pred             EcCCCCEEE--------EeCCCCeEEEEeCc------CCcEEEEec
Confidence            888888776        44455789999988      566655543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=7e-12  Score=117.44  Aligned_cols=222  Identities=11%  Similarity=0.007  Sum_probs=136.2

Q ss_pred             ceEEEEECCCCCEEEEecCC-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547           89 AEFALAMCPTEPYVLSGGKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  163 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (387)
                      .+..+.|||||++|+.++.+     ..|++||+.++....                                        
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----------------------------------------  203 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----------------------------------------  203 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------------------------------------
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------------------------------------
Confidence            57899999999999876543     469999998653211                                        


Q ss_pred             eecCCCCCeEEEEEccCCCeeEEEecCCC-------------eEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCC
Q 016547          164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDN  228 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~  228 (387)
                       ...+...+..++|+|| ..++++.....             .|++|++.++.......+  ..+...+..+.|+| +++
T Consensus       204 -~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~  280 (741)
T 1yr2_A          204 -DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGR  280 (741)
T ss_dssp             -EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSC
T ss_pred             -ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCC
Confidence             0011112357899999 56555543222             389999877652212222  22334588999999 999


Q ss_pred             eEEEeeCCC-----eEEEEEeccCCCCCCC--CceEEeccccceEEEEEEcCCCCeeEEEecC---CCeEEEEeCCCCCc
Q 016547          229 LILTGSADN-----SVRMFDRRNLTSNGVG--SPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGK  298 (387)
Q Consensus       229 ~l~~~~~dg-----~i~~~d~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~---d~~i~vwd~~~~~~  298 (387)
                      +|+..+.++     .|.+||+.+      +  .+...+..+...+.... +|+|+.+++....   ++.|.+||+.... 
T Consensus       281 ~l~~~~~~~~~~~~~l~~~d~~~------~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-  352 (741)
T 1yr2_A          281 WVVITSSEGTDPVNTVHVARVTN------GKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-  352 (741)
T ss_dssp             EEEEEEECTTCSCCEEEEEEEET------TEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-
T ss_pred             EEEEEEEccCCCcceEEEEECCC------CCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-
Confidence            888877654     899999986      4  31445544444444443 4888876544432   4569999987631 


Q ss_pred             eeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cC
Q 016547          299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FK  377 (387)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~  377 (387)
                      .            .....+..+...+..++|.  +..++++...|       +..+||.++.     .++.+..+.. +.
T Consensus       353 ~------------~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~~~~  406 (741)
T 1yr2_A          353 P------------RFDTVVPESKDNLESVGIA--GNRLFASYIHD-------AKSQVLAFDL-----DGKPAGAVSLPGI  406 (741)
T ss_dssp             C------------EEEEEECCCSSEEEEEEEE--BTEEEEEEEET-------TEEEEEEEET-----TSCEEEECBCSSS
T ss_pred             c------------ccEEEecCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCceeeccCCCC
Confidence            0            1122223444556677776  55677766555       7777776651     2334444443 35


Q ss_pred             ceEEEeeecC
Q 016547          378 AHVISCTSKP  387 (387)
Q Consensus       378 ~~v~~~~f~P  387 (387)
                      +.|..++++|
T Consensus       407 ~~v~~~~~s~  416 (741)
T 1yr2_A          407 GSASGLSGRP  416 (741)
T ss_dssp             CEEEEEECCB
T ss_pred             eEEEEeecCC
Confidence            6677777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=1.5e-10  Score=96.27  Aligned_cols=230  Identities=9%  Similarity=0.063  Sum_probs=146.6

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ++...........|.|+...+++++..++.|..|+.. +            . ...+..+.. .+..++++++|+++++.
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g------------~-~~~~~~~~~-~~~gl~~d~dG~l~v~~  103 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G------------T-VDVLLDATA-FTNGNAVDAQQRLVHCE  103 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S------------C-EEEEEESCS-CEEEEEECTTSCEEEEE
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C------------C-EEEEeCCCC-ccceeeECCCCCEEEEE
Confidence            3444556678899999433478888889999999873 3            1 233444444 57899999999977766


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CCCCeEEEEEccCCCee
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  184 (387)
                      ..++.|..|+.+ +......                                     ....+ ....+.++++.++| .+
T Consensus       104 ~~~~~v~~~~~~-g~~~~~~-------------------------------------~~~~~~~~~~~~~i~~d~dG-~l  144 (305)
T 3dr2_A          104 HGRRAITRSDAD-GQAHLLV-------------------------------------GRYAGKRLNSPNDLIVARDG-AI  144 (305)
T ss_dssp             TTTTEEEEECTT-SCEEEEE-------------------------------------CEETTEECSCCCCEEECTTS-CE
T ss_pred             CCCCEEEEECCC-CCEEEEE-------------------------------------eccCCCccCCCCCEEECCCC-CE
Confidence            666889999875 2111000                                     00001 12346779999998 66


Q ss_pred             EEE----ecC-------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------CeEEE
Q 016547          185 FCS----VGD-------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRM  241 (387)
Q Consensus       185 l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~~  241 (387)
                      +++    |..             .+.|..+|..+++..  .. . .......++|+| +++.|+.+...      +.|..
T Consensus       145 ~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~-~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~  219 (305)
T 3dr2_A          145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RM-A-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITA  219 (305)
T ss_dssp             EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EE-E-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEE
T ss_pred             EEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EE-e-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEE
Confidence            765    332             356788887666622  22 2 334678899999 89877777665      78999


Q ss_pred             EEeccCCCCCCCCceE---Ee-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          242 FDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      ||+..      .. +.   .+ .........+++.++|+ |.++ ..+ .|.+|+....                .+..+
T Consensus       220 ~~~~~------~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~-~~~-gv~~~~~~g~----------------~~~~~  273 (305)
T 3dr2_A          220 FAWRD------GA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSS-SGT-GVCVFDSDGQ----------------LLGHI  273 (305)
T ss_dssp             EEEET------TE-EEEEEEEECCSSSCCCSEEECTTSC-EEEC-CSS-EEEEECTTSC----------------EEEEE
T ss_pred             EEecC------CC-ccCCeEEEECCCCCCCeEEECCCCC-EEEe-cCC-cEEEECCCCC----------------EEEEE
Confidence            99875      22 11   11 11223445789999998 5533 334 5999997531                23333


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEec
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ..+. .+..++|+++++.|.++++
T Consensus       274 ~~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          274 PTPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             ECSS-CCCEEEECTTSCEEEEEET
T ss_pred             ECCC-ceeEEEEeCCCCEEEEEcC
Confidence            3333 5889999999888886543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=5.2e-11  Score=103.02  Aligned_cols=208  Identities=10%  Similarity=0.077  Sum_probs=129.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ....++|+++++++++...++.|+.||..++...                                        ..... 
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~----------------------------------------~~~~~-  170 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT----------------------------------------TVHPG-  170 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE----------------------------------------EEEET-
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE----------------------------------------Eeecc-
Confidence            3579999999998788777899999998754321                                        11111 


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCC--eEEEEEccCCCCceeEEe---ec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVE---KA-HDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      ..... ++|++++ +.++++..++  .|.+++......  ....   .. ....+.+++++| ++..|+++..++.|+.|
T Consensus       171 ~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~  245 (409)
T 3hrp_A          171 FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRF  245 (409)
T ss_dssp             CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEE
T ss_pred             CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEE
Confidence            22233 8999998 5666666655  799999876652  2222   12 456788999999 55556667778999999


Q ss_pred             EeccCCCCCCCCceEEe-----ccccceE--EEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          243 DRRNLTSNGVGSPINKF-----EGHSAAV--LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~-----~~~~~~i--~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      |...      .. ...+     .++...-  ..++|+|++..|+++...++.|+.|+....................  .
T Consensus       246 d~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg--~  316 (409)
T 3hrp_A          246 NVKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDG--L  316 (409)
T ss_dssp             ETTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCE--E
T ss_pred             ECCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCC--c
Confidence            9876      33 2222     1111111  2899999766688888889999999976521110000000000000  0


Q ss_pred             eeccCCCCeeEEEEccCCCeEEEEecCCCCCCC-CCceEEEEecC
Q 016547          316 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-GGGTLQIWRMS  359 (387)
Q Consensus       316 ~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~-~dg~i~iw~~~  359 (387)
                      .....-.....++++|+|. ++++       -. .++.|+.|++.
T Consensus       317 ~~~~~~~~P~gia~d~dG~-lyva-------d~~~~~~I~~~~~~  353 (409)
T 3hrp_A          317 REEALFAQPNGMTVDEDGN-FYIV-------DGFKGYCLRKLDIL  353 (409)
T ss_dssp             GGGCBCSSEEEEEECTTCC-EEEE-------ETTTTCEEEEEETT
T ss_pred             ccccEeCCCeEEEEeCCCC-EEEE-------eCCCCCEEEEEECC
Confidence            0001123578999999998 4443       33 45899999976

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.43  E-value=4.6e-11  Score=100.60  Aligned_cols=247  Identities=11%  Similarity=0.075  Sum_probs=150.9

Q ss_pred             EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC------CCceEEEEECCCC
Q 016547           36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE   99 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------~~~v~~~~~~~~~   99 (387)
                      .++++| +++++.+++          .++.|.+||..+.            +.+..+....      +..-..+.++|||
T Consensus        82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence            399999 676665554          3678999999998            4444443211      0112479999999


Q ss_pred             CEEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547          100 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus       100 ~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      ++++++..  ++.|.++|+.+.+...                                        .+..  ..  +...
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~----------------------------------------tI~v--~g--~~~~  184 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKR----------------------------------------MLDV--PD--CYHI  184 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEE----------------------------------------EEEC--CS--EEEE
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEE----------------------------------------EEEC--CC--ccee
Confidence            99888764  6899999998754322                                        1111  01  1122


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccC-CCCceeEEeecc----CCCe-eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH----DADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----~~~i-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      .|.+.+.+++.+.||.+.+.++.. ++.  ......+    ..++ ....|.+.++++++ .+.+|.|.+.|+....   
T Consensus       185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~---  258 (386)
T 3sjl_D          185 FPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD---  258 (386)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS---
T ss_pred             ecCCCceeEEECCCCCEEEEECCCCCeE--EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc---
Confidence            354445677778889988888876 442  1111111    1122 12455432665554 5568999999997521   


Q ss_pred             CCCceEEec----------cccceEEEEEEcCCCCeeEEEecC---------CCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547          252 VGSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       252 ~~~~~~~~~----------~~~~~i~~~~~~~~~~~ll~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                       .+.+..+.          ........++++++++.++++-..         .+.|.+.|+.+...              
T Consensus       259 -~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv--------------  323 (386)
T 3sjl_D          259 -AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--------------  323 (386)
T ss_dssp             -CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--------------
T ss_pred             -ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE--------------
Confidence             11222221          011223357779999988766431         25799999988522              


Q ss_pred             eeeeeccCCCCeeEEEEccCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc
Q 016547          313 LFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  375 (387)
Q Consensus       313 ~~~~~~~~~~~v~~~~~~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~  375 (387)
                       +..+.- ...+.+++++++++ .|+++.       ..++.|.++|..      +++.++++..
T Consensus       324 -~~~i~v-g~~~~~lavs~D~~~~ly~tn-------~~~~~VsViD~~------t~k~~~~i~~  372 (386)
T 3sjl_D          324 -LAKFEM-GHEIDSINVSQDEKPLLYALS-------TGDKTLYIHDAE------SGEELRSVNQ  372 (386)
T ss_dssp             -EEEEEE-EEEECEEEECSSSSCEEEEEE-------TTTTEEEEEETT------TCCEEEEECC
T ss_pred             -EEEEEC-CCCcceEEECCCCCeEEEEEc-------CCCCeEEEEECC------CCcEEEEecC
Confidence             222221 13678999999997 566533       345999999999      7888777653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=2e-10  Score=96.51  Aligned_cols=218  Identities=11%  Similarity=0.051  Sum_probs=136.4

Q ss_pred             eEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           90 EFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        90 v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ..+..|+|++. .+++...++.|..||..++..                                         ..+. .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~~-~   88 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-----------------------------------------TVHA-L   88 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------------------------------------EEEE-C
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEEE-C
Confidence            35788999755 556666788999999875321                                         1111 2


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeC------CCeEE
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSA------DNSVR  240 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~------dg~i~  240 (387)
                      ...+.++.|.+++ +++++. . ..|.+||..+++.........  ....++.++++| +++++++...      .+.|.
T Consensus        89 ~~~v~~i~~~~dg-~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDS-KQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETT-EEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCC-eEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEE
Confidence            3568999999998 666554 3 359999988776211111111  123578999999 8887665542      24455


Q ss_pred             EEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC-CCC-ceeccCCCCCCCCceeeeeec
Q 016547          241 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVG-KKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~-~~~-~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      .++  .      ++... +.........++|+|+++.++++.+.++.|.+||+. ..+ ...         ....+..+.
T Consensus       165 ~~~--~------g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~~~  226 (326)
T 2ghs_A          165 HVA--K------GKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFIDST  226 (326)
T ss_dssp             EEE--T------TEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEECT
T ss_pred             EEe--C------CcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEECC
Confidence            555  3      43322 222334567899999999777777778999999986 111 110         011222333


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      .....+..+++.++|..++++ .       .++.|.+|+..       ++.+..+..+...+++++|.
T Consensus       227 ~~~~~p~gi~~d~~G~lwva~-~-------~~~~v~~~d~~-------g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          227 GIKGGMDGSVCDAEGHIWNAR-W-------GEGAVDRYDTD-------GNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             TSSSEEEEEEECTTSCEEEEE-E-------TTTEEEEECTT-------CCEEEEEECSCSBEEEEEEE
T ss_pred             CCCCCCCeeEECCCCCEEEEE-e-------CCCEEEEECCC-------CCEEEEEECCCCCcEEEEEe
Confidence            344567889999998755532 1       23789999875       44555566566678888886

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=3.8e-11  Score=111.48  Aligned_cols=201  Identities=11%  Similarity=0.121  Sum_probs=127.1

Q ss_pred             ceEEEEECCCCCEEEE-----ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547           89 AEFALAMCPTEPYVLS-----GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  163 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (387)
                      .+..+.|||||++|+.     |+.+..|++||+.++....                                       .
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------------------------------~  170 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------------------------------T  170 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------------------------------E
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------------------------------c
Confidence            5788999999999883     3444689999998753211                                       0


Q ss_pred             eecCCCCCeEEEEEccCCCeeEEEecCCC-------------eEEEEEccCCCCc--eeEEeec-cCCCeeEEEecCCCC
Q 016547          164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSP--VIKVEKA-HDADLHCVDWNPLDD  227 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------------~i~iwd~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~  227 (387)
                      .+..  .....++|+ |+ +.|+.++.+.             .|++|++.+....  .+..... |......+.|+| ++
T Consensus       171 ~~~~--~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg  245 (693)
T 3iuj_A          171 PLKD--VKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DD  245 (693)
T ss_dssp             EEEE--EESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TS
T ss_pred             ccCC--ceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CC
Confidence            1111  112567899 88 5555555543             4999998876532  2222333 455678899999 88


Q ss_pred             CeEEEeeC----CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC---CeEEEEeCCCCCcee
Q 016547          228 NLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKV  300 (387)
Q Consensus       228 ~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d---~~i~vwd~~~~~~~~  300 (387)
                      ++|+....    ++.|.++|+.+.     ......+..+....... +++++..+++....+   +.|..+|+...... 
T Consensus       246 ~~l~~~~~~~~~~~~i~~~d~~~~-----~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-  318 (693)
T 3iuj_A          246 RFLLISAANSTSGNRLYVKDLSQE-----NAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-  318 (693)
T ss_dssp             CEEEEEEESSSSCCEEEEEETTST-----TCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-
T ss_pred             CEEEEEEccCCCCcEEEEEECCCC-----CCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-
Confidence            88765443    358999998762     12344555555554444 667777666666544   67999998874321 


Q ss_pred             ccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                                  ....+..|...+.  .|++++++|+++...+     ....|++|++.
T Consensus       319 ------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~  358 (693)
T 3iuj_A          319 ------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYE  358 (693)
T ss_dssp             ------------GCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTT
T ss_pred             ------------ccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECC
Confidence                        0122344555554  8999999988766544     11268888887

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.35  E-value=5.3e-09  Score=89.19  Aligned_cols=269  Identities=7%  Similarity=-0.032  Sum_probs=154.2

Q ss_pred             CCcEEEEecC--CC---cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------C
Q 016547           43 NTKIVATHTD--SP---DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------K  107 (387)
Q Consensus        43 ~~~~l~t~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~  107 (387)
                      +++++.+...  ..   +|.++|..++            +.+..+..-.. +  .+.++|||++++.+.          .
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~------------~~~~~i~~g~~-p--~i~~spDg~~lyv~n~~~~~~~rg~~   95 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSG------------SILGHVNGGFL-P--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCC------------eEEEEecCCCC-C--CeEECCCCCEEEEEeccccccccCCC
Confidence            6666655543  33   8899999888            44444443332 2  899999999998875          3


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      ++.|.+||..+..........                               .. .... +......+.|+|+| ++|++
T Consensus        96 ~~~v~viD~~t~~~~~~i~~~-------------------------------~~-~~~~-~g~~p~~~~~spDG-~~l~v  141 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIELP-------------------------------DA-PRFD-VGPYSWMNANTPNN-ADLLF  141 (373)
T ss_pred             CCeEEEEECCCCcEEEEEECC-------------------------------Cc-cccc-cCCCccceEECCCC-CEEEE
Confidence            678999999754322111000                               00 0000 01234578999999 55665


Q ss_pred             ec-C-CCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec----
Q 016547          188 VG-D-DSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE----  260 (387)
Q Consensus       188 ~~-~-dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----  260 (387)
                      +. . ++.|.++| .+++  .... +. ...   ++.+.|...+.+++.+.||.+.++|. +      ++.+....    
T Consensus       142 ~n~~~~~~v~viD-~t~~--~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~------g~~~~~~~~~~~  207 (373)
T 2mad_H          142 FQFAAGPAVGLVV-QGGS--SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A------GGAAGAGLVGAM  207 (373)
T ss_pred             EecCCCCeEEEEE-CCCC--EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C------CcEEEEEecccc
Confidence            54 3 58899999 8876  3433 32 222   24455534567777888999999999 6      55443221    


Q ss_pred             -cccce-EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          261 -GHSAA-VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       261 -~~~~~-i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                       ....+ .....+.+++..++... .++.+.+.|+.......... ... .. ...............++++|+++.+++
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~-~~~-~~-~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAP-IDA-LS-GGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeee-eee-cC-CcccccceecCceEeEEECCCCCEEEE
Confidence             11112 23345666665544343 57899999997532211000 000 00 000000001223445789999998887


Q ss_pred             EecCCCCCC----CCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          339 SVSDDCDST----GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       339 s~s~d~~tg----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +....  ..    ..++.|.++|+.      +++.+.++. ......+++|+|
T Consensus       284 ~~~~~--~~~~~~~~~~~V~VID~~------t~~vv~~i~-~g~~p~~i~~s~  327 (373)
T 2mad_H          284 LTSEQ--SAWKLHAAAKEVTSVTGL------VGQTSSQIS-LGHDVDAISVAQ  327 (373)
T ss_pred             EeccC--CcccccCCCCeEEEEECC------CCEEEEEEE-CCCCcCeEEECC
Confidence            65421  10    124689999998      777777774 233567777775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=9.8e-11  Score=100.44  Aligned_cols=267  Identities=9%  Similarity=0.021  Sum_probs=157.9

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------CCCeEEEEEcCCCcCcc
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS  123 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~~~~~  123 (387)
                      +.|.++|..+.            +.+..+..-.. +  .+.++|||++|+++.          .++.|.++|..+.....
T Consensus        99 ~~VsVID~~t~------------~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~  163 (426)
T 3c75_H           99 TQQFVIDGSTG------------RILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA  163 (426)
T ss_dssp             EEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CeEEEEECCCC------------EEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence            79999999998            55555554443 4  899999999988776          36789999998875543


Q ss_pred             ccCCC-----------cccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          124 ATDPA-----------TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       124 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      .....           ........+..++.........+.+.+..+.+.+..+.-..    +....|++...+++.+.||
T Consensus       164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTS
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCC
Confidence            32211           11122222322322222223345555555555544443211    1234455546677777888


Q ss_pred             eEEEEEccCCCCcee--EEeeccCCCe-eEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-------cc
Q 016547          193 CLILWDARVGTSPVI--KVEKAHDADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-------GH  262 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~--~~~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~  262 (387)
                      .+.+.+..+++....  ..+.....++ ..+.+.+ ++..++..+..+.+.+.|+....    ...+..+.       ..
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~----~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEG----ATFRAPIEALTEAERAD  314 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSC----EEECCCEESSCTTTGGG
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCc----eEEeeeeeecccccccc
Confidence            888888854441100  0111111111 2356788 77777777788999999986421    00111110       00


Q ss_pred             ---cceEEEEEEcCCCCeeEEEec---------CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          263 ---SAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       263 ---~~~i~~~~~~~~~~~ll~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                         ......++++|++++++++..         .++.|.++|+.+..               .+..+.. ......++|+
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------------vv~~I~v-g~~P~gia~s  378 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------------RINKIEL-GHEIDSINVS  378 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------------EEEEEEE-EEEECEEEEC
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------------EEEEEEC-CCCcCeEEEc
Confidence               111123689999998876643         13579999998852               2333322 1257899999


Q ss_pred             cCCC-eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          331 ASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       331 ~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                      |+++ .++++..       .++.|.++|+.      +++.++++
T Consensus       379 pDg~~~lyv~n~-------~s~~VsVID~~------t~kvv~tI  409 (426)
T 3c75_H          379 QDAEPLLYALSA-------GTQTLHIYDAA------TGEELRSV  409 (426)
T ss_dssp             CSSSCEEEEEET-------TTTEEEEEETT------TCCEEEEE
T ss_pred             cCCCEEEEEEcC-------CCCeEEEEECC------CCCEEEEe
Confidence            9999 6665433       34999999999      77777775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=3.6e-10  Score=95.67  Aligned_cols=247  Identities=9%  Similarity=0.038  Sum_probs=143.9

Q ss_pred             CcEEEEEecCCCCcEEEEec--CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC--
Q 016547           32 GEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK--  107 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~--  107 (387)
                      ..+..+++++ +++++++..  .++.++||.+.+++. ..+...   .  ....+|-. .+..++++++++++++-..  
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~---~--~~~~~~~~-~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQ---S--GNAIITFD-TVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCC---C--SSCCCCCS-CEEEEEECSSSEEEEEECHHH
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCc---c--cCccccee-EeeEEEEcCCCcEEEEcCCCC
Confidence            6789999999 788888853  234366676653311 100000   0  00112333 5789999999876665433  


Q ss_pred             ---CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          108 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       108 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                         ++.|.+||+.++.........                                  .....+...+..+++.++++..
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~----------------------------------~~~~~~~~~~~~v~vd~~~g~~  134 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLP----------------------------------PPITLSNSFVNDLAVDLIHNFV  134 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECC----------------------------------TTTSCTTCCCCEEEEETTTTEE
T ss_pred             cCCCCeEEEEECCCCeEEEEEECC----------------------------------hhhcccccccceEEEecCCCEE
Confidence               578999999865422111000                                  0001123456789999865466


Q ss_pred             EEEec---CCCeEEEEEccCCCCceeEEeecc-----------------------------CCCeeEEEecCCCCCeEEE
Q 016547          185 FCSVG---DDSCLILWDARVGTSPVIKVEKAH-----------------------------DADLHCVDWNPLDDNLILT  232 (387)
Q Consensus       185 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~~l~~  232 (387)
                      +++..   .++.|.+||+.+++  .......|                             ...+..|+++| +++.|+.
T Consensus       135 yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~  211 (343)
T 2qe8_A          135 YISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYL  211 (343)
T ss_dssp             EEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEE
T ss_pred             EEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEE
Confidence            67766   67899999998765  23322211                             12357899999 8988888


Q ss_pred             eeCCC-eEEEEEeccCCCCCC--CCceE--EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547          233 GSADN-SVRMFDRRNLTSNGV--GSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       233 ~~~dg-~i~~~d~~~~~~~~~--~~~~~--~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  307 (387)
                      +..++ .+..++.........  .+...  ...++......++++++|. ++++...++.|.+||...+ +.        
T Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~~--------  281 (343)
T 2qe8_A          212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-AY--------  281 (343)
T ss_dssp             EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-EE--------
T ss_pred             EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-CE--------
Confidence            87766 454444332110000  00000  1112333456799999987 6778888999999998432 11        


Q ss_pred             CCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                          ..+.. ..+...+.+++|.+++..+++
T Consensus       282 ----~~~~~-~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          282 ----KLLVT-DEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             ----EEEEE-CGGGSCEEEEEECTTSCEEEE
T ss_pred             ----EEEEE-CCceecCCeeEECCCCcEEEE
Confidence                11111 123456899999998765543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=7.7e-10  Score=92.01  Aligned_cols=216  Identities=11%  Similarity=0.054  Sum_probs=134.8

Q ss_pred             ceEEEEECCCCC-EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           89 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        89 ~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      ......|+++++ .+++...++.|..|+....                                          ...+..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~------------------------------------------~~~~~~   83 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT------------------------------------------VDVLLD   83 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC------------------------------------------EEEEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC------------------------------------------EEEEeC
Confidence            457899999998 5667777899999987321                                          123334


Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-eec-cCCCeeEEEecCCCCCeEEE----eeC------
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKA-HDADLHCVDWNPLDDNLILT----GSA------  235 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~~~l~~----~~~------  235 (387)
                      +...+..+++.++| +++++...++.|.+||.. ++...... ... ....++.++++| +++++++    |..      
T Consensus        84 ~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             SCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSC
T ss_pred             CCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCcccccccc
Confidence            45678999999998 666666667889999985 44111111 111 123467899999 8988886    432      


Q ss_pred             -------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC-----CCeEEEEeCCCCCceeccC
Q 016547          236 -------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEKVGKKVEQG  303 (387)
Q Consensus       236 -------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~-----d~~i~vwd~~~~~~~~~~~  303 (387)
                             .+.|..+|..+      ++.....  .....+.++|+|+++.|+++.+.     ++.|.+|++.... ...  
T Consensus       161 ~~~~~~~~~~v~~~d~~~------g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~--  229 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDG------SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD--  229 (305)
T ss_dssp             CCCCSSSCEEEEEECSSS------CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEE--
T ss_pred             ccccccCCCeEEEEcCCC------CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC--
Confidence                   24577777654      3333222  33456789999999976655544     2789999987532 100  


Q ss_pred             CCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547          304 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  383 (387)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  383 (387)
                             ...+.  .........+++.++|...+        +. . +.|.+|+..       ++.+..+.... .+..+
T Consensus       230 -------~~~~~--~~~~~~pdgi~~d~~G~lwv--------~~-~-~gv~~~~~~-------g~~~~~~~~~~-~~~~~  282 (305)
T 3dr2_A          230 -------RRHFA--SVPDGLPDGFCVDRGGWLWS--------SS-G-TGVCVFDSD-------GQLLGHIPTPG-TASNC  282 (305)
T ss_dssp             -------EEEEE--CCSSSCCCSEEECTTSCEEE--------CC-S-SEEEEECTT-------SCEEEEEECSS-CCCEE
T ss_pred             -------CeEEE--ECCCCCCCeEEECCCCCEEE--------ec-C-CcEEEECCC-------CCEEEEEECCC-ceeEE
Confidence                   01111  11234557789999998444        22 2 348889876       44555554433 46667


Q ss_pred             eecC
Q 016547          384 TSKP  387 (387)
Q Consensus       384 ~f~P  387 (387)
                      +|.|
T Consensus       283 ~f~~  286 (305)
T 3dr2_A          283 TFDQ  286 (305)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            7653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.32  E-value=1.3e-09  Score=92.47  Aligned_cols=234  Identities=10%  Similarity=0.017  Sum_probs=142.3

Q ss_pred             CCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe------ccCCCceEEEEECCCCCEEEEecCC------
Q 016547           41 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAMCPTEPYVLSGGKD------  108 (387)
Q Consensus        41 ~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~h~~~~v~~~~~~~~~~~l~s~~~d------  108 (387)
                      +....++++|..++.|.|+|+.+.+...        +...+++      ......-..+..+|+| .++++..+      
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p--------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~  163 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREP--------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP  163 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSC--------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCc--------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence            5455566778889999999997653221        2222331      0010012456778999 76666555      


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |.|.+.|.++..........                                     ......-..+.|+|++ +.+++.
T Consensus       164 g~v~vlD~~T~~v~~~~~~~-------------------------------------~~~~~~~Yd~~~~p~~-~~mvsS  205 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEID-------------------------------------RGDQYLAYDFWWNLPN-EVLVSS  205 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSB-------------------------------------CTTCCCCCCEEEETTT-TEEEEC
T ss_pred             CeEEEEECCCCeEEEEEccC-------------------------------------CCCccccceEEECCCC-CEEEEc
Confidence            78999998765433222110                                     0111223467889998 566666


Q ss_pred             c-------------------CCCeEEEEEccCCCCceeEEeecc--CCCeeEEEe--cCCCCCeEEEee------CCCeE
Q 016547          189 G-------------------DDSCLILWDARVGTSPVIKVEKAH--DADLHCVDW--NPLDDNLILTGS------ADNSV  239 (387)
Q Consensus       189 ~-------------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~l~~~~------~dg~i  239 (387)
                      .                   .+.+|.+||+.+++  ....+...  ......+.|  +| +++++.+++      .+++|
T Consensus       206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V  282 (462)
T 2ece_A          206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSI  282 (462)
T ss_dssp             BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEE
T ss_pred             cCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceE
Confidence            3                   37899999998765  34444332  123445555  99 888777776      45688


Q ss_pred             EEEEeccCCCCCCCCceEEe--cc----------------ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceec
Q 016547          240 RMFDRRNLTSNGVGSPINKF--EG----------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  301 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~--~~----------------~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~  301 (387)
                      .+|......    .+....+  ..                -......|.+++||++|+++.-..+.|.+||+......  
T Consensus       283 ~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~--  356 (462)
T 2ece_A          283 WLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP--  356 (462)
T ss_dssp             EEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--
T ss_pred             EEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--
Confidence            776654310    1111111  10                02346789999999999999988999999999753221  


Q ss_pred             cCCCCCCCCceeeeeeccC--------------CCCeeEEEEccCCCeEEEEe
Q 016547          302 QGPRTTNYPAGLFFQHAGH--------------RDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~s~  340 (387)
                                +++......              .+....++++|+|++|+++.
T Consensus       357 ----------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          357 ----------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ----------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ----------EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                      122222111              11358899999999999876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=3.2e-11  Score=101.75  Aligned_cols=252  Identities=11%  Similarity=-0.028  Sum_probs=151.8

Q ss_pred             EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC------CCceEEEEECCCC
Q 016547           36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE   99 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~------~~~v~~~~~~~~~   99 (387)
                      .+.++| +++.+.++.          .++.|.+||..+.            +.+..+..+.      ...-..+.++|||
T Consensus        69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG  135 (368)
T 1mda_H           69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------CEEEEEECCCccccccCCCcceEEEcCCC
Confidence            799999 666666654          3688999999999            5555554330      0012489999999


Q ss_pred             CEEEEecC--CCeEEE--EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547          100 PYVLSGGK--DKSVVL--WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus       100 ~~l~s~~~--d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      ++++++..  +..|.+  +|..+ .                                          ..+.. .+   ++
T Consensus       136 k~lyVan~~~~~~v~V~~iD~~t-v------------------------------------------~~i~v-~~---~~  168 (368)
T 1mda_H          136 ACLLFFLFGSSAAAGLSVPGASD-D------------------------------------------QLTKS-AS---CF  168 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEE-E------------------------------------------EEEEC-SS---CC
T ss_pred             CEEEEEccCCCCeEEEEEEchhh-c------------------------------------------eEEEC-CC---ce
Confidence            99998864  467888  88764 0                                          11110 00   12


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccC-----CCCcee--EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARV-----GTSPVI--KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      ...|++...+++.+.||.+.+.|+.+     ++....  ..+.....+.   . .+ ++..++..+. +.+.+.|.....
T Consensus       169 ~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~  242 (368)
T 1mda_H          169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAG  242 (368)
T ss_dssp             CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSC
T ss_pred             EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCc
Confidence            23455556677777888888888876     221000  0011112232   3 55 4555555556 999999986411


Q ss_pred             CCCCCCceEEecc-------cc---ceEEEEEEcCCCCeeEEEec---C-----CCeEEEEeCCCCCceeccCCCCCCCC
Q 016547          249 SNGVGSPINKFEG-------HS---AAVLCVQWSPDKSSVFGSSA---E-----DGLLNIWDYEKVGKKVEQGPRTTNYP  310 (387)
Q Consensus       249 ~~~~~~~~~~~~~-------~~---~~i~~~~~~~~~~~ll~s~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~  310 (387)
                          .+.+..+..       +.   .....++++|++++++++..   .     ++.+.++|+.+...            
T Consensus       243 ----~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v------------  306 (368)
T 1mda_H          243 ----ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT------------  306 (368)
T ss_dssp             ----CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE------------
T ss_pred             ----ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE------------
Confidence                111111110       11   11112689999998886544   2     23566999988522            


Q ss_pred             ceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          311 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                         +..+... .....++|+|+++++++++..      .+++|.++|+.      +++.++++.... .-+.++++
T Consensus       307 ---v~~i~vg-~~p~gi~~s~Dg~~l~va~~~------~~~~VsVID~~------t~kvv~~I~vg~-~P~~i~~~  365 (368)
T 1mda_H          307 ---SGPISNG-HDSDAIIAAQDGASDNYANSA------GTEVLDIYDAA------SDQDQSSVELDK-GPESLSVQ  365 (368)
T ss_dssp             ---EECCEEE-EEECEEEECCSSSCEEEEEET------TTTEEEEEESS------SCEEEEECCCCS-CCCEEECC
T ss_pred             ---EEEEECC-CCcceEEECCCCCEEEEEccC------CCCeEEEEECC------CCcEEEEEECCC-CCCEEEee
Confidence               3333222 257899999999988776541      24999999999      788888887443 33344443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.30  E-value=3.8e-08  Score=80.02  Aligned_cols=253  Identities=7%  Similarity=-0.058  Sum_probs=150.7

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCcc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~  123 (387)
                      .+|..+.. +.|+.++++.......       .....+..... ....++|++++..|+ +-..++.|..++....... 
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~-------~~~~~~~~~~~-~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-   71 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKT-------EAKAFLHIPAK-VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-   71 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGG-------GCEEEEEEEEE-EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-
T ss_pred             cEEEEEcC-CeEEEEEecCcccccc-------cceeeecCCCC-cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-
Confidence            34444443 4788888876521100       00111221111 357999999766555 4445789999998643110 


Q ss_pred             ccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCC
Q 016547          124 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  203 (387)
                                                             ............+++.++++.++++-...+.|.++++....
T Consensus        72 ---------------------------------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~  112 (267)
T 1npe_A           72 ---------------------------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (267)
T ss_dssp             ---------------------------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ---------------------------------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence                                                   11111224578999999765777777788899999987544


Q ss_pred             CceeEEeeccCCCeeEEEecCCCCCeEEEeeC---CCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeE
Q 016547          204 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVF  279 (387)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll  279 (387)
                      .  .............++++| ++..|..+..   .+.|..+++..       .....+. ..-.....+++++++.+|+
T Consensus       113 ~--~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg-------~~~~~~~~~~~~~P~gia~d~~~~~ly  182 (267)
T 1npe_A          113 R--RVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDG-------TNRRILAQDNLGLPNGLTFDAFSSQLC  182 (267)
T ss_dssp             C--EEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTS-------CCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             E--EEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCC-------CCcEEEEECCCCCCcEEEEcCCCCEEE
Confidence            2  122222225678999999 6555555443   36788887753       2222221 2224578999999988888


Q ss_pred             EEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          280 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       280 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++-...+.|.++|+.....               .....+ ......++.  ++.+++++...       ++.|.++|..
T Consensus       183 v~d~~~~~I~~~~~~g~~~---------------~~~~~~-~~~P~gi~~--d~~~lyva~~~-------~~~v~~~d~~  237 (267)
T 1npe_A          183 WVDAGTHRAECLNPAQPGR---------------RKVLEG-LQYPFAVTS--YGKNLYYTDWK-------TNSVIAMDLA  237 (267)
T ss_dssp             EEETTTTEEEEEETTEEEE---------------EEEEEC-CCSEEEEEE--ETTEEEEEETT-------TTEEEEEETT
T ss_pred             EEECCCCEEEEEecCCCce---------------EEEecC-CCCceEEEE--eCCEEEEEECC-------CCeEEEEeCC
Confidence            8888889999999875311               111111 223456665  35677765443       3899999998


Q ss_pred             CCcccccchhhhhhhccCc-eEEEeeecC
Q 016547          360 DLIYRPQDEVLAELEKFKA-HVISCTSKP  387 (387)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~-~v~~~~f~P  387 (387)
                            +++.+.++..... ....+++.|
T Consensus       238 ------~g~~~~~i~~g~~~~p~gi~~~~  260 (267)
T 1npe_A          238 ------ISKEMDTFHPHKQTRLYGITIAL  260 (267)
T ss_dssp             ------TTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ------CCCceEEEccccccccceeeecC
Confidence                  6776666653321 244555543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=3.1e-09  Score=89.89  Aligned_cols=213  Identities=10%  Similarity=0.037  Sum_probs=124.5

Q ss_pred             ceEEEEECCCCCEEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547           89 AEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  166 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (387)
                      ....++++++|+.+++..  .++.++||.+.++.. ..+..                               ..  ....
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~-------------------------------~~--~~~~   63 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPP-------------------------------QS--GNAI   63 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCC-------------------------------CC--SSCC
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCC-------------------------------cc--cCcc
Confidence            468999999999988853  234366676643211 00000                               00  0112


Q ss_pred             CCCCCeEEEEEccCCCeeEEEecC-----CCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCCCCeEEEee-
Q 016547          167 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGS-  234 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~-  234 (387)
                      .+...+.++++.+++ +++++-..     ++.|.+||+.+++  ....+..      +...+..+++++.++..+++-. 
T Consensus        64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            355679999999998 66665443     5789999998776  3333321      2245689999982344455554 


Q ss_pred             --CCCeEEEEEeccCCCCCCCCceEEeccc-----------------------------cceEEEEEEcCCCCeeEEEec
Q 016547          235 --ADNSVRMFDRRNLTSNGVGSPINKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       235 --~dg~i~~~d~~~~~~~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~ll~s~~  283 (387)
                        .++.|.+||+.+      ++..+.+..|                             ...+..++|+|+++.|+++..
T Consensus       141 ~~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          141 PDDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             SGGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             cCCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence              678999999876      3333322211                             123688999999997765554


Q ss_pred             CCCeEEEEeCCCCCceeccCCCCCCCCceee--eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF--FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....+..++........    .   ......  ....++......++++++|.. .++..       .++.|.+||..
T Consensus       215 ~~~~l~~~~~~~~~~~~----~---~~~~~~~~~~~~g~~g~pdgia~d~~G~l-~va~~-------~~~~V~~~d~~  277 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNLQ----L---TDAELGSKIERYSEKPICDGISIDKDHNI-YVGDL-------AHSAIGVITSA  277 (343)
T ss_dssp             SCSEEEEEEHHHHTCTT----C---CHHHHHTTCEEEEECCSCSCEEECTTCCE-EEEEG-------GGTEEEEEETT
T ss_pred             CCCeEEEEEHHHhcCCC----C---ChhhhhcceEecccCCCCceEEECCCCCE-EEEcc-------CCCeEEEEECC
Confidence            44455555542110000    0   000000  011234446678999998864 44443       34899999983

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=105.46  Aligned_cols=184  Identities=14%  Similarity=0.069  Sum_probs=98.8

Q ss_pred             CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCc
Q 016547           43 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        43 ~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  122 (387)
                      ++..|++++.||.|+.||..++            +.+..+..  + .+.+..+..++..+++++.|+.|..||.+++...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG------------~~~W~~~~--~-~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG------------SIKWTLKE--D-PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC------------CEEEEEEC--C-CSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCC------------CEEEEecC--C-CceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence            4568888999999999999999            45555554  2 3445555567878888889999999999776443


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  202 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  202 (387)
                      .......                                 .... ...++    +. .+ ..+++++.++.|+.||.+++
T Consensus        73 w~~~~~~---------------------------------~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG  112 (369)
T 2hz6_A           73 TKLPFTI---------------------------------PELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTG  112 (369)
T ss_dssp             EECSCCH---------------------------------HHHH-TTCSC----C-------CCCCEEEEEEEEECCC--
T ss_pred             eeeeccC---------------------------------cccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCC
Confidence            2211100                                 0000 01111    11 22 35777888999999999988


Q ss_pred             CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC---CeeE
Q 016547          203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVF  279 (387)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~ll  279 (387)
                      +.  ...+..+.    ...++| ++..+++++.|+.|+.||.++      ++.+..+..+.  ....++.++.   ..++
T Consensus       113 ~~--~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~~--~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          113 EK--QQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKT------RELRWNATYFD--YAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ---------------------------EEEEEEEEEEECCCSSS------SSCCCEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred             cE--EEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCC------CCEEEeEeccc--ccCccccCCccccceEE
Confidence            73  33333222    235567 788899999999999999998      76665554221  2233344432   3344


Q ss_pred             EEecCCCeEEEEeCCCCC
Q 016547          280 GSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       280 ~s~~~d~~i~vwd~~~~~  297 (387)
                       .++.||.|..||..++.
T Consensus       178 -~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          178 -VSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             -EEETSCEEEEECTTTCC
T ss_pred             -EECCCCEEEEEECCCCc
Confidence             67789999999998753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.19  E-value=1.2e-09  Score=93.66  Aligned_cols=236  Identities=13%  Similarity=0.094  Sum_probs=136.7

Q ss_pred             EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEecc--C----CCceEEEEECCCC
Q 016547           36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--Q----DNAEFALAMCPTE   99 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~----~~~v~~~~~~~~~   99 (387)
                      .++++| +++.|.++.          .++.|.++|..+.            +.+..+.-.  .    +..-..+.++|||
T Consensus       122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~------------~vv~~I~v~g~~r~~~g~~P~~~~~spDG  188 (426)
T 3c75_H          122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTF------------LPIADIELPDAPRFLVGTYQWMNALTPDN  188 (426)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred             ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCC------------cEEEEEECCCccccccCCCcceEEEcCCC
Confidence            799999 666665554          4678999999998            444443321  0    0112478999999


Q ss_pred             CEEEEecC--CCeEEEEEcCCCcCccccCCCcc--cCCCCCCceeccCCCCCCCCCCCCCCCCCCCc----eeecCCCCC
Q 016547          100 PYVLSGGK--DKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR----GIYNGHEDT  171 (387)
Q Consensus       100 ~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  171 (387)
                      ++|+++..  ++.|.+.|+.+.+..........  ..+.+.........   ++.....+....+..    ..+.....+
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~---dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR---DGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET---TSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC---CCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence            99998764  57999999998765443322110  00000000000000   111000000111100    011111111


Q ss_pred             e-EEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----------cCCCeeEEEecCCCCCeEEEeeC-----
Q 016547          172 V-EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSA-----  235 (387)
Q Consensus       172 v-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~-----  235 (387)
                      + ..+.+.+++..+++ .+..+.+.+.|+..........+..          .......++++| +++.+++...     
T Consensus       266 ~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~g  343 (426)
T 3c75_H          266 LINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEW  343 (426)
T ss_dssp             BCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTT
T ss_pred             eeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccc
Confidence            1 23567888844444 4567899999987654111111110          112223478999 7776666542     


Q ss_pred             -----CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCC-eeEEEecCCCeEEEEeCCCC
Q 016547          236 -----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       236 -----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ll~s~~~d~~i~vwd~~~~  296 (387)
                           ++.|.++|..+      .+.+.++.. .....+++|+|+++ .++++...++.|.++|+.+.
T Consensus       344 thk~~s~~VsVID~~T------~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          344 KHKAASRFVVVLNAET------GERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             CTTSCEEEEEEEETTT------CCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             cccCCCCEEEEEECCC------CeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence                 35799999999      888888863 34588999999998 76655557999999999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.18  E-value=4.2e-08  Score=78.27  Aligned_cols=207  Identities=8%  Similarity=0.030  Sum_probs=136.7

Q ss_pred             eeeeeeecCCCc--EEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           22 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        22 ~~~~~~~~h~~~--v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      .+....+.|...  ...++|++ ++.+.++.+.  ++.|.+.|+.++            +.+..+.-........+++. 
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg------------~v~~~i~l~~~~fgeGi~~~-   74 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTG------------KVENIHKMDDSYFGEGLTLL-   74 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEE-
T ss_pred             ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCC------------CEEEEEecCCCcceEEEEEe-
Confidence            455666778754  58999998 5666666543  679999999999            44444432221122345554 


Q ss_pred             CCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 TEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                       ++.| ++.-.++.+.++|..+.+..                                        ..+......  ...
T Consensus        75 -g~~lyv~t~~~~~v~viD~~t~~v~----------------------------------------~~i~~g~~~--g~g  111 (266)
T 2iwa_A           75 -NEKLYQVVWLKNIGFIYDRRTLSNI----------------------------------------KNFTHQMKD--GWG  111 (266)
T ss_dssp             -TTEEEEEETTCSEEEEEETTTTEEE----------------------------------------EEEECCSSS--CCE
T ss_pred             -CCEEEEEEecCCEEEEEECCCCcEE----------------------------------------EEEECCCCC--eEE
Confidence             4444 44456889999999865332                                        222111011  233


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      +++++..++ ++..++.|.++|..+.+  ....+.-  ..   ..++.+.|.  ++..++....++.|.+.|..+     
T Consensus       112 lt~Dg~~l~-vs~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t-----  181 (266)
T 2iwa_A          112 LATDGKILY-GSDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD-----  181 (266)
T ss_dssp             EEECSSSEE-EECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT-----
T ss_pred             EEECCCEEE-EECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC-----
Confidence            556774444 45568899999998877  3333321  11   235677877  466666655688999999998     


Q ss_pred             CCCceEEecccc-------------ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          252 VGSPINKFEGHS-------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       252 ~~~~~~~~~~~~-------------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                       ++.+..+....             ...+.|+|+|+++.+|+++...+.+.+.++...
T Consensus       182 -g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          182 -GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             88877775321             356899999999999999999999999998764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.16  E-value=4.6e-08  Score=78.05  Aligned_cols=198  Identities=11%  Similarity=0.028  Sum_probs=130.2

Q ss_pred             eEEEEECCCCCEEEEecC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           90 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      ...+.|++++...++.+.  +++|.+.|+.+++......                                      +..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------------------------------------l~~   64 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------------------------------------MDD   64 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------------------------------------CCT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------------------------------------cCC
Confidence            468999998755555443  5799999998764432111                                      111


Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      + .....+++.  ++.++++.-.++.+.++|..+.+  .+..+.....  ....+++ ++..++++..++.|.++|..+ 
T Consensus        65 ~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~--~g~glt~-Dg~~l~vs~gs~~l~viD~~t-  135 (266)
T 2iwa_A           65 S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMK--DGWGLAT-DGKILYGSDGTSILYEIDPHT-  135 (266)
T ss_dssp             T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSS--SCCEEEE-CSSSEEEECSSSEEEEECTTT-
T ss_pred             C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCC--CeEEEEE-CCCEEEEECCCCeEEEEECCC-
Confidence            1 122345554  43677777789999999998877  4444432211  2334556 667677777789999999988 


Q ss_pred             CCCCCCCceEEecccc--c---eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc---
Q 016547          248 TSNGVGSPINKFEGHS--A---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---  319 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~--~---~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  319 (387)
                           .+.+..+.--.  .   .++.+.|. ++ .+++....++.|.+.|..+......            + .+.+   
T Consensus       136 -----~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~------------I-~~~g~~~  195 (266)
T 2iwa_A          136 -----FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGW------------I-LLPNLRK  195 (266)
T ss_dssp             -----CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEE------------E-ECHHHHH
T ss_pred             -----CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEE------------E-ECCCccc
Confidence                 67676665321  1   36788888 66 4787877789999999988532211            1 1111   


Q ss_pred             --------CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          320 --------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       320 --------~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                              .....+.++|+|+++.+++++.       ..+.|.+-++...
T Consensus       196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-------~~~~v~~i~l~~~  238 (266)
T 2iwa_A          196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGK-------LWPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHTTCTTCCCEEEEEEETTTTEEEEEET-------TCSEEEEEEEEEC
T ss_pred             ccccccccccCceEEEEEcCCCCEEEEECC-------CCCeEEEEEEecc
Confidence                    1135689999999999998554       4489999998753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.14  E-value=1.3e-06  Score=70.86  Aligned_cols=200  Identities=5%  Similarity=-0.004  Sum_probs=125.8

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCe
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKS  110 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~  110 (387)
                      ..+..+++.+.++.++++-..++.|..++.+..            ........... ....+++++++..|+ +-...+.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~------------~~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~~~~  102 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG------------EPTTIIRQDLG-SPEGIALDHLGRTIFWTDSQLDR  102 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC------------CCEEEECTTCC-CEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC------------CcEEEEECCCC-CccEEEEEecCCeEEEEECCCCE
Confidence            457899999866777777777889999998765            22222222212 357999999766555 4455678


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      |.+++++.....                                        ............+++.|+++.++++...
T Consensus       103 I~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~  142 (267)
T 1npe_A          103 IEVAKMDGTQRR----------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWN  142 (267)
T ss_dssp             EEEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECC
T ss_pred             EEEEEcCCCCEE----------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECC
Confidence            999987632110                                        0111112356889999976466666544


Q ss_pred             --CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEE
Q 016547          191 --DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  267 (387)
Q Consensus       191 --dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~  267 (387)
                        .+.|..+++.....  .............++++| ++..| ++-...+.|..+|...      ......+.. .....
T Consensus       143 ~~~~~I~~~~~dg~~~--~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g------~~~~~~~~~-~~~P~  212 (267)
T 1npe_A          143 RDNPKIETSHMDGTNR--RILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEG-LQYPF  212 (267)
T ss_dssp             SSSCEEEEEETTSCCC--EEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTE------EEEEEEEEC-CCSEE
T ss_pred             CCCcEEEEEecCCCCc--EEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCC------CceEEEecC-CCCce
Confidence              47888888865431  111212334678999999 65555 5555568999999875      322222222 22335


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .++..  +.+++++....+.|.++|..++
T Consensus       213 gi~~d--~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          213 AVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence            66654  5567777777899999998864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.12  E-value=2.8e-08  Score=83.79  Aligned_cols=201  Identities=13%  Similarity=0.102  Sum_probs=124.5

Q ss_pred             cEEEEEecCCCCcEEEEecC--CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           33 EVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      .-..++++| ++++|.++..  ++.|.++|+.+.            +.+..+....  .  ...+....+.+++.+.||+
T Consensus       138 ~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~------------~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~  200 (386)
T 3sjl_D          138 YPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK------------AFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGS  200 (386)
T ss_dssp             CGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT------------EEEEEEECCS--E--EEEEEEETTEEEEEETTSC
T ss_pred             CCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC------------cEEEEEECCC--c--ceeecCCCceeEEECCCCC
Confidence            455688999 7777766653  689999999998            4444443321  1  1222223456667777888


Q ss_pred             EEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE-EEEEc-cCCCeeEEE
Q 016547          111 VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE-DVTFC-PSSAQEFCS  187 (387)
Q Consensus       111 i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~l~~  187 (387)
                      +.+.++.+ +..... ..                                   ..+.....++. ...|. ++| ++++ 
T Consensus       201 ~~~v~~~~~g~v~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~dG-~~~~-  242 (386)
T 3sjl_D          201 LAKVAFGTEGTPEIT-HT-----------------------------------EVFHPEDEFLINHPAYSQKAG-RLVW-  242 (386)
T ss_dssp             EEEEECCSSSCCEEE-EC-----------------------------------CCCSCTTSCBCSCCEEETTTT-EEEE-
T ss_pred             EEEEECCCCCeEEEe-ec-----------------------------------ceeccccccccccceeEcCCC-cEEE-
Confidence            88888765 221100 00                                   00000011111 13554 566 5444 


Q ss_pred             ecCCCeEEEEEccCCCCceeEEee----------ccCCCeeEEEecCCCCCeEEEeeC----------CCeEEEEEeccC
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEK----------AHDADLHCVDWNPLDDNLILTGSA----------DNSVRMFDRRNL  247 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~  247 (387)
                      .+.+|.|++.|+..........+.          -.......+++++ +++.+.+...          .+.|.++|+.+ 
T Consensus       243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-  320 (386)
T 3sjl_D          243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-  320 (386)
T ss_dssp             EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTT-
T ss_pred             EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCC-
Confidence            455899999999766522222111          0123445678888 7777776543          25799999998 


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCC-eeEEEecCCCeEEEEeCCCC
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ll~s~~~d~~i~vwd~~~~  296 (387)
                           .+.+..+.. ...+.++++++|++ .|+++...++.|.++|..+.
T Consensus       321 -----~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          321 -----GERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             -----CCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             -----CeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence                 888888763 45788999999997 56666677999999999885

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=9.2e-08  Score=81.35  Aligned_cols=169  Identities=17%  Similarity=0.187  Sum_probs=110.7

Q ss_pred             CeEEEEEccCCCeeEEEecCC------CeEEEEEccCCCCceeEEeecc--C-CCeeEEEecCCCCCeEEEee-------
Q 016547          171 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--D-ADLHCVDWNPLDDNLILTGS-------  234 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~~l~~~~-------  234 (387)
                      .-..+...|++  +++++..+      |.|.++|.++.+  .+......  . .--+.+.|+| +++.+++..       
T Consensus       139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHH
T ss_pred             cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccc
Confidence            34567888998  55565544      789999999888  45554422  1 2234688899 888888875       


Q ss_pred             ------------CCCeEEEEEeccCCCCCCCCceEEeccc--cceEEEEEE--cCCCCeeEEEec-----CCCeEEEEeC
Q 016547          235 ------------ADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQW--SPDKSSVFGSSA-----EDGLLNIWDY  293 (387)
Q Consensus       235 ------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~ll~s~~-----~d~~i~vwd~  293 (387)
                                  .+..|.+||+.+      ++.+.++..-  ......+.|  +|++++.++++-     .++.|.+|..
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                        368999999997      6777777642  234456655  999999887777     7889988877


Q ss_pred             CCCCceeccCCCCCCCCce-eeeee-------ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          294 EKVGKKVEQGPRTTNYPAG-LFFQH-------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .. +.........  .+.. ....+       .+-......+.++||+++|.++.-.+       +.|.+||+.+
T Consensus       288 d~-g~~~~~~vId--i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d  352 (462)
T 2ece_A          288 ED-GKWNAEKVIE--IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISN  352 (462)
T ss_dssp             ET-TEEEEEEEEE--ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSS
T ss_pred             cC-CceeEEEEEe--CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecC
Confidence            64 2211000000  0000 00000       00124578999999999999976554       8999999973

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=1.1e-08  Score=90.04  Aligned_cols=153  Identities=14%  Similarity=0.160  Sum_probs=93.8

Q ss_pred             CeEEEEEccC--CCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCC------CCCCCceEEeccc
Q 016547          192 SCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTS------NGVGSPINKFEGH  262 (387)
Q Consensus       192 g~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~~~~~~~~~~~~~  262 (387)
                      +.|.+.|.++  ++. ....+.. .....++.++| +++++++++ .+..|.++|+.+.+.      ......+.++. -
T Consensus       254 ~~V~VID~~~~~~~~-~~~~Ipv-g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v  329 (595)
T 1fwx_A          254 NGVKVVDGRKEASSL-FTRYIPI-ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L  329 (595)
T ss_dssp             TTEEEEECSGGGCCS-SEEEEEE-ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred             CcEEEEeCcccCCce-eEEEEec-CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence            4588999887  431 1233322 34678999999 888777666 578999999996210      00011223333 3


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCC-----eeEEEEccCCCeEE
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK-----VVDFHWNASDPWTV  337 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~  337 (387)
                      ......++|+|+| +++++.-.|+.|.+||+........ ...    ....+..+..|-.+     -.++.++|||++|+
T Consensus       330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~-g~~----~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA-GEK----VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH-TCS----CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc-ccc----cceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            4567899999999 7888899999999999986211000 000    01234444444332     23345789999998


Q ss_pred             EEecCCCCCCCCCce----------EEEEecC
Q 016547          338 VSVSDDCDSTGGGGT----------LQIWRMS  359 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~----------i~iw~~~  359 (387)
                      +++.     ++.|..          -.++|+.
T Consensus       404 ~~Nk-----~skdr~~~~gp~~~~~~ql~dis  430 (595)
T 1fwx_A          404 CLSK-----FSKDRFLNVGPLKPENDQLIDIS  430 (595)
T ss_dssp             EEES-----CCTTSSCCCCSSCCEEEEEEECS
T ss_pred             EcCC-----CCccccccCCCCCCCcceEEEcC
Confidence            8763     333443          2888886

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.05  E-value=5.1e-11  Score=101.75  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=71.2

Q ss_pred             CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEE
Q 016547           98 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  177 (387)
Q Consensus        98 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  177 (387)
                      ++..+++++.||.|..||..+++....                                        +..  +.+.+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------------------------------------~~~--~~~~s~p~   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------------------------------------LKE--DPVLQVPT   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE----------------------------------------EEC--CCSCCCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE----------------------------------------ecC--CCceecce
Confidence            577899999999999999987654322                                        111  22333334


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC-CCee-EEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      ..++ ..+++++.||.|+.||.++++.  ......+. ..+. +..+.  .+..+++++.|+.|+.||.++      ++.
T Consensus        46 ~~~g-~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~  114 (369)
T 2hz6_A           46 HVEE-PAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLT------GEK  114 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred             EcCC-CEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCC------CcE
Confidence            4555 6788888999999999988773  22222111 0110 01111  345677888999999999998      777


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +..+..+.    ...++|++.. +++++.|+.|+.||.+++.
T Consensus       115 ~w~~~~~~----~~~~~p~~~~-v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A          115 QQTLSSAF----ADSLSPSTSL-LYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             -----------------------EEEEEEEEEEECCCSSSSS
T ss_pred             EEEecCCC----cccccccCCE-EEEEecCCEEEEEECCCCC
Confidence            77766543    2345667765 4577889999999998753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.04  E-value=1.3e-07  Score=74.48  Aligned_cols=203  Identities=9%  Similarity=0.044  Sum_probs=123.2

Q ss_pred             EEEeccCCCceEEEEECCCCCEEEEecCCC--eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  157 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (387)
                      .++..........+.|+ ++.+..+.+.+|  .|+++|+++++....                                 
T Consensus        35 ~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~---------------------------------   80 (262)
T 3nol_A           35 HSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ---------------------------------   80 (262)
T ss_dssp             EEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE---------------------------------
T ss_pred             EEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE---------------------------------
Confidence            34433333345688998 666666777666  899999987644322                                 


Q ss_pred             CCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC
Q 016547          158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  237 (387)
Q Consensus       158 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  237 (387)
                             +... .........++++.+++..-.++.+.+||..+.+  .+..+.... .-..++  + ++..|+.+..++
T Consensus        81 -------~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~  146 (262)
T 3nol_A           81 -------IELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYDG-EGWGLT--H-NDQYLIMSDGTP  146 (262)
T ss_dssp             -------EECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC--EEEEEECSS-CCCCEE--E-CSSCEEECCSSS
T ss_pred             -------EecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCc--EEEEEECCC-CceEEe--c-CCCEEEEECCCC
Confidence                   1111 1222222222344666667789999999999888  455554322 223444  4 667777777788


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccc--c---ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                      .|.++|..+      .+.+..+...  .   ..++.+.|. +|+ ++|..-.+..|.+.|..++........... .+..
T Consensus       147 ~i~~iDp~T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L-~~~~  217 (262)
T 3nol_A          147 VLRFLDPES------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGI-LAEA  217 (262)
T ss_dssp             EEEEECTTT------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTG-GGGS
T ss_pred             eEEEEcCCC------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcC-cccc
Confidence            899999998      6777766532  1   235567776 665 787777888999999988543211110000 0000


Q ss_pred             eeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          313 LFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                        .....-....+.++|+|+++.|++++-
T Consensus       218 --~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          218 --GPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             --CSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             --ccccCcCCceEEEEEcCCCCEEEEECC
Confidence              000011236699999999999998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.03  E-value=4.1e-06  Score=70.67  Aligned_cols=238  Identities=6%  Similarity=-0.043  Sum_probs=142.8

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-ecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-GGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-~~~d~  109 (387)
                      .+..+|.+..+ .+.++++ . ...|+..+++..            .....+....  ....++|++.+..|+. -...+
T Consensus        33 ~d~~~C~~~~~-~~~ll~~-~-~~~I~~i~~~g~------------~~~~~~~~~~--~~~~l~~d~~~~~ly~~D~~~~   95 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFA-N-RIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLD   95 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEE-C-BSCEEEECTTSC------------CEEEEECSCS--CEEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCccccccc-CceeEee-c-ccceEEEeCCCC------------eeEEeecCCC--ceEEEEEeccccEEEEEeccCC
Confidence            44456666555 4444444 2 345877777655            2333333333  3569999986665554 44578


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|..++++.....                                        ............+++.+.+++++++-.
T Consensus        96 ~I~r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~  135 (349)
T 3v64_C           96 RILRANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDS  135 (349)
T ss_dssp             EEEEEETTSCSCE----------------------------------------EEECSSCSCCCEEEEETTTTEEEEEET
T ss_pred             ceEEEecCCCCce----------------------------------------EEEeCCCCCccEEEEecCCCeEEEEcC
Confidence            8888887643211                                        111112234567888876657778877


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEe-ccccceEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL  267 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~  267 (387)
                      ..+.|.+.++....  ..............++++|..+.++++-... +.|..+++..       .....+ ...-...+
T Consensus       136 ~~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~Pn  206 (349)
T 3v64_C          136 GTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPN  206 (349)
T ss_dssp             TTTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEESCCSSCSCEE
T ss_pred             CCCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCcc
Confidence            88899999987654  2222333345678999999444455554444 7788887763       333333 22234578


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      .++++|++..|+++-...+.|..+|+......             .+  .........++++.  +..+.++-.      
T Consensus       207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-------------~~--~~~~~~~P~giav~--~~~ly~td~------  263 (349)
T 3v64_C          207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-------------AV--ISQGLPHPFAITVF--EDSLYWTDW------  263 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------------EE--ECSSCSSEEEEEEE--TTEEEEEET------
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-------------EE--EeCCCCCceEEEEE--CCEEEEecC------
Confidence            99999988878888888899999998753211             11  11223455677773  345655433      


Q ss_pred             CCCceEEEEec
Q 016547          348 GGGGTLQIWRM  358 (387)
Q Consensus       348 ~~dg~i~iw~~  358 (387)
                       ..+.|..++.
T Consensus       264 -~~~~V~~~~~  273 (349)
T 3v64_C          264 -HTKSINSANK  273 (349)
T ss_dssp             -TTTEEEEEET
T ss_pred             -CCCeEEEEEc
Confidence             3377777774

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.02  E-value=2.7e-06  Score=72.89  Aligned_cols=235  Identities=6%  Similarity=-0.048  Sum_probs=139.8

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEE
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVL  113 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~v  113 (387)
                      .|.+..+ .+.++++ . ...|+..++...            .....+....  ....++|++.+..|+ +-...+.|..
T Consensus        80 ~C~~~~~-~~~l~~~-~-~~~I~~i~~~~~------------~~~~~~~~~~--~~~gl~~d~~~~~ly~~D~~~~~I~r  142 (386)
T 3v65_B           80 SCKALGP-EPVLLFA-N-RIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLDRILR  142 (386)
T ss_dssp             CEEECSS-CCEEEEE-C-BSCEEEECTTSC------------CCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eECCccc-cceeEee-c-CccceeeccCCC------------cEEEEecCCC--ccEEEEEecCCCeEEEEeCCCCcEEE
Confidence            4444333 3333333 2 346888887765            3333344433  356999997665554 4446788888


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      ++++.....                                        ..+.........+++.+.++.++++-...+.
T Consensus       143 ~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~  182 (386)
T 3v65_B          143 ANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSR  182 (386)
T ss_dssp             EETTSCCEE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred             EecCCCCcE----------------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence            887643210                                        1111112334678888766577778777889


Q ss_pred             EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEE
Q 016547          194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQW  271 (387)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~  271 (387)
                      |.+.++....  ..............++++|..+.++++-... +.|..+++..       .....+ ...-...+.|++
T Consensus       183 I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnGlav  253 (386)
T 3v65_B          183 IEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNGLTI  253 (386)
T ss_dssp             EEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEEE
T ss_pred             EEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCeeeEEE
Confidence            9999887544  2222333345678999998344444444444 6788887763       333333 222345789999


Q ss_pred             cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCc
Q 016547          272 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  351 (387)
Q Consensus       272 ~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg  351 (387)
                      +|++..|+++-+..+.|..+|+......             .+  .........++++.  +..++++-.       ..+
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~-------------~~--~~~~~~~P~giav~--~~~ly~td~-------~~~  309 (386)
T 3v65_B          254 DYAGRRMYWVDAKHHVIERANLDGSHRK-------------AV--ISQGLPHPFAITVF--EDSLYWTDW-------HTK  309 (386)
T ss_dssp             EGGGTEEEEEETTTTEEEEECTTSCSCE-------------EE--ECSSCSSEEEEEEE--TTEEEEEET-------TTT
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCeeE-------------EE--EECCCCCceEEEEE--CCEEEEeeC-------CCC
Confidence            9888878888888899999998753211             11  11223456777773  345665433       337


Q ss_pred             eEEEEecC
Q 016547          352 TLQIWRMS  359 (387)
Q Consensus       352 ~i~iw~~~  359 (387)
                      .|..++..
T Consensus       310 ~V~~~~~~  317 (386)
T 3v65_B          310 SINSANKF  317 (386)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEECC
Confidence            88888743

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=3e-08  Score=91.44  Aligned_cols=277  Identities=13%  Similarity=0.064  Sum_probs=153.9

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC----------ceEEEEECCCCCEEEEecCCCeEEEE
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----------AEFALAMCPTEPYVLSGGKDKSVVLW  114 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------~v~~~~~~~~~~~l~s~~~d~~i~vw  114 (387)
                      ..|.+++.++.|.-+|..+++.            +-.+......          ....+.+  ++..++.++.|+.|..+
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~al  143 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIAL  143 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEE
Confidence            3455666688999999998843            2222221100          0012222  45678888889999999


Q ss_pred             EcCCCcCccccCCC-c-----ccC--CCCCCceeccCCCC----CCCCCCCCCCCCCCCceeecCC--------------
Q 016547          115 SIQDHITSSATDPA-T-----AKS--AGSSGSIIKQSPKP----GDGNDKAADGPSVGPRGIYNGH--------------  168 (387)
Q Consensus       115 d~~~~~~~~~~~~~-~-----~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------  168 (387)
                      |..+++........ .     ...  +......+......    ..+.+..++..+++.+-.+...              
T Consensus       144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~  223 (677)
T 1kb0_A          144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK  223 (677)
T ss_dssp             ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred             ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence            99888655433321 0     000  00001111111111    1233344444444443332211              


Q ss_pred             ------------------CCCeEEEEEccCCCeeEEEecCCC-------------------eEEEEEccCCCCceeEEee
Q 016547          169 ------------------EDTVEDVTFCPSSAQEFCSVGDDS-------------------CLILWDARVGTSPVIKVEK  211 (387)
Q Consensus       169 ------------------~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~  211 (387)
                                        ......+++.|++ .+++.+..++                   .|..+|.++++.  .-.+.
T Consensus       224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~--~W~~~  300 (677)
T 1kb0_A          224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY--KWHYQ  300 (677)
T ss_dssp             HHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEE
T ss_pred             cccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE--EEEEe
Confidence                              1112356788887 5666666553                   599999999883  32222


Q ss_pred             --ccC-------CCeeEEEecCCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc-----------ceE--
Q 016547          212 --AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----------AAV--  266 (387)
Q Consensus       212 --~~~-------~~i~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----------~~i--  266 (387)
                        .|.       ....-+.... ++   ..++.++.+|.++++|.++      ++.+..+....           .++  
T Consensus       301 ~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~t------G~~l~~~~~~~~~~~~~~d~~g~~~~~  373 (677)
T 1kb0_A          301 ETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTN------GKFISAKNFVPVNWASGYDKHGKPIGI  373 (677)
T ss_dssp             SSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT------CCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred             cCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCC------CCEeccccccccCcccccCCCCceeec
Confidence              221       1222233333 55   6899999999999999998      77765553211           111  


Q ss_pred             ----------------------EEEEEcCCCCeeEEEec-----------------------------------------
Q 016547          267 ----------------------LCVQWSPDKSSVFGSSA-----------------------------------------  283 (387)
Q Consensus       267 ----------------------~~~~~~~~~~~ll~s~~-----------------------------------------  283 (387)
                                            ..++++|++..+++...                                         
T Consensus       374 ~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (677)
T 1kb0_A          374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS  453 (677)
T ss_dssp             GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred             cccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence                                  14688888875553221                                         


Q ss_pred             -CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCc
Q 016547          284 -EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  362 (387)
Q Consensus       284 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~  362 (387)
                       ..|.|..||+.+++               .+-... +..++.+..+...+..++        .++.||.+++||..   
T Consensus       454 ~~~g~l~A~D~~tG~---------------~~W~~~-~~~~~~~g~~~~~g~~v~--------~g~~dg~l~a~D~~---  506 (677)
T 1kb0_A          454 KPFGRLLAWDPVAQK---------------AAWSVE-HVSPWNGGTLTTAGNVVF--------QGTADGRLVAYHAA---  506 (677)
T ss_dssp             CCEEEEEEEETTTTE---------------EEEEEE-ESSSCCCCEEEETTTEEE--------EECTTSEEEEEETT---
T ss_pred             CCccEEEEEeCCCCc---------------EEeecC-CCCCCcCcceEeCCCEEE--------EECCCCcEEEEECC---
Confidence             12678888887742               222222 223444555666777776        55667999999999   


Q ss_pred             ccccchhhhhhhc
Q 016547          363 YRPQDEVLAELEK  375 (387)
Q Consensus       363 ~~~~~~~~~~~~~  375 (387)
                         +++.+.++..
T Consensus       507 ---tG~~lw~~~~  516 (677)
T 1kb0_A          507 ---TGEKLWEAPT  516 (677)
T ss_dssp             ---TCCEEEEEEC
T ss_pred             ---CCceeeeeeC
Confidence               7888777653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.98  E-value=8.7e-08  Score=88.54  Aligned_cols=182  Identities=10%  Similarity=0.100  Sum_probs=92.3

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-CCCceEEEEECC---CCCEEEEec-----CCCeEEEE
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCP---TEPYVLSGG-----KDKSVVLW  114 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~v~~~~~~~---~~~~l~s~~-----~d~~i~vw  114 (387)
                      +..|+.++.|+.|..+|.++++            .+-.+... .......+..+|   ++..++..+     .++.|..|
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~------------~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~  188 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQ------------RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAY  188 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC------------EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCC------------EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEE
Confidence            3467788889999999999994            33333221 000000111111   444444322     37899999


Q ss_pred             EcCCCcCccccCCCcc-cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC-
Q 016547          115 SIQDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-  192 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-  192 (387)
                      |.++++.......... ............       ....+..   ..-....++......+++.|++ .+++.+..++ 
T Consensus       189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~-------~~~~~~g---~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~  257 (689)
T 1yiq_A          189 DAETGKEAWRFYTVPGDPKLPPEGKGMEI-------AAKTWFG---DAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGS  257 (689)
T ss_dssp             ETTTCCEEEEEESSCCCTTSCCCSHHHHH-------HHTTCCS---STHHHHCEECCCCSCEEEETTT-TEEEEECCCEE
T ss_pred             ECCCCcEEEEecccCCCcccccccccccc-------cccccCC---ceeeecCCCCccccceeEcCCC-CEEEEeCCCCC
Confidence            9998876544332100 000000000000       0000000   0000000111222356788877 5677777765 


Q ss_pred             ------------------eEEEEEccCCCCceeEEeec--cC-------CCeeEEEecCCCCC---eEEEeeCCCeEEEE
Q 016547          193 ------------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMF  242 (387)
Q Consensus       193 ------------------~i~iwd~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~~---~l~~~~~dg~i~~~  242 (387)
                                        .|..+|.++++  ..-.+..  |.       ..+....... ++.   .++.++.+|.++++
T Consensus       258 ~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          258 LWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             SSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEE
T ss_pred             ccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEE
Confidence                              39999999998  3333322  21       1122222222 444   78899999999999


Q ss_pred             EeccCCCCCCCCceE
Q 016547          243 DRRNLTSNGVGSPIN  257 (387)
Q Consensus       243 d~~~~~~~~~~~~~~  257 (387)
                      |.++      ++.+.
T Consensus       335 D~~t------G~~l~  343 (689)
T 1yiq_A          335 DRAT------GELLS  343 (689)
T ss_dssp             ETTT------CCEEE
T ss_pred             ECCC------CCEec
Confidence            9988      66653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.97  E-value=1.7e-06  Score=72.40  Aligned_cols=239  Identities=9%  Similarity=-0.045  Sum_probs=136.8

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec--------------------cCCCceE
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG--------------------HQDNAEF   91 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------h~~~~v~   91 (387)
                      ....++++.+ +++++.++..++.|..|+..+..             ...+..                    ... ...
T Consensus        19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~p~   83 (322)
T 2fp8_A           19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSG-------------FVDFAYASPYWNKAFCENSTDAEKRPLCG-RTY   83 (322)
T ss_dssp             SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTC-------------EEEEEESCTTCCHHHHTTCCCGGGHHHHC-CEE
T ss_pred             CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCc-------------eEEEecccccccccccccccchhccccCC-CCc
Confidence            4467788888 67877788888999999887652             111110                    011 357


Q ss_pred             EEEECC-CCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCC
Q 016547           92 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHE  169 (387)
Q Consensus        92 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  169 (387)
                      .+++.+ +++ |+.+...+.|..+|..++......                                     .... ...
T Consensus        84 gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~-------------------------------------~~~~~~~~  125 (322)
T 2fp8_A           84 DISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLA-------------------------------------TSVDGVPF  125 (322)
T ss_dssp             EEEEETTTTE-EEEEETTTEEEEECTTCEECEEEE-------------------------------------SEETTEEC
T ss_pred             eEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEec-------------------------------------ccCCCCcc
Confidence            899997 555 444444455777776543211000                                     0000 011


Q ss_pred             CCeEEEEEcc-CCCeeEEEecC-----------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE
Q 016547          170 DTVEDVTFCP-SSAQEFCSVGD-----------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  231 (387)
Q Consensus       170 ~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  231 (387)
                      .....+++.+ +| +++++-..                 ++.|..+|..+++   .............++++| +++.|.
T Consensus       126 ~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~p~gia~~~-dg~~ly  200 (322)
T 2fp8_A          126 KWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE---TTLLLKELHVPGGAEVSA-DSSFVL  200 (322)
T ss_dssp             SCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE---EEEEEEEESCCCEEEECT-TSSEEE
T ss_pred             cccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE---EEEeccCCccCcceEECC-CCCEEE
Confidence            3467899999 87 65655432                 3678888876655   122222223457899999 887655


Q ss_pred             Ee-eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecC----------CCeEEEEeCCCCCcee
Q 016547          232 TG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKV  300 (387)
Q Consensus       232 ~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~----------d~~i~vwd~~~~~~~~  300 (387)
                      ++ +..+.|..|++.....   + ....+....+ ...+++.++|. ++++...          .+.|..+|...  +. 
T Consensus       201 v~d~~~~~I~~~~~~~~~~---~-~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G--~~-  271 (322)
T 2fp8_A          201 VAEFLSHQIVKYWLEGPKK---G-TAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG--NI-  271 (322)
T ss_dssp             EEEGGGTEEEEEESSSTTT---T-CEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS--CE-
T ss_pred             EEeCCCCeEEEEECCCCcC---C-ccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC--CE-
Confidence            55 5568999999874210   1 1111211223 67899999998 4545433          45677777542  21 


Q ss_pred             ccCCCCCCCCceeeeeeccC----CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          301 EQGPRTTNYPAGLFFQHAGH----RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                                   +..+...    ...++.+++.  +..|.++       ...++.|..+++.
T Consensus       272 -------------~~~~~~~~g~~~~~~~~~~~~--~g~L~v~-------~~~~~~i~~~~~~  312 (322)
T 2fp8_A          272 -------------LEVIPLPPPFAGEHFEQIQEH--DGLLYIG-------TLFHGSVGILVYD  312 (322)
T ss_dssp             -------------EEEEECCTTTTTSCCCEEEEE--TTEEEEE-------CSSCSEEEEEEC-
T ss_pred             -------------EEEEECCCCCccccceEEEEe--CCEEEEe-------ecCCCceEEEecc
Confidence                         2222211    2346667663  3456653       3445899999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.93  E-value=5.3e-07  Score=71.03  Aligned_cols=192  Identities=12%  Similarity=0.144  Sum_probs=122.2

Q ss_pred             eeeeeeecCCCcE--EEEEecCCCCcEEEEecCCC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           22 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        22 ~~~~~~~~h~~~v--~~i~~~~~~~~~l~t~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      .+..+.+.|...-  ..+.|+  ++.++.+.+.+|  .|+++|++++            +.+..+.....  .......+
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tg------------kv~~~~~l~~~--~FgeGit~   94 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESG------------KTLQQIELGKR--YFGEGISD   94 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTC------------CEEEEEECCTT--CCEEEEEE
T ss_pred             eEEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCC------------cEEEEEecCCc--cceeEEEE
Confidence            4566677887655  788887  457777777766  8999999999            44444443332  22322233


Q ss_pred             CCCEEEE-ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 TEPYVLS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 ~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      +++.|.. .-.++.+.++|.++....                                        ..+....   ....
T Consensus        95 ~g~~ly~ltw~~~~v~v~D~~t~~~~----------------------------------------~ti~~~~---eG~g  131 (262)
T 3nol_A           95 WKDKIVGLTWKNGLGFVWNIRNLRQV----------------------------------------RSFNYDG---EGWG  131 (262)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTCCEE----------------------------------------EEEECSS---CCCC
T ss_pred             eCCEEEEEEeeCCEEEEEECccCcEE----------------------------------------EEEECCC---CceE
Confidence            4455444 345889999999865432                                        2222111   1123


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                      +++++ ..|+.+..++.|.++|..+.+  ....+.-  ..   ..++.+.|.  ++..++..-.++.|.+.|..+     
T Consensus       132 lt~dg-~~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t-----  201 (262)
T 3nol_A          132 LTHND-QYLIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET-----  201 (262)
T ss_dssp             EEECS-SCEEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT-----
T ss_pred             EecCC-CEEEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC-----
Confidence            33566 445555557889999999877  3333322  22   334557775  566666665788999999998     


Q ss_pred             CCCceEEeccc------------cceEEEEEEcCCCCeeEEEec
Q 016547          252 VGSPINKFEGH------------SAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       252 ~~~~~~~~~~~------------~~~i~~~~~~~~~~~ll~s~~  283 (387)
                       ++.+..+...            ....+.|||+|+++.++++|-
T Consensus       202 -G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          202 -GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             7777766431            235789999999998888874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.92  E-value=1.4e-05  Score=66.46  Aligned_cols=224  Identities=4%  Similarity=-0.071  Sum_probs=133.8

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKS  132 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  132 (387)
                      ..|+..|+++.            .....+..-.  ....++|++.+..|+ +-..++.|..+++......          
T Consensus        10 ~~I~~i~~~~~------------~~~~~~~~~~--~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----------   65 (316)
T 1ijq_A           10 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----------   65 (316)
T ss_dssp             SSEEEEETTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred             CeEEEEECCCc------------ceEehhcCCC--ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----------
Confidence            46888888876            3333333333  356999998766554 4455688999988641000          


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547          133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  212 (387)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  212 (387)
                                                ......+.........+++.+.+++++++-...+.|.+.|+....  .......
T Consensus        66 --------------------------~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~  117 (316)
T 1ijq_A           66 --------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE  117 (316)
T ss_dssp             ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred             --------------------------cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEEEC
Confidence                                      000011111223457888887554777777788999999987544  2222223


Q ss_pred             cCCCeeEEEecCCCCCeEEEeeC-C-CeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547          213 HDADLHCVDWNPLDDNLILTGSA-D-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLN  289 (387)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~  289 (387)
                      .......++++| .+..|..+.. . +.|..+++.       +.....+. ..-...+.+++++++..|+++-+..+.|.
T Consensus       118 ~~~~P~~iavdp-~~g~ly~~d~~~~~~I~~~~~d-------G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          118 NGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLN-------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             TTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETT-------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCcceEEeCC-CCCEEEEEccCCCCeEEEEcCC-------CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            345678999998 5554444443 3 678888775       33333332 22345789999998888888888888999


Q ss_pred             EEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+|+.....             ..+...........++++.  +..++++-.       ..+.|..++..
T Consensus       190 ~~d~dg~~~-------------~~~~~~~~~~~~P~giav~--~~~ly~~d~-------~~~~V~~~~~~  237 (316)
T 1ijq_A          190 SIDVNGGNR-------------KTILEDEKRLAHPFSLAVF--EDKVFWTDI-------INEAIFSANRL  237 (316)
T ss_dssp             EEETTSCSC-------------EEEEECTTTTSSEEEEEEE--TTEEEEEET-------TTTEEEEEETT
T ss_pred             EEecCCCce-------------EEEeecCCccCCcEEEEEE--CCEEEEEEC-------CCCeEEEEeCC
Confidence            999875221             1122211222345677774  356666443       33788888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.91  E-value=4.5e-06  Score=66.17  Aligned_cols=208  Identities=8%  Similarity=0.099  Sum_probs=129.5

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE--eccCCCceEEEEECCCCCEEEEec
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      +-.+.+..++|.|+++.++++...++.|...|.. +            +....+  .+..+  ...|++.+++.++++.-
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g------------~v~~~i~l~g~~D--~EGIa~~~~g~~~vs~E   88 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G------------DLIRTIPLDFVKD--LETIEYIGDNQFVISDE   88 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C------------CEEEEEECSSCSS--EEEEEECSTTEEEEEET
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C------------CEEEEEecCCCCC--hHHeEEeCCCEEEEEEC
Confidence            4557899999999666777778889999999987 5            333333  33333  56899999998878776


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      .++.+.++++............                             .. ... ..........++|.|.+..+++
T Consensus        89 ~~~~l~~~~v~~~~~i~~~~~~-----------------------------~~-~~~-~~~~N~g~EGLA~d~~~~~L~v  137 (255)
T 3qqz_A           89 RDYAIYVISLTPNSEVKILKKI-----------------------------KI-PLQ-ESPTNCGFEGLAYSRQDHTFWF  137 (255)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEE-----------------------------EC-CCS-SCCCSSCCEEEEEETTTTEEEE
T ss_pred             CCCcEEEEEcCCCCeeeeeeee-----------------------------cc-ccc-cccccCCcceEEEeCCCCEEEE
Confidence            7889999988653211000000                             00 000 0123455789999999855555


Q ss_pred             EecCCCeEEEEEccCC-CCceeEEe-------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          187 SVGDDSCLILWDARVG-TSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~-~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                       +.......+|.++.. ........       ..+...+.+++++|..+.+++.....+.+..+|..       ++.+..
T Consensus       138 -a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-------g~~~~~  209 (255)
T 3qqz_A          138 -FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-------GEVIGE  209 (255)
T ss_dssp             -EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-------CCEEEE
T ss_pred             -EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-------CCEEEE
Confidence             444434445444311 00011111       11234578999999777888888888899999977       454444


Q ss_pred             ecccc---------ceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          259 FEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       259 ~~~~~---------~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                      +.-..         .....|+|.++|. |+++ ++.+.+++|.
T Consensus       210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEE
T ss_pred             EEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEE
Confidence            43211         2568999999997 6655 5566666554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=1.8e-06  Score=67.43  Aligned_cols=206  Identities=8%  Similarity=-0.030  Sum_probs=123.2

Q ss_pred             CeEEEeccCCCceEEEEECCCCCEEEEecCC--CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCC
Q 016547           78 PDLILTGHQDNAEFALAMCPTEPYVLSGGKD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  155 (387)
Q Consensus        78 ~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (387)
                      .+..+..........+.|+. +.+..+.+.+  ..|+.+|+++++......                             
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-----------------------------   60 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-----------------------------   60 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-----------------------------
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-----------------------------
Confidence            34445333334566899986 5555666655  489999998764432211                             


Q ss_pred             CCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          156 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                               +..+ ..--.++..  ++.++...-.++.+.+||..+.+  .+..+... ..-..++  + ++..|+++..
T Consensus        61 ---------l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~-~~Gwglt--~-dg~~L~vSdg  122 (243)
T 3mbr_X           61 ---------VPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP-GEGWALT--S-DDSHLYMSDG  122 (243)
T ss_dssp             ---------CCTT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS-SCCCEEE--E-CSSCEEEECS
T ss_pred             ---------CCCC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC-CCceEEe--e-CCCEEEEECC
Confidence                     1111 111233433  44677777789999999999887  45555432 2224444  4 5666777777


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEecccc-----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  310 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  310 (387)
                      ++.|.++|..+      .+.+.++.-..     ..++.+.+. +|+ ++|....+..|.+.|..++........... .+
T Consensus       123 s~~l~~iDp~t------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l-~~  193 (243)
T 3mbr_X          123 TAVIRKLDPDT------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQAL-VP  193 (243)
T ss_dssp             SSEEEEECTTT------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGG-ST
T ss_pred             CCeEEEEeCCC------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcC-cc
Confidence            89999999998      67777665322     245667765 555 777777788999999988543211110000 00


Q ss_pred             ceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          311 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      .. ...........+.++++|+++.|++++-
T Consensus       194 ~~-~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          194 DA-DALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TT-TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cc-ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            00 0000012246799999999999998764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=1.7e-06  Score=68.25  Aligned_cols=190  Identities=5%  Similarity=-0.031  Sum_probs=120.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ....+.|+ ++.+..+.+.+|.|+++|+++++.....                                       +.. 
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------------------------------------l~~-   94 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---------------------------------------RLG-   94 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---------------------------------------ECT-
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---------------------------------------CCC-
Confidence            35688887 4566677788899999999876543211                                       111 


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      ...--.+++  +++.+++..-.++.+.+||..+.+  .+..+... ..-..++  + ++..|+.+..++.|.++|..+  
T Consensus        95 ~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~-~eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T--  164 (268)
T 3nok_A           95 NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ--RERTTRYS-GEGWGLC--Y-WNGKLVRSDGGTMLTFHEPDG--  164 (268)
T ss_dssp             TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--EEEEEECS-SCCCCEE--E-ETTEEEEECSSSEEEEECTTT--
T ss_pred             CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--EEEEEeCC-CceeEEe--c-CCCEEEEECCCCEEEEEcCCC--
Confidence            111123444  344666677789999999999887  45555432 2234555  4 567777777799999999998  


Q ss_pred             CCCCCCceEEecccc-----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee----ecc
Q 016547          249 SNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----HAG  319 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~  319 (387)
                          .+.+.++....     ..++.+.|. +|+ ++|....+..|.+.|..++..........      +...    ...
T Consensus       165 ----~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~------L~~~~~~~~~~  232 (268)
T 3nok_A          165 ----FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASA------LTRAVAGQVTN  232 (268)
T ss_dssp             ----CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHH------HHHHHTTTCCC
T ss_pred             ----CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCC------CcccccccccC
Confidence                67777665322     235677776 664 78777778899999998853321100000      0000    011


Q ss_pred             CCCCeeEEEEccCCCeEEEEec
Q 016547          320 HRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      -....+.+||+|+++.|++++-
T Consensus       233 ~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          233 PEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCCEEEEEECTTTCCEEEEET
T ss_pred             cCCceEEEEEcCCCCEEEEeCC
Confidence            2246799999999999998654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.88  E-value=5.6e-07  Score=75.48  Aligned_cols=151  Identities=9%  Similarity=-0.029  Sum_probs=92.9

Q ss_pred             cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          166 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      ......+.++...+++ . +..++  +.|..+| .+++  ...........+.++...+ ++ .+.+++.++.|..+|. 
T Consensus       173 ~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-  242 (330)
T 3hxj_A          173 KTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT--EKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-  242 (330)
T ss_dssp             ECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC--EEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-
T ss_pred             ecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc--EEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-
Confidence            3334456666776666 4 44444  8899999 5555  3334444456688888877 55 4566677888888874 


Q ss_pred             cCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          246 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      +      +..+..+......+..+.+.+++. ++ .++.+|.|..+|. +. +.              ...+......+.
T Consensus       243 ~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g-~~--------------~~~~~~~~~~~~  298 (330)
T 3hxj_A          243 D------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DG-TE--------------KWNFETGSWIIA  298 (330)
T ss_dssp             T------SCEEEEEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TS-CE--------------EEEEECSSCCCS
T ss_pred             C------CCEeEEeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CC-cE--------------EEEEEcCCcccc
Confidence            3      555555554444444566666675 44 6777888999985 32 21              222222345567


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++...+++. +.        .|+.+|.+++....
T Consensus       299 ~~~~d~~g~-l~--------~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          299 TPVIDENGT-IY--------FGTRNGKFYALFNL  323 (330)
T ss_dssp             CCEECTTCC-EE--------EECTTSCEEEEEC-
T ss_pred             ceEEcCCCE-EE--------EEcCCCeEEEEecc
Confidence            777777766 44        35566999988877

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=8.5e-07  Score=69.88  Aligned_cols=191  Identities=7%  Similarity=0.015  Sum_probs=121.4

Q ss_pred             eeeeeecCCCcE--EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC
Q 016547           23 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  100 (387)
Q Consensus        23 ~~~~~~~h~~~v--~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~  100 (387)
                      +....+.|...-  ..+.|.  ++.+..+.+.+|.|+++|++++            +.+..+ -.....-..+++..+ +
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tg------------kv~~~~-l~~~~FgeGit~~g~-~  107 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESA------------QPVWME-RLGNIFAEGLASDGE-R  107 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCS------------SCSEEE-ECTTCCEEEEEECSS-C
T ss_pred             EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCC------------cEEeEE-CCCCcceeEEEEeCC-E
Confidence            445666776554  688876  4678888888999999999999            444444 222111123555432 3


Q ss_pred             EEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccC
Q 016547          101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       101 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      ..+..-.++.+.++|.++.+...                                        .+... ..-..++  ++
T Consensus       108 Ly~ltw~~~~v~V~D~~Tl~~~~----------------------------------------ti~~~-~eGwGLt--~D  144 (268)
T 3nok_A          108 LYQLTWTEGLLFTWSGMPPQRER----------------------------------------TTRYS-GEGWGLC--YW  144 (268)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEE----------------------------------------EEECS-SCCCCEE--EE
T ss_pred             EEEEEccCCEEEEEECCcCcEEE----------------------------------------EEeCC-CceeEEe--cC
Confidence            33344568999999998654332                                        22211 1123344  45


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEee--ccCC---CeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~---~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      +.. |+.+..++.|.++|..+.+  ....+.  .+..   .++.+.|.  ++.+++..-.++.|.+.|..+      ++.
T Consensus       145 g~~-L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------G~V  213 (268)
T 3nok_A          145 NGK-LVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------GTV  213 (268)
T ss_dssp             TTE-EEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------CBE
T ss_pred             CCE-EEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------CcE
Confidence            634 4444568899999999877  333332  2222   34667776  566666555688999999998      777


Q ss_pred             eEEeccc-------------cceEEEEEEcCCCCeeEEEec
Q 016547          256 INKFEGH-------------SAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       256 ~~~~~~~-------------~~~i~~~~~~~~~~~ll~s~~  283 (387)
                      +..+...             ....+.||++|+++.||++|-
T Consensus       214 ~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          214 VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            7766522             136789999999888888874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.86  E-value=2.6e-08  Score=83.65  Aligned_cols=249  Identities=12%  Similarity=0.071  Sum_probs=134.9

Q ss_pred             EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcccc
Q 016547           46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT  125 (387)
Q Consensus        46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  125 (387)
                      .|..++.++.|..|| .+++            .......+. ..+.++...+++. |..++.+  |..+|. ++......
T Consensus        32 ~l~v~t~~~~l~~~d-~~g~------------~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           32 TIYLGSSNKNLYAIN-TDGS------------VKWFFKSGE-IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CEECSSTTTTTEEEC-TTSC------------EEESSCGGG-EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred             eEEEEcCCCEEEEEC-CCCc------------EEEEEecCC-CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence            466677788899999 6662            222222222 2456677776665 4445544  888885 44332222


Q ss_pred             CCCcccCCC---CCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCC
Q 016547          126 DPATAKSAG---SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  202 (387)
Q Consensus       126 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  202 (387)
                      .........   ....+.. .  ...+.+..++.. .+...........+.++...+++ . +..++.++.|..+|.. +
T Consensus        94 ~~~~~~~~~~~~~~~~l~v-~--t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g  166 (330)
T 3hxj_A           94 DTKKAIVSDFTIFEDILYV-T--SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-G  166 (330)
T ss_dssp             CC-----CCEEEETTEEEE-E--CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-S
T ss_pred             ECCCCcccCceEECCEEEE-E--ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-C
Confidence            211110000   0111111 1  111222223333 33333333344445666666666 3 6667788999999988 5


Q ss_pred             CCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEe
Q 016547          203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS  282 (387)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~  282 (387)
                      +  ...........+.++...+ ++.+++ ++  +.|..+| .+      ++.+..+......+.++...+++. ++ .+
T Consensus       167 ~--~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~  231 (330)
T 3hxj_A          167 T--EKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VT  231 (330)
T ss_dssp             C--EEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EE
T ss_pred             C--EeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EE
Confidence            5  3334444455677777776 666554 44  7788999 55      666666665556688888888886 44 56


Q ss_pred             cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          283 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       283 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +.++.|..+|... ..               +.........+..+...+++. +.        .++.+|.|..+|..
T Consensus       232 t~~~gl~~~~~~g-~~---------------~~~~~~~~~~~~~~~~~~~g~-l~--------v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          232 SLDGHLYAINPDG-TE---------------KWRFKTGKRIESSPVIGNTDT-IY--------FGSYDGHLYAINPD  283 (330)
T ss_dssp             ETTTEEEEECTTS-CE---------------EEEEECSSCCCSCCEECTTSC-EE--------EECTTCEEEEECTT
T ss_pred             cCCCeEEEECCCC-CE---------------eEEeeCCCCccccceEcCCCe-EE--------EecCCCCEEEECCC
Confidence            6678888887432 11               222222233344455555554 44        33445778888753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.85  E-value=2.7e-06  Score=66.42  Aligned_cols=193  Identities=9%  Similarity=0.084  Sum_probs=120.9

Q ss_pred             eeeeeeecCCCc--EEEEEecCCCCcEEEEecCC--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           22 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTDS--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        22 ~~~~~~~~h~~~--v~~i~~~~~~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      .+....+.|...  ...+.|..  +.+..+.+.+  ..|+.+|++++            +.+..........--.+++. 
T Consensus         9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tg------------kv~~~~~l~~~~fgeGi~~~-   73 (243)
T 3mbr_X            9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETG------------RILQRAEVPPPYFGAGIVAW-   73 (243)
T ss_dssp             EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEE-
T ss_pred             eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCC------------CEEEEEeCCCCcceeEEEEe-
Confidence            345666688654  55899876  4666666665  48999999999            44444443332111234443 


Q ss_pred             CCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 TEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 ~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                       ++.| +..-.++.+.++|.++....                                        ..+.... .-..++
T Consensus        74 -~~~ly~ltw~~~~v~v~D~~tl~~~----------------------------------------~ti~~~~-~Gwglt  111 (243)
T 3mbr_X           74 -RDRLIQLTWRNHEGFVYDLATLTPR----------------------------------------ARFRYPG-EGWALT  111 (243)
T ss_dssp             -TTEEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEECSS-CCCEEE
T ss_pred             -CCEEEEEEeeCCEEEEEECCcCcEE----------------------------------------EEEeCCC-CceEEe
Confidence             4444 34456899999999865432                                        2222111 123444


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEee--ccC---CCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  251 (387)
                        +++..++++ ..++.|.++|..+.+  ....+.  .+.   ..++.+.+.  ++..++..-.+..|.+.|.++     
T Consensus       112 --~dg~~L~vS-dgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t-----  179 (243)
T 3mbr_X          112 --SDDSHLYMS-DGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS-----  179 (243)
T ss_dssp             --ECSSCEEEE-CSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT-----
T ss_pred             --eCCCEEEEE-CCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC-----
Confidence              566344444 558899999999877  333332  222   244566665  566666655688999999998     


Q ss_pred             CCCceEEeccc-------------cceEEEEEEcCCCCeeEEEecC
Q 016547          252 VGSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSAE  284 (387)
Q Consensus       252 ~~~~~~~~~~~-------------~~~i~~~~~~~~~~~ll~s~~~  284 (387)
                       ++.+..+...             ....+.|+++|+++.||++|-.
T Consensus       180 -G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          180 -GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             -CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             -CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence             7777666421             2367899999999888988853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=1.5e-07  Score=79.45  Aligned_cols=267  Identities=9%  Similarity=-0.069  Sum_probs=142.8

Q ss_pred             CcEEEEecCCC----cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----------CCC
Q 016547           44 TKIVATHTDSP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDK  109 (387)
Q Consensus        44 ~~~l~t~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----------~d~  109 (387)
                      .+.+++...++    +|.+.|..+.            +.+..+..-.. +  .+.++||+++++++.          .++
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~------------~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~   96 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCG------------VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTT------------EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             CeEEEECCccCCccceEEEEECCCC------------eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCC
Confidence            34555555455    8889999998            56666655544 4  799999999988875          468


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.+||+.+.+.........                              .. ....  ......+.++||| ++++++.
T Consensus        97 ~VsviD~~T~~vv~~I~v~~------------------------------~~-~~~~--g~~P~~ia~SpDG-k~lyVan  142 (368)
T 1mda_H           97 YVEVFDPVTFLPIADIELPD------------------------------AP-RFSV--GPRVHIIGNCASS-ACLLFFL  142 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETT------------------------------SC-SCCB--SCCTTSEEECTTS-SCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCC------------------------------cc-cccc--CCCcceEEEcCCC-CEEEEEc
Confidence            99999998754332211000                              00 0000  0234578999999 5566654


Q ss_pred             C--CCeEEE--EEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce----EEecc
Q 016547          190 D--DSCLIL--WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI----NKFEG  261 (387)
Q Consensus       190 ~--dg~i~i--wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~  261 (387)
                      .  +..+.+  +|+.+     ...+.. ...   ..+.|.....+++.+.||.+.+.|+.+..... ++..    ..+..
T Consensus       143 ~~~~~~v~V~~iD~~t-----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~-~~v~~~~t~~i~v  212 (368)
T 1mda_H          143 FGSSAAAGLSVPGASD-----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA-GIVGAQCTGAQNC  212 (368)
T ss_dssp             CSSSCEEEEEETTTEE-----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC-EECCCCSCTTSCB
T ss_pred             cCCCCeEEEEEEchhh-----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccC-CeEEEEeeeeeeC
Confidence            3  467888  99876     122211 111   12334234556667788888888887500000 1111    01111


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      -..+.   + .+++..++.+. . +.+.+.|+........... ..........  .........++++|++++++++..
T Consensus       213 g~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~-~~~~~~~~~~--~~~p~g~~~v~~s~dg~~lyV~~~  283 (368)
T 1mda_H          213 SSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGATMKAAI-DGNESGRKAD--NFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             CSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCEEECCC-CSSCTHHHHT--TEEECSSSCEEEETTTTEEEEEEE
T ss_pred             CCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcceEEEEE-Eecccccccc--ccccCcceeeEEcCCCCEEEEEec
Confidence            12333   3 55555544343 4 8999999865321111000 0000000000  000111222689999999887643


Q ss_pred             ---CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 ---DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ---~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                         ..+ .+. ++.+.++|+.      +.+.+.++.... ....++|+|
T Consensus       284 ~~~~~~-~~~-~~~~~ViD~~------t~~vv~~i~vg~-~p~gi~~s~  323 (368)
T 1mda_H          284 EHSRSC-LAA-AENTSSVTAS------VGQTSGPISNGH-DSDAIIAAQ  323 (368)
T ss_dssp             ECSSCT-TSC-EEEEEEEESS------SCCEEECCEEEE-EECEEEECC
T ss_pred             cccCcc-ccc-CCCEEEEECC------CCeEEEEEECCC-CcceEEECC
Confidence               100 000 2345599999      677777776433 567777765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.82  E-value=3.2e-05  Score=64.03  Aligned_cols=242  Identities=9%  Similarity=0.030  Sum_probs=136.6

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .+....+.-......++|.+ +++++++-..++.|..||.+..             ....+.. . .....+++.++|++
T Consensus        22 ~~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-------------~~~~~~~-~-~~p~gia~~~dG~l   85 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-------------QQIHATV-E-GKVSGLAFTSNGDL   85 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-------------EEEEEEC-S-SEEEEEEECTTSCE
T ss_pred             ceEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-------------eEEEEeC-C-CCceeEEEcCCCcE
Confidence            33444454446788999999 7888888778899999987654             1112221 1 24679999999996


Q ss_pred             EEEecCC-C-eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          102 VLSGGKD-K-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       102 l~s~~~d-~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      +++.... + .|..++..++.....                                      ... ........++..+
T Consensus        86 ~vad~~~~~~~v~~~d~~~g~~~~~--------------------------------------~~~-~~~~~~~g~~~~~  126 (306)
T 2p4o_A           86 VATGWNADSIPVVSLVKSDGTVETL--------------------------------------LTL-PDAIFLNGITPLS  126 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEE--------------------------------------EEC-TTCSCEEEEEESS
T ss_pred             EEEeccCCcceEEEEcCCCCeEEEE--------------------------------------EeC-CCccccCcccccC
Confidence            6654332 2 455566544321100                                      000 0111233444445


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCceeEE--------eeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCC
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPVIKV--------EKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~  250 (387)
                      .+ ..+++-..++.|..+|...++......        ....-...+.+  +| +++.| ++-...+.|..||+..... 
T Consensus       127 ~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~-  201 (306)
T 2p4o_A          127 DT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDK-  201 (306)
T ss_dssp             SS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSC-
T ss_pred             CC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCC-
Confidence            44 556666568889998876532101100        00111234555  77 66554 4455578999999874100 


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  330 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  330 (387)
                        ......+.. ......+++.++|. ++++....+.|.++|...  +.            ..+..........++++|.
T Consensus       202 --~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G--~~------------~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          202 --PGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--ST------------TIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             --BCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--CE------------EEEECGGGTCTTEEEEEEC
T ss_pred             --CCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC--CE------------EEEeecccccCCceEEEEe
Confidence              111111111 12346789999997 566766778899998652  11            0111122223568999998


Q ss_pred             ---cCCCeEEEEec
Q 016547          331 ---ASDPWTVVSVS  341 (387)
Q Consensus       331 ---~~~~~l~~s~s  341 (387)
                         |+++.|+++.+
T Consensus       264 g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          264 QTEGDCTAIYVVTN  277 (306)
T ss_dssp             CSTTTTTEEEEEEC
T ss_pred             cccCCCCEEEEECC
Confidence               88888887764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.82  E-value=9.9e-07  Score=77.85  Aligned_cols=202  Identities=10%  Similarity=0.046  Sum_probs=123.7

Q ss_pred             CCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547           97 PTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus        97 ~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      +||+++..+. .+++|.+.|+.+.+.....                                      .+. .......+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii--------------------------------------~ip-~g~~phg~  139 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL--------------------------------------EIP-NAKGIHGL  139 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE--------------------------------------ECS-SCCSEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEE--------------------------------------eCC-CCCCCcce
Confidence            3788876655 4567999999865432100                                      111 12346677


Q ss_pred             EE-c-cCCCeeEEEe------------------cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC
Q 016547          176 TF-C-PSSAQEFCSV------------------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       176 ~~-~-~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                      ++ . |+++ +++++                  -.++.+.+.|..+.+  ......-.. ....++++| +++++++.+.
T Consensus       140 ~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~  214 (595)
T 1fwx_A          140 RPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADY-EGKWAFSTSY  214 (595)
T ss_dssp             EECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECS-SSSEEEEEES
T ss_pred             eeeecCCCc-EEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECC-CCCEEEEEec
Confidence            77 4 7874 44444                  235689999998776  344433222 567888999 8888888885


Q ss_pred             CC--------------------------------------eEEEEEeccCCCCCCCCc-eEEeccccceEEEEEEcCCCC
Q 016547          236 DN--------------------------------------SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKS  276 (387)
Q Consensus       236 dg--------------------------------------~i~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~  276 (387)
                      +.                                      .|.+.|.++..    ++. +..+.. .....++.++|||+
T Consensus       215 ~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~sPDGk  289 (595)
T 1fwx_A          215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMAPDKK  289 (595)
T ss_dssp             CTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEE-ESSCCCEEECTTSS
T ss_pred             CcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEec-CCCceEEEEcCCCC
Confidence            53                                      24444444310    112 233331 23456799999999


Q ss_pred             eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          277 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       277 ~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      ++++++..+..|.++|+.+........   ........... .-......++|+|+| ++.++...|       +.|.+|
T Consensus       290 ~v~V~~~~s~~VsVid~~~~~~~~~~~---l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ld-------sqV~kw  357 (595)
T 1fwx_A          290 HLCVAGKLSPTVTVLDVTRFDAVFYEN---ADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLD-------SQVVKW  357 (595)
T ss_dssp             EEEEECTTSSBEEEEEGGGHHHHHHSC---CCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTT-------TEEEEE
T ss_pred             EEEEeCCCCCeEEEEECcccccccccc---cCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecC-------CcEEEE
Confidence            999999999999999999642110000   00000112222 223467899999999 777655544       999999


Q ss_pred             ecC
Q 016547          357 RMS  359 (387)
Q Consensus       357 ~~~  359 (387)
                      |+.
T Consensus       358 di~  360 (595)
T 1fwx_A          358 NIE  360 (595)
T ss_dssp             EHH
T ss_pred             Ehh
Confidence            998

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.80  E-value=5e-05  Score=65.34  Aligned_cols=231  Identities=3%  Similarity=-0.075  Sum_probs=138.2

Q ss_pred             EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe-cCCCeEEEEEcCCCcCccc
Q 016547           46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~  124 (387)
                      +|+.+. ...|+..+++..            ..........  .+..++|++.+..|..+ ...+.|..+++......  
T Consensus        85 ~ll~~~-~~~I~~i~l~~~------------~~~~~~~~~~--~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--  147 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--  147 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSC------------SCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred             eeEEec-cceeEEEccCCc------------ceeEeccccC--cceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--
Confidence            344333 357888888766            3333333333  35799999866655544 45678888887642100  


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                                                        ................+++.+.+++++++-...+.|.+.+++... 
T Consensus       148 ----------------------------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-  192 (400)
T 3p5b_L          148 ----------------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-  192 (400)
T ss_dssp             ----------------------------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-
T ss_pred             ----------------------------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-
Confidence                                              000122222344677889987555778887888999999987654 


Q ss_pred             ceeEEeeccCCCeeEEEecCCCCCeEEEee-C-CCeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEE
Q 016547          205 PVIKVEKAHDADLHCVDWNPLDDNLILTGS-A-DNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                       ..............|+++| .+..|.... . .+.|...++..       .....+ ...-...+.|++++++..|+++
T Consensus       193 -~~~l~~~~~~~P~~iavdp-~~g~ly~td~~~~~~I~~~~~dG-------~~~~~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          193 -RKTLFRENGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             -EEEEEECSSCCEEEEEEET-TTTEEEEEECSSSCCEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             -eEEEEeCCCCCcceEEEec-ccCeEEEEeCCCCCEEEEEeCCC-------CccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence             2233333445678999999 555554444 2 36788888763       333333 2222467899999988888888


Q ss_pred             ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      -...+.|..+|+......             .+...........++++  ++..++.+-..       .+.|..++..
T Consensus       264 D~~~~~I~~~d~dG~~~~-------------~~~~~~~~l~~P~gl~v--~~~~lywtd~~-------~~~V~~~~~~  319 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNRK-------------TILEDEKRLAHPFSLAV--FEDKVFWTDII-------NEAIFSANRL  319 (400)
T ss_dssp             ETTTTEEEEEETTSCCCE-------------EEEECSSTTSSEEEEEE--ETTEEEEEESS-------SCSEEEEESS
T ss_pred             ECCCCEEEEEeCCCCccE-------------EEEeCCCCCCCCEEEEE--eCCEEEEecCC-------CCeEEEEEcC
Confidence            778889999998753221             12221122334556766  34566654433       3778888754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.80  E-value=2.8e-06  Score=72.77  Aligned_cols=267  Identities=12%  Similarity=0.048  Sum_probs=136.9

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--------CCce-EEEEECCCCCEEEEecCCCeEEEE
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAE-FALAMCPTEPYVLSGGKDKSVVLW  114 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~~v-~~~~~~~~~~~l~s~~~d~~i~vw  114 (387)
                      +..|.+++.++.|..+|.++++            .+.......        ...+ .....  ++..++.++.++.|..+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~------------~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~  118 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGK------------EIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYAL  118 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC------------EEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCc------------eeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEE
Confidence            3466677788999999999883            322222211        1122 12222  45677778889999999


Q ss_pred             EcCCCcCccccCCCcccC--CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe-----EEEEEccCCCeeEEE
Q 016547          115 SIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCS  187 (387)
Q Consensus       115 d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~l~~  187 (387)
                      |.++++............  +......+...  ...+.+...+..+++.+-.+.......     ...... +  ..++.
T Consensus       119 d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~--~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~--~~v~~  193 (376)
T 3q7m_A          119 NTSDGTVAWQTKVAGEALSRPVVSDGLVLIH--TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F--GAAVV  193 (376)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEEETTEEEEE--CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T--TEEEE
T ss_pred             ECCCCCEEEEEeCCCceEcCCEEECCEEEEE--cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C--CEEEE
Confidence            998876543322211100  00000111111  112223333333333333322211110     111222 2  35777


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCC--C--eeE---EEecC-CCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDA--D--LHC---VDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~--i~~---~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      +..++.+..+|.++++  ..-.......  .  +..   +...| ..+..+++++.++.+..+|.++      ++.+...
T Consensus       194 g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~  265 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKR  265 (376)
T ss_dssp             CCTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEE
T ss_pred             EcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeec
Confidence            8889999999999887  2222221110  0  000   00011 0246677788899999999988      7776655


Q ss_pred             ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEE
Q 016547          260 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       260 ~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~  338 (387)
                      ..  .....+...  +..++ .++.++.+..+|..++...               .... .....+......  +..++ 
T Consensus       266 ~~--~~~~~~~~~--~~~l~-~~~~~g~l~~~d~~tG~~~---------------w~~~~~~~~~~~~~~~~--~~~l~-  322 (376)
T 3q7m_A          266 EL--GSVNDFIVD--GNRIY-LVDQNDRVMALTIDGGVTL---------------WTQSDLLHRLLTSPVLY--NGNLV-  322 (376)
T ss_dssp             CC--CCEEEEEEE--TTEEE-EEETTCCEEEEETTTCCEE---------------EEECTTTTSCCCCCEEE--TTEEE-
T ss_pred             cC--CCCCCceEE--CCEEE-EEcCCCeEEEEECCCCcEE---------------EeecccCCCcccCCEEE--CCEEE-
Confidence            42  223444443  44454 5667899999999875332               1111 111122222222  45566 


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                             .++.+|.|.++|..      +++.+...
T Consensus       323 -------v~~~~g~l~~~d~~------tG~~~~~~  344 (376)
T 3q7m_A          323 -------VGDSEGYLHWINVE------DGRFVAQQ  344 (376)
T ss_dssp             -------EECTTSEEEEEETT------TCCEEEEE
T ss_pred             -------EEeCCCeEEEEECC------CCcEEEEE
Confidence                   45556899999988      56555443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.80  E-value=2.2e-06  Score=73.37  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=115.1

Q ss_pred             CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcc
Q 016547           44 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  123 (387)
Q Consensus        44 ~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  123 (387)
                      +..+..++.++.|..+|.+++            +.......... .......  .+..++.++.++.|..+|..++....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG------------~~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDG------------TVAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW  167 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTC------------CEEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCC------------CEEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            345667788899999999988            33333332221 1111112  24467777889999999998876543


Q ss_pred             ccCCCcccC-------CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-------CeEEEEEcc--CCCeeEEE
Q 016547          124 ATDPATAKS-------AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-------TVEDVTFCP--SSAQEFCS  187 (387)
Q Consensus       124 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~l~~  187 (387)
                      .........       +......+...  ...+.+...+..+++.+-.......       .+..+.-.|  .+ ..++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~  244 (376)
T 3q7m_A          168 TVNLDMPSLSLRGESAPTTAFGAAVVG--GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFA  244 (376)
T ss_dssp             EEECCC-----CCCCCCEEETTEEEEC--CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEE
T ss_pred             EEeCCCCceeecCCCCcEEECCEEEEE--cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEE
Confidence            332211100       00000111111  1122222233333333322221100       000000011  12 35777


Q ss_pred             ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-cceE
Q 016547          188 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAV  266 (387)
Q Consensus       188 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~i  266 (387)
                      ++.++.+..+|.++++  ......  ......+..   .+..+.+++.++.|..+|..+      ++.+...... ...+
T Consensus       245 ~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~  311 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHRLL  311 (376)
T ss_dssp             ECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTSCC
T ss_pred             EecCcEEEEEECCCCc--EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCCcc
Confidence            7789999999999887  232222  223444443   456778888899999999988      7766655421 1222


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ......  +..+ ..++.+|.+.++|..++
T Consensus       312 ~~~~~~--~~~l-~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          312 TSPVLY--NGNL-VVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             CCCEEE--TTEE-EEECTTSEEEEEETTTC
T ss_pred             cCCEEE--CCEE-EEEeCCCeEEEEECCCC
Confidence            222222  3334 47778999999999885

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.79  E-value=3.1e-05  Score=66.30  Aligned_cols=203  Identities=3%  Similarity=-0.053  Sum_probs=124.4

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~  109 (387)
                      ...+..++|.+.++.++++-...+.|..++.+..            .....+..... ....+++.+.+..| ++-...+
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~------------~~~~~~~~~~~-~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS------------NVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------CEEEEECSSCS-CCCCEEEETTTTEEEEEETTTT
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC------------CcEEEEeCCCC-CccEEEEEeCCCeEEEEcCCCC
Confidence            4557889999867777777777888999998766            22222221111 23478888755544 4445567


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.+.+++....                                        ...+.........+++.|.++.++++-.
T Consensus       182 ~I~~~~~dg~~~----------------------------------------~~l~~~~l~~P~giavdp~~g~ly~td~  221 (386)
T 3v65_B          182 RIEVANLDGAHR----------------------------------------KVLLWQSLEKPRAIALHPMEGTIYWTDW  221 (386)
T ss_dssp             EEEECBTTSCSC----------------------------------------EEEECSSCSCEEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCce----------------------------------------EEeecCCCCCCcEEEEEcCCCeEEEecc
Confidence            787777653211                                        0112222345789999987756666665


Q ss_pred             CC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          190 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       190 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      .. +.|...++....  ........-...+.|+++|..+.++++-+..+.|..+|+..      ......+.........
T Consensus       222 ~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~g  293 (386)
T 3v65_B          222 GNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFA  293 (386)
T ss_dssp             SSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSEEE
T ss_pred             CCCCEEEEEeCCCCC--cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCceE
Confidence            55 789888887544  22222233445789999983444555555567899998764      2222222222334567


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +++. .+ .++++....+.|..+|...+
T Consensus       294 iav~-~~-~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          294 ITVF-ED-SLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEEE-TT-EEEEEETTTTEEEEEETTTC
T ss_pred             EEEE-CC-EEEEeeCCCCeEEEEECCCC
Confidence            7773 33 47778888889999885443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.79  E-value=1.7e-06  Score=79.88  Aligned_cols=152  Identities=13%  Similarity=0.140  Sum_probs=95.2

Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccC-----------CCe------------------------eEEEecCCCC
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-----------ADL------------------------HCVDWNPLDD  227 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~  227 (387)
                      ..++.++.+|.++++|.++++.  +.......           .++                        ..++++| +.
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~  404 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QT  404 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TT
T ss_pred             eEEEEECCCCEEEEEECCCCCE--eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CC
Confidence            5788899999999999999882  22221110           000                        2578888 77


Q ss_pred             CeEEEeeCC-------------------------------------------CeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          228 NLILTGSAD-------------------------------------------NSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       228 ~~l~~~~~d-------------------------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      .++++...+                                           |.|..||+.+      ++.+-++. +..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t------G~~~W~~~-~~~  477 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA------QKAAWSVE-HVS  477 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT------TEEEEEEE-ESS
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC------CcEEeecC-CCC
Confidence            777765432                                           7799999988      77777665 333


Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEecCC
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ++....+...+..+ +.++.||.+++||.++++.               +..+. ++.....-+.|..+|+.+++..+.-
T Consensus       478 ~~~~g~~~~~g~~v-~~g~~dg~l~a~D~~tG~~---------------lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~  541 (677)
T 1kb0_A          478 PWNGGTLTTAGNVV-FQGTADGRLVAYHAATGEK---------------LWEAPTGTGVVAAPSTYMVDGRQYVSVAVGW  541 (677)
T ss_dssp             SCCCCEEEETTTEE-EEECTTSEEEEEETTTCCE---------------EEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred             CCcCcceEeCCCEE-EEECCCCcEEEEECCCCce---------------eeeeeCCCCcccCCEEEEeCCEEEEEEeccC
Confidence            44455566677754 4678999999999998633               33332 2222334566778887666543220


Q ss_pred             ---------CCCCCCCceEEEEecCC
Q 016547          344 ---------CDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       344 ---------~~tg~~dg~i~iw~~~~  360 (387)
                               .......+.+.+|.+..
T Consensus       542 ~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          542 GGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CccccccccccccCCCCeEEEEeccc
Confidence                     00011147889998873

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.77  E-value=5.3e-05  Score=63.89  Aligned_cols=202  Identities=3%  Similarity=-0.049  Sum_probs=125.4

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~  109 (387)
                      ...+..++|.+.++.++.+-...+.|..++.+..            .....+..... ....+++.+.+..| ++-...+
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~------------~~~~~~~~~~~-~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS------------NVEEVVSTGLE-SPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEECSSCS-CCCEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCC------------CceEEEeCCCC-CccEEEEecCCCeEEEEcCCCC
Confidence            3457889999867777777777888999998776            22222222112 23588888755544 4555567


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.+.+++.....                                        ............+++.|.++.++.+-.
T Consensus       139 ~I~~~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~g~ly~td~  178 (349)
T 3v64_C          139 RIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWTDW  178 (349)
T ss_dssp             EEEEEETTSCSCE----------------------------------------EEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred             eEEEEcCCCCceE----------------------------------------EEEeCCCCCcceEEEecCcCeEEEecc
Confidence            8998887642110                                        111222345689999987657777766


Q ss_pred             CC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          190 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       190 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      .. +.|...++.....  .......-...+.|+++|..+.++++-...+.|..+|+..      ......+...-.....
T Consensus       179 ~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P~g  250 (349)
T 3v64_C          179 GNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHPFA  250 (349)
T ss_dssp             SSSCEEEEEETTSCSC--EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSEEE
T ss_pred             CCCCEEEEEeCCCCCc--EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCceE
Confidence            66 8899998875441  2222223445789999983444445545567899998764      2222222222334567


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +++. . ..++++-...+.|..++..+
T Consensus       251 iav~-~-~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          251 ITVF-E-DSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             EEEE-T-TEEEEEETTTTEEEEEETTT
T ss_pred             EEEE-C-CEEEEecCCCCeEEEEEccC
Confidence            7773 3 34777887888898888544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.77  E-value=2.2e-06  Score=79.24  Aligned_cols=82  Identities=7%  Similarity=0.005  Sum_probs=53.0

Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  315 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  315 (387)
                      +|.|+.||+.+      ++.+-++..+. ++....+...+.. ++.++.||.++.||.++++.               +.
T Consensus       454 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~taggl-vf~gt~dg~l~a~D~~tG~~---------------lw  510 (689)
T 1yiq_A          454 SGKLIAWDPVK------QQAAWEVPYVT-IFNGGTLSTAGNL-VFEGSADGRVIAYAADTGEK---------------LW  510 (689)
T ss_dssp             EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTTE-EEEECTTSEEEEEETTTCCE---------------EE
T ss_pred             ceeEEEEECCC------CCeEeEccCCC-CccCccceECCCE-EEEECCCCcEEEEECCCCcc---------------ce
Confidence            37799999988      77777766433 2333345556664 55789999999999998633               33


Q ss_pred             eecc-CCCCeeEEEEccCCCeEEEEe
Q 016547          316 QHAG-HRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       316 ~~~~-~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      .+.. +.....-+.|..+|+..++..
T Consensus       511 ~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          511 EQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eeeCCCCcccCceEEEECCEEEEEEE
Confidence            3332 222234567778887666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.76  E-value=4.5e-05  Score=63.27  Aligned_cols=222  Identities=5%  Similarity=-0.007  Sum_probs=133.2

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCccc
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      ...|+..+++....          .....+.+-.  ....++|.+.+..|. +-...+.|..++++.....         
T Consensus        12 ~~~I~~i~l~~~~~----------~~~~~~~~~~--~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~---------   70 (318)
T 3sov_A           12 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------   70 (318)
T ss_dssp             EEEEEEEETTCTTS----------CCEEEEEEEE--EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------
T ss_pred             cCeEEEEECCCCce----------EEEEEecCCC--ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------
Confidence            45788888876520          1112222222  245899998655554 4456678888887643110         


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  211 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  211 (387)
                                                    ...+.........+++.+.+++++++-...+.|.++++.....  .....
T Consensus        71 ------------------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~  118 (318)
T 3sov_A           71 ------------------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFW  118 (318)
T ss_dssp             ------------------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC
T ss_pred             ------------------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEe
Confidence                                          0111112234567888876557778877888999999876542  22222


Q ss_pred             ccCCCeeEEEecCCCCCeEEEee--CCCeEEEEEeccCCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeE
Q 016547          212 AHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLL  288 (387)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i  288 (387)
                      ........++++| .+..|..+.  ..+.|..+++.       +.....+ ...-...+.+++++++..|+.+-+..+.|
T Consensus       119 ~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~d-------G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I  190 (318)
T 3sov_A          119 QELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMD-------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  190 (318)
T ss_dssp             SSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETT-------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcC-------CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEE
Confidence            3445678999998 555555544  25778877776       3333333 22224568999999888788888888999


Q ss_pred             EEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          289 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       289 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..+|+......             .+.  .+......++++.  +..++.+-.       ..+.|..++..
T Consensus       191 ~~~d~dG~~~~-------------~~~--~~~~~~P~glav~--~~~lywtd~-------~~~~V~~~~~~  237 (318)
T 3sov_A          191 HKSNLDGTNRQ-------------AVV--KGSLPHPFALTLF--EDILYWTDW-------STHSILACNKY  237 (318)
T ss_dssp             EEEETTSCSCE-------------EEE--CSCCSCEEEEEEE--TTEEEEEET-------TTTEEEEEETT
T ss_pred             EEEcCCCCceE-------------EEe--cCCCCCceEEEEe--CCEEEEEec-------CCCeEEEEECC
Confidence            99998753221             111  1223445677764  345555432       33778888775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.74  E-value=5.7e-06  Score=77.49  Aligned_cols=197  Identities=13%  Similarity=0.119  Sum_probs=107.7

Q ss_pred             cEEEEEec-CCCCcEEEEec-CCC----cEEEEeccCC-CCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           33 EVNRIREL-PQNTKIVATHT-DSP----DVLIWDVEAQ-PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        33 ~v~~i~~~-~~~~~~l~t~~-~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+...+|+ | ++++||-+. .+|    +|+++|+.++ +...        ..   +..    ....+.|+|||+.|+..
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------~~---~~~----~~~~~~WspDg~~l~y~  238 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------DK---VSG----TNGEIVWGPDHTSLFYV  238 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------CC---EEE----ECSCCEECSSTTEEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------cc---ccC----ceeeEEEecCCCEEEEE
Confidence            67889999 8 787777443 233    5999999887 4211        11   111    12368899999988776


Q ss_pred             cCC-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEcc
Q 016547          106 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP  179 (387)
Q Consensus       106 ~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~  179 (387)
                      ..|     ..|.++++.++...                                      ....+. ........+.|+|
T Consensus       239 ~~d~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~Sp  280 (751)
T 2xe4_A          239 TKDETLRENKVWRHVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAA  280 (751)
T ss_dssp             EECTTCCEEEEEEEETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred             EECCCCCCCEEEEEECCCCchh--------------------------------------cEEEEecCCCceEEEEEECC
Confidence            654     25667776543210                                      001111 1223456789999


Q ss_pred             CCCeeEEEec--CCCeEEEEEccCCCCce--eEEeeccCCCeeEEEecCCCCCeEEEeeCC--C--eEEEEEeccCCCCC
Q 016547          180 SSAQEFCSVG--DDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSAD--N--SVRMFDRRNLTSNG  251 (387)
Q Consensus       180 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g--~i~~~d~~~~~~~~  251 (387)
                      ++..++++..  ....|.++|+.++....  ............++.|+. ++.+++....+  +  .|..+|+.+     
T Consensus       281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~-----  354 (751)
T 2xe4_A          281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ-----  354 (751)
T ss_dssp             TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS-----
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC-----
Confidence            9954444442  24468888988753212  222233344555666554 44445554444  3  455555543     


Q ss_pred             CCCceEE-eccccc--eEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          252 VGSPINK-FEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       252 ~~~~~~~-~~~~~~--~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                       ...... +-.+..  .+..+.+.  +..|+++...++..++|-
T Consensus       355 -~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          355 -PSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             -TTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             -cccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence             111122 222322  45555554  556777888888655543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.71  E-value=1.4e-05  Score=66.13  Aligned_cols=217  Identities=13%  Similarity=0.033  Sum_probs=124.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ....++|+++++.+++-..++.|..||......                                         ..+ ..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~~~-~~   70 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------IHA-TV   70 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------EEE-EC
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------EEE-eC
Confidence            357899999998777776788998888753210                                         111 11


Q ss_pred             CCCeEEEEEccCCCeeEEEecC-C-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGD-D-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ......+++.+++ +++++... + ..|..+|..+++....... ........++..+ ++..+++-..++.|..+|...
T Consensus        71 ~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           71 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT
T ss_pred             CCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCC
Confidence            2357889999998 55555433 2 2477777766662111111 1222334555555 454455544688888888754


Q ss_pred             CCCCCCCC-ceEEe---------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee
Q 016547          247 LTSNGVGS-PINKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  316 (387)
Q Consensus       247 ~~~~~~~~-~~~~~---------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  316 (387)
                            +. .+...         ...-...+.+  ++++++|+++-...+.|..|++...+..         .....+..
T Consensus       148 ------~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~  210 (306)
T 2p4o_A          148 ------PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVE  210 (306)
T ss_dssp             ------TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEE
T ss_pred             ------CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEec
Confidence                  21 11100         0011234455  7888888888888899999998752111         00111211


Q ss_pred             eccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchh--hhhhhccCceEEEeeec
Q 016547          317 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV--LAELEKFKAHVISCTSK  386 (387)
Q Consensus       317 ~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~f~  386 (387)
                      +    .....++++++|..++ +       ....+.|.+++..       ++.  +..+...-...++++|.
T Consensus       211 ~----~~P~gi~vd~dG~l~v-a-------~~~~~~V~~~~~~-------G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          211 Q----TNIDDFAFDVEGNLYG-A-------THIYNSVVRIAPD-------RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             S----CCCSSEEEBTTCCEEE-E-------CBTTCCEEEECTT-------CCEEEEECGGGTCTTEEEEEEC
T ss_pred             c----CCCCCeEECCCCCEEE-E-------eCCCCeEEEECCC-------CCEEEEeecccccCCceEEEEe
Confidence            1    3467789999987544 3       2234789998865       332  22233223456777774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.70  E-value=4e-06  Score=77.36  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             EEEecCCCCcEEEEecCCC-----------cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           36 RIRELPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      .+++.+.++++++.|+.+.           .+.+||..+.+          ...+..+.........++++..+++.++.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~  259 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----------VSDRTVTVTKHDMFCPGISMDGNGQIVVT  259 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----------BCCCEEEECSCCCSSCEEEECTTSCEEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc----------EEeCcccCCCCCCccccccCCCCCCEEEe
Confidence            4455654778888887543           58889988772          23333343322222335788889999999


Q ss_pred             ecC-CCeEEEEEcCCC
Q 016547          105 GGK-DKSVVLWSIQDH  119 (387)
Q Consensus       105 ~~~-d~~i~vwd~~~~  119 (387)
                      |+. +..+.+||..+.
T Consensus       260 GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          260 GGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             CSSSTTCEEEEEGGGT
T ss_pred             CCCCCCceEEecCcCC
Confidence            884 468999998754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.68  E-value=9.8e-05  Score=68.88  Aligned_cols=224  Identities=4%  Similarity=-0.059  Sum_probs=132.9

Q ss_pred             CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547           54 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKS  132 (387)
Q Consensus        54 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  132 (387)
                      ..|+..++...            ..........  .+..|+|.+.+..| ++-...+.|+.+++......          
T Consensus       404 ~~Ir~i~l~~~------------~~~~l~~~~~--~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~----------  459 (791)
T 3m0c_C          404 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----------  459 (791)
T ss_dssp             SSEEEECTTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred             cceeEeeccCC------------cceeeecCCC--ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----------
Confidence            45777777655            3333344433  35699999865554 45455678888887642100          


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547          133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  212 (387)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  212 (387)
                                                ......+.........|++.+.+++++++-...+.|.+.++....  .......
T Consensus       460 --------------------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~~  511 (791)
T 3m0c_C          460 --------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE  511 (791)
T ss_dssp             ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred             --------------------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEeC
Confidence                                      001122222334567788887776788888888999999987654  2223333


Q ss_pred             cCCCeeEEEecCCCCCeEEEee-CC-CeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547          213 HDADLHCVDWNPLDDNLILTGS-AD-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLN  289 (387)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~  289 (387)
                      .......|+++| ....|+... .. +.|...++.       +.....+. ..-.....|++.+.+..|+++-.....|.
T Consensus       512 ~l~~P~gIaVDp-~~g~LYwtD~g~~~~I~~~~~d-------G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          512 NGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLN-------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             TTCCEEEEEEET-TTTEEEEEECSSSCEEEEEETT-------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCcceEEEec-CCCCEEEecCCCCCeEEEEecC-------CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            445688999999 544444443 33 678888876       34433332 22246789999988877887877788999


Q ss_pred             EEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..++......             .+....+.-....+|++.  +.+|+++-..       .+.|...+..
T Consensus       584 ~~d~dG~~~~-------------~v~~~~~~l~~P~glav~--~~~lYwtD~~-------~~~I~~~dk~  631 (791)
T 3m0c_C          584 SIDVNGGNRK-------------TILEDEKRLAHPFSLAVF--EDKVFWTDII-------NEAIFSANRL  631 (791)
T ss_dssp             EEETTSCSCE-------------EEEECTTTTSSEEEEEEE--TTEEEEEETT-------TTEEEEEETT
T ss_pred             EEecCCCceE-------------EEecCCCccCCCCEEEEe--CCEEEEEECC-------CCEEEEEeCC
Confidence            9998753221             121111122234566653  4466664433       3777777654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.61  E-value=3.2e-06  Score=77.90  Aligned_cols=75  Identities=13%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             EEEEEccCCCeeEEEecCCC-------------------eEEEEEccCCCCceeEEeec--cC-------CCeeEEEecC
Q 016547          173 EDVTFCPSSAQEFCSVGDDS-------------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNP  224 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~--~~-------~~i~~~~~~~  224 (387)
                      ..+++.|+. .+++.++.++                   .|..+|.++++.  .-.+..  |.       .++....+..
T Consensus       233 ~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~--~W~~~~~~~~~wd~~~~~~~~~~d~~~  309 (668)
T 1kv9_A          233 DSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL--AWHYQVTPGDSWDFTATQQITLAELNI  309 (668)
T ss_dssp             SCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE--EEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             cceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce--eeEeecCCCccccccCCCCcEEEEecc
Confidence            356777776 5666666665                   499999999883  322222  22       2222223333


Q ss_pred             CCCC---eEEEeeCCCeEEEEEeccCCCCCCCCceE
Q 016547          225 LDDN---LILTGSADNSVRMFDRRNLTSNGVGSPIN  257 (387)
Q Consensus       225 ~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  257 (387)
                       +++   .++.++.+|.++++|..+      ++.+.
T Consensus       310 -~G~~~~~v~~~~~~G~l~~lD~~t------G~~l~  338 (668)
T 1kv9_A          310 -DGKPRKVLMQAPKNGFFYVLDRTN------GKLIS  338 (668)
T ss_dssp             -TTEEEEEEEECCTTSEEEEEETTT------CCEEE
T ss_pred             -CCcEEEEEEEECCCCEEEEEECCC------CCEec
Confidence             454   688999999999999988      66653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.59  E-value=0.00018  Score=59.73  Aligned_cols=203  Identities=4%  Similarity=-0.058  Sum_probs=123.9

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE-EEEecCCCe
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKS  110 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~-l~s~~~d~~  110 (387)
                      ..+.+++|.+.++.++.+-...+.|..++.+....           ....+...-. ....+++.+.+.. .++-...+.
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~  102 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNR  102 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS-CCCEEEEETTTTEEEEEETTTTE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC-CccEEEEEcCCCeEEEEECCCCE
Confidence            45778999986777778877788999999876521           1111211111 2357888875544 445556788


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec-
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-  189 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-  189 (387)
                      |.+.+++.....                                        ............+++.|.++.++.+-. 
T Consensus       103 I~~~~~dG~~~~----------------------------------------~l~~~~~~~P~giavdp~~g~ly~td~~  142 (318)
T 3sov_A          103 IEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDWG  142 (318)
T ss_dssp             EEEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred             EEEEECCCCcEE----------------------------------------EEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            999988642110                                        111123345689999987646555542 


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEeccccceEEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      ..+.|...++.....  .......-...+.|+++| ++..|..+ +..+.|..+|+..      ..........-.....
T Consensus       143 ~~~~I~r~~~dG~~~--~~~~~~~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P~g  213 (318)
T 3sov_A          143 EVPKIERAGMDGSSR--FIIINSEIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDG------TNRQAVVKGSLPHPFA  213 (318)
T ss_dssp             SSCEEEEEETTSCSC--EEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS------CSCEEEECSCCSCEEE
T ss_pred             CCCEEEEEEcCCCCe--EEEEECCCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCC------CceEEEecCCCCCceE
Confidence            367888888765431  222222334578999998 55555444 4568899999863      2222222222344567


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +++..  ..++.+-...+.|..++..++.
T Consensus       214 lav~~--~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          214 LTLFE--DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence            77753  3477787788999999986543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.57  E-value=2.4e-05  Score=65.33  Aligned_cols=202  Identities=12%  Similarity=0.037  Sum_probs=115.4

Q ss_pred             CcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC-CCCEEEEecC---
Q 016547           32 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGK---  107 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~-~~~~l~s~~~---  107 (387)
                      +.+..+++.+.+++++++... +.|..+|..++... .+        .....+........+++.+ +|+..++-..   
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~-~~--------~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~  149 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHAT-QL--------ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY  149 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECE-EE--------ESEETTEECSCEEEEEECTTTCCEEEEESCSSC
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEE-Ee--------cccCCCCcccccceEEEecCCCEEEEECCcccc
Confidence            357889988645665555333 44888887654110 00        0001111112357889999 8876665432   


Q ss_pred             --------------CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeE
Q 016547          108 --------------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  173 (387)
Q Consensus       108 --------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  173 (387)
                                    ++.|..+|..++..                                         ..+........
T Consensus       150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~-----------------------------------------~~~~~~~~~p~  188 (322)
T 2fp8_A          150 DDRGVQQIMDTSDKTGRLIKYDPSTKET-----------------------------------------TLLLKELHVPG  188 (322)
T ss_dssp             CTTCHHHHHHHTCCCEEEEEEETTTTEE-----------------------------------------EEEEEEESCCC
T ss_pred             cccccceehcccCCCceEEEEeCCCCEE-----------------------------------------EEeccCCccCc
Confidence                          25566666543211                                         11111112345


Q ss_pred             EEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC----------CCeEEEEE
Q 016547          174 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----------DNSVRMFD  243 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~~~d  243 (387)
                      .++++|++..++++-...+.|..|++..........+....+ ...+++++ ++++.++...          .+.|..+|
T Consensus       189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d  266 (322)
T 2fp8_A          189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFD  266 (322)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEEC
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEEC
Confidence            789999984455665677899999987532111222211223 78899999 8887766544          45677777


Q ss_pred             eccCCCCCCCCceEEecccc----ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          244 RRNLTSNGVGSPINKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      ..       ++.+..+....    ..+..+++ .++ .|+++...++.|.++++..
T Consensus       267 ~~-------G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          267 EF-------GNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TT-------SCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEEC--
T ss_pred             CC-------CCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEeccc
Confidence            53       56666664332    34566666 344 4777777788999999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.55  E-value=0.00022  Score=59.18  Aligned_cols=230  Identities=7%  Similarity=-0.021  Sum_probs=133.4

Q ss_pred             ceeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE
Q 016547            2 FLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI   81 (387)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   81 (387)
                      |++.....+..++..... .   .........+.+++|.+.++.++++-..++.|..+++......        ......
T Consensus         4 ll~~~~~~I~~i~~~~~~-~---~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------~~~~~~   71 (316)
T 1ijq_A            4 LFFTNRHEVRKMTLDRSE-Y---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTV   71 (316)
T ss_dssp             EEEECBSSEEEEETTSCC-C---EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEE
T ss_pred             EEEECCCeEEEEECCCcc-e---EehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------cccEEE
Confidence            455555556555544322 1   1223445668899999866777778777899999998762000        011122


Q ss_pred             EeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      +...-. ....+++.+.+..| ++-...+.|.+.+++.....                                      
T Consensus        72 ~~~~~~-~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~--------------------------------------  112 (316)
T 1ijq_A           72 ISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------------------------------------  112 (316)
T ss_dssp             ECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE--------------------------------------
T ss_pred             EeCCCC-CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE--------------------------------------
Confidence            222111 23588888755544 45456788999887632110                                      


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEecCC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCe
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNS  238 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~  238 (387)
                        ............+++.|.++.++.+.... +.|...++....  ........-...+.|+++| ++..| ++-+..+.
T Consensus       113 --~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~-~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          113 --TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHS  187 (316)
T ss_dssp             --EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEET-TTTEEEEEETTTTE
T ss_pred             --EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEec-cCCEEEEEECCCCe
Confidence              11112234568999998765666665443 788888876443  1112222345678999998 55554 44445678


Q ss_pred             EEEEEeccCCCCCCCCceEEec---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          239 VRMFDRRNLTSNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      |..+|+..       .....+.   ..-.....+++.  +.+++++-...+.|..++..++
T Consensus       188 I~~~d~dg-------~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          188 ISSIDVNG-------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             EEEEETTS-------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEecCC-------CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCC
Confidence            99999873       2222221   112335677774  3457778888889999987654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.54  E-value=2.4e-06  Score=79.00  Aligned_cols=156  Identities=3%  Similarity=-0.104  Sum_probs=93.0

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee-CC-CeEEEEEeccCCC
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-AD-NSVRMFDRRNLTS  249 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~~~~  249 (387)
                      ...|++.+.+++++++-...+.|.+.++....  ..............|+++| .+.+|+.+. .. +.|..+++..   
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp-~~g~ly~td~~~~~~I~~~~~dG---  528 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDP-VHGFMYWTDWGTPAKIKKGGLNG---  528 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCS-SSSCCEECCCSSSCCEEBCCSSS---
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEcc-CCCcEEEcccCCCCeEEEEeCCC---
Confidence            45677776554667776677899999987654  2222222334568899999 544444433 33 6787777653   


Q ss_pred             CCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547          250 NGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       250 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                          .....+. ..-...+.|+|+|++..|+++-+..+.|.++++......             .+...........+|+
T Consensus       529 ----~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-------------~~~~~~~~~~~P~gla  591 (699)
T 1n7d_A          529 ----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-------------TILEDEKRLAHPFSLA  591 (699)
T ss_dssp             ----CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-------------EECCCSSSCSSCCCCE
T ss_pred             ----CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-------------EEEecCCcCCCceEeE
Confidence                2222221 112345689999987778888888889999998753221             1111111222344556


Q ss_pred             EccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +..  ..++++.       ...+.|..++..
T Consensus       592 vd~--~~lywtd-------~~~~~V~~~d~~  613 (699)
T 1n7d_A          592 VFE--DKVFWTD-------IINEAIFSANRL  613 (699)
T ss_dssp             EET--TEEEEEC-------STTTCEEEEETT
T ss_pred             EEC--CEEEEEe-------CCCCeEEEEEcc
Confidence            644  3566543       334889988875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=0.00026  Score=61.49  Aligned_cols=258  Identities=7%  Similarity=0.024  Sum_probs=134.4

Q ss_pred             cEEEEEecC-CCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecC-CC-
Q 016547           33 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK-  109 (387)
Q Consensus        33 ~v~~i~~~~-~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~-d~-  109 (387)
                      ....|++.| .++.+.++-.. +.|+.+|++..            ....... ... ....++|++++++|+.+.. ++ 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~------------~v~~~~~-~~~-~P~~ia~d~~G~~lyvad~~~~~  202 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE------------YVSTVYS-GLS-KVRTICWTHEADSMIITNDQNNN  202 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT------------EEEEEEC-CCS-CEEEEEECTTSSEEEEEECCSCT
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC------------EEEEEec-CCC-CcceEEEeCCCCEEEEEeCCCCc
Confidence            456788887 34555555433 78888888776            2222222 222 3579999999996666553 22 


Q ss_pred             ---eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          110 ---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       110 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                         .+.+.+.. +...                                      ....+. .......+++.|+++.+++
T Consensus       203 ~~~~v~~~~~~-g~~~--------------------------------------~~~~l~-~~~~p~giavdp~~g~lyv  242 (430)
T 3tc9_A          203 DRPNNYILTRE-SGFK--------------------------------------VITELT-KGQNCNGAETHPINGELYF  242 (430)
T ss_dssp             TSEEEEEEEGG-GTSC--------------------------------------SEEEEE-ECSSCCCEEECTTTCCEEE
T ss_pred             ccceEEEEeCC-Ccee--------------------------------------eeeeec-cCCCceEEEEeCCCCEEEE
Confidence               23333322 1110                                      001111 1233567889994437777


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEEecc----
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----  261 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~----  261 (387)
                      +-..++.|..++........... .........++++| +++ ++++-...+.|..++.......  ...+..+.+    
T Consensus       243 ~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g~  318 (430)
T 3tc9_A          243 NSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDWKTKR--LTTPYIVCGQQGA  318 (430)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTE--ECCCEEEEECTTC
T ss_pred             EECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCccccc--ccceEEEeccCCC
Confidence            77788899999987655211111 11224578999999 888 4455556788999887631000  000111111    


Q ss_pred             ------------ccceEEEEEEc--------CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee---eeec
Q 016547          262 ------------HSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF---FQHA  318 (387)
Q Consensus       262 ------------~~~~i~~~~~~--------~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~  318 (387)
                                  ...+-..++..        +++. |+++-.....|+.++..  +.................   ....
T Consensus       319 ~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~~--G~v~~~~g~g~~~~~G~~dG~~~~~  395 (430)
T 3tc9_A          319 KDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQ--GRVTTFAGRGSNGTSGYNDGDLRQE  395 (430)
T ss_dssp             BCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECTT--SEEEEEEECCTTSSSSCBCEETTTT
T ss_pred             CCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECCC--CcEEEEEeCCCCCCCcccCCCchhh
Confidence                        11111145553        2344 66666667888888832  111110000000000000   0000


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..-.....++++|++..|+++-...       +.|+.++++
T Consensus       396 ~~~~~P~giavd~~~g~lyVaD~~n-------~rIr~i~~e  429 (430)
T 3tc9_A          396 ARFNHPEGIVYDEERECFFIGDREN-------RRIRKIGYE  429 (430)
T ss_dssp             CBCSSEEEEEEETTTTEEEEEEGGG-------TEEEEEEEC
T ss_pred             cEeCCCcEEEEECCCCEEEEEECCC-------CeEEEEccC
Confidence            1122578999999766677655444       788888765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=0.00034  Score=60.74  Aligned_cols=258  Identities=9%  Similarity=0.035  Sum_probs=134.1

Q ss_pred             cEEEEEecCC--CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC--
Q 016547           33 EVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--  108 (387)
Q Consensus        33 ~v~~i~~~~~--~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d--  108 (387)
                      ....|++.|.  +++++++-.. +.|+.+|..++            .. ..+..... ....++++++|+++++....  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g------------~v-~~~~~~~~-~P~giavd~dG~lyVad~~~~~  204 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ------------YV-DIKTTNIG-QCADVNFTLNGDMVVVDDQSSD  204 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTT------------EE-EEECCCCS-CEEEEEECTTCCEEEEECCSCT
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCC------------EE-EEeecCCC-CccEEEECCCCCEEEEcCCCCc
Confidence            4568888883  4665555444 88999998766            22 22222222 35799999999944443311  


Q ss_pred             -Ce-EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          109 -KS-VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       109 -~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                       .. +...+.... .                                      .....+. .-.....+++.|+++.+++
T Consensus       205 ~~~gv~~~~~~~~-~--------------------------------------~~~~~~~-~~~~P~giavd~~~G~lyv  244 (433)
T 4hw6_A          205 TNTGIYLFTRASG-F--------------------------------------TERLSLC-NARGAKTCAVHPQNGKIYY  244 (433)
T ss_dssp             TSEEEEEECGGGT-T--------------------------------------CCEEEEE-ECSSBCCCEECTTTCCEEE
T ss_pred             ccceEEEEECCCC-e--------------------------------------ecccccc-ccCCCCEEEEeCCCCeEEE
Confidence             11 222221110 0                                      0000111 1234567889994336666


Q ss_pred             EecCCCeEEEEEccCCCCceeEEee-ccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEeccc--
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--  262 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~--  262 (387)
                      +-..++.|+.+|..++... ..... ........++++| +++.| ++-...+.|+.++.......  ......+.+.  
T Consensus       245 ~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g  320 (433)
T 4hw6_A          245 TRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRETGK--LAVPYIVCGQHS  320 (433)
T ss_dssp             CBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTTCC--BCCCEEEEECTT
T ss_pred             EECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCCcc--cCcEEEEEecCC
Confidence            7667889999998766520 11111 1122234699999 88844 44455688999886531100  0001111110  


Q ss_pred             -------------cceEEEEEE---------cCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeee---ee
Q 016547          263 -------------SAAVLCVQW---------SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF---QH  317 (387)
Q Consensus       263 -------------~~~i~~~~~---------~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~  317 (387)
                                   -.....+++         .+++. |+++-...+.|+.++...  ..................   ..
T Consensus       321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~  397 (433)
T 4hw6_A          321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRS  397 (433)
T ss_dssp             CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTS--EEEEEECCCTTCSSCCBCEETTT
T ss_pred             CCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCC--CEEEEEeCCCCCccccCCCcccc
Confidence                         123567888         56665 666777788999998532  211100000000000000   00


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ...-.....++++|.+..|+++-...       +.|+.++++
T Consensus       398 ~~~~~~P~giavd~~~g~lyVaD~~n-------~rIr~i~~e  432 (433)
T 4hw6_A          398 QALFNHPTSIAYDMKRKCFYIGDCDN-------HRVRKIAPE  432 (433)
T ss_dssp             TCBCSSEEEEEEETTTTEEEEEEGGG-------TEEEEEEEC
T ss_pred             ccEeCCCcEEEEECCCCEEEEEeCCC-------CEEEEEecC
Confidence            01123468899995555566654433       788888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.46  E-value=0.00053  Score=58.93  Aligned_cols=208  Identities=8%  Similarity=-0.040  Sum_probs=124.0

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEec
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGG  106 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~  106 (387)
                      ......+..|+|.+.++.++.+-...+.|+.+++......        ......+..... ....+++.+.+. ..++-.
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavD~~~~~lY~~d~  178 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDS  178 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CCCEEEECSSCS-CEEEEEEETTTTEEEEEET
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--------CcceEEEeCCCC-CcccEEEEecCCceEEEEC
Confidence            3455678899999867777777777888998988763100        012222222222 356888887444 444555


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      ..+.|.+.+++.....                                        ..+.........|++.|.++.++.
T Consensus       179 ~~~~I~~~~~~g~~~~----------------------------------------~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          179 VLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             TTTEEEEECTTTCSEE----------------------------------------EEEECSSCCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEeCCCCceE----------------------------------------EEEeCCCCCcceEEEecccCeEEE
Confidence            6778888887642110                                        111222345789999997646666


Q ss_pred             Eec-CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEe-cc--
Q 016547          187 SVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKF-EG--  261 (387)
Q Consensus       187 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~-~~--  261 (387)
                      +-. ..+.|...++....  ........-...+.|++++ ++..|..+ ...+.|..+|+..       .....+ ..  
T Consensus       219 td~~~~~~I~~~~~dG~~--~~~~~~~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~  288 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEK  288 (400)
T ss_dssp             EECSSSCCEEEEETTSCS--CEEEECSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTS-------CCCEEEEECSS
T ss_pred             EeCCCCCEEEEEeCCCCc--cEEEEECCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCC-------CccEEEEeCCC
Confidence            543 34788888887544  2222223335678999998 55555544 4567899999864       222222 21  


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .-.....+++.  +..++.+-...+.|..+|..++
T Consensus       289 ~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          289 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence            12334567763  3457778888888999986554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.42  E-value=0.00073  Score=63.10  Aligned_cols=208  Identities=9%  Similarity=-0.013  Sum_probs=124.0

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGK  107 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~  107 (387)
                      .....+..|+|.+.++.++++-...+.|+.+++......        ......+...-. ....|++.+.++.|+ +-..
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD~~  491 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSV  491 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC--------cceeEEEecCCC-CcceeeeeecCCcEEEEecC
Confidence            345667889998867777777777888998888753100        012222332222 245888887775554 4456


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      .+.|.+.+++.....                                        ..+.........|++.|.++.++++
T Consensus       492 ~~~I~v~~ldG~~~~----------------------------------------~l~~~~l~~P~gIaVDp~~g~LYwt  531 (791)
T 3m0c_C          492 LGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYWT  531 (791)
T ss_dssp             TTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeCCCCeEE----------------------------------------EEEeCCCCCcceEEEecCCCCEEEe
Confidence            788999888642210                                        1112233457899999976466666


Q ss_pred             ecC-CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-cc--cc
Q 016547          188 VGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EG--HS  263 (387)
Q Consensus       188 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~--~~  263 (387)
                      -.. .+.|...++....  ........-...+.|++++..++++++=...+.|..+++..       .....+ ..  .-
T Consensus       532 D~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-------~~~~~v~~~~~~l  602 (791)
T 3m0c_C          532 DWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRL  602 (791)
T ss_dssp             ECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTTT
T ss_pred             cCCCCCeEEEEecCCCc--eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-------CceEEEecCCCcc
Confidence            433 3788888887554  22233333457889999983444444444567888888864       333322 21  11


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ....+|++.  +.+|+++-...+.|...|..++
T Consensus       603 ~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          603 AHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence            234466664  3357878888888988886654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.41  E-value=3.8e-05  Score=71.96  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=89.9

Q ss_pred             ceEEEEEC-CCCCEEEEecC-C----CeEEEEEcCCC-cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           89 AEFALAMC-PTEPYVLSGGK-D----KSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        89 ~v~~~~~~-~~~~~l~s~~~-d----~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      .+....|| |||++|+.+.. +    .+|+++|+.++ ....                                      
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------------------------  216 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------------------------  216 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------------------------
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------------------------
Confidence            46789999 99998884432 2    35999999864 2110                                      


Q ss_pred             ceeecCCCCCeEEEEEccCCCeeEEEecCC----CeEEEEEccCCCCceeEEee-ccCCCeeEEEecCCCCCeEEEeeC-
Q 016547          162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD----SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA-  235 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~-  235 (387)
                       ..+.   .....+.|+||+..++++...+    ..|.++++.++.......+. ........+.|+| ++++|+..+. 
T Consensus       217 -~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~  291 (751)
T 2xe4_A          217 -DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQS  291 (751)
T ss_dssp             -CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEEC
T ss_pred             -cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecC
Confidence             0011   1134688999995544443321    35888888765422122222 2234466889999 9988887663 


Q ss_pred             --CCeEEEEEeccCCCCCCCCc-eEEe-ccccceEEEEEEcCCCCeeEEEecCC----CeEEEEeCCC
Q 016547          236 --DNSVRMFDRRNLTSNGVGSP-INKF-EGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEK  295 (387)
Q Consensus       236 --dg~i~~~d~~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d----~~i~vwd~~~  295 (387)
                        ...|.++|+.+..    ... +..+ .........+.|+. +..+++....+    ..|..+|+..
T Consensus       292 ~~~~~l~~~d~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          292 PETAEVHLLDLRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSCEEEEEEESSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCceEEEEECCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence              3468888887621    122 1223 22334445555544 55455555443    3566666653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.40  E-value=0.0015  Score=61.76  Aligned_cols=251  Identities=8%  Similarity=0.046  Sum_probs=143.4

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      ...|.++...+ ++.+.+ |+.+| |.+||..+.....-......      -..-....|.++...++|... .|+.++-
T Consensus       262 ~~~i~~i~~d~-~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~------~~~l~~~~i~~i~~D~~g~lW-igt~~~G  331 (795)
T 4a2l_A          262 SNYIRSLAMDS-QNRLWI-GTFND-LNIYHEGTDSFASYSSNPVE------NGSLSQRSVRSIFMDSQGGMW-LGTYFGG  331 (795)
T ss_dssp             CSBEEEEEECT-TSCEEE-EESSC-EEEEETTTTEEEEECCCTTS------TTSCSSSCEEEEEECTTSCEE-EEESSSC
T ss_pred             CCeEEEEEEcC-CCCEEE-EeCCh-hheEcCCCCeEEEEecCCCC------CCCCCCCcEEEEEEeCCcCEE-EEECCCC
Confidence            35689998777 555443 44454 88898766521000000000      001122368999999888754 4555677


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      |..++..+.........                             .     ..-.-....|.++...+++ . +-.|+.
T Consensus       332 l~~~~~~~~~~~~~~~~-----------------------------~-----~~~~l~~~~V~~i~~d~~g-~-lWiGt~  375 (795)
T 4a2l_A          332 LNYYHPIRNRFKNIRNI-----------------------------P-----YKNSLSDNVVSCIVEDKDK-N-LWIGTN  375 (795)
T ss_dssp             EEEECGGGGSSEEECCC-----------------------------T-----TSSSCSCSSEEEEEECTTS-C-EEEEES
T ss_pred             eEEeCCCcccceEEcCC-----------------------------C-----CCCCCCCCeeEEEEECCCC-C-EEEEEC
Confidence            88888654322110000                             0     0000123568999888877 4 556777


Q ss_pred             CCeEEEEEccCCCCceeEEee--------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec--
Q 016547          191 DSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--  260 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--  260 (387)
                      ++-|..||..++.  ......        .....|.++..++ ++++|.+|+.++-|..||..+      ++ +..+.  
T Consensus       376 ~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~  445 (795)
T 4a2l_A          376 DGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQR  445 (795)
T ss_dssp             SSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTT
T ss_pred             CCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecC
Confidence            7789999987765  221111        1235688998887 777577788877799999875      33 22232  


Q ss_pred             ---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEE
Q 016547          261 ---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       261 ---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  337 (387)
                         .....|.++...++|. |. .|+. +.+.+||.....-. ......  .+      ..-....|.++...+++...+
T Consensus       446 ~~~l~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~-~~~~~~--~~------~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGN-LW-LGTL-SALVRFNPEQRSFT-TIEKEK--DG------TPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSC-EE-EEES-SCEEEEETTTTEEE-ECCBCT--TC------CBCCCCCEEEEEECTTCCEEE
T ss_pred             CCCcCCCeeEEEEECCCCC-EE-EEec-CceeEEeCCCCeEE-Eccccc--cc------cccCCceEEEEEECCCCCEEE
Confidence               1345789999988888 44 3333 45888987653111 000000  00      011235788999998887666


Q ss_pred             EEecCCCCCCCCCceEEEEecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+         . +-|..|+..
T Consensus       514 gt---------~-~Gl~~~~~~  525 (795)
T 4a2l_A          514 GG---------E-EGLSVFKQE  525 (795)
T ss_dssp             EE---------S-SCEEEEEEE
T ss_pred             Ee---------C-CceEEEeCC
Confidence            32         1 347777765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.39  E-value=3.8e-05  Score=69.29  Aligned_cols=59  Identities=17%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CeEEEEEccCCCCceeEEee--ccC-------CCeeEEEecCCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          192 SCLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~--~~~-------~~i~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      +.|..+|.++++.  .-.+.  .|.       ....-+...+ ++   ..++.++.+|.+.++|..+      ++.+..+
T Consensus       272 ~~v~Ald~~tG~~--~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~~w~~  342 (571)
T 2ad6_A          272 MTIWGRDLDTGMA--KWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNREN------GNLIVAE  342 (571)
T ss_dssp             TEEEEEETTTCCE--EEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTT------CCEEEEE
T ss_pred             EEEEEEecCCCcE--EEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCC------CCEEeee
Confidence            3688999998872  22222  121       1111122223 45   3677888999999999988      6665554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.33  E-value=0.0018  Score=59.11  Aligned_cols=221  Identities=6%  Similarity=-0.034  Sum_probs=133.6

Q ss_pred             CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcc
Q 016547           52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATA  130 (387)
Q Consensus        52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~  130 (387)
                      ....|+..++++.            .....+....-.....++|++.+..|. +-..++.|..++++.....        
T Consensus        13 ~~~~I~~i~l~~~------------~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--------   72 (628)
T 4a0p_A           13 RRADIRRISLETN------------NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--------   72 (628)
T ss_dssp             ETTEEEEEESSCT------------TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------
T ss_pred             eCCcEEEEECCCC------------CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------
Confidence            3457888888765            222222111111356999998766655 4446788888887642110        


Q ss_pred             cCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEe
Q 016547          131 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE  210 (387)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  210 (387)
                                                      ..+.........+++.+.+++++.+-...+.|.+.++.....  ....
T Consensus        73 --------------------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--~~l~  118 (628)
T 4a0p_A           73 --------------------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--QVLV  118 (628)
T ss_dssp             --------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--EEEE
T ss_pred             --------------------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--EEEE
Confidence                                            111111234567888776657778877889999999876542  2222


Q ss_pred             eccCCCeeEEEecCCCCCeEEEeeC--CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeE
Q 016547          211 KAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLL  288 (387)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i  288 (387)
                      ...-.....|+++| ....|.....  .+.|...++..       .....+-..-.....|++++++..|+++-...+.|
T Consensus       119 ~~~l~~P~~iavdp-~~G~lY~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I  190 (628)
T 4a0p_A          119 WKDLDSPRALALDP-AEGFMYWTEWGGKPKIDRAAMDG-------SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI  190 (628)
T ss_dssp             CSSCCCEEEEEEET-TTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             eCCCCCcccEEEcc-CCCeEEEeCCCCCCEEEEEeCCC-------CceEEEECCCCCcceEEEccccCEEEEEECCCCEE
Confidence            23445678999999 5445554442  46677777663       33333322345678999999888888888888999


Q ss_pred             EEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          289 NIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       289 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..+|+.....             ..+   ........++++..  .+++++-.       ..+.|...|..
T Consensus       191 ~~~d~dG~~~-------------~v~---~~~l~~P~glav~~--~~ly~tD~-------~~~~I~~~dk~  236 (628)
T 4a0p_A          191 ESSNMLGLNR-------------EVI---ADDLPHPFGLTQYQ--DYIYWTDW-------SRRSIERANKT  236 (628)
T ss_dssp             EEEETTSCSC-------------EEE---EECCSCEEEEEEET--TEEEEEET-------TTTEEEEEETT
T ss_pred             EEEcCCCCce-------------EEe---eccCCCceEEEEEC--CEEEEecC-------CCCEEEEEECC
Confidence            9999976322             111   12223445777654  45665433       23777777754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.28  E-value=0.0021  Score=58.49  Aligned_cols=157  Identities=3%  Similarity=-0.044  Sum_probs=101.2

Q ss_pred             eEEEEECCCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           90 EFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ...++|++.+..|+.+. ..+.|..++++....                                       ....+...
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~---------------------------------------~~~v~~~~   82 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---------------------------------------VQNVVVSG   82 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------------------------------------------CEEEECSS
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc---------------------------------------eEEEEeCC
Confidence            46999998776665544 467888888764210                                       00122222


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC--CCeEEEEEecc
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRN  246 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~~~d~~~  246 (387)
                      ......+++.+.+++++++-...+.|.+.++.....  .......-.....|+++| .+..|.....  .+.|...++. 
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--~~l~~~~l~~P~~Iavdp-~~g~ly~tD~g~~~~I~r~~~d-  158 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMD-  158 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCCEEEET-TTTEEEEEECSSSCEEEEEETT-
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--EEEEeCCCCCCceEEEec-CCCeEEEeccCCCCEEEEEECC-
Confidence            346788999987657888888889999999876542  222223445678999999 5444444443  3566666655 


Q ss_pred             CCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          247 LTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       247 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                            +.....+ ...-...+.|++++++..|+++-...+.|...|+..
T Consensus       159 ------G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          159 ------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             ------SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             ------CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence                  3333333 222345789999998877888877888999999875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.24  E-value=0.0037  Score=59.14  Aligned_cols=224  Identities=8%  Similarity=0.031  Sum_probs=132.4

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-------ccCCCceEEEEECCCCCEEE
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-------GHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...|.++...+ +++ |..|+.++-|..||..+..            ......       +-....|.++...++++.|.
T Consensus       356 ~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lW  421 (795)
T 4a2l_A          356 DNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQR------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVY  421 (795)
T ss_dssp             CSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCC------------EEEECCC------CCSCSCEEEEEEETTTTEEE
T ss_pred             CCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCc------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEE
Confidence            45689998776 555 4456677679999987652            111110       11123688999988888566


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      .|+.++-|..+|..++........                              .    .  ......|.++...+++ .
T Consensus       422 igt~~~Gl~~~d~~~~~~~~~~~~------------------------------~----~--~l~~~~v~~i~~d~~g-~  464 (795)
T 4a2l_A          422 IGTHAGGLSILHRNSGQVENFNQR------------------------------N----S--QLVNENVYAILPDGEG-N  464 (795)
T ss_dssp             EEETTTEEEEEETTTCCEEEECTT------------------------------T----S--CCSCSCEEEEEECSSS-C
T ss_pred             EEeCcCceeEEeCCCCcEEEeecC------------------------------C----C--CcCCCeeEEEEECCCC-C
Confidence            667667799999875432110000                              0    0  0123568899888877 4


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEee-------ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      +.+ |+. +-+..||..+++   ...+.       .....|.++..++ ++.+.+. +.. -+..||..+      ... 
T Consensus       465 lwi-gt~-~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWig-t~~-Gl~~~~~~~------~~~-  529 (795)
T 4a2l_A          465 LWL-GTL-SALVRFNPEQRS---FTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIG-GEE-GLSVFKQEG------LDI-  529 (795)
T ss_dssp             EEE-EES-SCEEEEETTTTE---EEECCBCTTCCBCCCCCEEEEEECT-TCCEEEE-ESS-CEEEEEEET------TEE-
T ss_pred             EEE-Eec-CceeEEeCCCCe---EEEccccccccccCCceEEEEEECC-CCCEEEE-eCC-ceEEEeCCC------CeE-
Confidence            444 334 458889987654   22221       1235788998887 6665554 444 488888875      332 


Q ss_pred             EEec-------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc-CCCCeeEEE
Q 016547          257 NKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFH  328 (387)
Q Consensus       257 ~~~~-------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  328 (387)
                       .+.       .....|.++...++|.. .+ ++.. .|..||.....-.             ......+ ....|.++.
T Consensus       530 -~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wi-gT~~-Gl~~~d~~~~~~~-------------~~~~~~gl~~~~i~~i~  592 (795)
T 4a2l_A          530 -QKASILPVSNVTKLFTNCIYEASNGII-WV-GTRE-GFYCFNEKDKQIK-------------RYNTTNGLPNNVVYGIL  592 (795)
T ss_dssp             -EECCCSCSCGGGGSCEEEEEECTTSCE-EE-EESS-CEEEEETTTTEEE-------------EECGGGTCSCSCEEEEE
T ss_pred             -EEecCCCCCCCCCCeeEEEEECCCCCE-EE-EeCC-CceeECCCCCcEE-------------EeCCCCCCchhheEEEE
Confidence             221       23457999999999984 33 3334 5888887653111             0111111 134688888


Q ss_pred             EccCCCeEE
Q 016547          329 WNASDPWTV  337 (387)
Q Consensus       329 ~~~~~~~l~  337 (387)
                      ..++|...+
T Consensus       593 ~d~~g~lWi  601 (795)
T 4a2l_A          593 EDSFGRLWL  601 (795)
T ss_dssp             ECTTSCEEE
T ss_pred             ECCCCCEEE
Confidence            888887655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.22  E-value=8.8e-05  Score=68.44  Aligned_cols=73  Identities=16%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             EEEEecCCCCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-CC----
Q 016547           35 NRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KD----  108 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~-~d----  108 (387)
                      .++++.. ++++++.|+. ++.+.+||..+..-.          .+..+....  .-.+++..++++.++.|+ .+    
T Consensus       246 ~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~----------~~~~~~~~R--~~~s~~~~~dg~iyv~GG~~~~~~~  312 (656)
T 1k3i_A          246 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWI----------PGPDMQVAR--GYQSSATMSDGRVFTIGGSWSGGVF  312 (656)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEE----------ECCCCSSCC--SSCEEEECTTSCEEEECCCCCSSSC
T ss_pred             ccccCCC-CCCEEEeCCCCCCceEEecCcCCcee----------ECCCCCccc--cccceEEecCCeEEEEeCcccCCcc
Confidence            3456666 7888998884 568999998876211          111111111  113556667899999888 44    


Q ss_pred             -CeEEEEEcCCCc
Q 016547          109 -KSVVLWSIQDHI  120 (387)
Q Consensus       109 -~~i~vwd~~~~~  120 (387)
                       ..+.+||..+..
T Consensus       313 ~~~~e~yd~~t~~  325 (656)
T 1k3i_A          313 EKNGEVYSPSSKT  325 (656)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cccceEeCCCCCc
Confidence             568999987754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.21  E-value=0.00024  Score=65.53  Aligned_cols=54  Identities=11%  Similarity=-0.002  Sum_probs=36.7

Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +|.|..||+.+      ++.+-+.... .......+...+..+ ..++.|+.++.||.+++.
T Consensus       437 ~g~l~A~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v-f~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVK------QKAAWKVPYP-THWNGGTLSTAGNLV-FQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTT------TEEEEEEEES-SSCCCCEEEETTTEE-EEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCC------CcEEEEccCC-CCCcCceeEeCCCEE-EEECCcccchhhhhhcCh
Confidence            47899999988      7776666532 222333334456644 578899999999999853

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.20  E-value=0.00041  Score=62.69  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=36.6

Q ss_pred             CeEEEEEccCCCCceeEEeeccCC-------CeeEEEec-CCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~-------~i~~~~~~-~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      +.|.-+|.++++..-......|..       ...-+... . ++   ..++.++.+|.+.++|.++      ++.+...
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~  349 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTD------GALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTT------CCEEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEECCC------CCEeecc
Confidence            479999999988321122222211       11112222 3 56   5677788999999999988      6666544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.19  E-value=2.3e-05  Score=72.55  Aligned_cols=206  Identities=8%  Similarity=-0.036  Sum_probs=114.0

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCC-EEEEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~-~l~s~~~d~  109 (387)
                      ...+..|+|.+..+.++++-...+.|+.+++.+.....        .....+...-. ....|++.+.+. ++++-...+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--------~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~~  475 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLG  475 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C--------CCCCBCCSCC---CCCEECCCSSSBCEECCTTTS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc--------ceEEEEeCCCC-CcceEEEEeeCCcEEEEeccCC
Confidence            34567888888566666666667889999887521000        01111111111 124677775444 444445567


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      .|.+.++......                                        ..+.........|++.|.++.++++-.
T Consensus       476 ~I~v~d~dg~~~~----------------------------------------~l~~~~~~~P~giavDp~~g~ly~td~  515 (699)
T 1n7d_A          476 TVSVADTKGVKRK----------------------------------------TLFREQGSKPRAIVVDPVHGFMYWTDW  515 (699)
T ss_dssp             CEEEEBSSSCCEE----------------------------------------EECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred             eEEEEecCCCceE----------------------------------------EEEeCCCCCcceEEEccCCCcEEEccc
Confidence            8888887643111                                        011111223467888887645555543


Q ss_pred             CC-CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc---ccce
Q 016547          190 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAA  265 (387)
Q Consensus       190 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~~~~  265 (387)
                      .. +.|...++.....  .......-...+.|+++|..+.++++-+..+.|..+|+..       .....+..   .-..
T Consensus       516 ~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~~~  586 (699)
T 1n7d_A          516 GTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAH  586 (699)
T ss_dssp             SSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-------SCCEEECCCSSSCSS
T ss_pred             CCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-------CceEEEEecCCcCCC
Confidence            33 6788887765432  1112222345678999983455555555677899999864       22222211   1122


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ...|++..+  .|+++....+.|..++..++
T Consensus       587 P~glavd~~--~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          587 PFSLAVFED--KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             CCCCEEETT--EEEEECSTTTCEEEEETTTE
T ss_pred             ceEeEEECC--EEEEEeCCCCeEEEEEccCC
Confidence            345555443  57778778889999987653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.16  E-value=0.0015  Score=51.70  Aligned_cols=194  Identities=11%  Similarity=0.081  Sum_probs=119.4

Q ss_pred             eccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCC
Q 016547           83 TGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  161 (387)
Q Consensus        83 ~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (387)
                      .+-.+ .+..++|+|++..|+ +...++.|...|.. +...                                       
T Consensus        23 ~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~---------------------------------------   61 (255)
T 3qqz_A           23 AGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI---------------------------------------   61 (255)
T ss_dssp             TTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE---------------------------------------
T ss_pred             CCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE---------------------------------------
Confidence            34444 489999999876555 46667888888876 2211                                       


Q ss_pred             ceeec-CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC-ceeEEe------eccCCCeeEEEecCCCCCeEEEe
Q 016547          162 RGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE------KAHDADLHCVDWNPLDDNLILTG  233 (387)
Q Consensus       162 ~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~------~~~~~~i~~~~~~~~~~~~l~~~  233 (387)
                       ..+. .-....-.|++.+++ .++++.-.++.+.++++..... ......      .........|+|+| .++.|.++
T Consensus        62 -~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va  138 (255)
T 3qqz_A           62 -RTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFF  138 (255)
T ss_dssp             -EEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEE
T ss_pred             -EEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEE
Confidence             1111 112457788998887 6667766778899998866542 011111      12334568999999 77666666


Q ss_pred             eCCCeEEEEEeccCCCCCCCCceEEec-------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCC
Q 016547          234 SADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  306 (387)
Q Consensus       234 ~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~  306 (387)
                      .......+|.++....   ...+..+.       .+-..+.+++++|....+++.......+.++|....  ..      
T Consensus       139 ~E~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~------  207 (255)
T 3qqz_A          139 KEKNPIEVYKVNGLLS---SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VI------  207 (255)
T ss_dssp             EESSSEEEEEEESTTC---SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE------
T ss_pred             ECcCCceEEEEccccc---CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EE------
Confidence            6665556666652110   11222221       122356899999988888888888999999997752  11      


Q ss_pred             CCCCceeeeeec-cC------CCCeeEEEEccCCCeEE
Q 016547          307 TNYPAGLFFQHA-GH------RDKVVDFHWNASDPWTV  337 (387)
Q Consensus       307 ~~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~l~  337 (387)
                            ....+. +.      -.....|+|.++|...+
T Consensus       208 ------~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          208 ------GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             ------EEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             ------EEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence                  122222 11      13668999999997444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=0.00021  Score=62.06  Aligned_cols=157  Identities=11%  Similarity=0.142  Sum_probs=95.8

Q ss_pred             CeEEEEEcc-CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CC----eEEEEEe
Q 016547          171 TVEDVTFCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN----SVRMFDR  244 (387)
Q Consensus       171 ~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg----~i~~~d~  244 (387)
                      ....|+++| +++. |..+...+.|+.+|+....   +..+.........+++++ ++++|+++.. ++    .+..++.
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence            457889997 3424 4444444889999987765   333333456688999999 8885555554 22    2333443


Q ss_pred             ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCe
Q 016547          245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  324 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  324 (387)
                      ...     ......+.. ......++++|++.+|+++-..++.|..++.......             .+... +.....
T Consensus       213 ~g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-------------~~~~~-~~~~~P  272 (430)
T 3tc9_A          213 ESG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-------------PLFTI-QDSGWE  272 (430)
T ss_dssp             GGT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-------------EEEEC-SSSSCC
T ss_pred             CCc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------EEEEc-CCCCcc
Confidence            220     111122221 2234678899944447777777889999998753110             11111 122456


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..++|+|++++|+++-...       +.|..++.+
T Consensus       273 ~gia~~pdG~~lyv~d~~~-------~~I~~~~~d  300 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQ-------HYILRSDYD  300 (430)
T ss_dssp             EEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             eeEEEcCCCCEEEEEECCC-------CEEEEEeCC
Confidence            8899999999777755443       899998876

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.0032  Score=55.04  Aligned_cols=264  Identities=12%  Similarity=0.053  Sum_probs=140.2

Q ss_pred             cEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--CCceEEEEE-------CCCCCEE
Q 016547           33 EVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAM-------CPTEPYV  102 (387)
Q Consensus        33 ~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~-------~~~~~~l  102 (387)
                      ....|+|.|. .++++++....+.|++.|++++            ........-.  -.....++|       ++++++|
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~------------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l  207 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR------------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM  207 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT------------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC------------EEEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence            4578899983 4566666555567888888876            2222222211  113579999       9999977


Q ss_pred             EEecCCC-----e--EEEEEcCC-CcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEE
Q 016547          103 LSGGKDK-----S--VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  174 (387)
Q Consensus       103 ~s~~~d~-----~--i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  174 (387)
                      +.+...+     .  |.+.+... +....                                ......+..+    .....
T Consensus       208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~--------------------------------~~~~~~v~~~----~~p~g  251 (496)
T 3kya_A          208 IVAIDYDGKGDESPSVYIIKRNADGTFDD--------------------------------RSDIQLIAAY----KQCNG  251 (496)
T ss_dssp             EEEECCCTTGGGEEEEEEEECCTTSCCST--------------------------------TSCEEEEEEE----SCCCC
T ss_pred             EEEeCCCCCcccCceEEEEecCCCCceee--------------------------------cccceeeccC----CCceE
Confidence            7665543     2  44444221 00000                                0000011111    23457


Q ss_pred             EEEccCCCeeEEEecCCCeEEEEEcc-------CCCC-----ce----e-EEe-eccCCCeeEEEecCCCCCeEEEe-eC
Q 016547          175 VTFCPSSAQEFCSVGDDSCLILWDAR-------VGTS-----PV----I-KVE-KAHDADLHCVDWNPLDDNLILTG-SA  235 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~-----~~----~-~~~-~~~~~~i~~~~~~~~~~~~l~~~-~~  235 (387)
                      ++.+|+++.++++-..++.|..+|+.       ++..     +.    . ... .......+.|+|+| +++.|..+ +.
T Consensus       252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~  330 (496)
T 3kya_A          252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVIN  330 (496)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETT
T ss_pred             EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCC
Confidence            78899665778888888999999998       4542     00    1 111 12234568999999 88854444 45


Q ss_pred             CCeEEEEEeccCCCCCCCCc--eEEeccc---c------------ceEE-EEEEc-------CCCCeeEEEecCCCeEEE
Q 016547          236 DNSVRMFDRRNLTSNGVGSP--INKFEGH---S------------AAVL-CVQWS-------PDKSSVFGSSAEDGLLNI  290 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~--~~~~~~~---~------------~~i~-~~~~~-------~~~~~ll~s~~~d~~i~v  290 (387)
                      .+.|+.++.....    +..  ...+-+.   .            .... .++..       +++. |+++-..+.+|+.
T Consensus       331 ~h~I~kid~dg~~----~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~  405 (496)
T 3kya_A          331 NHYFMRSDYDEIK----KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRK  405 (496)
T ss_dssp             TTEEEEEEEETTT----TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEE
T ss_pred             CCEEEEEecCCCc----ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEE
Confidence            6788887765311    110  0111111   0            1233 44444       3444 6667777889999


Q ss_pred             EeCCCCCceeccCCCCC----------CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          291 WDYEKVGKKVEQGPRTT----------NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       291 wd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ++...  ..........          ...... ......-.....|++++++..|+++=+       .++.|+.+++..
T Consensus       406 i~~~G--~v~TiaG~g~~~~~~~~~~~G~~dG~-~~~~a~f~~P~gIavd~~~g~lyVaD~-------~N~rIrki~~~~  475 (496)
T 3kya_A          406 VTPEG--IVSTYAGRGASTSLADGNQWGTDDGD-LREVARFRDVSGLVYDDVKEMFYVHDQ-------VGHTIRTISMEQ  475 (496)
T ss_dssp             ECTTC--BEEEEEESCTTHHHHHSCSCCCCCEE-TTTTCCCSSEEEEEEETTTTEEEEEET-------TTTEEEEEEECC
T ss_pred             EeCCC--CEEEEecccccccccCccccccCCCC-chhhhhcCCCcEEEEECCCCEEEEEeC-------CCCEEEEEECCC
Confidence            98432  2111100000          000000 000111235689999997445555443       348999999983

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.15  E-value=0.0007  Score=55.39  Aligned_cols=215  Identities=8%  Similarity=0.044  Sum_probs=122.5

Q ss_pred             EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec-----cCCCceEEEEE---CCCCCEEEEec
Q 016547           35 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-----HQDNAEFALAM---CPTEPYVLSGG  106 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~~v~~~~~---~~~~~~l~s~~  106 (387)
                      .+++|.+.++.++++.-..|+|..||...+....           ..+.+     .....+..|.|   .|+++++++..
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-----------~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-----------VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-----------ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-----------EecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            5678888677777776689999999987552110           01111     11113478999   68877776533


Q ss_pred             -------------CCCeEEEEEcC---CCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC-CC
Q 016547          107 -------------KDKSVVLWSIQ---DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HE  169 (387)
Q Consensus       107 -------------~d~~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  169 (387)
                                   .+..|..+|+.   +++.........                           .... .+...+ -.
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~---------------------------~~~~-~~~~~g~~~  136 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK---------------------------VQDE-FEKKAGKRP  136 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH---------------------------HHHH-HHHHHSSCC
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc---------------------------cccc-ccccccccc
Confidence                         25778889987   443221110000                           0000 000001 11


Q ss_pred             CCeEEEEEccCCCeeEEEecCC-CeEEEEEccCCCCceeEEee-----ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEE
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDD-SCLILWDARVGTSPVIKVEK-----AHDADLHCVDWNPLDDNLILTGSADNSVRMFD  243 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d  243 (387)
                      .....++..++| +..++++.. +.|...+.....  ......     ......+.|+++| +++.|++....|.+.-+|
T Consensus       137 ~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          137 FGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             EEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEE
T ss_pred             cCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEc
Confidence            347899999998 778888877 887777765443  221111     1122367999999 888888887799999999


Q ss_pred             eccCCCCCCCCceEEe-ccc---cceEEE-EEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          244 RRNLTSNGVGSPINKF-EGH---SAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~-~~~---~~~i~~-~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ++.+.    ...+..- .+.   -..... +.--.+|+.++++....+.+.+.+-...
T Consensus       213 ~~~pv----~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          213 VSKPY----AWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             CSSSS----CCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTT
T ss_pred             CCCCc----ceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCc
Confidence            88521    1012111 011   111223 3434567765777767777777766553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.08  E-value=0.0059  Score=55.60  Aligned_cols=205  Identities=6%  Similarity=-0.031  Sum_probs=119.8

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d  108 (387)
                      .-+.+..++|.+.++.++.+-...+.|..++++...           .....+...-. ....+++.+.+..|+ +-...
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-----------~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~~  105 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-----------SVQNVVVSGLL-SPDGLACDWLGEKLYWTDSET  105 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CEEEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-----------ceEEEEeCCCC-CcCeEEEEecCCEEEEEeCCC
Confidence            445678999999677777776677889888887651           11122222212 357899998665554 44567


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +.|.+.+++.....                                        ......-.....|++.|.++.++.+-
T Consensus       106 ~~I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A          106 NRIEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             TEEEEEETTSCSCE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCCEE----------------------------------------EEEeCCCCCCceEEEecCCCeEEEec
Confidence            89999998743211                                        11112234467899998764666664


Q ss_pred             -cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceE
Q 016547          189 -GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAV  266 (387)
Q Consensus       189 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i  266 (387)
                       +..+.|...++....  ........-...+.|++++..++++++=...+.|..+|+..       .....+ .+.-...
T Consensus       146 ~g~~~~I~r~~~dG~~--~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG-------~~~~~~~~~~~~~P  216 (619)
T 3s94_A          146 WGEVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------TNRQAVVKGSLPHP  216 (619)
T ss_dssp             CSSSCEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC-------CEEC---------C
T ss_pred             cCCCCEEEEEECCCCc--eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC-------CccEEEEeCCCCCc
Confidence             234677777776544  12222233456789999983344444444567888888764       211111 1111122


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      .+|++..+  +++.+-...+.|...|..++.
T Consensus       217 ~gi~~~~~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          217 FALTLFED--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred             eEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence            46677655  577777778889999987644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.06  E-value=0.0015  Score=56.80  Aligned_cols=155  Identities=10%  Similarity=0.131  Sum_probs=92.6

Q ss_pred             EEEEECCC--CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           91 FALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        91 ~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ..++|+|+  +..|+.+...+.|+.+|..++..                                         ..+...
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----------------------------------------~~~~~~  180 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----------------------------------------DIKTTN  180 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----------------------------------------EEECCC
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----------------------------------------EEeecC
Confidence            58899984  44455544447888888764322                                         122223


Q ss_pred             CCCeEEEEEccCCCeeEEEecCC---C-eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDD---S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~  244 (387)
                      ......+++.+++ +++++....   . .+...+...... ....+. .......++++|.++.++++-..++.|+.+|.
T Consensus       181 ~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          181 IGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT-ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC-CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             CCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee-cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            4558899999999 555554321   1 233334332221 111222 33456788999844555555556788999988


Q ss_pred             ccCCCCCCCCceEEec--cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          245 RNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      .+      +.....+.  +....-..++|+|++++|+++-...+.|+.+++..
T Consensus       258 ~~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          258 AT------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             TT------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CC------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            75      43312221  11122346999999997787888889999988763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.05  E-value=0.0025  Score=52.61  Aligned_cols=123  Identities=11%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             CCeEEEEE--ccCCC-eeEEEecCCCeEEEEEccCC---C--CceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEE
Q 016547          170 DTVEDVTF--CPSSA-QEFCSVGDDSCLILWDARVG---T--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  241 (387)
Q Consensus       170 ~~v~~~~~--~~~~~-~~l~~~~~dg~i~iwd~~~~---~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~  241 (387)
                      ..+..+++  +|..+ .++++...+|.+..|++...   .  ...++.+. -.+.+..+..++ ....|..+-.+.-|..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADD-EYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcC-CCCeEEEecccceEEE
Confidence            45666777  66442 46788888999999998542   1  12344444 346788899998 7888899988866655


Q ss_pred             EEeccCCCCCCCCceEEec--cccceEEEEEE--cCCCC-eeEEEecCCCeEEEEeCCC
Q 016547          242 FDRRNLTSNGVGSPINKFE--GHSAAVLCVQW--SPDKS-SVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~--~~~~~i~~~~~--~~~~~-~ll~s~~~d~~i~vwd~~~  295 (387)
                      ++.+.... ...+.+..+.  .....+..|++  .++++ +||+++-.+....+||...
T Consensus       206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            55442110 0023443332  12246778877  55666 7888887789999999973

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.03  E-value=0.00097  Score=54.53  Aligned_cols=164  Identities=12%  Similarity=0.100  Sum_probs=104.6

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec----cC--CCeeEEEe---cCCCCCeEEEeeC----
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HD--ADLHCVDW---NPLDDNLILTGSA----  235 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~--~~i~~~~~---~~~~~~~l~~~~~----  235 (387)
                      ..--.+++|.+....++++.-..+.|..||...+..... .+..    ..  ..+..|.|   .| +++++++...    
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af   89 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF   89 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence            334457899886646666666899999999875542112 2221    11  13578999   68 7777776442    


Q ss_pred             ---------CCeEEEEEec---cCCCCCCCCceEEec--cc-----------cceEEEEEEcCCCCeeEEEecCC-CeEE
Q 016547          236 ---------DNSVRMFDRR---NLTSNGVGSPINKFE--GH-----------SAAVLCVQWSPDKSSVFGSSAED-GLLN  289 (387)
Q Consensus       236 ---------dg~i~~~d~~---~~~~~~~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~ll~s~~~d-~~i~  289 (387)
                               ++.|..||+.   +      ++.+....  ..           ......++..++|+ .+++++.. +.|.
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~  162 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIA  162 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEE
T ss_pred             cccccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEE
Confidence                     6789999998   6      55554432  11           13588999999998 46677777 7766


Q ss_pred             EEeCCCCCceeccCCCCCCCCceeeeee--ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          290 IWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      ..+....  ...          ......  .......+.++++|++..|++.-+        +|.|..+|+..+
T Consensus       163 rV~pdG~--~~~----------~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~--------~g~L~~fD~~~p  216 (334)
T 2p9w_A          163 RVSADGK--TVS----------TFAWESGNGGQRPGYSGITFDPHSNKLIAFGG--------PRALTAFDVSKP  216 (334)
T ss_dssp             EECTTSC--CEE----------EEEECCCCSSSCCSCSEEEEETTTTEEEEESS--------SSSEEEEECSSS
T ss_pred             EEeCCCC--EEe----------eeeecCCCcccccCcceEEEeCCCCEEEEEcC--------CCeEEEEcCCCC
Confidence            6665542  110          000000  112235789999999998887433        599999998843

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.03  E-value=0.0016  Score=58.89  Aligned_cols=62  Identities=23%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             CeEEEEEccCCCCceeEEeeccCC-------CeeEEEec-CCCC---CeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~-------~i~~~~~~-~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      +.|.-+|.++++..-......|..       ...-+... . ++   ..++.++.+|.++++|.++      ++.+..+.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~~~  363 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN------GKLQNAFP  363 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCC------CCEecccc
Confidence            689999999988321111222321       11112221 3 45   4788899999999999988      66655443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0071  Score=57.09  Aligned_cols=247  Identities=8%  Similarity=0.003  Sum_probs=137.6

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  110 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~  110 (387)
                      ...|.++...+ ++. |..|+.++-|..++.....-..-......    .....-....|.++...++|.+. .|+.++-
T Consensus       312 ~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~v~~i~~d~~g~lW-igt~~~G  384 (781)
T 3v9f_A          312 NASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ----MNESSLSNKVVSSVCDDGQGKLW-IGTDGGG  384 (781)
T ss_dssp             SSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----C----CCSSCCSSSCEEEEEECTTSCEE-EEEBSSC
T ss_pred             CCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccc----cccCCCCCcceEEEEEcCCCCEE-EEeCCCc
Confidence            45788888776 554 44556566688888765521000000000    00011122368899998887654 4454556


Q ss_pred             EEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecC
Q 016547          111 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  190 (387)
Q Consensus       111 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  190 (387)
                      |..++..+........                                     ........|.++...+++ . |..|+.
T Consensus       385 l~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~v~~i~~d~~g-~-lWigt~  425 (781)
T 3v9f_A          385 INVFENGKRVAIYNKE-------------------------------------NRELLSNSVLCSLKDSEG-N-LWFGTY  425 (781)
T ss_dssp             EEEEETTEEEEECC------------------------------------------CCCSBEEEEEECTTS-C-EEEEET
T ss_pred             EEEEECCCCeEEEccC-------------------------------------CCCCCCcceEEEEECCCC-C-EEEEec
Confidence            8888876432110000                                     001124568888887776 4 445666


Q ss_pred             CCeEEEEEccCCCCceeEEee---ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc-----
Q 016547          191 DSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----  262 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-----  262 (387)
                      ++-+..+|..+++   ...+.   .....|.++...+ ++. |..|+. +-|..||..+      .+........     
T Consensus       426 ~~Gl~~~~~~~~~---~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~  493 (781)
T 3v9f_A          426 LGNISYYNTRLKK---FQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLL  493 (781)
T ss_dssp             TEEEEEECSSSCE---EEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSS------SSCCEEECTTTSSCS
T ss_pred             cCCEEEEcCCCCc---EEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCC------CeEEecccCcccccc
Confidence            6779999887655   22221   2346788888887 555 445555 4588888775      3322221111     


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec-cCCCCeeEEEEccCCCeEEEEec
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      ...|.++...++|.. . .|+.++.+..||........             ..... -....|.++...++|...+.+  
T Consensus       494 ~~~i~~i~~d~~g~l-W-igt~~~Gl~~~~~~~~~~~~-------------~~~~~~l~~~~i~~i~~d~~g~lWi~T--  556 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRF-W-IGTFGGGVGIYTPDMQLVRK-------------FNQYEGFCSNTINQIYRSSKGQMWLAT--  556 (781)
T ss_dssp             CSCEEEEEECTTCCE-E-EEESSSCEEEECTTCCEEEE-------------ECTTTTCSCSCEEEEEECTTSCEEEEE--
T ss_pred             cceeEEEEEcCCCCE-E-EEEcCCCEEEEeCCCCeEEE-------------ccCCCCCCCCeeEEEEECCCCCEEEEE--
Confidence            357899999999983 4 34444447778876531110             00000 123468889888888765532  


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                             .+|.|..||..
T Consensus       557 -------~~Glv~~~d~~  567 (781)
T 3v9f_A          557 -------GEGLVCFPSAR  567 (781)
T ss_dssp             -------TTEEEEESCTT
T ss_pred             -------CCCceEEECCC
Confidence                   13554777765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.01  E-value=0.0043  Score=51.24  Aligned_cols=170  Identities=7%  Similarity=0.111  Sum_probs=99.6

Q ss_pred             CCeEEEEEccC----CCe--e-EEEecC--CCeEEEEEccCCCCceeEEeec------cC-CCeeEEEe--cCCCCC-eE
Q 016547          170 DTVEDVTFCPS----SAQ--E-FCSVGD--DSCLILWDARVGTSPVIKVEKA------HD-ADLHCVDW--NPLDDN-LI  230 (387)
Q Consensus       170 ~~v~~~~~~~~----~~~--~-l~~~~~--dg~i~iwd~~~~~~~~~~~~~~------~~-~~i~~~~~--~~~~~~-~l  230 (387)
                      +.++.+..-|.    +..  + +++.-.  +++|.+|++.....+ +.....      .. ..+..+++  +|..+. ++
T Consensus        68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ya  146 (355)
T 3amr_A           68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYA  146 (355)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEE
T ss_pred             CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEE
Confidence            45666665552    111  2 333334  689999977422211 333311      12 56777888  773343 68


Q ss_pred             EEeeCCCeEEEEEeccCCCC-CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCC
Q 016547          231 LTGSADNSVRMFDRRNLTSN-GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  309 (387)
Q Consensus       231 ~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  309 (387)
                      ++...+|.+..|++...... ...+.++++.. .+.+..+...+....|+ .+-++..|..++.+.....          
T Consensus       147 fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~----------  214 (355)
T 3amr_A          147 MVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGS----------  214 (355)
T ss_dssp             EEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCS----------
T ss_pred             EEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCC----------
Confidence            88888999999999542110 11466777763 45788888888877666 6667766666664432100          


Q ss_pred             Cceeeeeec-cC-CCCeeEEEE--ccCCC-eEEEEecCCCCCCCCCceEEEEecC
Q 016547          310 PAGLFFQHA-GH-RDKVVDFHW--NASDP-WTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       310 ~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....+.... ++ ...+..|++  .++++ ||++++-.+       +++.+||..
T Consensus       215 ~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-------~s~~Vydr~  262 (355)
T 3amr_A          215 NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-------SSYAIYDRQ  262 (355)
T ss_dssp             CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-------TEEEEEESS
T ss_pred             CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC-------CEEEEEECC
Confidence            012233221 22 236888888  45555 788776444       799999996

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.95  E-value=0.0025  Score=57.57  Aligned_cols=54  Identities=19%  Similarity=0.105  Sum_probs=34.9

Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +|.|..||..+      ++.+-++... ..+....+...+..++ .++.|+.|+.||.++++
T Consensus       443 ~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTTCC
T ss_pred             CCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCCCC
Confidence            47888888887      7776666422 2222222223345454 68889999999998863

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.88  E-value=0.0079  Score=54.40  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=34.2

Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      +|.|..||+.+      ++.+-+.... .++..-.....+..+ ..++.|+.++.||.++++
T Consensus       465 ~G~l~A~D~~t------G~~~W~~~~~-~~~~~g~~~tagglv-f~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVS------GKVVWEHKEH-LPLWAGVLATAGNLV-FTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTT------CCEEEEEEES-SCCCSCCEEETTTEE-EEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCC------CCEEEEecCC-CCCcccceEeCCCEE-EEECCCCcEEEEECCCCC
Confidence            57888889888      7766655422 122111111234434 468899999999999863

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.87  E-value=0.019  Score=54.23  Aligned_cols=254  Identities=10%  Similarity=0.052  Sum_probs=136.7

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE------eccCCCceEEEEECCCCCEEEE
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL------TGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ...|.++...+ ++. |..|+..+-|.++|..+.....-..     .....+      .+-....|.++...++|.. -.
T Consensus       257 ~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-----~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wi  328 (781)
T 3v9f_A          257 SSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQ-----IRFEFIREGDNNYSLSNASARYIFQDSFNNI-WI  328 (781)
T ss_dssp             CCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC--------------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EE
T ss_pred             CceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeec-----cccccccCCCCCCCCCCCeEEEEEEeCCCCE-EE
Confidence            35688888766 555 4445554458888887652110000     000000      0112236889999888864 44


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      |+.++-|..++............                             ....  .........|.++...+++ . 
T Consensus       329 gt~~~Gl~~~~~~~~~~~~~~~~-----------------------------~~~~--~~~~l~~~~v~~i~~d~~g-~-  375 (781)
T 3v9f_A          329 GTWGGGINFISNAPPTFHTWSYS-----------------------------PTQM--NESSLSNKVVSSVCDDGQG-K-  375 (781)
T ss_dssp             EEBSSCEEEECSSCCSCEEEC---------------------------------CC--CSSCCSSSCEEEEEECTTS-C-
T ss_pred             EecCCeEEEeCCCCCcceeeccC-----------------------------cccc--ccCCCCCcceEEEEEcCCC-C-
Confidence            55566778887764322110000                             0000  0000123568899888777 4 


Q ss_pred             EEEecCCCeEEEEEccCCCCceeE-EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec---
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---  260 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---  260 (387)
                      +-.|+.++-|..||..+....... ........|.++...+ ++. |..|+.++-+..+|..+      ++ +..+.   
T Consensus       376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~------~~-~~~~~~~~  446 (781)
T 3v9f_A          376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRL------KK-FQIIELEK  446 (781)
T ss_dssp             EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSS------CE-EEECCSTT
T ss_pred             EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCC------Cc-EEEeccCC
Confidence            555665667888987654311000 0012345788888876 555 45577766788888765      32 22222   


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec---cCCCCeeEEEEccCCCeEE
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---GHRDKVVDFHWNASDPWTV  337 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~  337 (387)
                      .....|.++...+++. |. .|+. +.|..||.....-..             .....   .....|.++...++|...+
T Consensus       447 ~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~~i~~d~~g~lWi  510 (781)
T 3v9f_A          447 NELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKVIH-------------HYDTSNSQLLENFVRSIAQDSEGRFWI  510 (781)
T ss_dssp             TCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSCCE-------------EECTTTSSCSCSCEEEEEECTTCCEEE
T ss_pred             CCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeEEe-------------cccCcccccccceeEEEEEcCCCCEEE
Confidence            1346789999888887 44 3444 568889877532110             00000   1135788999988887665


Q ss_pred             EEecCCCCCCCCCceEEEEecC
Q 016547          338 VSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       338 ~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .+.         ++-|..|+..
T Consensus       511 gt~---------~~Gl~~~~~~  523 (781)
T 3v9f_A          511 GTF---------GGGVGIYTPD  523 (781)
T ss_dssp             EES---------SSCEEEECTT
T ss_pred             EEc---------CCCEEEEeCC
Confidence            321         1236667765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=0.0013  Score=57.46  Aligned_cols=171  Identities=9%  Similarity=0.092  Sum_probs=98.8

Q ss_pred             CeEEEEEccC-CCeeEEEecCCCeEEEEEccCCCCceeEEeec---cCCCeeEEEe-------cCCCCCeEEEeeCCC--
Q 016547          171 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHCVDW-------NPLDDNLILTGSADN--  237 (387)
Q Consensus       171 ~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~~l~~~~~dg--  237 (387)
                      ....|+|.|. .++++++....+.|++.|+..+.  .......   .......|+|       ++ +++.|+++...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence            4678999983 43566665555778899988766  2222221   1235789999       99 888666666554  


Q ss_pred             -----eEEEEEeccCCCCCCCC--c-eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCC-------CCCc--ee
Q 016547          238 -----SVRMFDRRNLTSNGVGS--P-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-------KVGK--KV  300 (387)
Q Consensus       238 -----~i~~~d~~~~~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~-------~~~~--~~  300 (387)
                           .|.+++......   ..  . ...+... .....++++|++.+|+++-..++.|..+|+.       ....  +.
T Consensus       217 ~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          217 GDESPSVYIIKRNADGT---FDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GGGEEEEEEEECCTTSC---CSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cccCceEEEEecCCCCc---eeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                 255665332000   11  0 0122211 1235788899777788888889999999997       3211  00


Q ss_pred             ccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ....  . .....+... +.......++|+|++++|+++-+..       +.|+.++.+
T Consensus       293 ~~~~--~-g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~d  340 (496)
T 3kya_A          293 VKNN--P-NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYD  340 (496)
T ss_dssp             GGGC--T-TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             cccc--c-cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecC
Confidence            0000  0 000112222 2234568999999999766654433       789887765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.83  E-value=0.0032  Score=56.95  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=32.8

Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      +|.|..||+.+      ++.+-+... ..+...-.+...+..+| .++.|+.++.||.++++.
T Consensus       452 ~G~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          452 LGQIKAYNAIT------GDYKWEKME-RFAVWGGTMATAGDLVF-YGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             CEEEEEECTTT------CCEEEEEEE-SSCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCE
T ss_pred             cCeEEEEECCC------CCEEeEecC-CCCccCcceEecCCEEE-EECCCCeEEEEECCCCCE
Confidence            46777788777      666555531 11111111122345444 688899999999998643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.80  E-value=0.02  Score=52.29  Aligned_cols=202  Identities=4%  Similarity=-0.084  Sum_probs=126.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE-EecCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d  108 (387)
                      .-..+..|+|.+.++.++++-..++.|..++++..            .....+..... ....+++.+.+..|+ +-...
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~------------~~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~~  101 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS------------ALEHVVEFGLD-YPEGMAVDWLGKNLYWADTGT  101 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEECSSCS-CCCEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC------------CcEEEEeCCCC-CcceEEEEeCCCEEEEEECCC
Confidence            34568899999977777888778899999988765            22222222111 235788877655554 44456


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +.|.+.+++.....                                        ......-.....|++.|..+.++.+-
T Consensus       102 ~~I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A          102 NRIEVSKLDGQHRQ----------------------------------------VLVWKDLDSPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             TEEEEEETTSTTCE----------------------------------------EEECSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEecCCCcEE----------------------------------------EEEeCCCCCcccEEEccCCCeEEEeC
Confidence            78888887642110                                        11112234568999998654666654


Q ss_pred             -cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-eCCCeEEEEEeccCCCCCCCCceEEeccccceE
Q 016547          189 -GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  266 (387)
Q Consensus       189 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i  266 (387)
                       +..+.|...++.....   ..+...-.....|++++ ++..|..+ ...+.|..+|+..      ... ..+...-...
T Consensus       142 ~g~~~~I~r~~~dG~~~---~~l~~~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG------~~~-~v~~~~l~~P  210 (628)
T 4a0p_A          142 WGGKPKIDRAAMDGSER---TTLVPNVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLG------LNR-EVIADDLPHP  210 (628)
T ss_dssp             CSSSCEEEEEETTSCSC---EEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTS------CSC-EEEEECCSCE
T ss_pred             CCCCCEEEEEeCCCCce---EEEECCCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCC------Cce-EEeeccCCCc
Confidence             3367888888876552   22223455788999999 55555544 4567899998874      222 2232222344


Q ss_pred             EEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          267 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       267 ~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                      ..+++..  .+++++-...+.|...|..++.
T Consensus       211 ~glav~~--~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          211 FGLTQYQ--DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEC--CEEEEecCCCCEEEEEECCCCC
Confidence            5777765  3577787778999999876543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.77  E-value=0.037  Score=54.28  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             ecCCCcEEEEEecCC-----CCcEEEEecC-CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC--CCC
Q 016547           28 IIHPGEVNRIRELPQ-----NTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTE   99 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~-----~~~~l~t~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~--~~~   99 (387)
                      ..-.++|.|+++.|.     ..+++|.|.. |++|+|+++.+.+...          ...+...  ....++.+.  ...
T Consensus       550 ~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~----------~~~L~~~--~~p~si~l~~~~~~  617 (1158)
T 3ei3_A          550 TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH----------KEMLGGE--IIPRSILMTTFESS  617 (1158)
T ss_dssp             EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE----------EEECCSS--CCEEEEEEEEETTE
T ss_pred             cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE----------EEECCCC--CCCcEEEEEEeCCC
Confidence            344678999998763     2479999986 9999999998652111          1112110  112233222  234


Q ss_pred             CEEEEecCCCeEEEEEcC
Q 016547          100 PYVLSGGKDKSVVLWSIQ  117 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~  117 (387)
                      .+|..|-.||.+.-+.++
T Consensus       618 ~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          618 HYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             EEEEEEETTSEEEEEEEC
T ss_pred             cEEEEEeCCCeEEEEEEc
Confidence            578888899998777664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.45  E-value=0.037  Score=45.99  Aligned_cols=158  Identities=13%  Similarity=0.128  Sum_probs=81.9

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      ...+..+.+.+++ .+++.+...+..+-.|-........  .......+..+.+.+ ++..+ .++.+|.+++.+.....
T Consensus       162 ~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          162 IGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             CCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEE
T ss_pred             CcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCC
Confidence            4567889999987 6666665444344444211221111  223456788899988 66655 55568887776321100


Q ss_pred             CCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          249 SNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       249 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                      .   ...+..- ......+.++++.+++. +++++. +|.| .+..+.+..            ...+.........+.++
T Consensus       237 t---W~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~t------------W~~~~~~~~~~~~~~~v  298 (327)
T 2xbg_A          237 N---WGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQT------------WQQDVDVKKVPSNFYKI  298 (327)
T ss_dssp             E---ECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSS------------CEECGGGTTSSSCCCEE
T ss_pred             e---eEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcc------------cEEcCccCCCCCCeEEE
Confidence            0   2221110 01223588899998776 555554 6666 333333211            01111111223567888


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      .|.+++. ++        .+|.+|.|.-++-
T Consensus       299 ~~~~~~~-~~--------~~G~~G~i~~~~~  320 (327)
T 2xbg_A          299 LFFSPDQ-GF--------ILGQKGILLRYVT  320 (327)
T ss_dssp             EEEETTE-EE--------EECSTTEEEEECC
T ss_pred             EEECCCc-eE--------EEcCCceEEEEcC
Confidence            8875444 44        3345587766653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.42  E-value=0.036  Score=45.32  Aligned_cols=104  Identities=11%  Similarity=0.116  Sum_probs=54.5

Q ss_pred             eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCCCC
Q 016547          183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  252 (387)
Q Consensus       183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~  252 (387)
                      .+++.|+.+     ..+.+||+.+.+...+..... ...-.++...  ++.+++.|+.+     ..+..||..+..    
T Consensus       114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  186 (301)
T 2vpj_A          114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH----  186 (301)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence            677777643     368899988776433332221 1111222222  57788887765     457888877522    


Q ss_pred             CCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547          253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV  296 (387)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  296 (387)
                      ...+..+.........+.+  ++ .|++.|+.+     ..+.+||+.+.
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCC
Confidence            2222222111111122222  34 366677654     46889998763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.38  E-value=0.027  Score=46.37  Aligned_cols=104  Identities=11%  Similarity=0.090  Sum_probs=53.2

Q ss_pred             eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCCCC
Q 016547          183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  252 (387)
Q Consensus       183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~  252 (387)
                      .+++.|+.+     ..+.+||+.+.+............. .+++..  ++.+++.|+.+     ..+..||..+..    
T Consensus       123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~----  195 (308)
T 1zgk_A          123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE----  195 (308)
T ss_dssp             EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence            677777643     3588899887663222222111111 122222  56777777765     457888877532    


Q ss_pred             CCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547          253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV  296 (387)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  296 (387)
                      ...+..+......-..+.+  +++ |++.|+.+     ..+.+||+.+.
T Consensus       196 W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCC
Confidence            2222211111111122222  344 66677654     45889998763

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.38  E-value=0.041  Score=45.05  Aligned_cols=104  Identities=10%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             eeEEEecCCC-----eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-------CeEEEEEeccCCCC
Q 016547          183 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDRRNLTSN  250 (387)
Q Consensus       183 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~  250 (387)
                      .+++.|+.++     .+.+||+.+.+...+..... ...-.+++..  ++.+++.|+.+       ..+..||..+..  
T Consensus       110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--  184 (302)
T 2xn4_A          110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-RRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--  184 (302)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred             EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-cccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence            6777776543     57788888766432222211 1111222222  56777777653       347888887522  


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV  296 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  296 (387)
                        ...+..+.........+.+  ++. |++.|+.+     ..+.+||+.+.
T Consensus       185 --W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          185 --WTYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTT
T ss_pred             --EEECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCC
Confidence              2222222111111122222  344 66677654     36888998763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.21  E-value=0.065  Score=43.91  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             eeEEEecCC------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC---------CCeEEEEEeccC
Q 016547          183 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNL  247 (387)
Q Consensus       183 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~  247 (387)
                      .+++.|+.+      ..+.+||..+.+......... ...-.+++..  ++.+++.|+.         -..+.+||..+.
T Consensus       103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            677777755      458899988776432222211 1111122222  5677777764         344778888763


Q ss_pred             CCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547          248 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV  296 (387)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  296 (387)
                      .    ...+..+......-..+.+  +++ |++.|+.+     ..+.+||+.+.
T Consensus       180 ~----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          180 T----WTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             E----EEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTTT
T ss_pred             e----EEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCCC
Confidence            2    2222222111111112222  344 66677643     35888888763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.20  E-value=0.072  Score=44.21  Aligned_cols=107  Identities=9%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe--ccCC
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR--RNLT  248 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~--~~~~  248 (387)
                      .+..+.+.+++ ..++.+. +|.|.. ..+.++ .-..........+..+.+.| ++.+++++...+..+-.|-  .+  
T Consensus       123 ~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~-tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~t--  195 (327)
T 2xbg_A          123 SPRLIKALGNG-SAEMITN-VGAIYR-TKDSGK-NWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTA--  195 (327)
T ss_dssp             CEEEEEEEETT-EEEEEET-TCCEEE-ESSTTS-SEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSS--
T ss_pred             CeEEEEEECCC-CEEEEeC-CccEEE-EcCCCC-CCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCc--
Confidence            46677777666 6666554 554422 112222 11222234456788999998 7777766644333333332  12  


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                          .+.+.  ......+..+++.+++. ++ ..+.+|.+++.+
T Consensus       196 ----W~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          196 ----WEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD  231 (327)
T ss_dssp             ----CEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred             ----eeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence                33332  23456788999999987 44 344578877764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.079  Score=44.30  Aligned_cols=160  Identities=11%  Similarity=0.091  Sum_probs=90.9

Q ss_pred             CeEEEEEccCCCeeEEEec------------CCCeEEEEEccCCCCce-eEEeec-----cCCCeeEEEecCC-CC--Ce
Q 016547          171 TVEDVTFCPSSAQEFCSVG------------DDSCLILWDARVGTSPV-IKVEKA-----HDADLHCVDWNPL-DD--NL  229 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~-~~~~~~-----~~~~i~~~~~~~~-~~--~~  229 (387)
                      ..-++...|+| ..+++++            .+|.|.++|..+..... ...+.+     ..-....+.+.+. ++  .+
T Consensus        51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            44566778877 5555542            68999999997532111 112222     2235677777541 23  24


Q ss_pred             EEEeeC--CCeEEEEEeccCCCCCCCCceEEeccc-cceEEEEEEcCCCCeeEEEecC-----------------CCeEE
Q 016547          230 ILTGSA--DNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAE-----------------DGLLN  289 (387)
Q Consensus       230 l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ll~s~~~-----------------d~~i~  289 (387)
                      +++-..  +..|.+|++.....  ....+..+.+. -...+.+++.++|++ +++...                 .|.|.
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEE
Confidence            444333  56888988875210  01223334322 235789999999984 445431                 13343


Q ss_pred             EEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          290 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       290 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      -+|...                  +..+...-...+.++|+||++.+.++-+..       +.|..|++.
T Consensus       207 r~d~~~------------------~~~~~~~l~~pNGia~spDg~~lYvadt~~-------~~I~~~~~~  251 (355)
T 3sre_A          207 YYSPND------------------VRVVAEGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKH  251 (355)
T ss_dssp             EECTTC------------------CEEEEEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEEC
T ss_pred             EEECCe------------------EEEeecCCcccCcceECCCCCEEEEEeCCC-------CeEEEEEEC
Confidence            333311                  111112223569999999999998866544       899999987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.08  Score=44.26  Aligned_cols=145  Identities=7%  Similarity=-0.027  Sum_probs=84.1

Q ss_pred             CeEEEEEcc--CCC-eeEEEecC--CCeEEEEEccCCCC--ceeEEeec-cCCCeeEEEecCCCCCeEEEeeC-------
Q 016547          171 TVEDVTFCP--SSA-QEFCSVGD--DSCLILWDARVGTS--PVIKVEKA-HDADLHCVDWNPLDDNLILTGSA-------  235 (387)
Q Consensus       171 ~v~~~~~~~--~~~-~~l~~~~~--dg~i~iwd~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~-------  235 (387)
                      ....+.+.+  ++. +++++-..  +..|.+|++.....  .....+.+ .-...+.+.+.+ ++.+.++...       
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            456677655  342 24444333  56788888776432  12222222 124578899999 8887776541       


Q ss_pred             ----------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCC
Q 016547          236 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       236 ----------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~  305 (387)
                                .|.|..+|.        ++ +..+...-...+.++|+||++.++++-+..+.|..|++...+...     
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--------~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~-----  257 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT-----  257 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--------TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-----
T ss_pred             ccchhhccCCccEEEEEEC--------Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe-----
Confidence                      234444432        22 222221223468999999999888888888999999997532211     


Q ss_pred             CCCCCceeeeeeccCCCCeeEEEEcc-CCCeEEE
Q 016547          306 TTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVV  338 (387)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  338 (387)
                             ....+ ...+..-.++..+ +|...++
T Consensus       258 -------~~~~~-~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          258 -------PLRVL-SFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             -------EEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred             -------cCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence                   11111 1235667888888 4775553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.15  E-value=0.087  Score=44.24  Aligned_cols=247  Identities=10%  Similarity=0.054  Sum_probs=121.6

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCC---CCEEEE
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVLS  104 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~---~~~l~s  104 (387)
                      .-.....|+|.| +++++++ ..+|.|++++  ++..          ..+..+.  .........|+++|+   +..|..
T Consensus        29 ~l~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~----------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv   94 (352)
T 2ism_A           29 GLEVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRL----------STYAELSVYHRGESGLLGLALHPRFPQEPYVYA   94 (352)
T ss_dssp             CCSCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEE----------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred             CCCCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCc----------cEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence            345578999999 7776666 4569999988  3310          1111111  011123579999998   555554


Q ss_pred             ecC-C-----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec---CCCCCeEEE
Q 016547          105 GGK-D-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN---GHEDTVEDV  175 (387)
Q Consensus       105 ~~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~  175 (387)
                      +.. .     +.|..++....... ...                                 ..+..+.   ........+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~-~~~---------------------------------~l~~~~p~~~~~~h~~~~l  140 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGV-LDR---------------------------------VVLDGIPARPHGLHSGGRI  140 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEE-EEE---------------------------------EEEEEECCCTTCCCCCCCE
T ss_pred             EEecCCCCCccEEEEEEeCCCCcC-ceE---------------------------------EEEEeCCCCCCCCcCCceE
Confidence            432 2     56777776532100 000                                 0000011   111123579


Q ss_pred             EEccCCCeeEEEecC-------------CCeEEEEEccCC------------CCceeEEeeccCCCeeEEEecCCCCCeE
Q 016547          176 TFCPSSAQEFCSVGD-------------DSCLILWDARVG------------TSPVIKVEKAHDADLHCVDWNPLDDNLI  230 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l  230 (387)
                      +|.|+| .++++.+.             .|.|.-++....            ....+ ...++ .....++|+|.++.++
T Consensus       141 ~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G~-rnp~g~a~d~~~g~l~  217 (352)
T 2ism_A          141 AFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEV-YSLGH-RNPQGLAWHPKTGELF  217 (352)
T ss_dssp             EECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTE-EEECC-SEECCCEECTTTCCEE
T ss_pred             EECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccE-EEEcC-CCcccEEEECCCCCEE
Confidence            999998 66665432             256666665431            00111 11222 3467889998445544


Q ss_pred             EEeeCCCeE------EEEEeccCCC------------CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEe
Q 016547          231 LTGSADNSV------RMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  292 (387)
Q Consensus       231 ~~~~~dg~i------~~~d~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd  292 (387)
                      ++-...+.+      .+.-+....+            .....++..+..| .....++| .+|. ++++.-..+.|...+
T Consensus       218 v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~-l~v~~~~~~~v~~v~  294 (352)
T 2ism_A          218 SSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGD-LYVAGLRGQALLRLV  294 (352)
T ss_dssp             EEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTE-EEEEETTTTEEEEEE
T ss_pred             EEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCE-EEEEECCCCEEEEEE
Confidence            443322321      1222222110            0001234444323 34567888 4555 566666778888888


Q ss_pred             CCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEE
Q 016547          293 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  339 (387)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s  339 (387)
                      +.........         .....+......+..+++.|+|..++++
T Consensus       295 ~~~~~~~~~~---------~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          295 LEGERGRWRV---------LRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             EEEETTEEEE---------EEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             ECCCCcceee---------cchheecccCCCeeEEEECCCCcEEEEE
Confidence            7653221000         0011111223578999999999755543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.13  E-value=0.092  Score=44.09  Aligned_cols=105  Identities=13%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      ..++|.|+|+++++ ..+|.|.+++  ++........                                   ........
T Consensus        34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~-----------------------------------~v~~~g~~   75 (352)
T 2ism_A           34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAEL-----------------------------------SVYHRGES   75 (352)
T ss_dssp             EEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEEC-----------------------------------CCCCSTTC
T ss_pred             eEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecc-----------------------------------eEeecCCC
Confidence            69999999985555 5569999888  2211000000                                   00111234


Q ss_pred             CeEEEEEccC---CCeeEEEecCC-----CeEEEEEccCCCC----ceeEEee---ccCCCeeEEEecCCCCCeEEEee
Q 016547          171 TVEDVTFCPS---SAQEFCSVGDD-----SCLILWDARVGTS----PVIKVEK---AHDADLHCVDWNPLDDNLILTGS  234 (387)
Q Consensus       171 ~v~~~~~~~~---~~~~l~~~~~d-----g~i~iwd~~~~~~----~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~  234 (387)
                      ....|+++|+   ++.++++-...     +.|..++......    .....+.   ........++|.| ++.++++-+
T Consensus        76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A           76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            6789999998   43555554432     6788888764321    1111122   1112346899999 887666643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.04  E-value=0.12  Score=43.91  Aligned_cols=230  Identities=13%  Similarity=0.215  Sum_probs=137.8

Q ss_pred             CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCccc
Q 016547           52 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        52 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      .+.+|.|-|+..+.            ....-.-..+    +.-.+|..+.++.-. ..++.++|+++.....        
T Consensus        46 ~~~~vvIiDl~~~~------------~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klk--------  100 (494)
T 1bpo_A           46 EQAQVVIIDMNDPS------------NPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK--------  100 (494)
T ss_dssp             TCCEEEEEETTSTT------------SCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEE--------
T ss_pred             CCCeEEEEECCCCC------------cceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhc--------
Confidence            34489999998873            2211122222    455677777776554 6899999998653221        


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  211 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  211 (387)
                                                      .+. ..+.|.-=.|-.+.  .|+..+ +..|+-|++..... ..+.+.
T Consensus       101 --------------------------------s~~-~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~-P~kvFd  143 (494)
T 1bpo_A          101 --------------------------------AHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFD  143 (494)
T ss_dssp             --------------------------------EEE-CSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCC-CEEEEE
T ss_pred             --------------------------------cee-cCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCC-chhhee
Confidence                                            111 13456666776654  344443 46899999976443 344444


Q ss_pred             cc----CCCeeEEEecCCCCCeEEEeeC-------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC--Cee
Q 016547          212 AH----DADLHCVDWNPLDDNLILTGSA-------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK--SSV  278 (387)
Q Consensus       212 ~~----~~~i~~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l  278 (387)
                      .|    ...|..-..++ +.++++..+-       .|.+.+|..+       .+.-+.+++|...-..+.+..+.  ..+
T Consensus       144 R~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~l  215 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTL  215 (494)
T ss_dssp             CCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEEST-------TCCEEEECCSEEEEEEEECTTCSSEEEE
T ss_pred             cchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecc-------ccccchheeeeeeeEEEecCCCCCCceE
Confidence            43    34566677788 7777775542       4778899888       46777888887766555553221  235


Q ss_pred             EEEecC---CCeEEEEeCCCCCceeccCCCCCCCCce---eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCce
Q 016547          279 FGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAG---LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  352 (387)
Q Consensus       279 l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~  352 (387)
                      |+-+..   .++++|-++.......      ...+.+   +.+......+-..++..++....+.+....        |.
T Consensus       216 f~fa~r~~~g~kLhi~Ei~~~~~~~------~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~--------G~  281 (494)
T 1bpo_A          216 FCFAVRGQAGGKLHIIEVGTPPTGN------QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY--------GY  281 (494)
T ss_dssp             EEEEECSTTCCEEEEEECSCCCTTC------CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT--------SE
T ss_pred             EEEEEecCCCcEEEEEEcCCCccCC------CCccceeeeeeCCcccccCceeEEEecccCCEEEEEecC--------ce
Confidence            554443   3789999996531110      001111   111112334566788888888776654433        89


Q ss_pred             EEEEecCCCcccccchhhh
Q 016547          353 LQIWRMSDLIYRPQDEVLA  371 (387)
Q Consensus       353 i~iw~~~~~~~~~~~~~~~  371 (387)
                      |++||+.      ++.++-
T Consensus       282 i~lyDle------Tgt~i~  294 (494)
T 1bpo_A          282 IHLYDLE------TGTCIY  294 (494)
T ss_dssp             EEEEETT------TCCEEE
T ss_pred             EEEEecc------cceeee
Confidence            9999999      666554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.02  E-value=0.09  Score=42.91  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=54.3

Q ss_pred             CCCeeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCC
Q 016547          180 SSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTS  249 (387)
Q Consensus       180 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~  249 (387)
                      ++ .+++.|+.+     ..+.+||+.+.+...+..... ...-.++...  ++.+++.|+.+     ..+.+||+.+.. 
T Consensus       159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-  233 (301)
T 2vpj_A          159 SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-  233 (301)
T ss_dssp             TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-
T ss_pred             CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-
Confidence            44 677777654     458899988776432222211 1111122222  56788888764     468889987632 


Q ss_pred             CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547          250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  295 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~  295 (387)
                         ...+..+.........+.+  +++ |++.|+.+     ..+.+||+.+
T Consensus       234 ---W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          234 ---WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             ---EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred             ---EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence               2222222111111122222  444 66677654     3577787765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.93  E-value=0.15  Score=43.28  Aligned_cols=123  Identities=13%  Similarity=0.171  Sum_probs=78.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee---
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---  165 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  165 (387)
                      .|..+..+|+|++||..+ +..|.|-.+..+.........     ..                      ..+ ...+   
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~-----~~----------------------~~q-~~ty~l~  117 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI-----QD----------------------AFQ-IFHYSID  117 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH-----HH----------------------TTE-EEEEEGG
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc-----cc----------------------ccc-eeEEEcC
Confidence            367899999999999887 568999988743211100000     00                      000 0011   


Q ss_pred             ---cCCCCCeEEEEEccCCC--eeEEEecCCCeEEEEEccCCCCceeEEe---------eccCCCeeEEEecCCCCCeEE
Q 016547          166 ---NGHEDTVEDVTFCPSSA--QEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLIL  231 (387)
Q Consensus       166 ---~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~l~  231 (387)
                         .....+|..+.|+|-+.  ..|++-..|+.|++||+........ .+         ......|.+++|.+ ++-.|.
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLY  195 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLY  195 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEE
Confidence               11357899999999753  3788888999999999986332112 11         12235788999998 787777


Q ss_pred             Eee--CCCeEEEE
Q 016547          232 TGS--ADNSVRMF  242 (387)
Q Consensus       232 ~~~--~dg~i~~~  242 (387)
                      ..+  ..|.|+-.
T Consensus       196 vl~~t~~GDIYAl  208 (452)
T 3pbp_A          196 CLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             EEecCCCCCEEEE
Confidence            755  77887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.83  E-value=0.17  Score=42.42  Aligned_cols=249  Identities=9%  Similarity=0.051  Sum_probs=122.7

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe--ccCCCceEEEEECCC---CCEEE
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVL  103 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~~~~---~~~l~  103 (387)
                      .--.....|+|.| +++++++ ..+|.|++++. ++.  .         .+..+.  .........|+++|+   +..|.
T Consensus        26 ~~l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d~-~G~--~---------~~~~~~v~~~g~~g~~gia~~pdf~~~g~ly   91 (354)
T 3a9g_A           26 SDLEVPWSIAPLG-GGRYLVT-ERPGRLVLISP-SGK--K---------LVASFDVANVGEAGLLGLALHPEFPKKSWVY   91 (354)
T ss_dssp             CSCSCEEEEEEEE-TTEEEEE-ETTTEEEEECS-SCE--E---------EEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCCCCCeEEEEcC-CCeEEEE-eCCCEEEEEeC-CCc--e---------EeeccceeecCCCceeeEEeCCCCCcCCEEE
Confidence            3345678999999 7886666 45699998873 331  1         111110  111123579999997   55554


Q ss_pred             EecC----C----CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc-eeec-CCCCCeE
Q 016547          104 SGGK----D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIYN-GHEDTVE  173 (387)
Q Consensus       104 s~~~----d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~  173 (387)
                      .+..    +    ..|..|+.........                                 ..+.+ ..+. .......
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~---------------------------------~~~~l~~~~~~~~~h~~~  138 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLK---------------------------------EVKTLIDGIPGAYIHNGG  138 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEE---------------------------------EEEEEEEEEECCSSCCCC
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcC---------------------------------ccEEEEEcCCCCCCcCCc
Confidence            4332    2    4666666553210000                                 00000 0011 1111246


Q ss_pred             EEEEccCCCeeEEEecC-------------CCeEEEEEccCCC---C---ceeEEeeccCCCeeEEEecCCCCCeEEEee
Q 016547          174 DVTFCPSSAQEFCSVGD-------------DSCLILWDARVGT---S---PVIKVEKAHDADLHCVDWNPLDDNLILTGS  234 (387)
Q Consensus       174 ~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~---~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  234 (387)
                      .|.|.|+| .++++.+.             .|.|.-++....-   .   .......++ .....++|+|.+++++++-.
T Consensus       139 ~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~  216 (354)
T 3a9g_A          139 RIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEH  216 (354)
T ss_dssp             CEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEEC
T ss_pred             eEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEec
Confidence            78999998 66665432             2456666654320   0   001112233 34578999994445444432


Q ss_pred             CCC---eEEEEEeccCC----------CCCCCCceEEeccccceEEEEEEc-------CCCCeeEEEecCCCeEEEEeCC
Q 016547          235 ADN---SVRMFDRRNLT----------SNGVGSPINKFEGHSAAVLCVQWS-------PDKSSVFGSSAEDGLLNIWDYE  294 (387)
Q Consensus       235 ~dg---~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~ll~s~~~d~~i~vwd~~  294 (387)
                      ..+   .|.+......-          ......++..+.........++|.       .+|. ++++.-..+.|...++.
T Consensus       217 g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          217 GPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             CSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEEC
T ss_pred             CCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEEC
Confidence            222   23332211000          000012344442123457788883       4565 56666677888888887


Q ss_pred             CCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          295 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      ..+....           ....+.+....+..+++.|+|..+++
T Consensus       296 ~~g~~~~-----------~~~~~~~~~~rp~~v~~~pDG~lyv~  328 (354)
T 3a9g_A          296 DNMEVRK-----------ISTFFKNVFGRLRDVVIDDDGGILIS  328 (354)
T ss_dssp             GGGCEEE-----------EEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred             CCCcccc-----------eeeeccCCCCCeeEEEECCCCcEEEE
Confidence            5322110           01112222457899999999965443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.81  E-value=0.099  Score=42.82  Aligned_cols=103  Identities=13%  Similarity=0.143  Sum_probs=53.2

Q ss_pred             eeEEEecC---------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCC
Q 016547          183 QEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLT  248 (387)
Q Consensus       183 ~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~  248 (387)
                      .+++.|+.         -..+.+||+.+.+...+..... ...-.++...  ++.+++.|+.+     ..+.+||..+..
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            66777653         3458899998876432222111 1111222222  56777777754     357888887632


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  295 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~  295 (387)
                          ...+..+.........+.+  +++ |++.|+.+     ..+.+||+..
T Consensus       228 ----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          228 ----WKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             ----EEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTT
T ss_pred             ----EEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCC
Confidence                2222222211111222333  344 66677743     4578888776

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.75  E-value=0.061  Score=43.99  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             eeEEEecCC-------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCC
Q 016547          183 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSN  250 (387)
Q Consensus       183 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  250 (387)
                      .+++.|+.+       ..+.+||+.+.+...+..... ...-.++...  ++.+++.|+.+     ..+.+||..+..  
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--  231 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA--  231 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence            677776642       458899998776433222211 1111222222  57788888765     368888887622  


Q ss_pred             CCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC-----eEEEEeCCC
Q 016547          251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK  295 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~-----~i~vwd~~~  295 (387)
                        ...+..+.........+.+  +++ |++.|+.++     .+.+||+.+
T Consensus       232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCC
Confidence              2222222111111112222  444 666776543     478888876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.71  E-value=0.31  Score=48.22  Aligned_cols=233  Identities=14%  Similarity=0.217  Sum_probs=129.0

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS  132 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  132 (387)
                      ..+|.|-|+..+....+       ++   +  ..    -+.-.+|..+.++.-+ ..++.|+|+++.......       
T Consensus        47 ~~~vvIidl~~~~~~~r-------rp---i--~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~-------  102 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIR-------RP---I--SA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-------  102 (1630)
T ss_pred             CceEEEEECCCCCCccc-------cc---c--cc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhccc-------
Confidence            34788999888632110       11   1  11    1334567666666544 679999999865332211       


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547          133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  212 (387)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  212 (387)
                                                        ....+|.-=.|-...  .++..+ +..|.-|++..... ..+.+..
T Consensus       103 ----------------------------------~~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~-P~k~fdR  144 (1630)
T 1xi4_A          103 ----------------------------------TMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFDR  144 (1630)
T ss_pred             ----------------------------------ccCCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCc-cHHHHhc
Confidence                                              113456666676554  344433 46899999975332 3333333


Q ss_pred             c----CCCeeEEEecCCCCCeEEEee-------CCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc--CCCCeeE
Q 016547          213 H----DADLHCVDWNPLDDNLILTGS-------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVF  279 (387)
Q Consensus       213 ~----~~~i~~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll  279 (387)
                      |    ...|..-..++ +.++++..+       ..|.+.+|....       +.-+.+++|.+.-..+...  +....+|
T Consensus       145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEE
Confidence            3    45566677788 777776544       358899998874       4555667776554444432  2222345


Q ss_pred             EEecC---CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEE
Q 016547          280 GSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  356 (387)
Q Consensus       280 ~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw  356 (387)
                      +.+..   .++++|-++.......   +.-......+.+......+-..++..++....+.+...        -|.|.+|
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk--------~G~~~~~  285 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--------YGYIHLY  285 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCC---CCCccccccccCCcccccCcceEEEeccccCEEEEEec--------CceEEEE
Confidence            43322   3789999986531110   00000011112222223445567888887776664333        3899999


Q ss_pred             ecCCCcccccchhhhh
Q 016547          357 RMSDLIYRPQDEVLAE  372 (387)
Q Consensus       357 ~~~~~~~~~~~~~~~~  372 (387)
                      |+.      ++.++-.
T Consensus       286 d~~------t~~~i~~  295 (1630)
T 1xi4_A          286 DLE------TGTCIYM  295 (1630)
T ss_pred             ecc------cchhhhh
Confidence            999      6666543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.59  E-value=0.24  Score=40.75  Aligned_cols=104  Identities=9%  Similarity=0.048  Sum_probs=52.9

Q ss_pred             eeEEEecCC--------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-C-----CeEEEEEeccCC
Q 016547          183 QEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D-----NSVRMFDRRNLT  248 (387)
Q Consensus       183 ~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~  248 (387)
                      .+++.|+.+        ..+.+||..+.+.......... ..-.+++. - ++.+++.|+. +     ..+.+||..+..
T Consensus       100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV-VYGHTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc-ccceeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            677777732        4588999887663222222111 11122222 2 5678888876 2     468888887632


Q ss_pred             CCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC-----eEEEEeCCCC
Q 016547          249 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEKV  296 (387)
Q Consensus       249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~-----~i~vwd~~~~  296 (387)
                          ...+..+......-..+.+  +++ |++.|+.++     .+.+||+.+.
T Consensus       177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTT
T ss_pred             ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCC
Confidence                2222222111111112222  444 666776543     4788888763

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.40  E-value=0.16  Score=42.67  Aligned_cols=51  Identities=14%  Similarity=0.019  Sum_probs=27.9

Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC------CCeEEEEEe
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDR  244 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i~~~d~  244 (387)
                      ..+.+||..+.++..+.........-.+++..  ++.+++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            57899999887754333322111111233333  5677777764      235667776

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.30  E-value=0.17  Score=41.43  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=52.4

Q ss_pred             eeEEEecCC-----CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEeccCCCCCC
Q 016547          183 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  252 (387)
Q Consensus       183 ~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~  252 (387)
                      .+++.|+.+     ..+.+||+.+.+...+..... ...-.++...  ++.+++.|+.+     ..+.+||+.+..    
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~----  242 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET----  242 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence            677777654     458899988766322222111 1111222222  56788888765     458888887632    


Q ss_pred             CCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCC
Q 016547          253 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  295 (387)
Q Consensus       253 ~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~  295 (387)
                      ...+..+.........+.+  +++ |++.|+.+     ..+.+||+.+
T Consensus       243 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred             EEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCC
Confidence            2222222111111112222  344 66677643     3467777765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.25  E-value=0.46  Score=40.41  Aligned_cols=139  Identities=13%  Similarity=0.071  Sum_probs=82.3

Q ss_pred             CCeEEEEEccCCCCceeEEeec----cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCC------CCceEEec
Q 016547          191 DSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV------GSPINKFE  260 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~~~  260 (387)
                      ++.||.-++.....  .+.+..    ....|..+..+| +|++||..+ +..|.+..+........      .-..+.+.
T Consensus        40 ~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~  115 (452)
T 3pbp_A           40 DNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYS  115 (452)
T ss_dssp             TTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEE
T ss_pred             CCEEEEEECCCCCc--ceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEE
Confidence            47888888775432  223222    123688999999 999999885 45688888773211100      01122332


Q ss_pred             c------ccceEEEEEEcCCCCe--eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          261 G------HSAAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       261 ~------~~~~i~~~~~~~~~~~--ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                      -      ...+|..+.|+|-+..  -|++-..|+.|++||+........ ...   .. ...+........|.+++|.++
T Consensus       116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~---k~-~~~fg~d~~~~ev~S~~Fg~~  190 (452)
T 3pbp_A          116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN---KP-NNSFGLDARVNDITDLEFSKD  190 (452)
T ss_dssp             GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES---CC-CSEEESCSSCCCEEEEEECTT
T ss_pred             cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh---cc-ccccCCCcccceEEEEEEcCC
Confidence            1      2467999999996432  355777899999999997321111 000   00 011233344568899999996


Q ss_pred             CCeEEE
Q 016547          333 DPWTVV  338 (387)
Q Consensus       333 ~~~l~~  338 (387)
                      +=.|.+
T Consensus       191 ~lTLYv  196 (452)
T 3pbp_A          191 GLTLYC  196 (452)
T ss_dssp             SSCEEE
T ss_pred             CcEEEE
Confidence            644443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.22  E-value=0.45  Score=39.91  Aligned_cols=106  Identities=15%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      -..++|.|+|+++++ ..+|.|.+++. ++. ......                                   .......
T Consensus        31 P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~-----------------------------------~v~~~g~   72 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASF-----------------------------------DVANVGE   72 (354)
T ss_dssp             EEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEEC-----------------------------------CCCCSTT
T ss_pred             CeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeecc-----------------------------------ceeecCC
Confidence            369999999985554 55699988863 221 000000                                   0011123


Q ss_pred             CCeEEEEEccC---CCeeEEEecC---C----CeEEEEEccCCC-----Cc-eeEEee-ccCCCeeEEEecCCCCCeEEE
Q 016547          170 DTVEDVTFCPS---SAQEFCSVGD---D----SCLILWDARVGT-----SP-VIKVEK-AHDADLHCVDWNPLDDNLILT  232 (387)
Q Consensus       170 ~~v~~~~~~~~---~~~~l~~~~~---d----g~i~iwd~~~~~-----~~-~~~~~~-~~~~~i~~~~~~~~~~~~l~~  232 (387)
                      .....|+++|+   ++.++++-+.   +    ..|..|+.....     .. ....+. ........|+|.| ++.++++
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence            45789999997   4355555432   3    567777766541     00 111122 1112356899999 8887776


Q ss_pred             ee
Q 016547          233 GS  234 (387)
Q Consensus       233 ~~  234 (387)
                      -+
T Consensus       152 ~G  153 (354)
T 3a9g_A          152 TG  153 (354)
T ss_dssp             CC
T ss_pred             EC
Confidence            44

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.19  E-value=0.46  Score=39.80  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQ  117 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~  117 (387)
                      -..|+|.|+|++|+.+...|.|++++..
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            3699999999944445567999988753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.15  E-value=1.2  Score=44.00  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=70.6

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      .+.|++++-. +| ++++..  ...|++|++...+  .+.....+-..|..+.... .++++++|..-..|.++..+.. 
T Consensus       885 ~g~v~al~~~-~g-~Lla~i--g~~l~vy~l~~~~--~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~-  956 (1158)
T 3ei3_A          885 KGAVYSMVEF-NG-KLLASI--NSTVRLYEWTTEK--ELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPM-  956 (1158)
T ss_dssp             SSCEEEEEEE-TT-EEEEEE--TTEEEEEEECTTS--CEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETT-
T ss_pred             CCcCEEEeee-CC-EEEEEc--CCEEEEEECCCCc--eEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcC-
Confidence            5678887754 23 544443  4789999997655  2221111222244333333 5789999998888888776542 


Q ss_pred             CCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCC
Q 016547          249 SNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       249 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                          ...+..+  ......++++.|-.++.  ++.+..+|.+.+.....
T Consensus       957 ----~~~L~~~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          957 ----EGNFEEIARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ----TTEEEEEEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECT
T ss_pred             ----CCeEEEEEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCC
Confidence                2222222  23456788998876654  45788899999998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.78  E-value=1.8  Score=43.17  Aligned_cols=197  Identities=13%  Similarity=0.128  Sum_probs=108.4

Q ss_pred             cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547           40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  119 (387)
Q Consensus        40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  119 (387)
                      +| ..+++|-=. ..++.|+|+++.            ..+....-...  |.-=.|-.+... +-.+ +..|.-|++...
T Consensus        74 nP-~~~iiALra-g~~lQiFnl~~k------------~klks~~~~e~--VvfWkWis~~~l-~lVT-~~aVyHW~~~~~  135 (1630)
T 1xi4_A           74 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDD--VTFWKWISLNTV-ALVT-DNAVYHWSMEGE  135 (1630)
T ss_pred             CC-CcceEEEec-CCeEEEeehHHh------------hhhcccccCCC--ceEEEecCCCee-EEEc-CCeEEEeccCCC
Confidence            55 556776654 678999999988            34444444332  444455544433 3222 468999999641


Q ss_pred             cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC----CCCeEEEEEccCCCeeEEEec------
Q 016547          120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------  189 (387)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------  189 (387)
                      .                                       .|...+..|    ...|..-..+++...++++|-      
T Consensus       136 s---------------------------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~  176 (1630)
T 1xi4_A          136 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (1630)
T ss_pred             C---------------------------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCc
Confidence            1                                       112222222    244656666676634444432      


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEec--CCCCCeEEEeeC---CCeEEEEEeccC-CCCC-CCCc-eEEecc
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSA---DNSVRMFDRRNL-TSNG-VGSP-INKFEG  261 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~---dg~i~~~d~~~~-~~~~-~~~~-~~~~~~  261 (387)
                      -.|.+.+|.++.+.   ...+.+|......+...  +....+++.+..   .+.+++.++... ...+ ..+. +..+..
T Consensus       177 v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~  253 (1630)
T 1xi4_A          177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (1630)
T ss_pred             ccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence            45889999987765   34556666655444442  212233333322   278999998654 1111 0111 111111


Q ss_pred             ---ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCC
Q 016547          262 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  297 (387)
Q Consensus       262 ---~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~  297 (387)
                         -..-..++..++.... +..-+.-|.|++||+.++.
T Consensus       254 ~~~~~Dfpv~~~vs~k~g~-iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             cccccCcceEEEeccccCE-EEEEecCceEEEEecccch
Confidence               1223446777777664 4466779999999999863

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.65  E-value=0.9  Score=38.84  Aligned_cols=196  Identities=12%  Similarity=0.106  Sum_probs=115.0

Q ss_pred             cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547           40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  119 (387)
Q Consensus        40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  119 (387)
                      +| ..+++|-=. ..++.|+|+++.            ..+....-..+  |.-=.|-.+.. |+-.+ +..|.-|++...
T Consensus        74 nP-~~~iiALra-g~~lQiFnle~K------------~klks~~~~e~--VvfWkWis~~~-l~lVT-~taVyHWsi~~~  135 (494)
T 1bpo_A           74 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDD--VTFWKWISLNT-VALVT-DNAVYHWSMEGE  135 (494)
T ss_dssp             CS-SSSCEEEEE-TTEEEEEETTTT------------EEEEEEECSSC--CCEEEEEETTE-EEEEC-SSEEEEEESSSS
T ss_pred             CC-CCcEEEEec-CCeEEEEchHHh------------hhhcceecCCC--ceEEEecCCCe-EEEEc-CCeeEEecccCC
Confidence            66 566776654 578999999998            44445544443  43455554433 33333 568999999641


Q ss_pred             cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC----CCCeEEEEEccCCCeeEEEec------
Q 016547          120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------  189 (387)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------  189 (387)
                      .                                       .+.+.+..|    ...|..-..+++...++++|-      
T Consensus       136 s---------------------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  176 (494)
T 1bpo_A          136 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (494)
T ss_dssp             C---------------------------------------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred             C---------------------------------------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence            1                                       122333332    245666666777744444432      


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeEEEeeCC---CeEEEEEeccCC-C-CCCCCceEEec--
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD---NSVRMFDRRNLT-S-NGVGSPINKFE--  260 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d---g~i~~~d~~~~~-~-~~~~~~~~~~~--  260 (387)
                      -.|.+.+|..+.+.   ...+.+|......+.....  ...+++.+...   +.+++.++.... . .+..+....+.  
T Consensus       177 v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp  253 (494)
T 1bpo_A          177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (494)
T ss_dssp             EEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             ccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence            24788999988765   5667777766655555321  12344444443   789999987541 1 11111111111  


Q ss_pred             --cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          261 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       261 --~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                        .-.+-..++..++.... +..-+.-|.|++||+.++
T Consensus       254 pe~~~DFPvamqvs~kygv-iyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             TTSTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTC
T ss_pred             cccccCceeEEEecccCCE-EEEEecCceEEEEecccc
Confidence              11334457888887774 446778999999999996

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.53  E-value=0.9  Score=38.03  Aligned_cols=69  Identities=12%  Similarity=0.045  Sum_probs=40.5

Q ss_pred             eEEeccccceEEEEEEcC-------CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547          256 INKFEGHSAAVLCVQWSP-------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~-------~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                      +..+..| ..+..++|..       ++. ++++.-..+.|...++... ....           ....+......+..++
T Consensus       264 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~-~~~~-----------~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          264 VFYWKDS-PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGD-KVTE-----------DGRILTDRGQRIRDVR  329 (353)
T ss_dssp             SEEESSC-CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETT-EEEE-----------EEEESGGGCCCEEEEE
T ss_pred             eEEeCCC-cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCC-eEee-----------eEEcccCCCCceeEEE
Confidence            3344433 4567888864       354 5666667788888887742 2110           0111122335789999


Q ss_pred             EccCCCeEEE
Q 016547          329 WNASDPWTVV  338 (387)
Q Consensus       329 ~~~~~~~l~~  338 (387)
                      +.|+|..+++
T Consensus       330 ~~pdG~lyv~  339 (353)
T 2g8s_A          330 TGPDGYLYVL  339 (353)
T ss_dssp             ECTTSCEEEE
T ss_pred             ECCCCcEEEE
Confidence            9999985553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.47  E-value=0.62  Score=35.71  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=39.8

Q ss_pred             eEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee-----EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEE
Q 016547          172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI-----KVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  240 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~  240 (387)
                      ..++.|.|++ .+.++  .||.|+-++.-+......     ..-...=..+..|.+.| ++.+.++.  |+.++
T Consensus        90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~ly  157 (236)
T 1tl2_A           90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFY  157 (236)
T ss_dssp             CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred             ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEE
Confidence            4788899998 65555  569998887533221111     11111114678999999 88888777  77743

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.44  E-value=0.95  Score=37.67  Aligned_cols=110  Identities=10%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      -..|+|.|+|..+++--..|.|++++..++........                                  -..+....
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~----------------------------------~~v~~~g~   79 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV----------------------------------PGVSPSGE   79 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------------------TTCCCBTT
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc----------------------------------CceeecCC
Confidence            47999999999777765589999887543321100000                                  00112234


Q ss_pred             CCeEEEEEccC---CCeeEEEe--cCCCeEEEEEccCCC--------Cce-eEEee-ccCCCeeEEEecCCCCCeEEEee
Q 016547          170 DTVEDVTFCPS---SAQEFCSV--GDDSCLILWDARVGT--------SPV-IKVEK-AHDADLHCVDWNPLDDNLILTGS  234 (387)
Q Consensus       170 ~~v~~~~~~~~---~~~~l~~~--~~dg~i~iwd~~~~~--------~~~-~~~~~-~~~~~i~~~~~~~~~~~~l~~~~  234 (387)
                      .....|+++|+   ++.++++-  ..++.|.-|.+....        ... +..+. ........|.|.| ++.++++.+
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G  158 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG  158 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence            56889999995   32454432  245566666665421        111 11121 1122346799999 888777754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.42  E-value=0.9  Score=37.28  Aligned_cols=104  Identities=10%  Similarity=0.087  Sum_probs=50.8

Q ss_pred             eeEEEecCC-------CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC------CeEEEEEeccCCC
Q 016547          183 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTS  249 (387)
Q Consensus       183 ~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~  249 (387)
                      .+++.|+.+       ..+.+||..+.+........... .-.+++. . ++.+++.|+.+      ..+.+||..+.. 
T Consensus       111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-  186 (318)
T 2woz_A          111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-YGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGD-  186 (318)
T ss_dssp             EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE-ESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred             EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc-cccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence            677777653       34788888876632222111110 1112222 2 67777777642      358888887632 


Q ss_pred             CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCC
Q 016547          250 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKV  296 (387)
Q Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~  296 (387)
                         ...+..+.........+.+  +++ |++.|+.+     ..+.+||+.+.
T Consensus       187 ---W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          187 ---WKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             ---EEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTC
T ss_pred             ---EEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCC
Confidence               2222222111111112222  344 56666543     34778888763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.35  E-value=1.3  Score=38.62  Aligned_cols=28  Identities=14%  Similarity=0.109  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQ  117 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~  117 (387)
                      -..|+|.|+|+++++-...+.|.+++..
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~   56 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPE   56 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence            4699999999977765544578877654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.06  E-value=1.5  Score=40.60  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CCCeeEEEecCCC--eEEEEEccCCCCceeEE---eeccCCCeeEEEecCCCCCeEEEeeC--C-----CeEEEEEecc
Q 016547          180 SSAQEFCSVGDDS--CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSA--D-----NSVRMFDRRN  246 (387)
Q Consensus       180 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~--d-----g~i~~~d~~~  246 (387)
                      ++ .+++.|+.++  .+.+||..+..+.....   .........++.+....+.+++.|+.  +     +.+..||+.+
T Consensus       500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence            44 6777777654  68999998876432221   11112222335555523678888876  2     4588899887

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.92  E-value=0.87  Score=37.36  Aligned_cols=63  Identities=16%  Similarity=0.361  Sum_probs=35.0

Q ss_pred             CCCeeEEEecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----CeEEEEEecc
Q 016547          180 SSAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRN  246 (387)
Q Consensus       180 ~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~  246 (387)
                      ++ .+++.|+.      -..+.+||+.+.+...+..... ...-.+++..  ++.+++.|+.+     ..+.+||..+
T Consensus       158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             TT-EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             CC-EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence            44 67777764      2458999998876432222211 1111223332  56777777654     3466788775

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.88  E-value=0.11  Score=39.70  Aligned_cols=110  Identities=5%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCcee----EEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEec
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI----KVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  245 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~  245 (387)
                      .+..++|+|++ .+.++  .+|.+.-.+..+......    ..+-. --....++.|+| ++.+.++  .||.|+-++-.
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence            67799999988 65555  778777766644321110    11100 001147889999 8888877  56988777643


Q ss_pred             cCCCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEE
Q 016547          246 NLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  289 (387)
Q Consensus       246 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~  289 (387)
                      +.........-..+ ..-=..+..|.|.|+|. |.|..  |+.+.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly  157 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY  157 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence            21110000000111 10113578999999997 55444  77754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.86  E-value=1.8  Score=37.69  Aligned_cols=112  Identities=10%  Similarity=0.137  Sum_probs=60.7

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCC---CCeEEEeeC----
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLD---DNLILTGSA----  235 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~---~~~l~~~~~----  235 (387)
                      -...+.|+|.|+| .++++-...+.|++++...+....+..+..      ....+..|+++| +   +..|.++..    
T Consensus        26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecccc
Confidence            4567899999998 666655444578888765554222222211      245677999999 5   444544432    


Q ss_pred             ---------CCeEEEEEeccCCCC-CCCCceE-Eecc-ccceEEEEEEcCCCCeeEEEec
Q 016547          236 ---------DNSVRMFDRRNLTSN-GVGSPIN-KFEG-HSAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       236 ---------dg~i~~~d~~~~~~~-~~~~~~~-~~~~-~~~~i~~~~~~~~~~~ll~s~~  283 (387)
                               ...|.-|+....... ...+.+. .+.. .......|+|.|+|.. +++.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L-yv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI-YYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE-EEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE-EEEEC
Confidence                     134555555421000 0011111 1221 1234689999999984 44543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.43  E-value=1.7  Score=35.52  Aligned_cols=61  Identities=10%  Similarity=0.156  Sum_probs=35.1

Q ss_pred             eeEEEecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC-----eEEEEEecc
Q 016547          183 QEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRN  246 (387)
Q Consensus       183 ~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~  246 (387)
                      .+++.|+.      -..+.+||+.+.+...+..... ...-.+++..  ++.+++.|+.++     .+.+||..+
T Consensus       150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence            67777765      2468899988776432222211 1111222222  567888887654     477888776

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.16  E-value=2.1  Score=35.58  Aligned_cols=255  Identities=11%  Similarity=0.117  Sum_probs=128.1

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEE----eccCCCceEEEEECCC---
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCPT---   98 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~v~~~~~~~~---   98 (387)
                      ....--...+.|+|.| +++++++--..|.|++++..++..          ..+..+    ..... ....|+++|+   
T Consensus        26 ~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~----------~~v~~~~~v~~~g~~-GllGia~~Pdf~~   93 (347)
T 3das_A           26 TVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK----------TELGEVPGVSPSGEG-GLLGIALSPDYAS   93 (347)
T ss_dssp             EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE----------EEEEECTTCCCBTTB-SEEEEEECTTHHH
T ss_pred             EeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE----------eeecccCceeecCCC-CceeeEecccccc
Confidence            3334456789999999 888888866589999988655421          011111    11122 3579999995   


Q ss_pred             CCEEEEe---cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCc-eee---cCCCCC
Q 016547           99 EPYVLSG---GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIY---NGHEDT  171 (387)
Q Consensus        99 ~~~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~  171 (387)
                      +.+|...   ..++.|.-|.+........                              .....+.+ ..+   ..|  .
T Consensus        94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~------------------------------~~~~~~~i~~~~p~~~~H--~  141 (347)
T 3das_A           94 DHMVYAYFTSASDNRIVRMLYDEKKPSGE------------------------------QLGAPDTVFRGIPKGVIH--N  141 (347)
T ss_dssp             HCEEEEEEECSSSEEEEEEEBCTTSCTTC------------------------------CBCCCEEEEEEECCCSSC--C
T ss_pred             CCEEEEEEecCCCCEEEEEEeCCCCcccc------------------------------cCCCcEEEEEcCCCCCCc--c
Confidence            3444332   2344555555443110000                              00000000 011   123  3


Q ss_pred             eEEEEEccCCCeeEEEecC-------------CCeEEEEEccCCC---Cc---eeEEeeccCCCeeEEEecCCCCCeEEE
Q 016547          172 VEDVTFCPSSAQEFCSVGD-------------DSCLILWDARVGT---SP---VIKVEKAHDADLHCVDWNPLDDNLILT  232 (387)
Q Consensus       172 v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~  232 (387)
                      ...|.|.|+| .++++.+.             .|.|.-.+....-   .+   ......+| .....++|+| ++.++++
T Consensus       142 g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp-~G~L~~~  218 (347)
T 3das_A          142 GGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDD-KQRLFAS  218 (347)
T ss_dssp             CCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECT-TCCEEEE
T ss_pred             CccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECC-CCCEEEE
Confidence            4679999998 66666432             3455555544220   00   01112233 3467899999 7776655


Q ss_pred             ee-CCCeEEEEEeccCCC------------CCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCce
Q 016547          233 GS-ADNSVRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  299 (387)
Q Consensus       233 ~~-~dg~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~  299 (387)
                      =. .|+.=.|.-+....+            .....++..+..+......++|.. +. +|...-..+.|....+...+. 
T Consensus       219 d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~-  295 (347)
T 3das_A          219 EFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAA-  295 (347)
T ss_dssp             ECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEE-
T ss_pred             ecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCce-
Confidence            32 233222222222111            011234445543334567788864 44 565666666676666654211 


Q ss_pred             eccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      ..          .....+.+....+.+++..|||..++++-
T Consensus       296 ~~----------~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          296 AA----------DPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             SS----------CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ec----------ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            00          00112234456899999999987665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.41  E-value=1.9  Score=36.00  Aligned_cols=22  Identities=9%  Similarity=0.086  Sum_probs=15.4

Q ss_pred             CCcEEEEecC-C---------CcEEEEeccCC
Q 016547           43 NTKIVATHTD-S---------PDVLIWDVEAQ   64 (387)
Q Consensus        43 ~~~~l~t~~~-d---------g~v~iwd~~~~   64 (387)
                      ++.+++.|+. +         ..+.+||..+.
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5677777775 2         46888888765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.30  E-value=2.4  Score=35.12  Aligned_cols=59  Identities=10%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             eeEEEecCCCeEEEEEccCCCCceeEEeeccC--CC-----eeEEEec----CCCCCeEEEeeCCCeEEEEE
Q 016547          183 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--AD-----LHCVDWN----PLDDNLILTGSADNSVRMFD  243 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~-----i~~~~~~----~~~~~~l~~~~~dg~i~~~d  243 (387)
                      ..+++|+.+|.+.-.|+++++  .+..+....  ..     ..|....    ...+..++.+..+..+.+.+
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGE--IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCC--EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred             CEEEEEecCCEEEEEECCCCc--EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            578999999999999999998  343332211  10     0011110    00245677777777777766

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.40  E-value=3.6  Score=38.11  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             EEEccCCCeeEEEecC--C-----CeEEEEEccCCCC------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-----
Q 016547          175 VTFCPSSAQEFCSVGD--D-----SCLILWDARVGTS------PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----  236 (387)
Q Consensus       175 ~~~~~~~~~~l~~~~~--d-----g~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----  236 (387)
                      +.+....+.+++.|+.  +     ..+..||+.+...      ..+.........-.++.... ++.+++.|+.+     
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~~iyv~GG~~~~~~~  622 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT-PRKLLIVGGTSPSGLF  622 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE-TTEEEEECCBCSSCCC
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC-CCEEEEECCccCCCCC
Confidence            4445442367777765  2     4588999988772      22211111111111222222 36777777743     


Q ss_pred             ---CeEEEEEecc
Q 016547          237 ---NSVRMFDRRN  246 (387)
Q Consensus       237 ---g~i~~~d~~~  246 (387)
                         ..+.+||..+
T Consensus       623 ~~~~~v~~yd~~t  635 (695)
T 2zwa_A          623 DRTNSIISLDPLS  635 (695)
T ss_dssp             CTTTSEEEEETTT
T ss_pred             CCCCeEEEEECCC
Confidence               3477777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.40  E-value=0.48  Score=41.79  Aligned_cols=81  Identities=11%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             cCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCC---CC---CCC-ceEEeccccceEEEEEEcCCCCeeEEEecC
Q 016547          213 HDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTS---NG---VGS-PINKFEGHSAAVLCVQWSPDKSSVFGSSAE  284 (387)
Q Consensus       213 ~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~---~~---~~~-~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~  284 (387)
                      -......+..+| +|.++++++. +.++.++|++....   .+   ... .+.+.+ -.......+|.++| +.+.+.--
T Consensus       321 ~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfi  397 (638)
T 3sbq_A          321 VPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFI  397 (638)
T ss_dssp             ESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETT
T ss_pred             CCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeee
Confidence            345567889999 8888887765 78999999985311   00   011 122233 34567889999999 46778889


Q ss_pred             CCeEEEEeCCCC
Q 016547          285 DGLLNIWDYEKV  296 (387)
Q Consensus       285 d~~i~vwd~~~~  296 (387)
                      |..|.-|++...
T Consensus       398 dSqvvkWni~~a  409 (638)
T 3sbq_A          398 DSQVVKWNMEEA  409 (638)
T ss_dssp             TTEEEEEEHHHH
T ss_pred             cceEEEEeccHH
Confidence            999999999763

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.18  E-value=8.8  Score=33.43  Aligned_cols=118  Identities=9%  Similarity=0.118  Sum_probs=62.4

Q ss_pred             CCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEEec---------cccceEEEEEEcCC---CCeeEEE
Q 016547          215 ADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPD---KSSVFGS  281 (387)
Q Consensus       215 ~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~---~~~ll~s  281 (387)
                      .....|+|.| ++. .|+++...|.|++++......   ...+..+.         ..+.....|+|+|+   +.+|+++
T Consensus        14 ~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~   89 (463)
T 2wg3_C           14 RQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS   89 (463)
T ss_dssp             SSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence            4567999999 775 566667899999997432100   11222221         11456889999996   3345555


Q ss_pred             ecC--C----------CeEEEEeCCCCCceeccCCCCCCCCceeeeeec--cCCCCeeEEEEccCCCeEEEEecC
Q 016547          282 SAE--D----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA--GHRDKVVDFHWNASDPWTVVSVSD  342 (387)
Q Consensus       282 ~~~--d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~s~s~  342 (387)
                      -+.  +          ..|.-|.+........     .....+.+....  .....-..|+|.|||. |.++.++
T Consensus        90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~-----d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQV-----DLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSB-----CGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             EeCCCCCcccCCcccceEEEEEEEcCCCCCcc-----CCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence            432  1          1344455543110000     000112222222  2223568999999985 6666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.69  E-value=8.9  Score=34.14  Aligned_cols=76  Identities=9%  Similarity=-0.061  Sum_probs=55.1

Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC----------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  239 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  239 (387)
                      .....+..+|||...++++--+.++.++|++....          ..+.....-.-.....+|++ +++...+-..|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence            44567899999977777777899999999984210          01111222345567889999 88777788899999


Q ss_pred             EEEEecc
Q 016547          240 RMFDRRN  246 (387)
Q Consensus       240 ~~~d~~~  246 (387)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999976

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.66  E-value=24  Score=34.13  Aligned_cols=37  Identities=5%  Similarity=0.019  Sum_probs=30.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCcccc
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT  125 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  125 (387)
                      .+.+++..++..++++-+.|+++|+|++.++.+....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4567788888899999999999999999988765543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=86.48  E-value=22  Score=33.53  Aligned_cols=30  Identities=23%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEe
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWD   60 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd   60 (387)
                      .+.|.+|+++|.+...+..++..|.|...+
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~   43 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD   43 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec
Confidence            578999999997677777777777665443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=85.62  E-value=15  Score=30.95  Aligned_cols=71  Identities=14%  Similarity=0.064  Sum_probs=35.6

Q ss_pred             CCeEEEEEccCC-CeeEEEecCCCeEEEEEccCCCCceeEEee----------------ccCCCeeEEEecCCCCCeEEE
Q 016547          170 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEK----------------AHDADLHCVDWNPLDDNLILT  232 (387)
Q Consensus       170 ~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~~  232 (387)
                      ..|.++++.|.+ +..+..+...+.|...+-............                .....+.+|.++|.+...+..
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            357788888632 244555555565554432211211111110                112357889998844555666


Q ss_pred             eeCCCeEE
Q 016547          233 GSADNSVR  240 (387)
Q Consensus       233 ~~~dg~i~  240 (387)
                      +..++.|.
T Consensus       195 g~~~ggl~  202 (394)
T 3b7f_A          195 GMSSGGVF  202 (394)
T ss_dssp             EEETBEEE
T ss_pred             EECCCCEE
Confidence            65555443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.83  E-value=26  Score=33.92  Aligned_cols=33  Identities=9%  Similarity=0.078  Sum_probs=26.3

Q ss_pred             eEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       265 ~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      .+.+++..++..+++ +-+.|+++|+|++.++..
T Consensus       237 ~~~~~~~~~~~~~lf-tl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTYNVLV-MLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTTTEEE-EEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCCcEEE-EEECCCEEEEEECCCCCe
Confidence            467778888887654 888999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 1e-17
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 146 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 205
             D + K  D      R  + GHE  +  + F P+    F +  DD+   L+D R     
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL 261

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
           +          +  V ++     L+L G  D +  ++D                 GH   
Sbjct: 262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNR 314

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           V C+  + D  +V  + + D  L IW+
Sbjct: 315 VSCLGVTDDGMAVA-TGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 36/294 (12%)

Query: 71  LGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATD 126
           +G    R    L GH     +A+        ++S  +D  +++W        H     + 
Sbjct: 40  VGRIQMRTRRTLRGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 98

Query: 127 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 186
                +   SG+ +         +           R        T            +  
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           +   D+   LWD   G           D     +  +     L ++G+ D S +++D R 
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD---TRLFVSGACDASAKLWDVRE 215

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
                 G     F GH + +  + + P+  + F + ++D    ++D              
Sbjct: 216 ------GMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDL------------- 255

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360
                 + + H      +    ++ S    +++  DD           +W    
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDD-------FNCNVWDALK 301

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 20/169 (11%), Positives = 39/169 (23%), Gaps = 53/169 (31%)

Query: 30  HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89
           H  ++N I   P          D+   L      Q                    +    
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT------------YSHDNIICG 272

Query: 90  EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDG 149
             +++   +   +L+G  D +  +W                                   
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVW----------------------------------- 297

Query: 150 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 198
                D       G+  GH++ V  +           +   DS L +W+
Sbjct: 298 -----DALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 14/91 (15%)

Query: 25  HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG 84
           +        +  +        ++A + D  +  +WD               +    +L G
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDAL------------KADRAGVLAG 310

Query: 85  HQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 115
           H +     L +      V +G  D  + +W+
Sbjct: 311 HDNRV-SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (173), Expect = 2e-14
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 35/221 (15%)

Query: 95  MCPTEPYVLSGGKDKSVVLWSIQDH----ITSSATDPATAKSAGSSGSIIKQSPKPGDGN 150
           + P   +++S  +DK++ +W +Q        +   +          G++I       D  
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS--NDQT 166

Query: 151 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE-------------------FCSVGDD 191
            +     +   +     H   VE +++ P S+                       S   D
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
             + +WD   G    +     HD  +  V ++      IL+ + D ++R++D +N     
Sbjct: 227 KTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN----- 278

Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
               +     H   V  + +      V  + + D  + +W+
Sbjct: 279 -KRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 59/326 (18%)

Query: 82  LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-ITSSATDPATAKSAGSSGSII 140
           L+GH+      +   P    ++S  +D ++ +W  +      +      +    S     
Sbjct: 13  LSGHRSPV-TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 141 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 200
           K                            D          +     S   D  + +W+ +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 201 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 260
             T   +K    H   +  V  N  D  LI + S D +VR++               +  
Sbjct: 132 --TGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE------CKAELR 182

Query: 261 GHSAAVLCVQWSPDKS-------------------SVFGSSAEDGLLNIWDYEKVGKKVE 301
            H   V C+ W+P+ S                       S + D  + +WD    G  + 
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCL- 240

Query: 302 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 361
                            GH + V    +++   + ++S +DD        TL++W   + 
Sbjct: 241 -------------MTLVGHDNWVRGVLFHSGGKF-ILSCADD-------KTLRVWDYKN- 278

Query: 362 IYRPQDEVLAELEKFKAHVISCTSKP 387
                   +  L   +  V S     
Sbjct: 279 -----KRCMKTLNAHEHFVTSLDFHK 299

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 35/245 (14%), Positives = 72/245 (29%), Gaps = 54/245 (22%)

Query: 157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 216
           P    +   +GH   V  V F P       S  +D+ + +WD   G     +  K H   
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--FERTLKGHTDS 61

Query: 217 LHCVDWNPL-----------------------------------------DDNLILTGSA 235
           +  + ++                                           + + I++ S 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295
           D +++M++ +       G  +  F GH   V  V+ + D  ++  S + D  + +W    
Sbjct: 122 DKTIKMWEVQT------GYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVAT 174

Query: 296 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 355
              K E            +   + +           S+            S     T+++
Sbjct: 175 KECKAELREHRHVVECISWAPESSY---SSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 356 WRMSD 360
           W +S 
Sbjct: 232 WDVST 236

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 161 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV----------IKVE 210
                 GH+D+V  V F     Q   S   D  + LW+ +   +                
Sbjct: 246 ENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 211 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 270
             H   +  V     +D  IL+GS D  V  +D+++      G+P+   +GH  +V+ V 
Sbjct: 305 IGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKS------GNPLLMLQGHRNSVISVA 357

Query: 271 WSPDKS-----SVFGSSAEDGLLNIWDYEKV 296
            +   S     +VF + + D    IW Y+K+
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 47/300 (15%), Positives = 91/300 (30%), Gaps = 32/300 (10%)

Query: 79  DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-----------ITSSATDP 127
           +L  +    +    +       Y+ +G  +K+  ++ + D                  + 
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112

Query: 128 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 187
            T+ S  S   I      P DG   A        R     +   V  +            
Sbjct: 113 NTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171

Query: 188 VGDDSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 241
                 L+              +    +  + +  +  V  +P D   I  GS D +VR+
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

Query: 242 FDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 300
           +D         + S      GH  +V  V ++ D  SV  S + D  + +W+ +    K 
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKS 290

Query: 301 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 360
           +     +         + GH+D V+      +D + ++S S D         +  W    
Sbjct: 291 DSKTPNSGTC---EVTYIGHKDFVLSVATTQNDEY-ILSGSKD-------RGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 10/124 (8%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 219 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 278
            +D +       L    ++   +++        +   ++K   H++ V CV++S D   +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPA--LPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 279 FGSSAEDGLLNIWD---YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335
             ++  +    ++       V +  +      +               +    ++    +
Sbjct: 78  --ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135

Query: 336 TVVS 339
               
Sbjct: 136 LATG 139

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 41  PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100
           P + K +A  +    V +WD E                +   TGH+D + +++       
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVE-----RLDSENESGTGHKD-SVYSVVFTRDGQ 267

Query: 101 YVLSGGKDKSVVLWSIQD-------HITSSATDPATAKSAGSSGSIIKQSPKP------- 146
            V+SG  D+SV LW++Q+          +S T   T          +  +          
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-----QEFCSVGDDSCLILWDAR 200
            D      D  S  P  +  GH ++V  V     S+       F +   D    +W  +
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 265
           ++++E+A    +  +   P   +L+L  S D S+ ++             + +   +   
Sbjct: 3   IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHP 58

Query: 266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294
           +LC  +  +           G +   D  
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDW 222
           I    +D + D+   PS          D  L ++   +   +  +     +   L C ++
Sbjct: 6   IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 223 NPLDDNLILTGSADNSVRMFDRRN 246
               D  I  G+    +   D   
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 8/89 (8%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 315
           +   +     +  ++  P   S+   ++ DG L ++ ++   K V+              
Sbjct: 4   VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVD------------LL 50

Query: 316 QHAGHRDKVVDFHWNASDPWTVVSVSDDC 344
           Q   ++  ++  ++  +    +   +   
Sbjct: 51  QSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 190 DDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLT 248
           ++S +  +   +       +E++        V   P +       S D  V +    +  
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 249 SNGVGSPINKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 299
            +   S    F            +  V  +++SP    ++ +   DG+++ W+ +   KK
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQT-RKK 285

Query: 300 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD-------CDSTGGGGT 352
           ++   +              + D VV    +  D    ++ SDD        D T     
Sbjct: 286 IKNFAK-------------FNEDSVVKIACS--DNILCLATSDDTFKTNAAIDQTIELNA 330

Query: 353 LQIWRMSD 360
             I+ + D
Sbjct: 331 SSIYIIFD 338

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 29/285 (10%), Positives = 73/285 (25%), Gaps = 21/285 (7%)

Query: 81  ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD---------HITSSATDPATAK 131
           I    +D     + + P++  +L    D S+ ++              +           
Sbjct: 6   IEQAPKD-YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 191
              +   I   + +           PS         +        +           G  
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 251
             +   +   G   V  +   +    + +     + + ++ G  ++ V+ F    L    
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR---LPLCE 181

Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 311
             +   +  G    +  V   P +   +  S+ DG + +  ++  G       R      
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 312 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 356
            L  +       V    ++      + +   D       G +  W
Sbjct: 242 RLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSD-------GIISCW 278

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
           H++ +  + +        ++   DN +  +          G+ I +    S++VL    S
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY------GASIFQS-KESSSVLSCDIS 315

Query: 273 PDKSSVFGSSAEDGLLNIWD 292
            D   +  + + D    +++
Sbjct: 316 VDDKYIV-TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 44/342 (12%), Positives = 96/342 (28%), Gaps = 46/342 (13%)

Query: 22  VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI 81
            ++  T+ H   V  +      T+ V T      V +WD+    N+  V         L 
Sbjct: 42  ARQINTLNHGEVVCAVTISN-PTRHVYTGGKG-CVKVWDISHPGNKSPVSQ-------LD 92

Query: 82  LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 141
                DN   +  + P    ++ GG+  ++ +W +         +  ++  A  + +I  
Sbjct: 93  CLNR-DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 142 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 201
            S                              D   C   + +   +          +  
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261
                   +    + +  + + P  +          +V M        +       +   
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEW--------LAVGMESSNVEVLHVNKPDKYQLHL 263

Query: 262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 321
           H + VL ++++      F S+ +D LLN W                    G     +   
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY----------------GASIFQSKES 306

Query: 322 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 363
             V+    +  D + +V+ S D           ++   ++IY
Sbjct: 307 SSVLSCDISVDDKY-IVTGSGD-------KKATVY---EVIY 337

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 40/328 (12%), Positives = 87/328 (26%), Gaps = 24/328 (7%)

Query: 35  NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA 94
             I  +        + +    + +WD +   N +    + +         H D  +    
Sbjct: 15  ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER 74

Query: 95  MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKA- 153
                  V +      ++ + I         +  T K       ++    K         
Sbjct: 75  DAFELCLVATTSFSGDLLFYRIT-------REDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 154 -ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 212
            A    +    +          +      A E  S+  +    L          ++    
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE-----LQGTVESPMT 182

Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
                  VD +     LI TG  + +V++ +   L         +    +S ++  V++S
Sbjct: 183 PSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 332
           P  S +  +   +    I  YE    +         + +        H   V+   +N S
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300

Query: 333 DPWTVVSVSDDCDSTGGGGTLQIWRMSD 360
                 +  D        G L+ W +  
Sbjct: 301 GETLCSAGWD--------GKLRFWDVKT 320

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 16/145 (11%), Positives = 43/145 (29%), Gaps = 10/145 (6%)

Query: 205 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 263
                 KAHDAD+  V       +  ++ S D  ++++D + L +            H  
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 264 -----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318
                  +  ++    +  +  +++  G L  +   +  +  +      +       +H 
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH- 120

Query: 319 GHRDKVVDFHWNASDPWTVVSVSDD 343
                      +      +V+    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVK 145

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 16/289 (5%), Positives = 53/289 (18%), Gaps = 57/289 (19%)

Query: 81  ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 140
               H  +     ++     + +S   D  + +W           D     +        
Sbjct: 9   AGKAHDADI---FSVSACNSFTVSCSGDGYLKVW-----------DNKLLDNENPKDKSY 54

Query: 141 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 200
                    +                 H D ++ +           +      L+ +   
Sbjct: 55  SHFVHKSGLH-----------------HVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 201 VGTSPV--------IKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLT 248
                         +            + W   +D    + ++      +  ++      
Sbjct: 98  REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157

Query: 249 SNG------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 296
                          +   +      S     V  S       G +  +G + I +   +
Sbjct: 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFN--NGTVQISELSTL 215

Query: 297 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 345
                   + +        +      +                   + +
Sbjct: 216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 39/344 (11%), Positives = 82/344 (23%), Gaps = 47/344 (13%)

Query: 3   LWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE 62
           +W   +L  +  ++           + H   +  I        +VAT + S D+L + + 
Sbjct: 38  VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 63  AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHI 120
            +     V+       D  +  H   A    A         +++     +  +W      
Sbjct: 98  REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157

Query: 121 TSSATDPATAKSAGSSGSIIKQSPKPGD--------GNDKAADGPSVGPRGIYNGHEDTV 172
             S +              ++    P               A G + G   I        
Sbjct: 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRP 217

Query: 173 EDVTFCPSSAQEFC----------------SVGDDSC--------------LILWDARVG 202
                   S                        D +               +        
Sbjct: 218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 277

Query: 203 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH 262
           +S     E AH + +  + +N      + +   D  +R +D +          I     H
Sbjct: 278 SSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT------KERITTLNMH 330

Query: 263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
              +   +          S AE G+ ++   +K  +        
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 52/327 (15%), Positives = 99/327 (30%), Gaps = 45/327 (13%)

Query: 30  HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89
                  +  L  + + + +      + IWD                    ILTGH  + 
Sbjct: 11  RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGS- 57

Query: 90  EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDG 149
              L +   E  +++G  D +V +W +      +              +         D 
Sbjct: 58  --VLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 115

Query: 150 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV 209
           +    D  S     +          V       +   S   D  + +W+         + 
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-----EF 170

Query: 210 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 269
            +  +     +      D L+++GS+DN++R++D         G+ +   EGH   V C+
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC------GACLRVLEGHEELVRCI 224

Query: 270 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 329
           ++   +     S A DG + +WD                           H  +V    +
Sbjct: 225 RFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTL------CLRTLVEHSGRVFRLQF 275

Query: 330 NASDPWTVVSVSDDCDSTGGGGTLQIW 356
              D + +VS S D        T+ IW
Sbjct: 276 ---DEFQIVSSSHD-------DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 14/149 (9%)

Query: 147 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV 206
           GD   K  +  +       NGH+  +  + +     +   S   D+ + LWD        
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC----- 207

Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR---NLTSNGVGSPINKFEGHS 263
               +  +     V     D+  I++G+ D  ++++D     +  +      +     HS
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
             V  +Q+         SS+ D  + IWD
Sbjct: 268 GRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 207 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 266
           I         ++C+ +   DD  I++G  DN+++++D+                GH+ +V
Sbjct: 8   IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNT------LECKRILTGHTGSV 58

Query: 267 LCVQWSPDK 275
           LC+Q+    
Sbjct: 59  LCLQYDERV 67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 95  MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 154
           +   + Y++S   D+++ +W+          +      A              D   +  
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 203

Query: 155 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-------VI 207
           D        +  GHE+ V  + F     +   S   D  + +WD      P        +
Sbjct: 204 DIECGACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 208 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
           +    H   +  + +   D+  I++ S D+++ ++D
Sbjct: 261 RTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 163 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 222
             ++   + +    +      +     ++  + +++        +   K H+  +  VDW
Sbjct: 1   AYHSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59

Query: 223 NPLDDNLILTGSADNSVRMFDRRN 246
            P D N I+T   D +  ++  + 
Sbjct: 60  AP-DSNRIVTCGTDRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236
               +     + G D   +L+        +    +                      +A 
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS----------SQRGLTAR 298

Query: 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDY 293
              +  D++  +     +       H  +V  +        K S F ++  DG ++IWD 
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 294 EKVGKKVEQ 302
             +   ++ 
Sbjct: 359 RSLESALKD 367

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 85  HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 144
             +          TE  +++ G D   VL++        +          SS   +    
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 145 KPGDGNDKA-ADGPSVGPRGIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDAR 200
           +  + + KA ++G +    G+ + H+++V  ++      +   +FC+ G D  + +WD R
Sbjct: 300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 224
           ++     V DV F P S +   +VG D  +  +D + G       +            + 
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 225 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSS 282
           LD     T  AD ++R++D            + K+      +   Q       +    S 
Sbjct: 261 LDSQKFATVGADATIRVWDVTT------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 283 AEDGLLNIWD 292
           + DG LN ++
Sbjct: 315 SLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 219 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSS 277
            + ++P  + +         VR  D      +    P+ +F GH S+ V  V++SP K S
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLD----DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 278 VF-GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 336
            +  S  E G + +W              + +    +  +       + D  W+      
Sbjct: 78  QYLCSGDESGKVIVWG-------WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 337 V 337
            
Sbjct: 131 C 131

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 49/344 (14%), Positives = 92/344 (26%), Gaps = 49/344 (14%)

Query: 30  HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 89
                  +   P    I      S  V   D           G +   P +  TGH  + 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLD----------DGDSKVPPVVQFTGHGSSV 65

Query: 90  EFALAMCPTEP--YVLSGGKDKSV------------VLWSIQDHITSSATDPATAKSAGS 135
              +   P +   Y+ SG +   V             +             P +  S   
Sbjct: 66  VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125

Query: 136 SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 195
            G  +    +  D         S    G  +GH   +       S      +VGDD  ++
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 196 LWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 254
            +                  + +  V+++P     ++T  +D  +  FD ++        
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 314
              +             S   S  F +   D  + +WD     K V++            
Sbjct: 246 DDQEPVQGG----IFALSWLDSQKFATVGADATIRVWDVTT-SKCVQK------------ 288

Query: 315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 358
           +     +         A+    ++S+S D       GTL  + +
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLD-------GTLNFYEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
             + + C+ +   +DN ++TG+ D  +R++D  N         + +  GH   V  ++++
Sbjct: 12  MTSVITCLQF---EDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYA 62

Query: 273 PDKSSVFGSS 282
                V GS+
Sbjct: 63  HGGILVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQW 271
           H  +L  +    + DN++++GS +N   +++ R+      G  +       +  +  V +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS------GKLVHANILKDADQIWSVNF 332

Query: 272 SPDKSSVFGSSAEDGLLNIWDY 293
                           L I D+
Sbjct: 333 KGKTLVAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 224
           ++ H   +  +T    S     S G ++   +++ R G   V          +  V++  
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGK-LVHANILKDADQIWSVNFKG 334

Query: 225 LDDNLILTGSADNSVRM 241
               L+     D    +
Sbjct: 335 --KTLVAAVEKDGQSFL 349

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 7e-07
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 272
                   +   ++++L+ TGS D ++ ++  +          I     H   V  + W 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLWE 267

Query: 273 PDKSSVFGSSAEDGLLNIWD 292
               S   SS  D  +  W+
Sbjct: 268 TP--STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 175 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 234
                       +   D+ + ++  +      IK   AH   ++ + W     + +++  
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-IKALNAHKDGVNNLLWET--PSTLVSSG 276

Query: 235 ADNSVRMFD 243
           AD  ++ ++
Sbjct: 277 ADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 16/79 (20%)

Query: 202 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 261
           G   V+K    H+  +  +  NPL     ++GS D  +  +              +  + 
Sbjct: 1   GHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSS-----------SMHQD 44

Query: 262 HSAAVLCVQWSPDKSSVFG 280
           HS  ++ +  S  +     
Sbjct: 45  HSNLIVSLDNSKAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 251 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 298
           G    +    GH+  +  +  +P       S + DG +  W    + +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 16/188 (8%)

Query: 185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 244
             ++ D   + L D       +  V     A +H    +      +     D  V M D 
Sbjct: 35  SVTLRDAGQIALIDGSTYE--IKTVLDTGYA-VHISRLSA-SGRYLFVIGRDGKVNMIDL 90

Query: 245 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 304
                  V   I       +         +       +       I D E +  K  Q  
Sbjct: 91  WMKEPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

Query: 305 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 364
           R   Y     +        ++  H     P  +V+V +        G + +   +DL   
Sbjct: 150 RGMTYDEQ-EYHPEPRVAAILASH---YRPEFIVNVKET-------GKILLVDYTDLNNL 198

Query: 365 PQDEVLAE 372
              E+ AE
Sbjct: 199 KTTEISAE 206

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 26/201 (12%), Positives = 44/201 (21%), Gaps = 17/201 (8%)

Query: 172 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV---IKVEKAHDADLHCVDWNPLDDN 228
           V       S    F   G D  + + D  +        IK+     +          D  
Sbjct: 64  VHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122

Query: 229 LILTGSADNSVRMFDRRNLTSNGVGSPIN-----KFEGHSAAVLCVQWSPDKSSVFGSSA 283
            I          + D   L    + S        +       V  +  S  +     +  
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGL--------FFQHAGHRDKVVDFHWNASDPW 335
           E G + + DY  +            +            F   A  R+K+V          
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

Query: 336 TVVSVSDDCDSTGGGGTLQIW 356
            +          G G      
Sbjct: 243 AIEDTGGQTPHPGRGANFVHP 263

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 200 RVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 258
           R G     KV K H D  + C+ +     N I++GS DN+++++          G  +  
Sbjct: 2   RRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVT------GKCLRT 52

Query: 259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 318
             GH+  V   Q   +      +     + N    E +                     +
Sbjct: 53  LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 319 GHRDKVVDFHWN 330
           G RD  +     
Sbjct: 113 GSRDATLRVWDI 124

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 148 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 207
           D + +  D  +        GH+     +    +      S   DS + +WD +  T   +
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK--TGQCL 250

Query: 208 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGH 262
           +  +  +     V     + N ++T S D +V+++D +       G  I         G 
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT------GEFIRNLVTLESGGS 304

Query: 263 SAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEK 295
              V  ++ S  K      S    E+  L + D++ 
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 19/218 (8%)

Query: 77  RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS 136
           +   +L GH D+    L  C     ++SG  D ++ +WS     T          + G  
Sbjct: 7   KSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVW 61

Query: 137 GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 196
            S ++ +       D+     +       +        V       +   S   D+ L +
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 197 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 256
           WD   G     +        +  V     D   +++G+ D  V+++D    T       +
Sbjct: 122 WDIETG-----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET------CL 170

Query: 257 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 294
           +  +GH+  V  +Q+         S + D  + +WD E
Sbjct: 171 HTLQGHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVE 205

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 11/164 (6%)

Query: 82  LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH--ITSSATDPATAKSAGSSGSI 139
           L GH +       +     +V+SG  D S+ +W ++    I +     +         +I
Sbjct: 173 LQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 140 IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 199
           +       D   K  D  +        G       VT    +     +  DD  + LWD 
Sbjct: 230 LVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

Query: 200 RVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 240
           + G    + V          +  +  +     +   GS + +  
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEE 330

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 7e-06
 Identities = 40/319 (12%), Positives = 73/319 (22%), Gaps = 40/319 (12%)

Query: 41  PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 100
           P   KI   +  S  V    V             +     I T H           P+  
Sbjct: 27  PAGDKIQYCNGTS--VYTVPVG------------SLTDTEIYTEHSHQT-TVAKTSPSGY 71

Query: 101 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG---SIIKQSPKPGDGNDKAADGP 157
           Y  SG    +V +W          T               S  K+    G+G ++     
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 158 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 217
                            +            +   S         G     K         
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
                   D +L  +   D ++ +++  + T  GV    +      +  +         +
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251

Query: 278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337
              S++ D  + IW+              T              D+ +   W       +
Sbjct: 252 KIASASADKTIKIWNVA------------TLKVEKTIPVGTRIEDQQLGIIW---TKQAL 296

Query: 338 VSVSDDCDSTGGGGTLQIW 356
           VS+S +       G +   
Sbjct: 297 VSISAN-------GFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 213 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQW 271
             +          D   I + SAD ++++++                   +      +  
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT------LKVEKTIPVGTRIEDQQLGI 289

Query: 272 SPDKSSVFGSSAEDGLLNIWDYE 294
              K ++  S + +G +N  + E
Sbjct: 290 IWTKQALV-SISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 9/118 (7%)

Query: 218 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 277
             +   P   + I   +   SV      +       +    +  HS      + SP    
Sbjct: 21  VVLGNTP-AGDKIQYCN-GTSVYTVPVGS------LTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 278 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 335
              S    G + IWD  +    ++      + P       +  +              
Sbjct: 73  CA-SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 6/151 (3%)

Query: 187 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 246
           ++ D   + L D       ++KV     A +H    +      +L    D  + M D   
Sbjct: 37  TLRDAGQIALVDGDSKK--IVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 306
                V   I       +         +       +       I D E +  K     R 
Sbjct: 93  KEPTKVA-EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 307 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 337
                   +        ++  H +      V
Sbjct: 152 MTVD-TQTYHPEPRVAAIIASHEHPEFIVNV 181

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 7e-05
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 8/131 (6%)

Query: 206 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSA 264
           + +V   H+  +  +  +  D   + +  A+  +  +D         G     F + H+ 
Sbjct: 4   IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST------GISNRVFPDVHAT 56

Query: 265 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 324
            +  ++ +        S  +   +       V        + ++ P GL     G     
Sbjct: 57  MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

Query: 325 VDFHWNASDPW 335
             +   A    
Sbjct: 117 ACYKHIAIYSH 127

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236
                     +   D+ +I+W+    +   I ++ AH            ++  I++   D
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQD 289

Query: 237 NSVRMFD 243
           ++++ ++
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 5/116 (4%)

Query: 177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 236
              ++     +      +I +                            D+  + TGS D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245

Query: 237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 292
           NSV +++    + + +   I K     ++V  V W  + + V      D  +  W+
Sbjct: 246 NSVIVWNMNKPSDHPI---IIKGAHAMSSVNSVIWLNETTIVSAGQ--DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 252 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 295
           +GS      GH+ A+  +  S D  ++F S+  +G +N WD   
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 164 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 223
           +  GH   +  ++      +   S   +  +  WD   G          H   +  +   
Sbjct: 7   VRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKTT 64

Query: 224 P 224
            
Sbjct: 65  S 65

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 13/164 (7%), Positives = 30/164 (18%), Gaps = 22/164 (13%)

Query: 95  MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-------- 146
                  +                   S              GS       P        
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 147 -----GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDA 199
                      +      G   +    E ++   +       A  +    +   L+ +D 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 200 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 243
           +               +L  +  +  D   ++    D  +  F 
Sbjct: 306 KTRK------VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 16/133 (12%)

Query: 167 GHEDTVEDVTFCPSSAQ----EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 222
               +       P S      E+            +   G   +I   ++          
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 223 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 282
                           +  +D +            K       +  ++ S D+ +V    
Sbjct: 285 GE-FAAYYQGAPEKGVLLKYDVKT----------RKVTEVKNNLTDLRLSADRKTVM-VR 332

Query: 283 AEDGLLNIWDYEK 295
            +DG +  +  EK
Sbjct: 333 KDDGKIYTFPLEK 345

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.57
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.46
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.3
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.14
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.8
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.77
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.56
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.91
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.91
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.4
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.33
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.61
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.73
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.61
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.55
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.32
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.01
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.89
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.65
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.16
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.8
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.42
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.51
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.37
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.15
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	84.79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-43  Score=296.02  Aligned_cols=275  Identities=19%  Similarity=0.337  Sum_probs=231.1

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .+....++|.+.|+|++|+| ++++||||+ ||.|+|||+........       .......+|.+ .|.+++|+|++++
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~-------~~~~~~~~h~~-~I~~v~~s~dg~~  111 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSP-------VSQLDCLNRDN-YIRSCKLLPDGCT  111 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSC-------SEEEECSCTTS-BEEEEEECTTSSE
T ss_pred             ceEEEECCCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccce-------eEEeeecCCCC-cEEEEEEcCCCCE
Confidence            35566778999999999999 899999987 89999999987632221       12233456776 7999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      |++|+.||.|++||+....                                      ......+..|...+.++.|+|++
T Consensus       112 l~s~~~dg~i~iwd~~~~~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~  153 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPT--------------------------------------PRIKAELTSSAPACYALAISPDS  153 (337)
T ss_dssp             EEEEESSSEEEEEECCCC----------------------------------------EEEEEEECSSSCEEEEEECTTS
T ss_pred             EEEeecccccccccccccc--------------------------------------ccccccccccccccccccccccc
Confidence            9999999999999986421                                      12235567889999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       .++++++.|+.|++||+.+++  .......|...+++++|++ ++..+++++.||.|++||+++      ++.+..+. 
T Consensus       154 -~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~-  222 (337)
T d1gxra_         154 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD-  222 (337)
T ss_dssp             -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE-
T ss_pred             -ccccccccccccccccccccc--ccccccccccccccccccc-ccccccccccccccccccccc------ceeecccc-
Confidence             789999999999999999877  5667778999999999999 999999999999999999998      77777665 


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...|.+++|+|+++. +++++.|+.+++||++...                ......|...|++++|+|++++++    
T Consensus       223 ~~~~i~~l~~~~~~~~-l~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~i~~v~~s~~g~~l~----  281 (337)
T d1gxra_         223 FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD----------------KYQLHLHESCVLSLKFAYCGKWFV----  281 (337)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC----------------EEEECCCSSCEEEEEECTTSSEEE----
T ss_pred             cccceEEEEEcccccc-cceeccccccccccccccc----------------cccccccccccceEEECCCCCEEE----
Confidence            7889999999999986 5689999999999998742                234567899999999999999877    


Q ss_pred             CCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          342 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                          +|+.||.|++||+.      +++++..+ .|.+.|.+++|+|
T Consensus       282 ----s~s~Dg~i~iwd~~------~~~~~~~~-~~~~~v~~~~~s~  316 (337)
T d1gxra_         282 ----STGKDNLLNAWRTP------YGASIFQS-KESSSVLSCDISV  316 (337)
T ss_dssp             ----EEETTSEEEEEETT------TCCEEEEE-ECSSCEEEEEECT
T ss_pred             ----EEeCCCeEEEEECC------CCCEEEEc-cCCCCEEEEEEeC
Confidence                66777999999999      67777664 4889999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-42  Score=287.23  Aligned_cols=270  Identities=21%  Similarity=0.371  Sum_probs=242.0

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.||.++|++++|+| ++++||||+.||+|+|||++++            +.+..+.+|.. .|.+++|+|++.++++
T Consensus        11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~------------~~~~~~~~h~~-~V~~~~~~~~~~~~~~   76 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLAS   76 (317)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred             EEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEEeCCCC-cEEEEeeecccccccc
Confidence            45679999999999999 8899999999999999999988            77888999988 7999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      +..++.+.+|+.....                                        ....+..|...+.++.|+|++ ..
T Consensus        77 ~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~  115 (317)
T d1vyhc1          77 CSADMTIKLWDFQGFE----------------------------------------CIRTMHGHDHNVSSVSIMPNG-DH  115 (317)
T ss_dssp             EETTSCCCEEETTSSC----------------------------------------EEECCCCCSSCEEEEEECSSS-SE
T ss_pred             cccccccccccccccc----------------------------------------cccccccccccceeeeccCCC-ce
Confidence            9999999999986432                                        224556788999999999998 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  264 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  264 (387)
                      +++++.|+.+++||+++++  ....+..|...+.+++++| ++.+|++++.|+.|++|+.++      ...+..+..|..
T Consensus       116 ~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~------~~~~~~~~~~~~  186 (317)
T d1vyhc1         116 IVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT------KECKAELREHRH  186 (317)
T ss_dssp             EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCCSS
T ss_pred             EEeeccCcceeEeecccce--eeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeecc------ceeeEEEecCCC
Confidence            9999999999999999887  6777888999999999999 999999999999999999998      888999999999


Q ss_pred             eEEEEEEcCCCCe-------------------eEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          265 AVLCVQWSPDKSS-------------------VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       265 ~i~~~~~~~~~~~-------------------ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                      .+.+++|+|++..                   ++++++.|+.|++||+++.               ..+..+.+|...|.
T Consensus       187 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---------------~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------------MCLMTLVGHDNWVR  251 (317)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEE
T ss_pred             CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---------------cEEEEEeCCCCCEE
Confidence            9999999886431                   4678999999999999875               45677889999999


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      +++|+|++++|+        +|+.||.|++||+.      +++++.++.+|.+.|++++|+|
T Consensus       252 ~~~~~~~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         252 GVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECCSSCEEEEEECS
T ss_pred             EEEECCCCCEEE--------EEECCCeEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            999999999887        67777999999999      7889999999999999999987

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-42  Score=289.26  Aligned_cols=286  Identities=19%  Similarity=0.284  Sum_probs=222.5

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.||.++|++++|+| ++++||||+.||+|+|||+.++            +.+..+..|.. .|.+++|+|+++++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~v~~~~~~~~l  112 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNYV  112 (340)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT------------EEEEEEECSCS-CEEEEEECTTSSEE
T ss_pred             eeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccc------------eeEEEEecccc-cEEeeEeeccceee
Confidence            3455678999999999999 8899999999999999999988            67888899987 79999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccC------CCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS------PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      ++|+.|+.+++|+............... ............      ....+.....+.............+...+....
T Consensus       113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             EEEETTCCEEEEESSSSCSCCCEEEEEC-CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             eeecccceeecccccccccccccceecc-cccccccccccccccccccccccccccccccccccccccccccceeEeeec
Confidence            9999999999999876533221110000 000000000000      000111111222222333344556777889999


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      +.+.+ .++++++.|+.|++||+++++  ....+.+|...|++++|+| ++++|++|+.||.|++||++.      ...+
T Consensus       192 ~~~~~-~~~~~~~~d~~v~i~d~~~~~--~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~------~~~~  261 (340)
T d1tbga_         192 LAPDT-RLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQEL  261 (340)
T ss_dssp             ECTTS-SEEEEEETTTEEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEE
T ss_pred             ccccc-ceeEEeecCceEEEEECCCCc--EEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecc------cccc
Confidence            99887 789999999999999999887  6777889999999999999 999999999999999999997      5555


Q ss_pred             EEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCC
Q 016547          257 NKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  334 (387)
Q Consensus       257 ~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  334 (387)
                      ..+  ..+...|.+++|+|++++ |++|+.||.|++||+.+.               ..+..+.+|...|++++|+|+++
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~i~iwd~~~~---------------~~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCE-EEEEETTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSS
T ss_pred             cccccccccCceEEEEECCCCCE-EEEEECCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEeCCCC
Confidence            554  456678999999999996 579999999999999875               45677889999999999999999


Q ss_pred             eEEEEecCCCCCCCCCceEEEEe
Q 016547          335 WTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       335 ~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      +|+        ||+.||+|+|||
T Consensus       326 ~l~--------s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 AVA--------TGSWDSFLKIWN  340 (340)
T ss_dssp             CEE--------EEETTSCEEEEC
T ss_pred             EEE--------EEccCCEEEEeC
Confidence            887        777779999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.1e-41  Score=279.42  Aligned_cols=247  Identities=17%  Similarity=0.284  Sum_probs=202.3

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+...          .....+.+|.. .|.+++|+|++++|+++
T Consensus        53 ~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~----------~~~~~~~~~~~-~v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTH----------ILKTTIPVFSG-PVKDISWDSESKRIAAV  120 (311)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTC----------CEEEEEECSSS-CEEEEEECTTSCEEEEE
T ss_pred             EEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeecccc----------ccccccccccC-ccccccccccccccccc
Confidence            3458999999999999 899999999999999999988721          23355788887 79999999999999988


Q ss_pred             cC--CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          106 GK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       106 ~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +.  ++.+++|+++++.                                        ....+.+|...|++++|+|+++.
T Consensus       121 ~~~~~~~~~v~~~~~~~----------------------------------------~~~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGT----------------------------------------SNGNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             ECCSSCSEEEEETTTCC----------------------------------------BCBCCCCCSSCEEEEEECSSSSC
T ss_pred             ccccccccccccccccc----------------------------------------cccccccccccccccccccccee
Confidence            75  4569999987542                                        22556789999999999999866


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe----
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----  259 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----  259 (387)
                      .+++|+.|+.|++||+++.+  .......|...|+++.|+| +++++++++.||.|++||.++      +..+..+    
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~------~~~~~~~~~~~  231 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFEDDS  231 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECBCTT
T ss_pred             eecccccccccccccccccc--cccccccccccccccccCc-ccccccccccccccccccccc------ccccccccccc
Confidence            78999999999999999877  6677788999999999999 999999999999999999987      5555544    


Q ss_pred             ---ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC---CeeEEEEccCC
Q 016547          260 ---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASD  333 (387)
Q Consensus       260 ---~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~  333 (387)
                         .+|...|++++|+|++++ |++|+.||.|+|||+++.               +++..+..|..   .+.++.|+  +
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t~---------------~~~~~l~~~~~~~~~~~~~~~~--~  293 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATL---------------KVEKTIPVGTRIEDQQLGIIWT--K  293 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTT---------------EEEEEEECCSSGGGCEEEEEEC--S
T ss_pred             cccccccccccccccCCCCCE-EEEEeCCCeEEEEECCCC---------------cEEEEEECCCCccceEEEEEec--C
Confidence               358889999999999996 568999999999999875               33444554433   44455554  5


Q ss_pred             CeEEEEecCCCCCCCCCceEEEEecC
Q 016547          334 PWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       334 ~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++++        +++.||.|++||.+
T Consensus       294 ~~l~--------s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         294 QALV--------SISANGFINFVNPE  311 (311)
T ss_dssp             SCEE--------EEETTCCEEEEETT
T ss_pred             CEEE--------EEECCCEEEEEeCC
Confidence            5666        56667999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-41  Score=282.08  Aligned_cols=272  Identities=18%  Similarity=0.261  Sum_probs=222.1

Q ss_pred             cCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           29 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .+.+.+.+++++| +++.||.++ ++.|.+||+++.            .....+.+|.. .|++++|+|+|++|++|+.|
T Consensus        15 ~~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~------------~~~~~~~~H~~-~v~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1          15 TARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSL------------TDTEIYTEHSH-QTTVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             CCTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCS------------SCCEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCC------------ceeEEEcCCCC-CEEEEEEeCCCCeEeccccC
Confidence            3566778899999 778888875 557999999988            67778899987 79999999999999999999


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      |+|++||+.+....                                      ....+..|..+|.+++|+|++ .+++++
T Consensus        80 g~i~iwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~v~~s~d~-~~l~~~  120 (311)
T d1nr0a1          80 GNVRIWDTTQTTHI--------------------------------------LKTTIPVFSGPVKDISWDSES-KRIAAV  120 (311)
T ss_dssp             SEEEEEESSSTTCC--------------------------------------EEEEEECSSSCEEEEEECTTS-CEEEEE
T ss_pred             ceEeeeeeeccccc--------------------------------------cccccccccCccccccccccc-cccccc
Confidence            99999999864321                                      124567899999999999998 677777


Q ss_pred             cC--CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce
Q 016547          189 GD--DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  265 (387)
Q Consensus       189 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~  265 (387)
                      +.  +..+++|++++++  ....+.+|...|++++|+| ++. .|++|+.||.|++||+++      .+....+..|...
T Consensus       121 ~~~~~~~~~v~~~~~~~--~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~------~~~~~~~~~~~~~  191 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPP------FKFKSTFGEHTKF  191 (311)
T ss_dssp             ECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTT------BEEEEEECCCSSC
T ss_pred             ccccccccccccccccc--ccccccccccccccccccc-cceeeecccccccccccccccc------ccccccccccccc
Confidence            64  5669999999877  4566788999999999999 666 588899999999999998      8889999999999


Q ss_pred             EEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCC
Q 016547          266 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  345 (387)
Q Consensus       266 i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~  345 (387)
                      |++++|+|++++ +++++.|+.|++||+...........        ......+|...|++++|+|++++|+        
T Consensus       192 i~~v~~~p~~~~-l~~~~~d~~v~~~d~~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~s~~~~~l~--------  254 (311)
T d1nr0a1         192 VHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFED--------DSLKNVAHSGSVFGLTWSPDGTKIA--------  254 (311)
T ss_dssp             EEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEECBC--------TTSSSCSSSSCEEEEEECTTSSEEE--------
T ss_pred             ccccccCccccc-cccccccccccccccccccccccccc--------cccccccccccccccccCCCCCEEE--------
Confidence            999999999995 67899999999999987543322110        0122357899999999999999887        


Q ss_pred             CCCCCceEEEEecCCCcccccchhhhhhhccCc---eEEEeeec
Q 016547          346 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA---HVISCTSK  386 (387)
Q Consensus       346 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~v~~~~f~  386 (387)
                      +|+.||+|+|||++      ++++++++..|..   .+.++.|+
T Consensus       255 tgs~Dg~v~iwd~~------t~~~~~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         255 SASADKTIKIWNVA------TLKVEKTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             EEETTSEEEEEETT------TTEEEEEEECCSSGGGCEEEEEEC
T ss_pred             EEeCCCeEEEEECC------CCcEEEEEECCCCccceEEEEEec
Confidence            67777999999999      7888888876543   45566554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-41  Score=288.14  Aligned_cols=294  Identities=20%  Similarity=0.327  Sum_probs=223.6

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCC------CCeEEEeccCCCceEEEEE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNS------RPDLILTGHQDNAEFALAM   95 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~h~~~~v~~~~~   95 (387)
                      ......++|.+.|+|++|+| ++++||+|+ |++|+|||+.+++....+......      ........|.. .|++++|
T Consensus        53 ~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~  129 (388)
T d1erja_          53 VELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL-YIRSVCF  129 (388)
T ss_dssp             EEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCC-BEEEEEE
T ss_pred             eeeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCC-CEEEEEE
Confidence            34456678999999999999 889999986 899999999988544332221110      11222344555 6999999


Q ss_pred             CCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEE
Q 016547           96 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  175 (387)
Q Consensus        96 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  175 (387)
                      +|++++|++|+.||.|++||...+.                                        ....+.+|...|.++
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~----------------------------------------~~~~~~~h~~~v~~~  169 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRK----------------------------------------IVMILQGHEQDIYSL  169 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEE
T ss_pred             CCCCCcceecccccccccccccccc----------------------------------------ccccccccccccccc
Confidence            9999999999999999999987542                                        235667899999999


Q ss_pred             EEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          176 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       176 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      .+++++ ..+++++.++.+++||.++..  ...... +.....++.+.+.++++|++|+.||.|++||.++      +..
T Consensus       170 ~~~~~~-~~~~~~~~~~~i~~~d~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~------~~~  239 (388)
T d1erja_         170 DYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------GFL  239 (388)
T ss_dssp             EECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT------CCE
T ss_pred             cccccc-ccccccccceeeeeeeccccc--cccccc-cccccccccccCCCCCeEEEEcCCCeEEEeeccc------Ccc
Confidence            999998 789999999999999998776  344443 4455666667665889999999999999999987      555


Q ss_pred             eEEe-------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEE
Q 016547          256 INKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  328 (387)
Q Consensus       256 ~~~~-------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (387)
                      +..+       .+|...|.+++|+|++++ |++++.||.|++||++...........   ...........|...|++++
T Consensus       240 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~  315 (388)
T d1erja_         240 VERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTP---NSGTCEVTYIGHKDFVLSVA  315 (388)
T ss_dssp             EEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC------------------CEEEEEECCSSCEEEEE
T ss_pred             ceeeccccccccCCCCCEEEEEECCCCCE-EEEEECCCcEEEEeccCCccccccccc---cccceeeecccccceEEEEE
Confidence            5443       457889999999999995 679999999999999875433221111   11234556678999999999


Q ss_pred             EccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeeec
Q 016547          329 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  386 (387)
Q Consensus       329 ~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~  386 (387)
                      |+|++++++        +|+.||.|++||+.      +++++.++.+|.+.|.+++++
T Consensus       316 ~s~~~~~l~--------sg~~dg~i~vwd~~------~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         316 TTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             ECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEEC
T ss_pred             ECCCCCEEE--------EEeCCCEEEEEECC------CCcEEEEEeCCCCCEEEEEEe
Confidence            999999887        67777999999999      789999999999999999764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=272.30  Aligned_cols=248  Identities=19%  Similarity=0.355  Sum_probs=208.9

Q ss_pred             eeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           22 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        22 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .......+|.+.|.+++|+| ++++|++|+.||+|++||+....          .+....+..|.. .|.+++|+|++.+
T Consensus        88 ~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~-~v~~~~~~~~~~~  155 (337)
T d1gxra_          88 VSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAP-ACYALAISPDSKV  155 (337)
T ss_dssp             SEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSS-CEEEEEECTTSSE
T ss_pred             eEEeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccccccc----------cccccccccccc-ccccccccccccc
Confidence            33445568999999999999 88999999999999999987651          134566777876 6899999999999


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++++.|+.|++|++.++.                                        .......|...|.+++|++++
T Consensus       156 l~s~~~d~~i~~~~~~~~~----------------------------------------~~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             EEEEETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccc----------------------------------------ccccccccccccccccccccc
Confidence            9999999999999997542                                        235566789999999999998


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecc
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  261 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  261 (387)
                       ..+++++.|+.+++||+++++  .+.. ..|...|.+++|+| ++++|++++.||.+++||++.      ... .....
T Consensus       196 -~~~~~~~~d~~v~i~d~~~~~--~~~~-~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~-~~~~~  263 (337)
T d1gxra_         196 -TKLWTGGLDNTVRSWDLREGR--QLQQ-HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------PDK-YQLHL  263 (337)
T ss_dssp             -SEEEEEETTSEEEEEETTTTE--EEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------SCE-EEECC
T ss_pred             -cccccccccccccccccccce--eecc-cccccceEEEEEcc-cccccceeccccccccccccc------ccc-ccccc
Confidence             789999999999999998877  3433 45888999999999 999999999999999999986      444 45667


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...|++++|+|++++ |++++.||.|++||+....               .+.. ..|...|++++|+|++++|+    
T Consensus       264 ~~~~i~~v~~s~~g~~-l~s~s~Dg~i~iwd~~~~~---------------~~~~-~~~~~~v~~~~~s~d~~~l~----  322 (337)
T d1gxra_         264 HESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGA---------------SIFQ-SKESSSVLSCDISVDDKYIV----  322 (337)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCC---------------EEEE-EECSSCEEEEEECTTSCEEE----
T ss_pred             cccccceEEECCCCCE-EEEEeCCCeEEEEECCCCC---------------EEEE-ccCCCCEEEEEEeCCCCEEE----
Confidence            9999999999999995 6799999999999998752               2222 45788999999999999877    


Q ss_pred             CCCCCCCCCceEEEEec
Q 016547          342 DDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~  358 (387)
                          ||+.||+|+|||+
T Consensus       323 ----t~s~D~~I~vWdl  335 (337)
T d1gxra_         323 ----TGSGDKKATVYEV  335 (337)
T ss_dssp             ----EEETTSCEEEEEE
T ss_pred             ----EEeCCCeEEEEEE
Confidence                6777799999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-40  Score=279.92  Aligned_cols=253  Identities=13%  Similarity=0.153  Sum_probs=204.9

Q ss_pred             CCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC
Q 016547           30 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  109 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~  109 (387)
                      +.++|+|++|+| ++++||+|+.||.|+|||+++++          ......+.+|.+ +|++++|+|++++|++|+.|+
T Consensus         6 ~~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~----------~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~   73 (371)
T d1k8kc_           6 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDR   73 (371)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEEETTTTEEEEEETTS
T ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCC----------EEEEEEecCCCC-CEEEEEECCCCCEEEEEECCC
Confidence            457899999999 89999999999999999998761          135677899987 799999999999999999999


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|++||+.+...                                      .....+.+|...|.+++|+|++ +.|++++
T Consensus        74 ~i~vWd~~~~~~--------------------------------------~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s  114 (371)
T d1k8kc_          74 NAYVWTLKGRTW--------------------------------------KPTLVILRINRAARCVRWAPNE-KKFAVGS  114 (371)
T ss_dssp             CEEEEEEETTEE--------------------------------------EEEEECCCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             eEEEEeeccccc--------------------------------------cccccccccccccccccccccc-ccceeec
Confidence            999999975421                                      1224456788999999999998 8899999


Q ss_pred             CCCeEEEEEccCCCCc--eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCC------------CCCCCc
Q 016547          190 DDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS------------NGVGSP  255 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------------~~~~~~  255 (387)
                      .|+.+++|++......  .......|...|.+++|+| ++.+|++|+.||.|++||......            ...+..
T Consensus       115 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             ccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceee
Confidence            9999999998876532  2233456888999999999 999999999999999999875321            111345


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCe
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  335 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  335 (387)
                      +.....|...|.+++|+|+++. +++++.|+.|++||+...               ..+..+..|..+|.+++|+|++..
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~v~s~~fs~d~~~  257 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESSL  257 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTEE
T ss_pred             eeeccCccCcEEEEEeeccccc-ccccccCCcceEEeeecc---------------cceeeeecccccceeeeecCCCCE
Confidence            6667789999999999999986 679999999999999875               346667889999999999998865


Q ss_pred             EEEEecCCCCCCCCCceEEEEecC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++ ++        .|+.+++|...
T Consensus       258 la-~g--------~d~~~~~~~~~  272 (371)
T d1k8kc_         258 VA-AG--------HDCFPVLFTYD  272 (371)
T ss_dssp             EE-EE--------TTSSCEEEEEE
T ss_pred             EE-EE--------cCCceEEEEee
Confidence            43 32        24666666543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.2e-39  Score=266.13  Aligned_cols=287  Identities=13%  Similarity=0.186  Sum_probs=199.1

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-ccCCCceEEEEECCCCCEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ..+.||.++|++++|+| ++++|+||+.||+|++||++++            +....+. +|.. .|++++|+|+++++ 
T Consensus         6 ~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~h~~-~v~~v~~~~~g~~~-   70 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTG------------ISNRVFPDVHAT-MITGIKTTSKGDLF-   70 (299)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEECSSCSCSS-CEEEEEECTTSCEE-
T ss_pred             eEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEcCCCCC-cEEEEEeeccceee-
Confidence            45669999999999999 8999999999999999999988            4445553 5665 79999999999754 


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCC-----CCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-----GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      +++.|+.+++|+............... .......+.......     ....+.+++..  +....  .....+.+++|+
T Consensus        71 ~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~--~~~~~~~~~~~s  145 (299)
T d1nr0a2          71 TVSWDDHLKVVPAGGSGVDSSKAVANK-LSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEV--PISYNSSCVALS  145 (299)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEE-CSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEE--ECSSCEEEEEEC
T ss_pred             cccceeeEEEeccCCcccccccccccc-ccccccccccccccccccccccccccccccc--ccccc--cccccccccccc
Confidence            556699999999875432211110000 000000000000000     01112222211  11111  234567899999


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      |++ .++++++.||.|++||+++.+.. ......|...|++++|+| ++.+|++++.|+.|++||+.+...   ......
T Consensus       146 ~~~-~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~  219 (299)
T d1nr0a2         146 NDK-QFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFE---LAHTNS  219 (299)
T ss_dssp             TTS-CEEEEEETTSEEEEEEEETTEEE-EEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTE---ESCCCC
T ss_pred             ccc-ccccccccccccccccccccccc-cccccccccccccccccc-cccccccccccccccccccccccc---cccccc
Confidence            998 88999999999999999877622 233456889999999999 999999999999999999987211   223345


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                      +..|...|++++|+|++++ |++|+.||.|++||++.....            ........+...+..+.| +++++++ 
T Consensus       220 ~~~h~~~v~~l~~s~~~~~-l~sgs~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~v~~~~~-~~~~~l~-  284 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDH------------PIIIKGAHAMSSVNSVIW-LNETTIV-  284 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCTTSC------------CEEETTSSTTSCEEEEEE-EETTEEE-
T ss_pred             ccccccccccccccccccc-eEEEcCCCEEEEEECCCCCcc------------eEEEecCCCCCcEEEEEE-CCCCEEE-
Confidence            6678999999999999995 679999999999999875332            112222334456776665 4567766 


Q ss_pred             EecCCCCCCCCCceEEEEecC
Q 016547          339 SVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~  359 (387)
                             ||+.||+|++||+.
T Consensus       285 -------s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         285 -------SAGQDSNIKFWNVP  298 (299)
T ss_dssp             -------EEETTSCEEEEECC
T ss_pred             -------EEeCCCEEEEEecc
Confidence                   66667999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-37  Score=264.75  Aligned_cols=273  Identities=15%  Similarity=0.222  Sum_probs=206.6

Q ss_pred             eeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           23 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        23 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ....+.+|.++|++++|+| ++++|++|+.|++|+|||+.+..          ..+...+.+|.. .|++++|+|++++|
T Consensus        43 ~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~----------~~~~~~~~~~~~-~v~~i~~~p~~~~l  110 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRT----------WKPTLVILRINR-AARCVRWAPNEKKF  110 (371)
T ss_dssp             EEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTE----------EEEEEECCCCSS-CEEEEEECTTSSEE
T ss_pred             EEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccc----------cccccccccccc-cccccccccccccc
Confidence            3445568999999999999 88999999999999999998762          123445566776 69999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  182 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  182 (387)
                      ++++.|++|++|+++......                                    ........|...|.+++|+|++ 
T Consensus       111 ~~~s~d~~i~i~~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~v~~~p~~-  153 (371)
T d1k8kc_         111 AVGSGSRVISICYFEQENDWW------------------------------------VCKHIKKPIRSTVLSLDWHPNS-  153 (371)
T ss_dssp             EEEETTSSEEEEEEETTTTEE------------------------------------EEEEECTTCCSCEEEEEECTTS-
T ss_pred             eeecccCcceeeeeecccccc------------------------------------cccccccccccccccccccccc-
Confidence            999999999999987532211                                    1113446788999999999998 


Q ss_pred             eeEEEecCCCeEEEEEccCCCC----------------ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEecc
Q 016547          183 QEFCSVGDDSCLILWDARVGTS----------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      .+|++|+.|+.|++||......                ........|...|.+++|+| ++++|++++.|+.|++||+..
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeec
Confidence            7899999999999999865321                23445567888999999999 999999999999999999998


Q ss_pred             CCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC----C--------------
Q 016547          247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT----N--------------  308 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~--------------  308 (387)
                            +..+..+..|..+|.+++|+|+++ ++++|. |+.+++|+...............    .              
T Consensus       233 ------~~~~~~~~~~~~~v~s~~fs~d~~-~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (371)
T d1k8kc_         233 ------KMAVATLASETLPLLAVTFITESS-LVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL  304 (371)
T ss_dssp             ------TTEEEEEECSSCCEEEEEEEETTE-EEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred             ------ccceeeeecccccceeeeecCCCC-EEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecc
Confidence                  889999999999999999999997 566655 77777776654332221111000    0              


Q ss_pred             --------CCceeeeeeccCCCCeeEEEEccCCC---eEEEEecCCCCCCCCCceEEEEecCC
Q 016547          309 --------YPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       309 --------~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                              ...........|.+.|+++++.+.+.   ..++       |+|.||.|+|||++.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~-------T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC-------TTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE-------EEETTSEEEEEEHHH
T ss_pred             cceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEE-------EEcCCCeEEEEeCCc
Confidence                    00001111234889999999987543   2455       556669999999973

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-38  Score=266.37  Aligned_cols=299  Identities=18%  Similarity=0.244  Sum_probs=217.2

Q ss_pred             eeeeecCCCcE-EEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           24 KHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        24 ~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      +..+.||.+.| +|++|   ++++||||+.||+|+|||+.++            +++..+.+|.+ .|++++|+|+ .+|
T Consensus         5 ~~tL~GH~~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~------------~~~~~l~~H~~-~V~~l~~s~~-~~l   67 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHG-GIL   67 (355)
T ss_dssp             EEEEECCSSSCEEEEEE---ETTEEEEEETTTEEEEEETTTT------------EEEEEEECCSS-CEEEEEEETT-TEE
T ss_pred             cEEECCcCCCcEEEEEE---CCCEEEEEeCCCeEEEEECCCC------------cEEEEEECCCC-CEEEEEEcCC-CEE
Confidence            34567998875 77765   4679999999999999999988            78889999998 7999999985 589


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCccc------CCCCCCceeccCCCCCCCCCCCCCCCCC-----------------
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAK------SAGSSGSIIKQSPKPGDGNDKAADGPSV-----------------  159 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  159 (387)
                      ++|+.|++|++|++...............      .......  .......++.+.+|+....                 
T Consensus        68 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccc--eeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            99999999999999876433222211110      0000000  0011111222222222211                 


Q ss_pred             ------CCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe
Q 016547          160 ------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  233 (387)
Q Consensus       160 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  233 (387)
                            ........|...+..  +.+++ .+++++..|+.|++||+++++  .......+...+.++.++| .+.+++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~--~~~~~-~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~  219 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRT--VSGHG-NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISA  219 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEE--EEEET-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEE
T ss_pred             ccccccceeeeeeeccccccc--ccccc-ceeeeecccceeeeeeccccc--ceeeeeccccccccccccc-cceeeecc
Confidence                  112223334444443  34455 689999999999999998877  5667778888999999999 99999999


Q ss_pred             eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCcee
Q 016547          234 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  313 (387)
Q Consensus       234 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  313 (387)
                      +.|+.|++||.++      +..+..+.+|...|.+++++++   ++++++.||.|++||+++..                
T Consensus       220 ~~d~~i~i~d~~~------~~~~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~~----------------  274 (355)
T d1nexb2         220 SMDTTIRIWDLEN------GELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYS----------------  274 (355)
T ss_dssp             ETTSCEEEEETTT------CCEEEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEETTTCC----------------
T ss_pred             cccceEEeeeccc------cccccccccccccccccccccc---eeeeeecccccccccccccc----------------
Confidence            9999999999998      8899999999999999999754   46799999999999998742                


Q ss_pred             eeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhh-hhhccCceEEEeeecC
Q 016547          314 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  387 (387)
Q Consensus       314 ~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~f~P  387 (387)
                       ..+..|...+..+.+.+.++.+++++        .||.|+|||++      +++++. .+.+|.++|++++|+|
T Consensus       275 -~~~~~~~~~~~~~~~~~~~~~~l~~g--------~d~~i~vwd~~------tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         275 -RKFSYHHTNLSAITTFYVSDNILVSG--------SENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             -EEEEEECTTCCCCCEEEECSSEEEEE--------ETTEEEEEETT------TCCBCCSCTTTTCSEEEEEEEET
T ss_pred             -eecccccCCceEEEEEcCCCCEEEEE--------eCCEEEEEECC------CCCEEEEEecCCCCCEEEEEEcC
Confidence             22345666666665444344555432        35899999999      788875 5788999999999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-36  Score=257.80  Aligned_cols=254  Identities=22%  Similarity=0.368  Sum_probs=199.9

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      ...+|...|++++|+| ++++|++|+.||.|++||...+            +....+.+|.. .|.++.+++++..++++
T Consensus       116 ~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~~~~~  181 (388)
T d1erja_         116 SSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQ-DIYSLDYFPSGDKLVSG  181 (388)
T ss_dssp             ---CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred             cccCCCCCEEEEEECC-CCCcceeccccccccccccccc------------ccccccccccc-ccccccccccccccccc
Confidence            4456889999999999 8999999999999999999988            67788888987 79999999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.++.+++||..+....                                        .... +.....++.+.+..+.+|
T Consensus       182 ~~~~~i~~~d~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~~~~~~l  220 (388)
T d1erja_         182 SGDRTVRIWDLRTGQCS----------------------------------------LTLS-IEDGVTTVAVSPGDGKYI  220 (388)
T ss_dssp             ETTSEEEEEETTTTEEE----------------------------------------EEEE-CSSCEEEEEECSTTCCEE
T ss_pred             ccceeeeeeeccccccc----------------------------------------cccc-cccccccccccCCCCCeE
Confidence            99999999998754221                                        2222 334455666666544899


Q ss_pred             EEecCCCeEEEEEccCCCCce-----eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC------CCCC
Q 016547          186 CSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GVGS  254 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~  254 (387)
                      ++++.|+.|++||.+++....     .....+|...|++++|+| ++++|++++.||.|++||++.....      ....
T Consensus       221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  299 (388)
T d1erja_         221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  299 (388)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence            999999999999998876211     112346888999999999 9999999999999999999864221      1133


Q ss_pred             ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE-----
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-----  329 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----  329 (387)
                      .......|...|.+++|+|++++ |++|+.||.|++||+++.               +++..+.+|.+.|+++++     
T Consensus       300 ~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~~~l~~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         300 CEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPLLMLQGHRNSVISVAVANGSS  363 (388)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSSCT
T ss_pred             eeeecccccceEEEEEECCCCCE-EEEEeCCCEEEEEECCCC---------------cEEEEEeCCCCCEEEEEEecCcc
Confidence            44556678899999999999996 579999999999999875               456778899999999975     


Q ss_pred             -ccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          330 -NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       330 -~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                       +|++.+|+        ||+.||+|+||+++
T Consensus       364 ~spd~~~l~--------s~s~Dg~I~iW~~~  386 (388)
T d1erja_         364 LGPEYNVFA--------TGSGDCKARIWKYK  386 (388)
T ss_dssp             TCTTCEEEE--------EEETTSEEEEEEEE
T ss_pred             cCCCCCEEE--------EEeCCCEEEEEeee
Confidence             56777666        66677999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=248.31  Aligned_cols=245  Identities=20%  Similarity=0.389  Sum_probs=215.3

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  105 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~  105 (387)
                      .+.+|.+.|.+++|+| ++.+++++..++.+.+|+....            .....+.+|.. .+.++.|+++++.++++
T Consensus        54 ~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  119 (317)
T d1vyhc1          54 TLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIMPNGDHIVSA  119 (317)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEECSSSSEEEEE
T ss_pred             EEeCCCCcEEEEeeec-cccccccccccccccccccccc------------ccccccccccc-cceeeeccCCCceEEee
Confidence            4457999999999999 8899999999999999998887            55566777776 68899999999999999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeE
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  185 (387)
                      +.|+.+++||++++.                                        ....+..|...+.+++|+|++ .+|
T Consensus       120 ~~d~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~l  158 (317)
T d1vyhc1         120 SRDKTIKMWEVQTGY----------------------------------------CVKTFTGHREWVRMVRPNQDG-TLI  158 (317)
T ss_dssp             ETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECTTS-SEE
T ss_pred             ccCcceeEeecccce----------------------------------------eeeEEccCCCcceeeecccCC-CEE
Confidence            999999999997542                                        335677899999999999998 889


Q ss_pred             EEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-------------------CCCeEEEeeCCCeEEEEEecc
Q 016547          186 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-------------------DDNLILTGSADNSVRMFDRRN  246 (387)
Q Consensus       186 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~l~~~~~dg~i~~~d~~~  246 (387)
                      ++++.|+.|++|++.+.+  ....+..|...+.+++++|.                   .+.++++++.||.|++||+++
T Consensus       159 ~~~~~d~~v~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  236 (317)
T ss_dssp             EEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEEeCCCeEEEEeeccce--eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC
Confidence            999999999999999887  66777888999999998872                   235789999999999999998


Q ss_pred             CCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          247 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                            ++++.++.+|...|.+++|+|++++ |++++.||.|++||+++.               +++..+.+|...|++
T Consensus       237 ------~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~h~~~V~~  294 (317)
T d1vyhc1         237 ------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTLNAHEHFVTS  294 (317)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEEECCSSCEEE
T ss_pred             ------CcEEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCC---------------cEEEEEcCCCCCEEE
Confidence                  8999999999999999999999985 579999999999999875               346677899999999


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEe
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~  357 (387)
                      ++|+|++++|+        ||+.||+|+|||
T Consensus       295 ~~~s~~~~~l~--------s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVV--------TGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEE--------EEETTSEEEEEC
T ss_pred             EEEcCCCCEEE--------EEeCCCeEEEeC
Confidence            99999999887        777789999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-36  Score=252.85  Aligned_cols=302  Identities=16%  Similarity=0.231  Sum_probs=213.1

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ...+.||.+.|.+ ++++ ++++||||+.||+|+|||+.++            +++..+.+|.+ .|.+++|+++  +|+
T Consensus         9 ~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~------------~~~~~~~~h~~-~V~~v~~~~~--~l~   71 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMRDN--III   71 (342)
T ss_dssp             CEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEETT--EEE
T ss_pred             CEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCC------------CEEEEEeCCCC-CEEEEEeCCC--ccc
Confidence            3456699999854 2344 6789999999999999999988            78888999998 7999999864  999


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +|+.|+.+++|+................................+..+.+++....+....+..+......  ..+.. .
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~  148 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDG-R  148 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECS-S
T ss_pred             cceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccccee--ecccc-c
Confidence            99999999999988654332221111000000000000000111223333444444444444444333332  33333 5


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      .+++++.|+.|++||.+...  ....+.+|...+..+.  + ++.++++++.||.|++||++.      .+++..+.+|.
T Consensus       149 ~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~--~-~~~~l~s~~~dg~i~~~d~~~------~~~~~~~~~~~  217 (342)
T d2ovrb2         149 RVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQ--F-DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQ  217 (342)
T ss_dssp             CEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEE--E-CSSEEEEEETTSCEEEEETTT------CCEEEEECCCC
T ss_pred             eeeeecCCCeEEEeecccce--eeEEEcCccccccccc--C-CCCEEEEEeCCCeEEEeeccc------ceeeeEecccc
Confidence            78899999999999998776  5667777776665554  4 678999999999999999998      88999999999


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  343 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d  343 (387)
                      ..+.+++++++   +|++++.|+.|++||+......            ..+.....|...+.++.+++  ++++      
T Consensus       218 ~~v~~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~------  274 (342)
T d2ovrb2         218 SLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNK--NFVI------  274 (342)
T ss_dssp             SCEEEEEEETT---EEEEEETTSCEEEEETTTCCEE------------EEECSTTSCSSCEEEEEECS--SEEE------
T ss_pred             cceeEEecCCC---EEEEEcCCCEEEEEeccccccc------------ccccccceeeeceeecccCC--CeeE------
Confidence            99999988764   5789999999999999875332            12333345667788877765  4454      


Q ss_pred             CCCCCCCceEEEEecCCCcccccchhhhhh-----hccCceEEEeeecC
Q 016547          344 CDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP  387 (387)
Q Consensus       344 ~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~f~P  387 (387)
                        +|+.||+|++||++      ++++++++     .+|.+.|++++|+|
T Consensus       275 --s~s~Dg~i~iwd~~------tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         275 --TSSDDGTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             --EEETTSEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             --EEcCCCEEEEEECC------CCCEEEEEecccCCCCCCCEEEEEECC
Confidence              55566999999999      67777655     46888999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=249.47  Aligned_cols=261  Identities=15%  Similarity=0.201  Sum_probs=195.4

Q ss_pred             eeeeecC-CCcEEEEEecCC-CCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE
Q 016547           24 KHKTIIH-PGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  101 (387)
Q Consensus        24 ~~~~~~h-~~~v~~i~~~~~-~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~  101 (387)
                      .....+| ...|++++|+|. ++++||+|+.||+|+|||+...+.......    .....+..|.+ +|.+++|++++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~----~~~~~~~~~~~-~v~~v~~s~~~~~  129 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV----NVKSEFQVLAG-PISDISWDFEGRR  129 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE----EEEEEEECCSS-CEEEEEECTTSSE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec----ccccccccccC-cEEEEEECCCCCc
Confidence            3455577 468999999983 678999999999999999987643322111    12234566776 7999999999999


Q ss_pred             EEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEcc
Q 016547          102 VLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  179 (387)
Q Consensus       102 l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  179 (387)
                      |++++  .++.+++|+.+++.                                        .+..+.+|...|.+++|+|
T Consensus       130 l~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~  169 (325)
T d1pgua1         130 LCVVGEGRDNFGVFISWDSGN----------------------------------------SLGEVSGHSQRINACHLKQ  169 (325)
T ss_dssp             EEEEECCSSCSEEEEETTTCC----------------------------------------EEEECCSCSSCEEEEEECS
T ss_pred             cceeeccccceEEEEeecccc----------------------------------------cceeeeecccccccccccc
Confidence            88765  46789999987532                                        3356678999999999999


Q ss_pred             CCCeeEEEecCCCeEEEEEccCCCCce-eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEE
Q 016547          180 SSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       180 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      +++.++++++.|+.+++||....+... ......|...|++++|+|..+.+|++++.||.|++||+++      ++.+..
T Consensus       170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~------~~~~~~  243 (325)
T d1pgua1         170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS------GEFLKY  243 (325)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT------CCEEEE
T ss_pred             cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc------cccccc
Confidence            986678899999999999987765211 1223467788999999995578999999999999999998      889999


Q ss_pred             eccccceEEEEEEc---CCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC--CeeEEEEccCC
Q 016547          259 FEGHSAAVLCVQWS---PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASD  333 (387)
Q Consensus       259 ~~~~~~~i~~~~~~---~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  333 (387)
                      +.+|...+.++.|+   |++++ |++++.|+.|+|||++..               +++..+..|..  .+..+++.+.+
T Consensus       244 l~~~~~~v~~~~~s~~~~dg~~-l~s~s~D~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  307 (325)
T d1pgua1         244 IEDDQEPVQGGIFALSWLDSQK-FATVGADATIRVWDVTTS---------------KCVQKWTLDKQQLGNQQVGVVATG  307 (325)
T ss_dssp             CCBTTBCCCSCEEEEEESSSSE-EEEEETTSEEEEEETTTT---------------EEEEEEECCTTCGGGCEEEEEEEE
T ss_pred             ccccccccccceeeeeccCCCE-EEEEeCCCeEEEEECCCC---------------CEEEEEEecCCcccCeEEEEEECC
Confidence            99888877655555   67775 579999999999999874               23444444433  44455554443


Q ss_pred             CeEEEEecCCCCCCCCCceEEEEec
Q 016547          334 PWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       334 ~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +..++       +|+.||+|++||+
T Consensus       308 ~~~l~-------s~s~dg~i~vwdl  325 (325)
T d1pgua1         308 NGRII-------SLSLDGTLNFYEL  325 (325)
T ss_dssp             TTEEE-------EEETTSCEEEEET
T ss_pred             CCEEE-------EEECCCEEEEEEC
Confidence            33344       5555699999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-35  Score=248.88  Aligned_cols=234  Identities=16%  Similarity=0.283  Sum_probs=196.4

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      +..++|+||.+ .|++++|+|++++|++|+.||+|++||+.++.                                    
T Consensus        46 ~~~~tL~GH~~-~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~------------------------------------   88 (340)
T d1tbga_          46 RTRRTLRGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN------------------------------------   88 (340)
T ss_dssp             CEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTTE------------------------------------
T ss_pred             eeeEEECCCCC-CEEEEEECCCCCEEEEEECCCceeeeecccce------------------------------------
Confidence            56678999998 79999999999999999999999999997543                                    


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc--ee---------------------------
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VI---------------------------  207 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~---------------------------  207 (387)
                          .+..+..|...|.+++|+|++ .++++++.|+.+.+|+.......  ..                           
T Consensus        89 ----~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (340)
T d1tbga_          89 ----KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
T ss_dssp             ----EEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETT
T ss_pred             ----eEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceeccccccccccccccccccccccccc
Confidence                336677899999999999998 88999999999999997654311  00                           


Q ss_pred             --------------EEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcC
Q 016547          208 --------------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  273 (387)
Q Consensus       208 --------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  273 (387)
                                    .....+...+....+.+ ...++++|+.|+.|++||+++      ++++..+.+|...|++++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~~h~~~i~~v~~~p  236 (340)
T d1tbga_         164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTGHESDINAICFFP  236 (340)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCC------CcEEEEEeCCCCCeEEEEECC
Confidence                          11122344566677777 889999999999999999998      889999999999999999999


Q ss_pred             CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceE
Q 016547          274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL  353 (387)
Q Consensus       274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i  353 (387)
                      ++++ |++++.|+.|++||++.....             .......+...|++++|+|++++++        +|+.||.|
T Consensus       237 ~~~~-l~s~s~d~~i~~~~~~~~~~~-------------~~~~~~~~~~~i~~~~~s~~~~~l~--------~g~~dg~i  294 (340)
T d1tbga_         237 NGNA-FATGSDDATCRLFDLRADQEL-------------MTYSHDNIICGITSVSFSKSGRLLL--------AGYDDFNC  294 (340)
T ss_dssp             TSSE-EEEEETTSCEEEEETTTTEEE-------------EEECCTTCCSCEEEEEECSSSCEEE--------EEETTSCE
T ss_pred             CCCE-EEEEeCCCeEEEEeecccccc-------------cccccccccCceEEEEECCCCCEEE--------EEECCCEE
Confidence            9985 679999999999999875321             1233456777899999999999887        67777999


Q ss_pred             EEEecCCCcccccchhhhhhhccCceEEEeeecC
Q 016547          354 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       354 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ++||+.      +++++.++.+|.++|++++|+|
T Consensus       295 ~iwd~~------~~~~~~~~~~H~~~V~~l~~s~  322 (340)
T d1tbga_         295 NVWDAL------KADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             EEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence            999999      7889999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=248.60  Aligned_cols=267  Identities=15%  Similarity=0.200  Sum_probs=202.1

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCC-cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC--CCCEEEEecC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGK  107 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~--~~~~l~s~~~  107 (387)
                      .+.+++++|+| +++.||.++.+. .|+.|+....          .......+.+|....|++++|+|  ++.+|++|+.
T Consensus        17 ~~~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~----------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~   85 (325)
T d1pgua1          17 RNFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDS----------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE   85 (325)
T ss_dssp             TTCCCCCEEET-TTTEEEEEETTEEEEEECCSSCC----------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCC----------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC
Confidence            34568999999 777888775543 3556665443          22456778898776899999998  5789999999


Q ss_pred             CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEE
Q 016547          108 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  187 (387)
Q Consensus       108 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  187 (387)
                      ||+|++||+...........                                .....+..|.++|.+++|++++ ..+++
T Consensus        86 Dg~i~iWd~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~v~~v~~s~~~-~~l~~  132 (325)
T d1pgua1          86 SGKVIVWGWTFDKESNSVEV--------------------------------NVKSEFQVLAGPISDISWDFEG-RRLCV  132 (325)
T ss_dssp             TSEEEEEEEEEEGGGTEEEE--------------------------------EEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred             CCCEEEeeecCCcceeeeec--------------------------------ccccccccccCcEEEEEECCCC-Cccce
Confidence            99999999976533221110                                1113456788999999999998 55555


Q ss_pred             ec--CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe---ccc
Q 016547          188 VG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF---EGH  262 (387)
Q Consensus       188 ~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~  262 (387)
                      ++  .++.+++|+.++++  ....+.+|...|++++|+|....++++++.|+.+++||...      .+....+   ..|
T Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~  204 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN--SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQ  204 (325)
T ss_dssp             EECCSSCSEEEEETTTCC--EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCT
T ss_pred             eeccccceEEEEeecccc--cceeeeecccccccccccccccceEEEeecccccccccccc------cccceecccccCC
Confidence            43  57789999998877  67778889999999999993344578899999999999886      4444443   457


Q ss_pred             cceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc---cCCCeEEEE
Q 016547          263 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN---ASDPWTVVS  339 (387)
Q Consensus       263 ~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~s  339 (387)
                      ...|.+++|+|++..++++++.|+.|++||++..               ..+..+.+|...+.++.|+   |++++|+  
T Consensus       205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---------------~~~~~l~~~~~~v~~~~~s~~~~dg~~l~--  267 (325)
T d1pgua1         205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---------------EFLKYIEDDQEPVQGGIFALSWLDSQKFA--  267 (325)
T ss_dssp             TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---------------CEEEECCBTTBCCCSCEEEEEESSSSEEE--
T ss_pred             CCccEEeeeccccceeccccccccceeeeeeccc---------------cccccccccccccccceeeeeccCCCEEE--
Confidence            7889999999986557889999999999999875               3456677788877766666   6777776  


Q ss_pred             ecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCc
Q 016547          340 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  378 (387)
Q Consensus       340 ~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  378 (387)
                            +++.|+.|+|||+.      +++++..+..|..
T Consensus       268 ------s~s~D~~i~iwd~~------~~~~~~~~~~~~~  294 (325)
T d1pgua1         268 ------TVGADATIRVWDVT------TSKCVQKWTLDKQ  294 (325)
T ss_dssp             ------EEETTSEEEEEETT------TTEEEEEEECCTT
T ss_pred             ------EEeCCCeEEEEECC------CCCEEEEEEecCC
Confidence                  66677999999999      6788777665554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=237.64  Aligned_cols=277  Identities=21%  Similarity=0.368  Sum_probs=204.9

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      ..+|...|+|++|   ++++||||+.||+|+|||++++            +++..+.+|.+ .|++++|  ++++|++|+
T Consensus        11 ~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~------------~~~~~l~~H~~-~V~~v~~--~~~~l~s~s   72 (293)
T d1p22a2          11 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITGS   72 (293)
T ss_dssp             CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEEE
T ss_pred             cCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEeeeec--ccceeeccc
Confidence            3468899999875   6789999999999999999988            78889999998 6888887  678999999


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccC---CCCCCceeccCCCCCCCCCCCCCCCC---CCCceeecCCCCCeEEEEEccC
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKS---AGSSGSIIKQSPKPGDGNDKAADGPS---VGPRGIYNGHEDTVEDVTFCPS  180 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~  180 (387)
                      .|+.|++|++..+.............   .........   ....+...+++...   ......+..|...+..+.+.+.
T Consensus        73 ~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  149 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT---CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK  149 (293)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEE---EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccceee---cccccceeEeeccccccccccccccccccccccceeccc
Confidence            99999999998765433322211110   000111111   11122233333222   2234456678888888887654


Q ss_pred             CCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          181 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       181 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                         .+++++.|+.|++||+++.+  ....+.++...+..+.++   +..+++++.||.|++||+++      ...+..+.
T Consensus       150 ---~~~~~s~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~------~~~~~~~~  215 (293)
T d1p22a2         150 ---YIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC------GACLRVLE  215 (293)
T ss_dssp             ---EEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEEC
T ss_pred             ---ccccccCCCceeeecCCCCc--EEEEEcccccccccccCC---CCeEEEecCCCEEEEEeccc------ceeeeeec
Confidence               57888999999999999887  667778888888887775   46899999999999999998      88889999


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      +|...+..+.  +++. .|++++.||.|++||+.........      .....+..+.+|.+.|++++|+  +.+|+   
T Consensus       216 ~~~~~v~~~~--~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~H~~~V~~v~~d--~~~l~---  281 (293)
T d1p22a2         216 GHEELVRCIR--FDNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQFD--EFQIV---  281 (293)
T ss_dssp             CCSSCEEEEE--CCSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEEC--SSCEE---
T ss_pred             ccceeeeecc--ccce-EEEEEcCCCEEEEEECCCCcccccc------CCceeeEEecCCCCCEEEEEEc--CCEEE---
Confidence            8988887654  5566 4679999999999998764332211      1224567788999999999995  45666   


Q ss_pred             cCCCCCCCCCceEEEEe
Q 016547          341 SDDCDSTGGGGTLQIWR  357 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~  357 (387)
                           |||.||+|+|||
T Consensus       282 -----s~s~Dg~i~iWD  293 (293)
T d1p22a2         282 -----SSSHDDTILIWD  293 (293)
T ss_dssp             -----ECCSSSEEEEEC
T ss_pred             -----EEecCCEEEEeC
Confidence                 777889999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=255.90  Aligned_cols=290  Identities=12%  Similarity=0.150  Sum_probs=196.3

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC-----ceEEEEECC-CCCE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-----AEFALAMCP-TEPY  101 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----~v~~~~~~~-~~~~  101 (387)
                      .+|.+.|+++++++   ++++||+.|++|+|||..+.+.....      ........|...     ....+..+. ++.+
T Consensus        11 ~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_          11 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPK------DKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGG------GGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             CcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCccc------ceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            47999999999764   58999999999999998776432211      122233333331     111222222 2346


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +++++.||.|++|++.............                              ........+...+..++|.++.
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~  131 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEK------------------------------LDLLDSDMKKHSFWALKWGASN  131 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEE------------------------------ECCSCTTGGGSCEEEEEEECCC
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccc------------------------------cceeeeccCCCceEEEEEecCC
Confidence            7899999999999987543211110000                              0001112244567778887653


Q ss_pred             ----CeeEEEecCCCeEEEEEccCCCC----------c------eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEE
Q 016547          182 ----AQEFCSVGDDSCLILWDARVGTS----------P------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  241 (387)
Q Consensus       182 ----~~~l~~~~~dg~i~iwd~~~~~~----------~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~  241 (387)
                          ..++++++.||.+++||+.....          .      .......+...+++++|+| ++ +|++|+.||.|++
T Consensus       132 ~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~i  209 (393)
T d1sq9a_         132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQI  209 (393)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEE
T ss_pred             CcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEE
Confidence                26789999999999999864321          0      0111223456688999999 65 8999999999999


Q ss_pred             EEeccCCCCCCCCceEE------eccccceEEEEEEcCCCCeeEEEecCCC---eEEEEeCCCCCceeccCCCCCCCCce
Q 016547          242 FDRRNLTSNGVGSPINK------FEGHSAAVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~ll~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                      ||+++      ++++..      +.+|..+|.+++|+|++++ |++|+.|+   .|++||+............  .....
T Consensus       210 wd~~~------~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~-l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~--~~~~~  280 (393)
T d1sq9a_         210 SELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVP--THSSQ  280 (393)
T ss_dssp             EETTT------TEEEEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             Eeecc------cccccccccccccccccceEEEcccccccce-eeeecCCCCcceeeecccccceeeeeeccc--ccccc
Confidence            99987      555544      4568899999999999995 67888886   5999999885443221111  11112


Q ss_pred             eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEE
Q 016547          313 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  381 (387)
Q Consensus       313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~  381 (387)
                      ....+.+|...|++++|+|++++|+        |||.|++|+|||+.      +++++.++.+|.+.|.
T Consensus       281 ~~~~~~gH~~~V~~l~fspd~~~l~--------S~s~D~~v~vWd~~------~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         281 ASLGEFAHSSWVMSLSFNDSGETLC--------SAGWDGKLRFWDVK------TKERITTLNMHCDDIE  335 (393)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEE--------EEETTSEEEEEETT------TTEEEEEEECCGGGCS
T ss_pred             ceeeeecccCceeeeccCCCCCeeE--------EECCCCEEEEEECC------CCCEEEEECCcCCccc
Confidence            3444568999999999999999877        77777999999999      8999999999988775

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-34  Score=236.67  Aligned_cols=269  Identities=12%  Similarity=0.177  Sum_probs=188.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.||.++|++++|+|     |+||+.||+|++||+.+.                 ..+|.. .|.+++++++ ..+++
T Consensus         7 ~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----------------~~~h~~-~V~~~~~~~~-~~~~s   62 (287)
T d1pgua2           7 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----------------HQDHSN-LIVSLDNSKA-QEYSS   62 (287)
T ss_dssp             EEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----------------ECCCCS-CEEEEECCST-TCCEE
T ss_pred             EEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----------------CCCCCC-CEEEEEecCC-CeEEE
Confidence            35668999999999987     899999999999998765                 357876 6999999865 46789


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.|+++++|++..........  . .............   ....+..+..........+..+ ..+  .++++++ ..
T Consensus        63 ~s~D~~v~~w~~~~~~~~~~~~--~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~-~~  132 (287)
T d1pgua2          63 ISWDDTLKVNGITKHEFGSQPK--V-ASANNDGFTAVLT---NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQ-NY  132 (287)
T ss_dssp             EETTTEEEETTEEEEECSSCEE--E-EEECSSSEEEEEE---TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECS-SE
T ss_pred             Eeecccccccccccccccccee--e-eeeccCCceEEEe---ecccceeeeccceeeeeecccc-cee--eeeeccC-cc
Confidence            9999999999987543211100  0 0001111111111   1112223333444444444333 233  4556666 44


Q ss_pred             EEEec-CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceE-Eeccc
Q 016547          185 FCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGH  262 (387)
Q Consensus       185 l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~  262 (387)
                      +++++ .++.+++|++...+. .......|...+++++|+| ++.+|++|+.||.|++||+.+      +.... .+..|
T Consensus       133 ~~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~~h  204 (287)
T d1pgua2         133 VAVGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQS------REVKTSRWAFR  204 (287)
T ss_dssp             EEEEETTTSCEEEEETTEEEE-EEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEECCSCCC
T ss_pred             eeeeccccceeeeeeccccce-eeeeeeccCCceeEEEecc-Cccccccccccccccceeecc------ccccccccccc
Confidence            55555 456799999876541 2223345778899999999 999999999999999999987      54433 46789


Q ss_pred             cceEEEEEEcCCCC---------eeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCC
Q 016547          263 SAAVLCVQWSPDKS---------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  333 (387)
Q Consensus       263 ~~~i~~~~~~~~~~---------~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  333 (387)
                      ...|.+++|+|.+.         .++++|+.|+.|++||++...+              .+..+.+|...|++++|+|++
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--------------~~~~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--------------IIKALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--------------CEEETTSSTTCEEEEEEEETT
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--------------EEEEeCCCCCCeEEEEECCCC
Confidence            99999999998642         2578999999999999986432              355667899999999999976


Q ss_pred             CeEEEEecCCCCCCCCCceEEEEec
Q 016547          334 PWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       334 ~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                       .++        |+|.||+|++|++
T Consensus       271 -~l~--------s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 -TLV--------SSGADACIKRWNV  286 (287)
T ss_dssp             -EEE--------EEETTSCEEEEEE
T ss_pred             -EEE--------EEECCCeEEEEEE
Confidence             455        5566699999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-33  Score=234.49  Aligned_cols=290  Identities=10%  Similarity=0.126  Sum_probs=199.0

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCC-CCEEEEe
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG  105 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~-~~~l~s~  105 (387)
                      ..+|.+.|++|+|+| ++++||+|+.||+|+|||++.....         .......+|.. +|.+++|+|+ +.+|++|
T Consensus         7 ~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~---------~~~~~~~~h~~-~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_           7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKH-PLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSS-CEEEEEEEESSSEEEEEE
T ss_pred             CCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcc---------eEEEEecCCCC-CEEEEEEeCCCCCEEEEc
Confidence            347999999999999 8899999999999999999876211         12233346776 7999999986 4579999


Q ss_pred             cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCee
Q 016547          106 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       106 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  184 (387)
                      +.||.|++|++......                                        .... .+........+.++. ..
T Consensus        76 ~~d~~v~~w~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~-~~  114 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSF----------------------------------------QALTNNEANLGICRICKYGD-DK  114 (342)
T ss_dssp             ETTSCEEEECSSSSSSE----------------------------------------EECBSCCCCSCEEEEEEETT-TE
T ss_pred             ccccceeeeeccccccc----------------------------------------cccccccccccccccccccc-cc
Confidence            99999999999764322                                        1112 222333444455555 78


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEe--ec--cCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVE--KA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      +++++.++.+++||++..........  ..  .......+.+.+ .+..+++++.||.|++||++....   ........
T Consensus       115 ~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~  190 (342)
T d1yfqa_         115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCED---DNGTIEES  190 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTT---CCCEEEEC
T ss_pred             ccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcc---cceeeeec
Confidence            99999999999999987553222221  11  122344566777 889999999999999999987322   12222333


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  340 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~  340 (387)
                      .+...+.+..+.+.....+++++.||.+.+|++.........................+|...|++++|+|++++|+   
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la---  267 (342)
T d1yfqa_         191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY---  267 (342)
T ss_dssp             SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE---
T ss_pred             ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE---
Confidence            44555666666665544678999999999999876433322111110000111122345777899999999999877   


Q ss_pred             cCCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cCceEEEeeec
Q 016547          341 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSK  386 (387)
Q Consensus       341 s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f~  386 (387)
                           ||+.||.|++||+.      +++.+.++.. |...+.+++++
T Consensus       268 -----sg~~Dg~v~vWD~~------~~~~l~~~~~~~~~~~~~~s~~  303 (342)
T d1yfqa_         268 -----TAGSDGIISCWNLQ------TRKKIKNFAKFNEDSVVKIACS  303 (342)
T ss_dssp             -----EEETTSCEEEEETT------TTEEEEECCCCSSSEEEEEEEC
T ss_pred             -----EECCCCEEEEEECC------CCcEEEEecCCCCCEEEEEEeC
Confidence                 77788999999999      6777777754 55566666554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.1e-32  Score=224.48  Aligned_cols=266  Identities=14%  Similarity=0.146  Sum_probs=174.7

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcc-----cCCCCCCceeccCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA-----KSAGSSGSIIKQSPKPGDGND  151 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  151 (387)
                      ...+.+.||.+ .|++++|+|++++|++|+.||+|++||++++...........     ......+.+...   ..+..+
T Consensus         3 ~~~~~~~GH~~-~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~---~~d~~v   78 (299)
T d1nr0a2           3 SIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV---SWDDHL   78 (299)
T ss_dssp             EEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE---ETTTEE
T ss_pred             ccceEcCCCCC-CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc---cceeeE
Confidence            45678999998 799999999999999999999999999987654333211100     000011111111   112233


Q ss_pred             CCCCCCCCCC--ceee-cCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC
Q 016547          152 KAADGPSVGP--RGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  228 (387)
Q Consensus       152 ~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (387)
                      .+++......  .... ..+...+.+++|+|++ .+++++ .++.+.+|+....    ..  ......+.+++|+| +++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~~----~~--~~~~~~~~~~~~s~-~~~  149 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYSHGKL----TE--VPISYNSSCVALSN-DKQ  149 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEETTEE----EE--EECSSCEEEEEECT-TSC
T ss_pred             EEeccCCcccccccccccccccccccccccccc-cccccc-ccccccccccccc----cc--cccccccccccccc-ccc
Confidence            3333222211  1111 1245566677777766 434333 3456777763321    11  12345678899999 999


Q ss_pred             eEEEeeCCCeEEEEEeccCCCCCCCCceE-EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCC
Q 016547          229 LILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  307 (387)
Q Consensus       229 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~  307 (387)
                      +|++|+.||.|++||+++      ..... ....|...|++++|+|++.+ +++++.|+.|++||+......        
T Consensus       150 ~l~~g~~dg~i~~~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~--------  214 (299)
T d1nr0a2         150 FVAVGGQDSKVHVYKLSG------ASVSEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFEL--------  214 (299)
T ss_dssp             EEEEEETTSEEEEEEEET------TEEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEE--------
T ss_pred             cccccccccccccccccc------cccccccccccccccccccccccccc-ccccccccccccccccccccc--------
Confidence            999999999999999987      44332 34468899999999999996 568999999999999875332        


Q ss_pred             CCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhc-cCceEEEeeec
Q 016547          308 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSK  386 (387)
Q Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~f~  386 (387)
                          .....+.+|...|++++|+|++++++        +|+.||.|++||+...    ....+..... +...|.++.|+
T Consensus       215 ----~~~~~~~~h~~~v~~l~~s~~~~~l~--------sgs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~  278 (299)
T d1nr0a2         215 ----AHTNSWTFHTAKVACVSWSPDNVRLA--------TGSLDNSVIVWNMNKP----SDHPIIIKGAHAMSSVNSVIWL  278 (299)
T ss_dssp             ----SCCCCCCCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTCT----TSCCEEETTSSTTSCEEEEEEE
T ss_pred             ----cccccccccccccccccccccccceE--------EEcCCCEEEEEECCCC----CcceEEEecCCCCCcEEEEEEC
Confidence                12344577999999999999999877        7777799999999842    1222222233 44567776654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-31  Score=225.99  Aligned_cols=282  Identities=16%  Similarity=0.247  Sum_probs=198.9

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-CceEEEEECCCCCEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~~~~~~~l  102 (387)
                      ...+.+|.++|++++|+| + .+|++|+.||+|++|+....            ........+.. .......+.+++.++
T Consensus        46 ~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (355)
T d1nexb2          46 LLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVWDIKKG------------CCTHVFEGHNSTVRCLDIVEYKNIKYI  111 (355)
T ss_dssp             EEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEEETTTT------------EEEEEECCCSSCEEEEEEEEETTEEEE
T ss_pred             EEEEECCCCCEEEEEEcC-C-CEEEEEeccccccccccccc------------cccccccccccccccccccccccccee
Confidence            345568999999999988 4 47999999999999999887            33333332222 234566778899999


Q ss_pred             EEecCCCeEEEEEcCCCcCccccCCCccc-----CCCCCC-----------ce-------eccCCCCCCCCCCCCCCCCC
Q 016547          103 LSGGKDKSVVLWSIQDHITSSATDPATAK-----SAGSSG-----------SI-------IKQSPKPGDGNDKAADGPSV  159 (387)
Q Consensus       103 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~-----------~~-------~~~~~~~~~~~~~~~~~~~~  159 (387)
                      ++++.|+.|++||+.+.............     ......           ..       ........+..+..++....
T Consensus       112 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~  191 (355)
T d1nexb2         112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM  191 (355)
T ss_dssp             EEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             eeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccc
Confidence            99999999999999876433221111000     000000           00       00111223455666777777


Q ss_pred             CCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547          160 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  239 (387)
Q Consensus       160 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  239 (387)
                      +.+....++...+.++.++|++ ..+++++.|+.|++||++++.  ....+.+|...|.++++++   ++|++|+.||.|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i  265 (355)
T d1nexb2         192 KCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSD---KFLVSAAADGSI  265 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCC--EEEEECCCSSCCCEEEECS---SEEEEECTTSEE
T ss_pred             cceeeeeccccccccccccccc-eeeecccccceEEeeeccccc--ccccccccccccccccccc---ceeeeeeccccc
Confidence            7778888899999999999998 789999999999999999887  6778889999999999865   689999999999


Q ss_pred             EEEEeccCCCCCCCCceEEeccccceEEEEE-EcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeec
Q 016547          240 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ-WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  318 (387)
Q Consensus       240 ~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (387)
                      ++||+++      ...  .+..|...+.++. +++++. ++++|+ |+.|+|||++++...              ...+.
T Consensus       266 ~iwd~~~------~~~--~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~~i~vwd~~tg~~~--------------~~~~~  321 (355)
T d1nexb2         266 RGWDAND------YSR--KFSYHHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLV--------------HANIL  321 (355)
T ss_dssp             EEEETTT------CCE--EEEEECTTCCCCCEEEECSS-EEEEEE-TTEEEEEETTTCCBC--------------CSCTT
T ss_pred             ccccccc------cce--ecccccCCceEEEEEcCCCC-EEEEEe-CCEEEEEECCCCCEE--------------EEEec
Confidence            9999987      443  3444556666554 556665 565654 899999999875221              12356


Q ss_pred             cCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEec
Q 016547          319 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  358 (387)
Q Consensus       319 ~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~  358 (387)
                      +|...|++++|+|+  .++++++.|       |+++||.+
T Consensus       322 ~~~~~V~~v~~~~~--~~~~~~s~d-------g~~~l~~~  352 (355)
T d1nexb2         322 KDADQIWSVNFKGK--TLVAAVEKD-------GQSFLEIL  352 (355)
T ss_dssp             TTCSEEEEEEEETT--EEEEEEESS-------SCEEEEEE
T ss_pred             CCCCCEEEEEEcCC--eEEEEEECC-------CcEEEEEE
Confidence            78999999999985  466655544       98766644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-29  Score=212.10  Aligned_cols=286  Identities=18%  Similarity=0.274  Sum_probs=197.8

Q ss_pred             eeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           25 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        25 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+.+|.+.|.+++|+|   ++|++|+.|+.+++|+....            ........+.. .+.....  ....++.
T Consensus        51 ~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~--~~~~~~~  112 (342)
T d2ovrb2          51 RTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETG------------ECIHTLYGHTS-TVRCMHL--HEKRVVS  112 (342)
T ss_dssp             EECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEE--ETTEEEE
T ss_pred             EEEeCCCCCEEEEEeCC---Cccccceecccccccccccc------------cceecccccce-eEeeeec--ccccccc
Confidence            34568999999999987   38999999999999998877            33333343433 3433333  4566777


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      +..|+.+.+|+..++............................++.+.+++......+..+.+|...+..+.+  ++ ..
T Consensus       113 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~  189 (342)
T d2ovrb2         113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IH  189 (342)
T ss_dssp             EETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SE
T ss_pred             cccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CC-CE
Confidence            8889999999988764332221111110000000001111223455566666666677778888877776655  45 67


Q ss_pred             EEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec---c
Q 016547          185 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---G  261 (387)
Q Consensus       185 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~  261 (387)
                      +++++.||.|++||++..+  .+.....|...+.++++++   ++|++++.||.|++||+..      .+....+.   .
T Consensus       190 l~s~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~------~~~~~~~~~~~~  258 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKT------GQCLQTLQGPNK  258 (342)
T ss_dssp             EEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTT------CCEEEEECSTTS
T ss_pred             EEEEeCCCeEEEeecccce--eeeEecccccceeEEecCC---CEEEEEcCCCEEEEEeccc------ccccccccccce
Confidence            9999999999999999887  6777888999998888764   6999999999999999988      66666665   3


Q ss_pred             ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEec
Q 016547          262 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  341 (387)
Q Consensus       262 ~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s  341 (387)
                      |...+.++.++++   ++++++.||.|++||++++......          ......+|...|++++|+|++. ++++++
T Consensus       259 ~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~~~----------~~~~~~~~~~~v~~v~~s~~~~-~la~g~  324 (342)
T d2ovrb2         259 HQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIRNL----------VTLESGGSGGVVWRIRASNTKL-VCAVGS  324 (342)
T ss_dssp             CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEE----------EECTTGGGTCEEEEEEECSSEE-EEEEEC
T ss_pred             eeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEEEE----------ecccCCCCCCCEEEEEECCCCC-EEEEEe
Confidence            5667888887654   5679999999999999985322110          0111246788999999999875 445444


Q ss_pred             CCCCCCCCCceEEEEecC
Q 016547          342 DDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       342 ~d~~tg~~dg~i~iw~~~  359 (387)
                      .|   |+.+..|++||++
T Consensus       325 ~d---Gt~~~~l~~~Df~  339 (342)
T d2ovrb2         325 RN---GTEETKLLVLDFD  339 (342)
T ss_dssp             SS---SSSCCEEEEEECC
T ss_pred             CC---CCCeeEEEEEeCC
Confidence            43   4455579999998

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6e-30  Score=220.18  Aligned_cols=264  Identities=13%  Similarity=0.155  Sum_probs=178.2

Q ss_pred             eeeeecCCCcEEE------EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECC
Q 016547           24 KHKTIIHPGEVNR------IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP   97 (387)
Q Consensus        24 ~~~~~~h~~~v~~------i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~   97 (387)
                      ......|...+..      +.....+..++++++.||.|++|++................  .....+.. .+..++|.+
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~  129 (393)
T d1sq9a_          53 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL--LDSDMKKH-SFWALKWGA  129 (393)
T ss_dssp             EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC--SCTTGGGS-CEEEEEEEC
T ss_pred             eEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccce--eeeccCCC-ceEEEEEec
Confidence            3344456554433      33333345678899999999999988764332211100000  00112232 366788876


Q ss_pred             C-----CCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCe
Q 016547           98 T-----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  172 (387)
Q Consensus        98 ~-----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  172 (387)
                      +     +.++++++.||++++|++............     ......                 ...........+...+
T Consensus       130 ~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~-----------------~~~~~~~~~~~~~~~~  187 (393)
T d1sq9a_         130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL-----NWSPTL-----------------ELQGTVESPMTPSQFA  187 (393)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT-----CCCCEE-----------------EEEEEECCSSSSCCCC
T ss_pred             CCCcccccEEEEEcCCCcEEEEEeecCCcccceeee-----eeccce-----------------ecccceecccCCCCcE
Confidence            5     468899999999999998643221110000     000000                 0000111223455678


Q ss_pred             EEEEEccCCCeeEEEecCCCeEEEEEccCCCCce----eEEeeccCCCeeEEEecCCCCCeEEEeeCCC---eEEEEEec
Q 016547          173 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV----IKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRR  245 (387)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~~~d~~  245 (387)
                      .+++|+|++  +|++|+.||.|++||+++++...    ...+.+|..+|++++|+| ++++|++|+.|+   .|++||++
T Consensus       188 ~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         188 TSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccc
Confidence            999999987  78999999999999998876211    123456899999999999 999999999987   49999998


Q ss_pred             cCCCCCCCCceEEe-------------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCce
Q 016547          246 NLTSNGVGSPINKF-------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       246 ~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                      +      ++.+..+             .+|...|++++|+|++++ |++++.|++|+|||++++               +
T Consensus       265 ~------g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s~D~~v~vWd~~~g---------------~  322 (393)
T d1sq9a_         265 F------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTK---------------E  322 (393)
T ss_dssp             T------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTT---------------E
T ss_pred             c------ceeeeeeccccccccceeeeecccCceeeeccCCCCCe-eEEECCCCEEEEEECCCC---------------C
Confidence            7      6666555             479999999999999995 679999999999999986               4


Q ss_pred             eeeeeccCCCCee----EEEEccCCCeEE
Q 016547          313 LFFQHAGHRDKVV----DFHWNASDPWTV  337 (387)
Q Consensus       313 ~~~~~~~~~~~v~----~~~~~~~~~~l~  337 (387)
                      ++..+.+|.+.|.    .++|+|++..++
T Consensus       323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         323 RITTLNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             EEEEECCcCCcccCCccEEEECCCCCEEE
Confidence            5777889988775    478888887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-27  Score=199.47  Aligned_cols=280  Identities=12%  Similarity=0.033  Sum_probs=193.8

Q ss_pred             cceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           20 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        20 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      ...+.....+|.++|.+++|+|+++.+|++|+.||.|++|++...            ........+.........+.++.
T Consensus        45 ~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  112 (342)
T d1yfqa_          45 KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS------------PSFQALTNNEANLGICRICKYGD  112 (342)
T ss_dssp             TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS------------SSEEECBSCCCCSCEEEEEEETT
T ss_pred             cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc------------ccccccccccccccccccccccc
Confidence            344455667899999999999977889999999999999999887            44455555554445566777788


Q ss_pred             CEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC--CCCCeEEEEE
Q 016547          100 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTF  177 (387)
Q Consensus       100 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~  177 (387)
                      ..+++++.|+.+++||++.........                                    .....  .......+.+
T Consensus       113 ~~~~~~~~~~~~~~wd~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_         113 DKLIAASWDGLIEVIDPRNYGDGVIAV------------------------------------KNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             TEEEEEETTSEEEEECHHHHTTBCEEE------------------------------------EESCSSSSSSCCCEEEE
T ss_pred             ccccccccccccceeeccccccceeee------------------------------------cccccccccceeeeeee
Confidence            999999999999999987542211100                                    11111  1223345566


Q ss_pred             ccCCCeeEEEecCCCeEEEEEccCCCCce-eEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCce
Q 016547          178 CPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  256 (387)
Q Consensus       178 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  256 (387)
                      .+.+ ..+++++.|+.|++||++...... ......+...+.+..+.+.++..+++++.||.+.+|+.............
T Consensus       157 ~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         157 DTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             EECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             eccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            6666 679999999999999998766322 22333455566777776657889999999999999998753221111111


Q ss_pred             E---------EeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEE
Q 016547          257 N---------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  327 (387)
Q Consensus       257 ~---------~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  327 (387)
                      .         ....|...|++++|+|++++ ||+|+.||.|++||+++.               +.+..+..+ ..+..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~~~---------------~~l~~~~~~-~~~~~~  298 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR---------------KKIKNFAKF-NEDSVV  298 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCC-SSSEEE
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCccE-EEEECCCCEEEEEECCCC---------------cEEEEecCC-CCCEEE
Confidence            1         12346678999999999995 689999999999999975               234444332 345567


Q ss_pred             EEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEe
Q 016547          328 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  383 (387)
Q Consensus       328 ~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  383 (387)
                      +|+|+++.+++++++        +++++|....          ..+..|...|..+
T Consensus       299 ~~s~~~~~l~~a~sd--------d~~~~~~~~~----------~~~~~~~~~i~~~  336 (342)
T d1yfqa_         299 KIACSDNILCLATSD--------DTFKTNAAID----------QTIELNASSIYII  336 (342)
T ss_dssp             EEEECSSEEEEEEEC--------THHHHCSSSC----------TTSCCCCCEEEEE
T ss_pred             EEEeCCCEEEEEEcC--------CcEEEeeeeC----------CCccCCCCeEEEE
Confidence            888889888865554        4677775541          3455566666654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.5e-29  Score=206.01  Aligned_cols=254  Identities=13%  Similarity=0.148  Sum_probs=162.6

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      ++++++.+|.. .|++++|+|    |+||+.||+|++||+.+....-......... .....+..   ...+..+.+|+.
T Consensus         4 ~~i~~l~gH~~-~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~-~~~~~~~s---~s~D~~v~~w~~   74 (287)
T d1pgua2           4 EVLKTISGHNK-GITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSS---ISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEECCCSS-CEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEE---EETTTEEEETTE
T ss_pred             ceeEEECCCCC-ceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEe-cCCCeEEE---Eeeccccccccc
Confidence            67889999998 799999987    9999999999999987542110000000000 00000000   001111222211


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  236 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  236 (387)
                      ..       ......+.++.+.+++ ..++++ .++.+.+|+..+++  ....+. +...  ..++++ +++.+++++.+
T Consensus        75 ~~-------~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~~~--~~~~~~-~~~~~~v~~~~  139 (287)
T d1pgua2          75 TK-------HEFGSQPKVASANNDG-FTAVLT-NDDDLLILQSFTGD--IIKSVR-LNSP--GSAVSL-SQNYVAVGLEE  139 (287)
T ss_dssp             EE-------EECSSCEEEEEECSSS-EEEEEE-TTSEEEEEETTTCC--EEEEEE-CSSC--EEEEEE-CSSEEEEEETT
T ss_pred             cc-------cccccceeeeeeccCC-ceEEEe-ecccceeeecccee--eeeecc-ccce--eeeeec-cCcceeeeccc
Confidence            10       1123345666666665 444433 34456666666555  333332 2233  345666 67778777776


Q ss_pred             C-eEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          237 N-SVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       237 g-~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                      + .+++|++..      ......+. .|...+++++|+|++.+ |++|+.||.|++||+.....              ..
T Consensus       140 ~~~v~~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~~--------------~~  198 (287)
T d1pgua2         140 GNTIQVFKLSD------LEVSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKILLYDLQSREV--------------KT  198 (287)
T ss_dssp             TSCEEEEETTE------EEEEEECSSCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEE--------------EE
T ss_pred             cceeeeeeccc------cceeeeeeeccCCceeEEEeccCccc-cccccccccccceeeccccc--------------cc
Confidence            5 799999876      44444443 47788999999999996 57999999999999987422              12


Q ss_pred             eeeccCCCCeeEEEEccCCC---------eEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          315 FQHAGHRDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~---------~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      ..+.+|...|++++|+|.+.         .+++       +|+.|++|+|||+..     ..+.+..+.+|.+.|++++|
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~-------sgs~D~~i~iw~~~~-----~~~~~~~~~~h~~~V~~v~~  266 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-------TGSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLW  266 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCEEE-------EEETTSCEEEEESSC-----TTCCEEETTSSTTCEEEEEE
T ss_pred             ccccccccccceeeecccccccccccCCCCeeE-------eecCCCeEEEEECCC-----CCeEEEEeCCCCCCeEEEEE
Confidence            33568999999999998653         2334       666679999999973     35677788899999999999


Q ss_pred             cC
Q 016547          386 KP  387 (387)
Q Consensus       386 ~P  387 (387)
                      +|
T Consensus       267 ~~  268 (287)
T d1pgua2         267 ET  268 (287)
T ss_dssp             EE
T ss_pred             CC
Confidence            86

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.1e-28  Score=206.05  Aligned_cols=261  Identities=13%  Similarity=0.106  Sum_probs=188.7

Q ss_pred             eecCCCcEEEEEecCCCCcEEEEecCC--CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE
Q 016547           27 TIIHPGEVNRIRELPQNTKIVATHTDS--PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  104 (387)
Q Consensus        27 ~~~h~~~v~~i~~~~~~~~~l~t~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s  104 (387)
                      ..+|.+.|.+++|+| ++++|++++.+  ..|++||++++             ....+..|.. .|.+++|+|++++|++
T Consensus        38 ~~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~-------------~~~~~~~~~~-~v~~~~~spdg~~l~~  102 (360)
T d1k32a3          38 KVPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTG-------------KAEKFEENLG-NVFAMGVDRNGKFAVV  102 (360)
T ss_dssp             ECSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTC-------------CEEECCCCCC-SEEEEEECTTSSEEEE
T ss_pred             EccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCC-------------cEEEeeCCCc-eEEeeeecccccccce
Confidence            358999999999999 88888766544  37999999887             3445667776 6899999999999999


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCee
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  184 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (387)
                      ++.++.+++|++.+..                                        ....+..|...+.+++|+|++ ++
T Consensus       103 ~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~spdg-~~  141 (360)
T d1k32a3         103 ANDRFEIMTVDLETGK----------------------------------------PTVIERSREAMITDFTISDNS-RF  141 (360)
T ss_dssp             EETTSEEEEEETTTCC----------------------------------------EEEEEECSSSCCCCEEECTTS-CE
T ss_pred             eccccccccccccccc----------------------------------------eeeeeecccccccchhhccce-ee
Confidence            9999999999997543                                        235566788889999999999 56


Q ss_pred             EEE----------ecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCC---
Q 016547          185 FCS----------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---  251 (387)
Q Consensus       185 l~~----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---  251 (387)
                      |+.          +..++.+++||+.+++   ......+...+..++|+| +++.|++++.++.+.+||........   
T Consensus       142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~  217 (360)
T d1k32a3         142 IAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVV  217 (360)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             eeeeccccccceeeccccceeeeccccCc---eeeecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccc
Confidence            664          3445679999998776   344556778889999999 99999999999999999864321000   


Q ss_pred             ----------------------------------CCCceE----------EeccccceEEEEEEcCCCCe--eEEEecCC
Q 016547          252 ----------------------------------VGSPIN----------KFEGHSAAVLCVQWSPDKSS--VFGSSAED  285 (387)
Q Consensus       252 ----------------------------------~~~~~~----------~~~~~~~~i~~~~~~~~~~~--ll~s~~~d  285 (387)
                                                        ....+.          .+..+...+..+.+.+.+..  ++++++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (360)
T d1k32a3         218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK  297 (360)
T ss_dssp             BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred             cceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCC
Confidence                                              000011          11112222333333333321  24567788


Q ss_pred             CeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccc
Q 016547          286 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  365 (387)
Q Consensus       286 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~  365 (387)
                      +.|++||+....                .   ..|.+.|.+++|+|||++|+        +++.||.|++||+.      
T Consensus       298 ~~i~~~d~~~~~----------------~---~~~~~~v~~~~~SpDG~~l~--------~~~~Dg~i~v~d~~------  344 (360)
T d1k32a3         298 GVLLKYDVKTRK----------------V---TEVKNNLTDLRLSADRKTVM--------VRKDDGKIYTFPLE------  344 (360)
T ss_dssp             EEEEEEETTTCC----------------E---EEEEEEEEEEEECTTSCEEE--------EEETTSCEEEEESS------
T ss_pred             CEEEEEECCCCe----------------E---EEecCCcCEEEECCCCCEEE--------EEECCCeEEEEECC------
Confidence            999999988741                1   23445689999999999987        66677999999999      


Q ss_pred             cchhhhhhhccCceE
Q 016547          366 QDEVLAELEKFKAHV  380 (387)
Q Consensus       366 ~~~~~~~~~~~~~~v  380 (387)
                      .++...++..+..++
T Consensus       345 ~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         345 KPEDERTVETDKRPL  359 (360)
T ss_dssp             CTTSCEECCCCSSCE
T ss_pred             CCCcceEEEeccccc
Confidence            666666665555543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.4e-27  Score=191.97  Aligned_cols=228  Identities=19%  Similarity=0.362  Sum_probs=170.0

Q ss_pred             CCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCC
Q 016547           77 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  156 (387)
Q Consensus        77 ~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (387)
                      +.+.....|.. .|+|++|  ++++|+||+.||+|++||++++                                     
T Consensus         6 ~~i~~~~~~~~-~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~-------------------------------------   45 (293)
T d1p22a2           6 QRIHCRSETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-------------------------------------   45 (293)
T ss_dssp             CCEECCCSSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSC-------------------------------------
T ss_pred             EEEeccCCCCC-CEEEEEE--cCCEEEEEeCCCeEEEEECCCC-------------------------------------
Confidence            34455566666 5888665  7999999999999999999754                                     


Q ss_pred             CCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCc-------------------------------
Q 016547          157 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-------------------------------  205 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------  205 (387)
                         +++..+.+|...|++++|.  + ++|++|+.|+.|++|++..+...                               
T Consensus        46 ---~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (293)
T d1p22a2          46 ---ECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV  119 (293)
T ss_dssp             ---CEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred             ---cEEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeE
Confidence               3446778899999998874  4 68999999999999998765310                               


Q ss_pred             ----------eeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC
Q 016547          206 ----------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  275 (387)
Q Consensus       206 ----------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  275 (387)
                                .......|...+..+.+   ....+++++.|+.|++||.++      .+.+..+.++...+..+.+++. 
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~s~d~~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~-  189 (293)
T d1p22a2         120 WDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTST------CEFVRTLNGHKRGIACLQYRDR-  189 (293)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEETT-
T ss_pred             eecccccccccccccccccccccccee---cccccccccCCCceeeecCCC------CcEEEEEcccccccccccCCCC-
Confidence                      01112334455555554   346788999999999999998      8889999999999988888653 


Q ss_pred             CeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEE
Q 016547          276 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  355 (387)
Q Consensus       276 ~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~i  355 (387)
                        .+++++.||.|++||++..               ..+....+|...+..+  ++++.+++        +|+.||.|++
T Consensus       190 --~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~v~~~--~~~~~~l~--------sg~~dg~i~i  242 (293)
T d1p22a2         190 --LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCI--RFDNKRIV--------SGAYDGKIKV  242 (293)
T ss_dssp             --EEEEEETTSCEEEEETTTC---------------CEEEEECCCSSCEEEE--ECCSSEEE--------EEETTSCEEE
T ss_pred             --eEEEecCCCEEEEEecccc---------------eeeeeecccceeeeec--cccceEEE--------EEcCCCEEEE
Confidence              4679999999999999875               3355567787777654  45566666        6667799999


Q ss_pred             EecCCCc---ccccchhhhhhhccCceEEEeeecC
Q 016547          356 WRMSDLI---YRPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       356 w~~~~~~---~~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                      ||+....   ......++..+.+|.+.|++++|+|
T Consensus       243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             EECCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence            9986321   1123345677889999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=6.8e-27  Score=198.43  Aligned_cols=192  Identities=10%  Similarity=0.030  Sum_probs=155.6

Q ss_pred             EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCC--eEEE
Q 016547           36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVL  113 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~--~i~v  113 (387)
                      .-.|+|.+|+++|+++ +|.|++||++++            .... + +|.. .|.+++|+|||++|++++.+.  .|++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~------------~~~~-~-~~~~-~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT------------YVLK-V-PEPL-RIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS------------BEEE-C-SCCS-CEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC------------cEEE-c-cCCC-CEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            4568987899999986 479999999877            3322 2 5766 689999999999998776553  7999


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      ||++++.                                         ...+..|...|.+++|+|++ +++++++.++.
T Consensus        71 ~d~~~~~-----------------------------------------~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~  108 (360)
T d1k32a3          71 YDYRTGK-----------------------------------------AEKFEENLGNVFAMGVDRNG-KFAVVANDRFE  108 (360)
T ss_dssp             EETTTCC-----------------------------------------EEECCCCCCSEEEEEECTTS-SEEEEEETTSE
T ss_pred             EECCCCc-----------------------------------------EEEeeCCCceEEeeeecccc-cccceeccccc
Confidence            9997642                                         24566789999999999999 88999999999


Q ss_pred             EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEee----------CCCeEEEEEeccCCCCCCCCceEEecccc
Q 016547          194 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS----------ADNSVRMFDRRNLTSNGVGSPINKFEGHS  263 (387)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  263 (387)
                      +++|++.+++  .......|...+.+++|+| ++++|+.+.          .++.+++||+.+      ++ ...+..+.
T Consensus       109 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~------~~-~~~~~~~~  178 (360)
T d1k32a3         109 IMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RK-IFAATTEN  178 (360)
T ss_dssp             EEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TE-EEECSCSS
T ss_pred             cccccccccc--eeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeecccc------Cc-eeeecccc
Confidence            9999999887  5667778888999999999 999998654          345799999986      43 34455577


Q ss_pred             ceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          264 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       264 ~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ..+..++|+|+|++ |++++.++.+++||....
T Consensus       179 ~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         179 SHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             SBEEEEEECTTSCE-EEEEESCCCCCEECSSSS
T ss_pred             cccccccccCCCCE-EEEEeCCCceEccccccc
Confidence            78899999999996 568888999999997653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.8e-26  Score=200.27  Aligned_cols=327  Identities=10%  Similarity=0.027  Sum_probs=199.8

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEE-
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS-  104 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s-  104 (387)
                      ..+.+...+..++|+| +|++|++++.||+|++||+.+++....       ..+....+|.. .+.+++|+|||+++++ 
T Consensus        56 ~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~-------~~i~~~~~~~~-~~~s~~~spDG~~l~v~  126 (426)
T d1hzua2          56 KVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV-------AEIKIGIEARS-VESSKFKGYEDRYTIAG  126 (426)
T ss_dssp             EEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE-------EEEECCSEEEE-EEECCSTTCTTTEEEEE
T ss_pred             EEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEE-------EEEeCCCCCcc-eEEeeeecCCCCEEEEe
Confidence            3344446799999999 999999999999999999998831110       01111234544 4667888999998754 


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcc------cCCCCCCceeccCCC--------CCCCCCCCCCCCCCC-CceeecCCC
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATA------KSAGSSGSIIKQSPK--------PGDGNDKAADGPSVG-PRGIYNGHE  169 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~  169 (387)
                      +..++.+++||..+............      ...............        .....+......... .......+.
T Consensus       127 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  206 (426)
T d1hzua2         127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  206 (426)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC
T ss_pred             ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC
Confidence            45789999999987644322211100      001111111111100        001111111111111 122334567


Q ss_pred             CCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE--EEeeCCCeEEEEEeccC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFDRRNL  247 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l--~~~~~dg~i~~~d~~~~  247 (387)
                      ..+..+.++|++..++++...+..+.+++..+++.........+........+.......+  +..+.|+.+.+|+....
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence            7889999999996666677788889999998877322222222333333444433122222  23445788888887653


Q ss_pred             CC-CCCCCceEEeccccceEEEEEEcCCCCeeEE------EecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          248 TS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFG------SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       248 ~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~------s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      .. ...++....+.+|...+..++|+|+++++++      +++.|++|+|||+.+.....+..+.      .....+..|
T Consensus       287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~------~~~~~~~~~  360 (426)
T d1hzua2         287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI------AEWADLGEG  360 (426)
T ss_dssp             TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH------HHHHCCCSS
T ss_pred             ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc------chhcccCCC
Confidence            21 1114677889999999999999999998654      3556889999999886433211000      001123456


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      ...|..++|+|||+++++++..   +++.||.|+|||..      +.+....+.++
T Consensus       361 ~~rv~~~~fSpDGk~i~vs~~~---~~~~~~~i~v~D~~------T~k~~~~i~~~  407 (426)
T d1hzua2         361 AKRVVQPEYNKRGDEVWFSVWN---GKNDSSALVVVDDK------TLKLKAVVKDP  407 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEECC---CTTSCCEEEEEETT------TTEEEEEECCT
T ss_pred             CccEEEEEECCCCCEEEEEEec---CCCCCCeEEEEECC------CCeEEEEECCC
Confidence            6679999999999999887643   35678999999999      56665555544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=3e-26  Score=198.84  Aligned_cols=285  Identities=8%  Similarity=0.036  Sum_probs=191.0

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  124 (387)
                      .++++.+.||+|+|||+.++            +.+..+..|..  +..++|+|||++|++++.|++|++||+.++.....
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~------------~~~~~l~~g~~--~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC------------SEEEEEECCSS--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC------------cEEEEEeCCCC--eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence            35678889999999999999            78888888754  78999999999999999999999999987543211


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                      ..                                   +....+|...+.+++|+|||..+++++..++.+.+||..+.. 
T Consensus        99 ~~-----------------------------------i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-  142 (426)
T d1hzua2          99 AE-----------------------------------IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-  142 (426)
T ss_dssp             EE-----------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-
T ss_pred             EE-----------------------------------EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-
Confidence            10                                   122235566677888999995556677789999999999887 


Q ss_pred             ceeEEeeccCCCee-----------EEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEc
Q 016547          205 PVIKVEKAHDADLH-----------CVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS  272 (387)
Q Consensus       205 ~~~~~~~~~~~~i~-----------~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  272 (387)
                       .......|...+.           .+..++ ++..++.... .+.+.+++....     .........+...+..++|+
T Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         143 -PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDI-----DNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             -EEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSS-----SSCEEEEEECCSSEEEEEEC
T ss_pred             -eeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccc-----cceeeEEeccCCccEeeeEC
Confidence             4444444444433           444444 4443333332 344444444431     12223334567788999999


Q ss_pred             CCCCeeEEEecCCCeEEEEeCCCCCceeccCCC---------------------------------------CCCCCcee
Q 016547          273 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR---------------------------------------TTNYPAGL  313 (387)
Q Consensus       273 ~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~---------------------------------------~~~~~~~~  313 (387)
                      |++++++++...+..+.+++.............                                       ......+.
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~  295 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  295 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence            999998888888888999998864432111100                                       00112245


Q ss_pred             eeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhh---hhhccCceEEEeeecC
Q 016547          314 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA---ELEKFKAHVISCTSKP  387 (387)
Q Consensus       314 ~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~v~~~~f~P  387 (387)
                      ...+.+|...+..++|+|++.+++++..... +++.|++|+|||+.+.....+-.++.   .+..|...|..++|||
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~-s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNP-DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTCSEEEECCTTCS-SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             eEEEecCCCceeEEEcCCCCceEEEeecCCC-CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence            6678889999999999999999987543211 35567899999998432111111112   2334566799999998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=8.5e-23  Score=168.45  Aligned_cols=255  Identities=13%  Similarity=0.127  Sum_probs=189.5

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEE-EEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ..+.+...+.+..++|+| ++++| ++++.++.|++||+.++            +.+..+..+..  +..+.|++++.++
T Consensus        24 ~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~------------~~~~~~~~~~~--~~~~~~~~~~~~~   88 (301)
T d1l0qa2          24 VTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGSS--PQGVAVSPDGKQV   88 (301)
T ss_dssp             EEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEE
T ss_pred             EEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCC------------ceeeeeecccc--ccccccccccccc
Confidence            344556667789999999 66655 67788999999999998            66777777765  5799999999865


Q ss_pred             E-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          103 L-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       103 ~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      + ++..++.+.+|+..++...                                        ..+. +.....++.++|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~dg  127 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTVA----------------------------------------GTVK-TGKSPLGLALSPDG  127 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE----------------------------------------EEEE-CSSSEEEEEECTTS
T ss_pred             cccccccceeeecccccceee----------------------------------------eecc-ccccceEEEeecCC
Confidence            5 5667889999998764321                                        2222 34567889999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEEec
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE  260 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~  260 (387)
                      ..+++++..++.+.+|+..+..  ..... .+...+..+.++| ++..+++++.+ +.+.+|+...      ......+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  197 (301)
T d1l0qa2         128 KKLYVTNNGDKTVSVINTVTKA--VINTV-SVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVK  197 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTE--EEEEE-ECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEE
T ss_pred             Ceeeeeeccccceeeeeccccc--eeeec-ccCCCceEEEeec-cccceeeecccccccccccccc------eeeeeccc
Confidence            7777888889999999998876  34444 3456688999999 77777777665 5666777665      44545544


Q ss_pred             cccceEEEEEEcCCCCeeEEEe--cCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEE
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                       ....+..++|++++..+++++  ..++.|++||+.+.               +....+. +...+.+++|+|+|+++++
T Consensus       198 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---------------~~~~~~~-~~~~~~~va~spdg~~l~v  260 (301)
T d1l0qa2         198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIP-VGPDPAGIAVTPDGKKVYV  260 (301)
T ss_dssp             -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEE-CCSSEEEEEECTTSSEEEE
T ss_pred             -ccCCcceeeccccccccccccccceeeeeeeeecCCC---------------eEEEEEc-CCCCEEEEEEeCCCCEEEE
Confidence             446678899999999876554  34578999999875               2233333 3356899999999999887


Q ss_pred             EecCCCCCCCCCceEEEEecCCCcccccchhhhhhh
Q 016547          339 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  374 (387)
Q Consensus       339 s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~  374 (387)
                      +++.       |++|++||+.      +++++.++.
T Consensus       261 a~~~-------~~~i~v~D~~------t~~~~~~~~  283 (301)
T d1l0qa2         261 ALSF-------CNTVSVIDTA------TNTITATMA  283 (301)
T ss_dssp             EETT-------TTEEEEEETT------TTEEEEEEE
T ss_pred             EECC-------CCeEEEEECC------CCeEEEEEe
Confidence            5554       4999999999      677777665

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=6e-24  Score=183.88  Aligned_cols=193  Identities=8%  Similarity=0.005  Sum_probs=146.9

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  124 (387)
                      -++++.+.||+|.|||.+++            +.+..+..+.  .+..++|+|||+++++++.|++|++||+.+......
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~------------~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~   98 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV   98 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred             EEEEEEcCCCEEEEEECCCC------------cEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE
Confidence            34689999999999999999            7888888775  478999999999999999999999999976432111


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                      .                                   .+.....|.+.+.+..|+|||..++++++.++.|++||..+++ 
T Consensus        99 ~-----------------------------------~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-  142 (432)
T d1qksa2          99 A-----------------------------------EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-  142 (432)
T ss_dssp             E-----------------------------------EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-
T ss_pred             E-----------------------------------EEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-
Confidence            0                                   1122234556667778889995566889999999999999887 


Q ss_pred             ceeEEeec-----------cCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceE--EeccccceEEEEE
Q 016547          205 PVIKVEKA-----------HDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPIN--KFEGHSAAVLCVQ  270 (387)
Q Consensus       205 ~~~~~~~~-----------~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~i~~~~  270 (387)
                       ....+..           +......+.++| ++..+ ++...++.|.+||..+      .+...  .+. +...+..++
T Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~------~~~~~~~~i~-~g~~~~~~~  213 (432)
T d1qksa2         143 -PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTD------LNNLKTTEIS-AERFLHDGG  213 (432)
T ss_dssp             -EEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTC------SSEEEEEEEE-CCSSEEEEE
T ss_pred             -ceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccC------CCcceEEEEc-ccCccccce
Confidence             3333322           345566788899 66654 5666789999999887      44333  333 456788999


Q ss_pred             EcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          271 WSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       271 ~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      |+|+|+++++++..++.+.++|....
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ECCCCCEEEEeccccceEEEeecccc
Confidence            99999998888888889999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=4.5e-22  Score=164.04  Aligned_cols=248  Identities=12%  Similarity=0.139  Sum_probs=187.2

Q ss_pred             EEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCccc
Q 016547           46 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSA  124 (387)
Q Consensus        46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~  124 (387)
                      ..++++.|++|.+||++++            +.+..+.....  ...++|+|||++| ++++.++.|++||+.++..   
T Consensus         4 ~yV~~~~~~~v~v~D~~t~------------~~~~~i~~g~~--p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~---   66 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---   66 (301)
T ss_dssp             EEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---
T ss_pred             EEEEECCCCEEEEEECCCC------------eEEEEEECCCC--ceEEEEeCCCCEEEEEECCCCEEEEEECCCCce---
Confidence            3457788999999999998            56666665443  5799999999987 5677899999999986532   


Q ss_pred             cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCC
Q 016547          125 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  204 (387)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  204 (387)
                                                           +..+..+. .+..+.|++++...++++..++.+.+|+..+++ 
T Consensus        67 -------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  107 (301)
T d1l0qa2          67 -------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-  107 (301)
T ss_dssp             -------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-
T ss_pred             -------------------------------------eeeeeccc-cccccccccccccccccccccceeeecccccce-
Confidence                                                 23344443 468899999997777888899999999998876 


Q ss_pred             ceeEEeeccCCCeeEEEecCCCCCeEE-EeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEec
Q 016547          205 PVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  283 (387)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~  283 (387)
                       ....+ .+...+.++.++| ++..++ ++..++.+.+|+..+      ...+..+..+ ..+..++++|++..++++..
T Consensus       108 -~~~~~-~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         108 -VAGTV-KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             -EEEEE-ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEEET
T ss_pred             -eeeec-cccccceEEEeec-CCCeeeeeeccccceeeeeccc------cceeeecccC-CCceEEEeeccccceeeecc
Confidence             34444 3456778999999 776664 555688899999998      7777777644 45788999999998877777


Q ss_pred             CCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcc
Q 016547          284 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  363 (387)
Q Consensus       284 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~  363 (387)
                      .++.+.+|+.....               .... ......+..++|++++..+++++.     +..++.|++||+.    
T Consensus       178 ~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~g~~~~v~~~-----~~~~~~v~v~D~~----  232 (301)
T d1l0qa2         178 DSMSISVIDTVTNS---------------VIDT-VKVEAAPSGIAVNPEGTKAYVTNV-----DKYFNTVSMIDTG----  232 (301)
T ss_dssp             TTTEEEEEETTTTE---------------EEEE-EECSSEEEEEEECTTSSEEEEEEE-----CSSCCEEEEEETT----
T ss_pred             ccccccccccccee---------------eeec-ccccCCcceeeccccccccccccc-----cceeeeeeeeecC----
Confidence            77888888877641               2222 233456788999999999887653     3456899999999    


Q ss_pred             cccchhhhhhhccCceEEEeeecC
Q 016547          364 RPQDEVLAELEKFKAHVISCTSKP  387 (387)
Q Consensus       364 ~~~~~~~~~~~~~~~~v~~~~f~P  387 (387)
                        +++.+..+.. ...+.+++|+|
T Consensus       233 --t~~~~~~~~~-~~~~~~va~sp  253 (301)
T d1l0qa2         233 --TNKITARIPV-GPDPAGIAVTP  253 (301)
T ss_dssp             --TTEEEEEEEC-CSSEEEEEECT
T ss_pred             --CCeEEEEEcC-CCCEEEEEEeC
Confidence              6777777664 35678999987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5e-24  Score=184.37  Aligned_cols=294  Identities=10%  Similarity=-0.034  Sum_probs=182.3

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCC
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDK  109 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~  109 (387)
                      ...+..++|+| +++++++++.||+|++||+.+.+....       ..+....+|.+ .+.+..|+|||++| ++++.++
T Consensus        61 g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~-------~~i~~~~~~~~-~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          61 GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTV-------AEIKIGSEARS-IETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEE-------EEEECCSEEEE-EEECCSTTCTTTEEEEEEEETT
T ss_pred             CCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEE-------EEEecCCCCCC-eEEecccCCCCCEEEEEcCCCC
Confidence            35699999999 999999999999999999988731110       01111234443 56677888999986 6788899


Q ss_pred             eEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec
Q 016547          110 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  189 (387)
Q Consensus       110 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  189 (387)
                      +|++||..++...........                             ........+......+.++|++..++++..
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGM-----------------------------TYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEE-----------------------------CTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             eEEEEeCccccceeeeccCCc-----------------------------cccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            999999987644322111000                             000011124556778899999977778888


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCC-----------C------
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSN-----------G------  251 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~-----------~------  251 (387)
                      .++.|.+||..+.+...+..+ .+...+..++++| +++++++++. ++.+.++|..+....           .      
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~  260 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  260 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             cCCeEEEEEccCCCcceEEEE-cccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccce
Confidence            999999999987763222222 4566789999999 8887777765 457888887652100           0      


Q ss_pred             -------------CCC-ceEEe-------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceecc------CC
Q 016547          252 -------------VGS-PINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ------GP  304 (387)
Q Consensus       252 -------------~~~-~~~~~-------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~------~~  304 (387)
                                   .+. .+...       ..|...+....++|++..+ ++++.+...++|+..........      ..
T Consensus       261 ~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpD  339 (432)
T d1qksa2         261 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL-FIKTHPNSQYLYVDATLNPEAEISGSVAVFD  339 (432)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-CEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             ecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeE-EEEecCCccceeecccCCCCCCeeeEEEEEe
Confidence                         000 00000       1123346667777777653 46777777778865432111000      00


Q ss_pred             C------CCCCCceee-----eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          305 R------TTNYPAGLF-----FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       305 ~------~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                      .      ......++.     ..+..|...|..++|+|||++++++.-.   .+..+|.|+|||..      +.++..++
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~---~~~~~g~i~i~D~~------T~k~~~~i  410 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN---GKDQESALVVVDDK------TLELKHVI  410 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC---CTTSCCEEEEEETT------TTEEEEEE
T ss_pred             chhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEec---CCCCCCcEEEEECC------CceEEeEe
Confidence            0      000000000     1223567789999999999999877542   34467999999999      55554444


Q ss_pred             h
Q 016547          374 E  374 (387)
Q Consensus       374 ~  374 (387)
                      .
T Consensus       411 ~  411 (432)
T d1qksa2         411 K  411 (432)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=4.6e-23  Score=172.85  Aligned_cols=244  Identities=13%  Similarity=0.125  Sum_probs=166.8

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC-CCceEEEEECCCCCEE-EEecCCCeEEEEEcCCCcCc
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  122 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~  122 (387)
                      +++++++.|++|+|||+++.            +.+..+..+. ...+.+++|+|||+++ ++++.++.|.+||+.+++..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEEcCCCEEEEEECCCC------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            68999999999999999998            6666666543 2346799999999987 56778999999999876443


Q ss_pred             cccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec------------C
Q 016547          123 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG------------D  190 (387)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------~  190 (387)
                      .....                                   .....+...+..++|+|++ ..++++.            .
T Consensus        70 ~~~~~-----------------------------------~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          70 GRIDL-----------------------------------STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             EEEEC-----------------------------------CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEEC
T ss_pred             EEEec-----------------------------------CCCcccccceeeEEEcCCC-cEEEEeecCCcceeeecccc
Confidence            22111                                   0001112334578999998 5555554            4


Q ss_pred             CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC---------------C----
Q 016547          191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---------------G----  251 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---------------~----  251 (387)
                      ++.+.+||..+.+  ....+. +...+..++++| ++.++++++.+  +.+||..+....               .    
T Consensus       114 ~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         114 PTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             CCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             ccceeeccccCCe--EEEecc-ccCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcce
Confidence            6788999998877  444443 456788999999 99999988755  566776542100               0    


Q ss_pred             -------C---------------------------------CC-ceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEE
Q 016547          252 -------V---------------------------------GS-PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI  290 (387)
Q Consensus       252 -------~---------------------------------~~-~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~v  290 (387)
                             .                                 +. ....+..+...+..++++|++.++ +++  ++.|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~i~v  264 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGA--YNVLES  264 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE-EEE--ESEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEE-EEc--cccEEE
Confidence                   0                                 00 001112234456677788888753 333  689999


Q ss_pred             EeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhh
Q 016547          291 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL  370 (387)
Q Consensus       291 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~  370 (387)
                      ||+.+.               +.+... .+...+.+++|+|+|++++        +++.||+|+|||..      +.+.+
T Consensus       265 ~d~~~~---------------~~~~~~-~~~~~~~~~~~s~dG~~l~--------v~~~~~~i~v~D~~------t~~~v  314 (337)
T d1pbyb_         265 FDLEKN---------------ASIKRV-PLPHSYYSVNVSTDGSTVW--------LGGALGDLAAYDAE------TLEKK  314 (337)
T ss_dssp             EETTTT---------------EEEEEE-ECSSCCCEEEECTTSCEEE--------EESBSSEEEEEETT------TCCEE
T ss_pred             EECCCC---------------cEEEEE-cCCCCEEEEEECCCCCEEE--------EEeCCCcEEEEECC------CCcEE
Confidence            999985               223332 3556789999999999988        56677999999999      67777


Q ss_pred             hhhhc
Q 016547          371 AELEK  375 (387)
Q Consensus       371 ~~~~~  375 (387)
                      .++..
T Consensus       315 ~~i~~  319 (337)
T d1pbyb_         315 GQVDL  319 (337)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            66653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=4.1e-22  Score=167.62  Aligned_cols=258  Identities=9%  Similarity=0.031  Sum_probs=160.8

Q ss_pred             EEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE-EEecCCCeEEEEE
Q 016547           37 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWS  115 (387)
Q Consensus        37 i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd  115 (387)
                      ++|++ ++++|++++.|++|.+||++++            +.+..+..+....+.+++|+|||+++ +++..++.|.+||
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d   68 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   68 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCC------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence            35777 8999999999999999999998            67777765433346799999999987 5666899999999


Q ss_pred             cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec------
Q 016547          116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG------  189 (387)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------  189 (387)
                      +.++.........                                  .....+...+..++|+|+| .++++++      
T Consensus        69 ~~t~~~~~~~~~~----------------------------------~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~  113 (346)
T d1jmxb_          69 LDTCKNTFHANLS----------------------------------SVPGEVGRSMYSFAISPDG-KEVYATVNPTQRL  113 (346)
T ss_dssp             TTTTEEEEEEESC----------------------------------CSTTEEEECSSCEEECTTS-SEEEEEEEEEEEC
T ss_pred             CccCeeeeeeccc----------------------------------ccccccCCceEEEEEecCC-CEEEEEecCCcce
Confidence            9876443221110                                  0000111234567888888 4444433      


Q ss_pred             ------CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC-------------
Q 016547          190 ------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-------------  250 (387)
Q Consensus       190 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------  250 (387)
                            .++.+.+||..+++.............+..+.+++ ++.+++.+   +.+.+|+..+....             
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGY  189 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEeC---CcceEEEccCCCEEEEEecCCCccceE
Confidence                  46778888877655211111112223344444444 44433322   22444443321000             


Q ss_pred             --C----------------------------------------------CCCc-eEEeccccceEEEEEEcCCCCeeEEE
Q 016547          251 --G----------------------------------------------VGSP-INKFEGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       251 --~----------------------------------------------~~~~-~~~~~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                        +                                              .+.. ......+...+..+.+++++.+++ .
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  268 (346)
T d1jmxb_         190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-Y  268 (346)
T ss_dssp             CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-E
T ss_pred             EeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-E
Confidence              0                                              0111 122234555677888888888654 4


Q ss_pred             ecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCC
Q 016547          282 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  361 (387)
Q Consensus       282 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~  361 (387)
                      .. ++.|.+||....               +.+..+ .+...+.+++|+|||++++        +++.||.|++||+.  
T Consensus       269 ~~-~~~v~v~d~~~~---------------~~~~~~-~~~~~~~~va~s~DG~~l~--------v~~~d~~v~v~D~~--  321 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQR---------------KLIKAA-NLDHTYYCVAFDKKGDKLY--------LGGTFNDLAVFNPD--  321 (346)
T ss_dssp             EE-ESEEEEEETTTT---------------EEEEEE-ECSSCCCEEEECSSSSCEE--------EESBSSEEEEEETT--
T ss_pred             ec-CCeEEEEECCCC---------------cEEEEE-cCCCCEEEEEEcCCCCEEE--------EEeCCCcEEEEECc--
Confidence            43 567999999874               223333 2445789999999999988        66677999999999  


Q ss_pred             cccccchhhhhhhccCc
Q 016547          362 IYRPQDEVLAELEKFKA  378 (387)
Q Consensus       362 ~~~~~~~~~~~~~~~~~  378 (387)
                          +++.+.++....+
T Consensus       322 ----t~~~i~~i~~p~g  334 (346)
T d1jmxb_         322 ----TLEKVKNIKLPGG  334 (346)
T ss_dssp             ----TTEEEEEEECSSS
T ss_pred             ----cCCEEEEEECCCC
Confidence                7888887775443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.3e-19  Score=151.29  Aligned_cols=266  Identities=10%  Similarity=0.166  Sum_probs=179.3

Q ss_pred             ceeeeeeecCCCcEEEEEecCCCCcEE-EEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc--CCCceEEEEECC
Q 016547           21 FVKKHKTIIHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCP   97 (387)
Q Consensus        21 ~~~~~~~~~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~~v~~~~~~~   97 (387)
                      .++..+.+.|.+.|..|+|+| ++++| +++..|+.|++|++....            ....+..+  ....+..++|+|
T Consensus        26 ~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~------------~~~~~~~~~~~~~~p~~l~~sp   92 (333)
T d1ri6a_          26 ALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDD------------GALTFAAESALPGSLTHISTDH   92 (333)
T ss_dssp             CEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTT------------CCEEEEEEEECSSCCSEEEECT
T ss_pred             CeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCC------------CcEEEeeecccCCCceEEEEcC
Confidence            355667788999999999999 77777 555668999999998762            22222111  112356899999


Q ss_pred             CCCEEEEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547           98 TEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus        98 ~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      ||++|++++. ++.|.+|+.......                                      .......+...+.++.
T Consensus        93 Dg~~l~v~~~~~~~v~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~v~  134 (333)
T d1ri6a_          93 QGQFVFVGSYNAGNVSVTRLEDGLPV--------------------------------------GVVDVVEGLDGCHSAN  134 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTEEE--------------------------------------EEEEEECCCTTBCCCE
T ss_pred             CCCEEeecccCCCceeeeccccccce--------------------------------------ecccccCCCccceEEE
Confidence            9999988874 678999988653211                                      1122334566788899


Q ss_pred             EccCCCeeEEEecCCCeEEEEEccCCCCceeE----EeeccCCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCC
Q 016547          177 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIK----VEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNG  251 (387)
Q Consensus       177 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~  251 (387)
                      ++|++...+.....+..|.+|+..........    ...........++|++ ++..++... ..+...+++....... 
T Consensus       135 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-  212 (333)
T d1ri6a_         135 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGN-  212 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSC-
T ss_pred             eeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccc-
Confidence            99999555555556778999998775532111    1223445678899999 777666554 5667888876542110 


Q ss_pred             CCCceEEec------cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCee
Q 016547          252 VGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  325 (387)
Q Consensus       252 ~~~~~~~~~------~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  325 (387)
                       ........      ........++++++++++++++..++.+.+|++.......            ...........+.
T Consensus       213 -~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~p~  279 (333)
T d1ri6a_         213 -IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL------------SKEGFQPTETQPR  279 (333)
T ss_dssp             -CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE------------EEEEEEECSSSCC
T ss_pred             -eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE------------EEEEEeCCCCCee
Confidence             11111111      1234567889999999988888889999999997643321            1222333455678


Q ss_pred             EEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          326 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       326 ~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .++|+|||++|+++++       .++.|++|+++
T Consensus       280 ~~a~spDGk~l~va~~-------~~~~v~v~~id  306 (333)
T d1ri6a_         280 GFNVDHSGKYLIAAGQ-------KSHHISVYEIV  306 (333)
T ss_dssp             CEEECTTSSEEEEECT-------TTCEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEC-------CCCeEEEEEEE
Confidence            9999999999887544       44999999776

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=2.8e-19  Score=151.91  Aligned_cols=303  Identities=7%  Similarity=-0.069  Sum_probs=187.7

Q ss_pred             ecCCCcEEEEEecCCCCcEEEEe-----cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           28 IIHPGEVNRIRELPQNTKIVATH-----TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~l~t~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      ..+.+++..++++| +++.++..     +.++.|.+||.+++            +.+..+..+..   ..++|+|||++|
T Consensus        17 ~~~~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg------------~~~~~~~~~~~---~~~a~SpDG~~l   80 (373)
T d2madh_          17 GAADGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSG------------SILGHVNGGFL---PNPVAAHSGSEF   80 (373)
T ss_pred             ccCCCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCC------------CEEEEEeCCCC---ccEEEcCCCCEE
Confidence            35889999999999 66665543     23467999999988            66667776654   379999999999


Q ss_pred             EEec----------CCCeEEEEEcCCCcCccccCCCccc--CCCCC-CceeccCCC--------CCCCCCCCCCCCCCCC
Q 016547          103 LSGG----------KDKSVVLWSIQDHITSSATDPATAK--SAGSS-GSIIKQSPK--------PGDGNDKAADGPSVGP  161 (387)
Q Consensus       103 ~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~  161 (387)
                      ++++          .++.|.+||..+++...........  ..... ..+......        .......+++....+ 
T Consensus        81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-  159 (373)
T d2madh_          81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-  159 (373)
T ss_pred             EEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-
Confidence            8864          4678999999987654332221111  00000 011111111        111112222222221 


Q ss_pred             ceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec------cCCCeeEEEecCCCCCeEEEeeC
Q 016547          162 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGSA  235 (387)
Q Consensus       162 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~l~~~~~  235 (387)
                         ...+.....++.++|++...+++.+.|+.+.+||......  ......      .......+.+.+ + ..++..+.
T Consensus       160 ---~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~  232 (373)
T d2madh_         160 ---DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA--GAGLVGAMLTAAQNLLTQPAQANK-S-GRIVWPVY  232 (373)
T ss_pred             ---EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee--eEEEeeeccccCccceeeeEEECC-C-ceEEEecC
Confidence               1233345678899999977888999999999999987762  222211      112233444554 4 45556678


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccc----------cceEEEEEEcCCCCeeE---------EEecCCCeEEEEeCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVF---------GSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~ll---------~s~~~d~~i~vwd~~~~  296 (387)
                      ++.+.+|+.....    ...+..+..+          ......+++++++..++         +....++.+.+||....
T Consensus       233 ~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         233 SGKILQADISAAG----ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             CceEEEEEcCCCe----EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence            8899999887621    0111111111          12234456666655433         34556778999998875


Q ss_pred             CceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          297 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      ..               +.. ..+...+..++|+|||++++++      +++.|++|++||+.      +++.+.++.++
T Consensus       309 ~~---------------~~~-~~~~~~~~~~a~spDG~~~l~v------t~~~d~~v~v~D~~------tg~~~~~~~~~  360 (373)
T d2madh_         309 QT---------------SSQ-ISLGHDVDAISVAQDGGPDLYA------LSAGTEVLHIYDAG------AGDQDQSTVEL  360 (373)
T ss_pred             cE---------------EEE-ecCCCCeeEEEECCCCCEEEEE------EeCCCCeEEEEECC------CCCEEEEECCC
Confidence            22               222 2456678999999999875432      45566999999999      89999999988


Q ss_pred             CceEEEeeec
Q 016547          377 KAHVISCTSK  386 (387)
Q Consensus       377 ~~~v~~~~f~  386 (387)
                      ......+++.
T Consensus       361 g~~P~~l~~~  370 (373)
T d2madh_         361 GSGPQVLSVM  370 (373)
T ss_pred             CCCCcEEEEe
Confidence            7777776653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.5e-19  Score=149.65  Aligned_cols=264  Identities=8%  Similarity=0.095  Sum_probs=173.8

Q ss_pred             cEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeE--EEeccCCCceEEEEECCCCCEEEE-ecCCCeEEEEEcCCCcC
Q 016547           45 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQDNAEFALAMCPTEPYVLS-GGKDKSVVLWSIQDHIT  121 (387)
Q Consensus        45 ~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~h~~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~  121 (387)
                      ..+++++.|++|++|++...            ..+.  ....|.+ .+..|+|+|||++|++ +..|+.|++|++.....
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~------------~~l~~~~~~~~~~-~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHE------------GALTLTQVVDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTT------------SCEEEEEEEECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEEECCCCCcEEEEEEcCC------------CCeEEEEEEcCCC-CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            35678889999999999865            2222  2234555 5789999999999855 45689999999975322


Q ss_pred             ccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe-cCCCeEEEEEcc
Q 016547          122 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-GDDSCLILWDAR  200 (387)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~  200 (387)
                      ...                                     ......+...+..++|+|+| ++++++ ..++.+.+|+..
T Consensus        72 ~~~-------------------------------------~~~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          72 ALT-------------------------------------FAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             CEE-------------------------------------EEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEE
T ss_pred             cEE-------------------------------------EeeecccCCCceEEEEcCCC-CEEeecccCCCceeeeccc
Confidence            110                                     01112233456789999999 555555 467899999987


Q ss_pred             CCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCceEE------eccccceEEEEEEcC
Q 016547          201 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINK------FEGHSAAVLCVQWSP  273 (387)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~  273 (387)
                      ............+...+.++.++| +++++++++. +..|.+|+....      .....      ..........++|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~g~~p~~i~~~~  186 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDD------GHLVAQDPAEVTTVEGAGPRHMVFHP  186 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTT------SCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             cccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccC------CcceeeeceeeeeecCCCccEEEEec
Confidence            766333444556777889999999 8888777765 567999998762      22211      122345568899999


Q ss_pred             CCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee---ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCC
Q 016547          274 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  350 (387)
Q Consensus       274 ~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~d  350 (387)
                      ++..++.+....+...+|++..........        ......   .........+++++++++++++...+       
T Consensus       187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-------  251 (333)
T d1ri6a_         187 NEQYAYCVNELNSSVDVWELKDPHGNIECV--------QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-------  251 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEE--------EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-------
T ss_pred             cceeEEeeccccCceEEEeecccccceeee--------eeeeeeecCCCccccceeEEEecccCceeeecccC-------
Confidence            999877777788888999876533221100        000000   12334567889999999988855544       


Q ss_pred             ceEEEEecCCCcccccchhhhhh---hccCceEEEeeecC
Q 016547          351 GTLQIWRMSDLIYRPQDEVLAEL---EKFKAHVISCTSKP  387 (387)
Q Consensus       351 g~i~iw~~~~~~~~~~~~~~~~~---~~~~~~v~~~~f~P  387 (387)
                      +.+.+|++..      ......+   ......+..++|+|
T Consensus       252 ~~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~sp  285 (333)
T d1ri6a_         252 SLITVFSVSE------DGSVLSKEGFQPTETQPRGFNVDH  285 (333)
T ss_dssp             TEEEEEEECT------TSCCEEEEEEEECSSSCCCEEECT
T ss_pred             CeEEEEEEcC------CCCEEEEEEEeCCCCCeeEEEEeC
Confidence            8999999883      2222222   22334566788877

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.6e-18  Score=146.07  Aligned_cols=290  Identities=9%  Similarity=0.050  Sum_probs=167.1

Q ss_pred             EecCCCCcEEEEe-----cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEe-------
Q 016547           38 RELPQNTKIVATH-----TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG-------  105 (387)
Q Consensus        38 ~~~~~~~~~l~t~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~-------  105 (387)
                      +.+| +++.++..     ..+++|.+||..++            +.+..+..+..   ..++|+|||++|+++       
T Consensus         8 a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg------------~~~~~~~~g~~---~~~a~SpDg~~l~v~~~~~~~~   71 (355)
T d2bbkh_           8 APAP-DARRVYVNDPAHFAAVTQQFVIDGEAG------------RVIGMIDGGFL---PNPVVADDGSFIAHASTVFSRI   71 (355)
T ss_dssp             CCCC-CTTEEEEEECGGGCSSEEEEEEETTTT------------EEEEEEEECSS---CEEEECTTSSCEEEEEEEEEET
T ss_pred             eeCC-CCCEEEEEecccCCCcCeEEEEECCCC------------cEEEEEECCCC---CceEEcCCCCEEEEEeCCCccc
Confidence            4466 66666553     34567999999998            66666766554   379999999988764       


Q ss_pred             ---cCCCeEEEEEcCCCcCccccCCCcc--c---------CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC-
Q 016547          106 ---GKDKSVVLWSIQDHITSSATDPATA--K---------SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-  170 (387)
Q Consensus       106 ---~~d~~i~vwd~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  170 (387)
                         ..|+.|++||+.+++..........  .         .....+...............+++....+....+..+.. 
T Consensus        72 ~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          72 ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             cccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc
Confidence               3478999999988754432211100  0         011111111111112223333444444444444433221 


Q ss_pred             ------CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEe
Q 016547          171 ------TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  244 (387)
Q Consensus       171 ------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~  244 (387)
                            ....+.+++++..+++....++.+.+++.....       ..+...+....+.+ ++..++.++.++.+++|++
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~  223 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------PEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDL  223 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------CTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEEC
T ss_pred             eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------ceecceeeeccccC-CCCeEEEecCCCeEEEEec
Confidence                  112334444443333333333444444433222       12334455667777 7888889999999999999


Q ss_pred             ccCCCCCCCCceEEeccc----------cceEEEEEEcCCCCeeEEEecC---------CCeEEEEeCCCCCceeccCCC
Q 016547          245 RNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPR  305 (387)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~ll~s~~~---------d~~i~vwd~~~~~~~~~~~~~  305 (387)
                      ....    ...+.....+          ......+++++++..+++....         ...|.+||..+...       
T Consensus       224 ~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-------  292 (355)
T d2bbkh_         224 SSGD----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-------  292 (355)
T ss_dssp             TTSS----CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-------
T ss_pred             CCCc----EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-------
Confidence            8621    1111111111          1123458889999876654432         24699999987522       


Q ss_pred             CCCCCceeeeeeccCCCCeeEEEEccCCCe-EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEee
Q 016547          306 TTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT  384 (387)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  384 (387)
                              +..+. +...+.+++|+|||+. +++       +++.|+.|++||+.      +++.++++.++...-..+.
T Consensus       293 --------~~~~~-~~~~~~~~a~spDG~~~l~v-------~~~~d~~i~v~D~~------tg~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         293 --------LAKFE-MGHEIDSINVSQDEKPLLYA-------LSTGDKTLYIHDAE------SGEELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             --------EEEEE-EEEEECEEEECCSSSCEEEE-------EETTTTEEEEEETT------TCCEEEEECCCCSSCCEEE
T ss_pred             --------EEEec-CCCCEEEEEEcCCCCeEEEE-------EECCCCEEEEEECC------CCCEEEEEeCcCCCccEEE
Confidence                    22222 3346889999999985 444       44556999999999      7999998876655444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=4.4e-17  Score=135.87  Aligned_cols=238  Identities=15%  Similarity=0.068  Sum_probs=141.1

Q ss_pred             cCCCcEEEEEecCCCCcEE-EEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC----ceEEEEECCCCCEEE
Q 016547           29 IHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----AEFALAMCPTEPYVL  103 (387)
Q Consensus        29 ~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~----~v~~~~~~~~~~~l~  103 (387)
                      .+...+.+++|+| +++++ ++++.++.|.+||+.++            +.+..+..+...    .+..++|+|++++++
T Consensus        31 ~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~------------~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          31 DAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCC------------cEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            3556788999999 77665 67788999999999998            455555444321    235789999999998


Q ss_pred             Eec------------CCCeEEEEEcCCCcCccccCCCc---ccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547          104 SGG------------KDKSVVLWSIQDHITSSATDPAT---AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus       104 s~~------------~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      ++.            .+..+.+||..+...........   .......+......    ......++....+....+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~~~~~d~~~~~~~~~~~~~  173 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL----GRDLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE----SSSEEEEETTTTEEEEEECST
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE----cCCcceeeeecCcEEEEeecC
Confidence            775            35678888887654332211100   00011111111111    011112222222222222111


Q ss_pred             CCCeEEEEEccCCC-----------------------eeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC
Q 016547          169 EDTVEDVTFCPSSA-----------------------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  225 (387)
Q Consensus       169 ~~~v~~~~~~~~~~-----------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (387)
                      ... ....+.|++.                       .....+..++.+.+||..++.. .......+...+..+.++| 
T Consensus       174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  250 (337)
T d1pbyb_         174 SWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMREVRIMDVFYFSTAVNP-  250 (337)
T ss_dssp             TTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECT-
T ss_pred             Ccc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE-EEEEecCCCcceEEEEecc-
Confidence            100 0001111110                       1111222334566666666552 2233445666777888888 


Q ss_pred             CCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          226 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       226 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      ++.+++.+  ++.|++||+.+      ++.+..+. +...+.+++|+|+|+++ ++++.|+.|+|||..+.
T Consensus       251 ~~~~~~~~--~~~i~v~d~~~------~~~~~~~~-~~~~~~~~~~s~dG~~l-~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         251 AKTRAFGA--YNVLESFDLEK------NASIKRVP-LPHSYYSVNVSTDGSTV-WLGGALGDLAAYDAETL  311 (337)
T ss_dssp             TSSEEEEE--ESEEEEEETTT------TEEEEEEE-CSSCCCEEEECTTSCEE-EEESBSSEEEEEETTTC
T ss_pred             cceEEEEc--cccEEEEECCC------CcEEEEEc-CCCCEEEEEECCCCCEE-EEEeCCCcEEEEECCCC
Confidence            77777665  58999999998      78887776 56778999999999975 57888999999999985

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=7.6e-17  Score=135.61  Aligned_cols=241  Identities=12%  Similarity=0.071  Sum_probs=144.5

Q ss_pred             EEEEEecCCCCcEEEEe----------cCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC------ceEEEEECC
Q 016547           34 VNRIRELPQNTKIVATH----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN------AEFALAMCP   97 (387)
Q Consensus        34 v~~i~~~~~~~~~l~t~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~v~~~~~~~   97 (387)
                      +..++|+| ++++|++.          ..|+.|++||+.++            +....+..+...      ....++|++
T Consensus        49 ~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~~s~  115 (355)
T d2bbkh_          49 LPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTP  115 (355)
T ss_dssp             SCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCC------------CEEEEEecCCcceeecCCCCceEEEec
Confidence            34789999 77766653          34789999999998            444443332211      124689999


Q ss_pred             CCCEEEEec--CCCeEEEEEcCCCcCccccCCCcc--cCCCCCCceeccCCCCCCCCCCCCCCCCCCCc---eeecCCCC
Q 016547           98 TEPYVLSGG--KDKSVVLWSIQDHITSSATDPATA--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR---GIYNGHED  170 (387)
Q Consensus        98 ~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  170 (387)
                      ++++++.++  .+..+.+|+..++...........  ....................+...........   .....+..
T Consensus       116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  195 (355)
T d2bbkh_         116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF  195 (355)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred             CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecc
Confidence            999887654  567899999987654332211100  00000000001110000000000000000000   00112333


Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc----------CCCeeEEEecCCCCCeEEEeeCC----
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPLDDNLILTGSAD----  236 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~l~~~~~d----  236 (387)
                      .+....+.+++ ..++.++.++.+++|++..+..........+          ......+++++ ++..++....+    
T Consensus       196 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~  273 (355)
T d2bbkh_         196 LINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEW  273 (355)
T ss_dssp             BCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTT
T ss_pred             eeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCce
Confidence            45556777776 5688889999999999988763222222211          12345688888 77777765543    


Q ss_pred             ------CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCCC
Q 016547          237 ------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       237 ------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~~  296 (387)
                            +.|.+||..+      ++.+..+. +...+.+++|+|||+. ++++++.|+.|++||++++
T Consensus       274 ~~~~~~~~v~v~d~~t------~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKT------GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             CTTSCEEEEEEEETTT------CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eecCCCCeEEEEeCCC------CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                  3699999998      77777776 4566889999999985 5678888999999999986

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=2.8e-15  Score=125.25  Aligned_cols=239  Identities=11%  Similarity=0.045  Sum_probs=146.1

Q ss_pred             ecCCCcEEEEEecCCCCcE-EEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC-----CceEEEEECCCCCE
Q 016547           28 IIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----NAEFALAMCPTEPY  101 (387)
Q Consensus        28 ~~h~~~v~~i~~~~~~~~~-l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~~v~~~~~~~~~~~  101 (387)
                      +.|...+.+++|+| ++++ ++++..++.|++||+.+++            ....+.....     ..+..++|+|||++
T Consensus        36 ~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~------------~~~~~~~~~~~~~~~~~~~~v~~s~DG~~  102 (346)
T d1jmxb_          36 MPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCK------------NTFHANLSSVPGEVGRSMYSFAISPDGKE  102 (346)
T ss_dssp             CSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTE------------EEEEEESCCSTTEEEECSSCEEECTTSSE
T ss_pred             cCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCe------------eeeeecccccccccCCceEEEEEecCCCE
Confidence            45677789999999 6665 4777789999999999883            3333322111     02357899999999


Q ss_pred             EEEec------------CCCeEEEEEcCCCcCccccCCC------cccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce
Q 016547          102 VLSGG------------KDKSVVLWSIQDHITSSATDPA------TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  163 (387)
Q Consensus       102 l~s~~------------~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (387)
                      +++++            .++.+.+|+..++.........      ..........+...     ......++..+.+...
T Consensus       103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-----GPDIYKMDVKTGKYTV  177 (346)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-----SSSEEEECTTTCCEEE
T ss_pred             EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe-----CCcceEEEccCCCEEE
Confidence            87764            4778999998876443221110      00011111111111     0111222222222222


Q ss_pred             eecCCCCCeEEEEEccCC-------------------------CeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCee
Q 016547          164 IYNGHEDTVEDVTFCPSS-------------------------AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH  218 (387)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~-------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  218 (387)
                      .+..+. ....+.++|++                         ...+.++..++.+.+||..++.. .......+...+.
T Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  255 (346)
T d1jmxb_         178 ALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT-HTQEFADLTELYF  255 (346)
T ss_dssp             EECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE-EEEEEEECSSCEE
T ss_pred             EEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce-EEEEeecccceeE
Confidence            222211 11122222222                         13344445566788888887763 2344556778888


Q ss_pred             EEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          219 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       219 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+.+++ ++.+++... ++.|.+||..+      ++.+..+. +...+.+++|+|||+++ ++++.|+.|++||+++.
T Consensus       256 ~~~~~~-~~~~~~~~~-~~~v~v~d~~~------~~~~~~~~-~~~~~~~va~s~DG~~l-~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         256 TGLRSP-KDPNQIYGV-LNRLAKYDLKQ------RKLIKAAN-LDHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EEEECS-SCTTEEEEE-ESEEEEEETTT------TEEEEEEE-CSSCCCEEEECSSSSCE-EEESBSSEEEEEETTTT
T ss_pred             EEEEeC-CCCEEEEec-CCeEEEEECCC------CcEEEEEc-CCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECccC
Confidence            999999 777776655 46799999998      77777776 45678999999999975 57788999999999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=6e-14  Score=118.49  Aligned_cols=258  Identities=10%  Similarity=-0.045  Sum_probs=149.9

Q ss_pred             EEEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCc------eEEEEECCC
Q 016547           35 NRIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA------EFALAMCPT   98 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~------v~~~~~~~~   98 (387)
                      ..++|+| ++++|++++          .++.|.+||..++            +....+..+....      ...+.|+++
T Consensus        69 ~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          69 PNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             ccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCC------------cEEEEEecCCcceeEeccCCCcEEEEeC
Confidence            3789999 888887764          4578999999998            3444443333211      135677888


Q ss_pred             CCEEEEec--CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC------CCC
Q 016547           99 EPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG------HED  170 (387)
Q Consensus        99 ~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  170 (387)
                      ++.++...  .++.+.+|+.....................+...+. ....++.+..++............      ...
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v-~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFY-LLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEE-EEcCCCeEEEEEcCCceeeEEEeeeccccCccc
Confidence            87665443  456778888766543322221111111111111110 011122233333333333222221      112


Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccC----------CCeeEEEecCCCCC----------eE
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----------ADLHCVDWNPLDDN----------LI  230 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~----------~l  230 (387)
                      ....+.+.+++  .++..+.++.+.+|+..............+.          .....+++++ ++.          .+
T Consensus       215 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~  291 (373)
T d2madh_         215 LTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAW  291 (373)
T ss_pred             eeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceE
Confidence            23344555544  5667778899999998776522222221111          2223344444 333          44


Q ss_pred             EEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCee-EEEecCCCeEEEEeCCCCCceeccCCCCCCC
Q 016547          231 LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV-FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  309 (387)
Q Consensus       231 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  309 (387)
                      +....++.+.+||..+      ++.+..+. +...+..++|+|||+.+ +++++.|+.|++||+.++             
T Consensus       292 ~~~~~~~~v~~~d~~t------~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-------------  351 (373)
T d2madh_         292 KLHAAAKEVTSVTGLV------GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-------------  351 (373)
T ss_pred             EeecCCCeEEEEECCC------CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-------------
Confidence            4556677899999998      78888776 66778999999999864 578899999999999986             


Q ss_pred             CceeeeeeccCCCCeeEEEEcc
Q 016547          310 PAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       310 ~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                        +.+..+..+....+.+++.+
T Consensus       352 --~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         352 --DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             --CEEEEECCCCCCCcEEEEec
Confidence              34566666766677776654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=8.6e-15  Score=123.55  Aligned_cols=246  Identities=11%  Similarity=-0.008  Sum_probs=149.3

Q ss_pred             EEEecCCCCcEEEEec----------CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCC------ceEEEEECCCC
Q 016547           36 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN------AEFALAMCPTE   99 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~v~~~~~~~~~   99 (387)
                      .++|+| +++.|++.+          .|+.|.+||..+.            ++...+..+...      ....++|+|||
T Consensus        69 ~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~------------~~~~~i~~p~~~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             cceECC-CCCEEEEEcccCccccccccCCeEEEEECCCC------------cEeeeecCCccceecccCCccceEECCCC
Confidence            578899 777777643          4778999999998            455555433221      12368999999


Q ss_pred             CEEEEec-CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEc
Q 016547          100 PYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  178 (387)
Q Consensus       100 ~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  178 (387)
                      ++|+++. .++.+.+||+.++....                                        .+..+...    .+.
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~----------------------------------------~~~~~~~~----~~~  171 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQ----------------------------------------LTKSASCF----HIH  171 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEE----------------------------------------EEECSSCC----CCE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeE----------------------------------------EeeccCcc----eEc
Confidence            9998775 57999999998653321                                        11111111    122


Q ss_pred             cCCCeeEEEecCCCeEEEEEccCCCCceeE----EeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCC
Q 016547          179 PSSAQEFCSVGDDSCLILWDARVGTSPVIK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       179 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  254 (387)
                      |.+...++..+.||.+.+++..........    ....+...+....+.+ ++..+.+  ..+.+.+++...      ..
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~v~~~~~~~------~~  242 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWA--VASSILQGDIPA------AG  242 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEEC--BSSCCEEEECCS------SC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEe--cCCCEEEEeecC------Cc
Confidence            333356677777888888887665432211    1122334455666776 5555443  345566666654      21


Q ss_pred             ceEEe--cc----------ccceEEEEEEcCCCCeeEEEecCC--------CeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          255 PINKF--EG----------HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       255 ~~~~~--~~----------~~~~i~~~~~~~~~~~ll~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                      .....  ..          .......+++++++..+++....+        ..|.+||..+...               +
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~---------------~  307 (368)
T d1mdah_         243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT---------------S  307 (368)
T ss_dssp             CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE---------------E
T ss_pred             eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE---------------e
Confidence            11111  00          011223578889888766544322        3588999987532               2


Q ss_pred             eeeccCCCCeeEEEEccCCCe-EEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhcc
Q 016547          315 FQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  376 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~-l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  376 (387)
                      ..+. +...+.+++|+|||+. ++++       +..|+.|++||..      +++.+.++...
T Consensus       308 ~~~~-~~~~~~~~a~spDG~~~ly~s-------~~~~~~v~v~D~~------tgk~~~~i~~g  356 (368)
T d1mdah_         308 GPIS-NGHDSDAIIAAQDGASDNYAN-------SAGTEVLDIYDAA------SDQDQSSVELD  356 (368)
T ss_dssp             ECCE-EEEEECEEEECCSSSCEEEEE-------ETTTTEEEEEESS------SCEEEEECCCC
T ss_pred             EEec-CCCceeEEEECCCCCEEEEEE-------eCCCCeEEEEECC------CCCEEEEEECC
Confidence            2222 3356889999999975 5554       3445999999999      78888887744

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.58  E-value=2.1e-14  Score=120.49  Aligned_cols=250  Identities=8%  Similarity=-0.014  Sum_probs=149.7

Q ss_pred             EEEEecCCCcEEEEeccCCCCcccccCCC--C----------------CCCeEEEeccCCCceEEEEECCCCCEEEEe-c
Q 016547           46 IVATHTDSPDVLIWDVEAQPNRHAVLGAT--N----------------SRPDLILTGHQDNAEFALAMCPTEPYVLSG-G  106 (387)
Q Consensus        46 ~l~t~~~dg~v~iwd~~~~~~~~~~~~~~--~----------------~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~-~  106 (387)
                      .+++|+.+|+|.+|++.+++....+.--.  .                .........|.- .......+|||++|++. .
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP-~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHP-HISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCC-EEEEETTEEEEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCC-CcceecccCCCCEEEEEcC
Confidence            46788899999999998875443321100  0                000111122332 34556668899998654 5


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec-CCCCCeEEEEEccCCCeeE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEF  185 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l  185 (387)
                      .+++|.++|+++.+..                                        ..+. .+...+..++|+|++...+
T Consensus        92 ~~~rVavIDl~t~k~~----------------------------------------~ii~iP~g~gphgi~~spdg~t~Y  131 (441)
T d1qnia2          92 ANTRVARIRLDIMKTD----------------------------------------KITHIPNVQAIHGLRLQKVPKTNY  131 (441)
T ss_dssp             TTTEEEEEETTTTEEE----------------------------------------EEEECTTCCCEEEEEECCSSBCCE
T ss_pred             CCCEEEEEECCCCcEe----------------------------------------eEEecCCCCCccceEEeccCCEEE
Confidence            7889999999865332                                        2221 2456788999999984434


Q ss_pred             EEecCCCe------------------EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC----------
Q 016547          186 CSVGDDSC------------------LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----------  237 (387)
Q Consensus       186 ~~~~~dg~------------------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----------  237 (387)
                      +++..+..                  +..+|..+.+  ....... ...+..+.++| +++++++.+.+.          
T Consensus       132 V~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~--v~~qI~v-~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t  207 (441)
T d1qnia2         132 VFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD--VAWQVIV-DGNLDNTDADY-TGKYATSTCYNSERAVDLAGTM  207 (441)
T ss_dssp             EEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS--EEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHT
T ss_pred             EEeccCCcccccCcccccccccccceEEeecCccce--eeEEEec-CCCccceEECC-CCCEEEEEecCCCceEEEeccC
Confidence            44333333                  3457776665  3333332 34678899999 898888776542          


Q ss_pred             -------------------------------eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC
Q 016547          238 -------------------------------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  286 (387)
Q Consensus       238 -------------------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~  286 (387)
                                                     .+.+++...      ...+..+..... ...+.++|||+++++++..++
T Consensus       208 ~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~------~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~  280 (441)
T d1qnia2         208 RNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE------SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSP  280 (441)
T ss_dssp             CSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS------CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSS
T ss_pred             cceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC------CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCC
Confidence                                           222222222      344455554333 568999999999999999999


Q ss_pred             eEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          287 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       287 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      +|.|||+.+..+......    .....+.......-.....+|.++|.. ..       +.+.|..|..|++.
T Consensus       281 tvsv~d~~k~~~~~~~~~----~~~~~~~~~~~~glgplh~~fd~~g~~-yt-------s~~~ds~v~kw~~~  341 (441)
T d1qnia2         281 TVSVIAIDKLDDLFEDKI----ELRDTIVAEPELGLGPLHTTFDGRGNA-YT-------TLFIDSQVCKWNIA  341 (441)
T ss_dssp             BEEEEEGGGHHHHTTTSS----CGGGGEEECCBCCSCEEEEEECSSSEE-EE-------EETTTTEEEEEEHH
T ss_pred             cEEEEEeehhhhHhhccC----CcceEEEeecccccCcccceecCCceE-EE-------cccccceEEEeccc
Confidence            999999987433211110    000111111112223455689998754 44       55666999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=5.9e-14  Score=122.45  Aligned_cols=80  Identities=6%  Similarity=-0.007  Sum_probs=62.7

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecC---------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEEC
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC   96 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~   96 (387)
                      .+..|...|.++.|+| ++++|+.++.         ++.+.|||+.+++             ...+..|.. .+....||
T Consensus        56 ~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-------------~~~l~~~~~-~~~~~~~S  120 (470)
T d2bgra1          56 TFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-------------LITEERIPN-NTQWVTWS  120 (470)
T ss_dssp             TTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-------------ECCSSCCCT-TEEEEEEC
T ss_pred             hhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCc-------------ccccccCCc-cccccccc
Confidence            3345678899999999 8888887743         5788999999882             233556666 57899999


Q ss_pred             CCCCEEEEecCCCeEEEEEcCCCcC
Q 016547           97 PTEPYVLSGGKDKSVVLWSIQDHIT  121 (387)
Q Consensus        97 ~~~~~l~s~~~d~~i~vwd~~~~~~  121 (387)
                      |||+++|... ++.+.+|+..++..
T Consensus       121 PDG~~ia~~~-~~~l~~~~~~~g~~  144 (470)
T d2bgra1         121 PVGHKLAYVW-NNDIYVKIEPNLPS  144 (470)
T ss_dssp             SSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred             cCcceeeEee-cccceEEECCCCce
Confidence            9999999865 78999999887644

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.5e-11  Score=98.45  Aligned_cols=245  Identities=12%  Similarity=0.093  Sum_probs=150.9

Q ss_pred             cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC-C--eEEEEEcCCCcCccccCCCccc
Q 016547           55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-K--SVVLWSIQDHITSSATDPATAK  131 (387)
Q Consensus        55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~  131 (387)
                      .|.|-|.+..            .......+. . .+..-+|||||+.||....+ +  .+.+.+....            
T Consensus        20 ~l~i~d~dG~------------~~~~l~~~~-~-~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~------------   73 (269)
T d2hqsa1          20 ELRVSDYDGY------------NQFVVHRSP-Q-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG------------   73 (269)
T ss_dssp             EEEEEETTSC------------SCEEEEEES-S-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC------------
T ss_pred             EEEEEcCCCC------------CcEEEecCC-C-ceeeeEECCCCCEEEEEEeeccCcceeeeecccC------------
Confidence            5777777665            344444443 3 47789999999999865432 2  3444444322            


Q ss_pred             CCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee
Q 016547          132 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  211 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  211 (387)
                                                   ....+..+........|+|++..+++....++...++........ .....
T Consensus        74 -----------------------------~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~  123 (269)
T d2hqsa1          74 -----------------------------AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVT  123 (269)
T ss_dssp             -----------------------------CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECC
T ss_pred             -----------------------------ceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc-ceeee
Confidence                                         113445566778899999999665555555555555444433321 22223


Q ss_pred             ccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEE
Q 016547          212 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  291 (387)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vw  291 (387)
                      ..........+++.....+++...+|...+|.....     ......+...........|+|+++.++......+...+|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN-----GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-----SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             eccccccccccccccccceecccccCCceEeeeecc-----cccceeeecccccccccccccccceeEEEeecCCceeee
Confidence            334444455666623445555555665555544432     233444455667788889999999887777767776666


Q ss_pred             eCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhh
Q 016547          292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA  371 (387)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~  371 (387)
                      .+......               .....+........|+|||++|+.+...     +....|++++++       +....
T Consensus       199 ~~~~~~~~---------------~~~~~~~~~~~~p~~SPDG~~i~f~s~~-----~~~~~l~~~~~d-------g~~~~  251 (269)
T d2hqsa1         199 KQDLATGG---------------VQVLSSTFLDETPSLAPNGTMVIYSSSQ-----GMGSVLNLVSTD-------GRFKA  251 (269)
T ss_dssp             EEETTTCC---------------EEECCCSSSCEEEEECTTSSEEEEEEEE-----TTEEEEEEEETT-------SCCEE
T ss_pred             Eeeccccc---------------ceEeecCccccceEECCCCCEEEEEEcC-----CCCcEEEEEECC-------CCCEE
Confidence            65543221               1122344566788999999998876532     234688999998       33345


Q ss_pred             hhhccCceEEEeeecC
Q 016547          372 ELEKFKAHVISCTSKP  387 (387)
Q Consensus       372 ~~~~~~~~v~~~~f~P  387 (387)
                      .+....+.+...+|||
T Consensus       252 ~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ECCCSSSEEEEEEECC
T ss_pred             EEeCCCCcEEeEEeCC
Confidence            5666678889999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.49  E-value=2.4e-11  Score=101.60  Aligned_cols=290  Identities=12%  Similarity=0.066  Sum_probs=159.0

Q ss_pred             eeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEecc-CCCc
Q 016547           11 FQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNA   89 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~   89 (387)
                      +.|+.+...-.+...........+.-|+|+| ++++|.+... +.+..|.+....            .......+ .+..
T Consensus        19 ~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~   84 (365)
T d1jofa_          19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPT------------EIVHEASHPIGGH   84 (365)
T ss_dssp             EEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETT------------EEEEEEEEECCSS
T ss_pred             EEEcCCCCeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCC------------CeEEEeeecCCCC
Confidence            4555554322222223345666677899999 7777766544 568888776541            11111111 1112


Q ss_pred             eEEEEECCCCCE--EEEec-CCCeEEEEEcCCCcCccc-cCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCce-e
Q 016547           90 EFALAMCPTEPY--VLSGG-KDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-I  164 (387)
Q Consensus        90 v~~~~~~~~~~~--l~s~~-~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  164 (387)
                      ...+.++++++.  ++++. ..++|..+.+........ ....      ..                   ........ .
T Consensus        85 p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~------~~-------------------~~~~~~~~~~  139 (365)
T d1jofa_          85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS------ET-------------------GKLEKNVQNY  139 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC------TT-------------------CCEEEEEEEE
T ss_pred             cEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeee------ec-------------------ceecCcccCc
Confidence            247788888884  44433 346666665532110000 0000      00                   00000000 0


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCce-eEE--eeccCCCeeEEEecCCCCCeEEEee-CCCeEE
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKV--EKAHDADLHCVDWNPLDDNLILTGS-ADNSVR  240 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~  240 (387)
                      .......+.++.|+|+|..++++......|.+|+........ ...  ........+.++|+| +++++.+.. .++.|.
T Consensus       140 ~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~  218 (365)
T d1jofa_         140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRIC  218 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             ccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEE
Confidence            111233478999999995555555556789998865433111 111  122356789999999 888775555 578999


Q ss_pred             EEEeccCCCCCCCCceEEec-----------------cccceEEEEEEcCCCCeeEEEecCC-----CeEEEEeCCCCCc
Q 016547          241 MFDRRNLTSNGVGSPINKFE-----------------GHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEKVGK  298 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~ll~s~~~d-----~~i~vwd~~~~~~  298 (387)
                      +|+.....    ...+....                 .+......+.++|+|++|+++...+     +.|..|++.....
T Consensus       219 v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         219 EYVIDPAT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEECTTT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             EEEecCCC----ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            99987622    11111111                 1223466889999999987665433     3377787766432


Q ss_pred             eeccCCCCCCCCceeeeeeccCCCCeeEEEEcc-CCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          299 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ....         ..+............++++| +|++|+++..       .++.|.+|+++.
T Consensus       295 ~~~~---------~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~-------~s~~v~v~~~~~  341 (365)
T d1jofa_         295 IEKQ---------LFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-------QEGWLEIYRWKD  341 (365)
T ss_dssp             EEEE---------EEEEECSSCCTTCCCEEECTTCTTEEEEECS-------SSCEEEEEEEET
T ss_pred             eeeE---------eEeeEEEcCCCCccEEEecCCCCCEEEEEeC-------CCCeEEEEEEeC
Confidence            2110         11111222334567899998 7898887544       459999999873

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=4.8e-12  Score=110.15  Aligned_cols=148  Identities=11%  Similarity=0.175  Sum_probs=102.9

Q ss_pred             EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEe-----ccCCCceEEEEECCCCCEEEEecC---
Q 016547           36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-----GHQDNAEFALAMCPTEPYVLSGGK---  107 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~~v~~~~~~~~~~~l~s~~~---  107 (387)
                      .+.|.+ +++++..  .|+.+.+||+.+++            ....+.     .|.. .|.++.|||||++|+.++.   
T Consensus        21 ~~~W~~-d~~~~~~--~~~~~~~~~~~t~~------------~~~~~~~~~~~~~~~-~i~~~~~SpDg~~i~~~~~~~~   84 (470)
T d2bgra1          21 SLRWIS-DHEYLYK--QENNILVFNAEYGN------------SSVFLENSTFDEFGH-SINDYSISPDGQFILLEYNYVK   84 (470)
T ss_dssp             CCEECS-SSEEEEE--SSSCEEEEETTTCC------------EEEEECTTTTTTSSS-CCCEEEECTTSSEEEEEEEEEE
T ss_pred             CCEeCC-CCEEEEE--cCCcEEEEECCCCC------------EEEEEchhhhhhccC-ccceeEECCCCCEEEEEECCcc
Confidence            467888 7777765  47789999999984            333333     3334 5889999999999998743   


Q ss_pred             ------CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          108 ------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       108 ------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                            ++.+.+||+.++..                                         ..+..+...+..+.|+|||
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~SPDG  123 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTWSPVG  123 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEECSST
T ss_pred             eeeeccCceEEEEECCCCcc-----------------------------------------cccccCCccccccccccCc
Confidence                  56788999986532                                         3455677889999999999


Q ss_pred             CeeEEEecCCCeEEEEEccCCCCceeEEe-------e---------ccCCCeeEEEecCCCCCeEEEeeCCCe-EEEEE
Q 016547          182 AQEFCSVGDDSCLILWDARVGTSPVIKVE-------K---------AHDADLHCVDWNPLDDNLILTGSADNS-VRMFD  243 (387)
Q Consensus       182 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~---------~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~~~d  243 (387)
                       +.++.. .++.+.+|+...++.......       .         ...+....+.|+| ++++|+....|.. +..|+
T Consensus       124 -~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         124 -HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             -TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEE
T ss_pred             -ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceEE
Confidence             666664 567899999887762111110       0         0123346688999 9999999876533 44443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.38  E-value=4e-12  Score=106.59  Aligned_cols=282  Identities=11%  Similarity=0.061  Sum_probs=144.8

Q ss_pred             CCCcEEEEEecCCCCcEEE-EecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCE--EEEec
Q 016547           30 HPGEVNRIRELPQNTKIVA-THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--VLSGG  106 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~-t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~--l~s~~  106 (387)
                      |........+.| +|++|. +...+++|.++|+++.            +....+..........++|+|+|+.  ++..+
T Consensus        70 hhP~~s~t~gtp-DGr~lfV~d~~~~rVavIDl~t~------------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~  136 (441)
T d1qnia2          70 HHPHISMTDGRY-DGKYLFINDKANTRVARIRLDIM------------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA  136 (441)
T ss_dssp             CCCEEEEETTEE-EEEEEEEEETTTTEEEEEETTTT------------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEE
T ss_pred             cCCCcceecccC-CCCEEEEEcCCCCEEEEEECCCC------------cEeeEEecCCCCCccceEEeccCCEEEEEecc
Confidence            555666777778 777774 5567889999999998            5555555433335789999999984  44444


Q ss_pred             CCCe-----------------EEEEEcCCCcCccccCCC---cccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeec
Q 016547          107 KDKS-----------------VVLWSIQDHITSSATDPA---TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  166 (387)
Q Consensus       107 ~d~~-----------------i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (387)
                      .+..                 +..+|..+..........   ........+...+........... .+..+......+.
T Consensus       137 ~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~-id~~t~~~~d~i~  215 (441)
T d1qnia2         137 EFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVD-LAGTMRNDRDWVV  215 (441)
T ss_dssp             CSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSS-HHHHTCSSBCEEE
T ss_pred             CCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEE-EeccCcceEEEEE
Confidence            3321                 233444432211110000   000000111111111100000000 0000000000000


Q ss_pred             CCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEE-EeeCCCeEEEEEec
Q 016547          167 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRR  245 (387)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~~~d~~  245 (387)
                      .. ..-..+.+.|+| +++. .+.++.+.+++.....  ....+... .....+.++| ++++++ ++..+++|.+||+.
T Consensus       216 v~-n~p~~~~~~~dG-k~~~-v~~~~v~vvd~~~~~~--v~~~IPvg-ksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         216 VF-NVERIAAAVKAG-NFKT-IGDSKVPVVDGRGESE--FTRYIPVP-KNPHGLNTSP-DGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             EE-EHHHHHHHHHTT-CCBC-CTTCCCCEEECSSSCS--SEEEECCB-SSCCCEEECT-TSCEEEEECTTSSBEEEEEGG
T ss_pred             eC-CccceEEEecCC-CEEE-eCCCCcEEEEcccCCc--eEEEEeCC-CCccCceECC-CCCEEEEeCCcCCcEEEEEee
Confidence            00 001122334555 3332 2345666666655444  34455444 3468899999 888765 56779999999987


Q ss_pred             cCCCC--CCCCceEEec---cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeee----
Q 016547          246 NLTSN--GVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----  316 (387)
Q Consensus       246 ~~~~~--~~~~~~~~~~---~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----  316 (387)
                      +....  ........+.   ...-.....+|.++|. .+.+...|..|..|++...........     ....+..    
T Consensus       289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~-~yts~~~ds~v~kw~~~~~~~~~~~~~-----~~~v~~~~~v~  362 (441)
T d1qnia2         289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIADAIKHYNGDR-----VNYIRQKLDVQ  362 (441)
T ss_dssp             GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEEEEEHHHHHHHHTTCC-----CCCEEEEEECS
T ss_pred             hhhhHhhccCCcceEEEeecccccCcccceecCCce-EEEcccccceEEEeccchhhhhhccCC-----CceeEeccccc
Confidence            63210  0011111111   1122356678999986 578899999999999864211111000     0011222    


Q ss_pred             -eccCCCCeeEEEEccCCCeEEE
Q 016547          317 -HAGHRDKVVDFHWNASDPWTVV  338 (387)
Q Consensus       317 -~~~~~~~v~~~~~~~~~~~l~~  338 (387)
                       ..+|...+.+.+++|+|+||+.
T Consensus       363 y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         363 YQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             SCEEEEEETTTTSTTCCCCEEEE
T ss_pred             cCCCCCccccccccCCCCcEEEe
Confidence             2578888889999999999883

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=3e-09  Score=86.23  Aligned_cols=243  Identities=8%  Similarity=0.007  Sum_probs=155.8

Q ss_pred             eeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEE
Q 016547           24 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  103 (387)
Q Consensus        24 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~  103 (387)
                      ....+.-...+..+++.| +++++++...+++|..|+.+..              ...+..... .+.+++|+++|++++
T Consensus        20 v~~~~p~~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~--------------~~~~~~~~~-~~~gla~~~dG~l~v   83 (302)
T d2p4oa1          20 IITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN--------------QQIHATVEG-KVSGLAFTSNGDLVA   83 (302)
T ss_dssp             EEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC--------------EEEEEECSS-EEEEEEECTTSCEEE
T ss_pred             EEEECCCCCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC--------------EEEEEcCCC-CcceEEEcCCCCeEE
Confidence            334444445688999999 8999999999999888886543              223333343 578999999999988


Q ss_pred             EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCe
Q 016547          104 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       104 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  183 (387)
                      +...++.+..|+.........                                    . ............+.+.+++ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~------------------------------------~-~~~~~~~~~~n~i~~~~~g-~  125 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDGTVE------------------------------------T-LLTLPDAIFLNGITPLSDT-Q  125 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEE------------------------------------E-EEECTTCSCEEEEEESSSS-E
T ss_pred             EecCCceEEEEEeccccccee------------------------------------e-ccccCCccccceeEEccCC-C
Confidence            888888888888754211000                                    0 0111234567899999998 8


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEe--------eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCc
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVE--------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  255 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  255 (387)
                      ++++.+.++.+..+|...........-        .........+.++.  +.++++.+..+.|..++......   ...
T Consensus       126 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~---~~~  200 (302)
T d2p4oa1         126 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDK---PGE  200 (302)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSC---BCC
T ss_pred             EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEecccccccc---ccc
Confidence            888888889999888876541111100        01112345566653  45666777788898888775321   111


Q ss_pred             eEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEE---ccC
Q 016547          256 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW---NAS  332 (387)
Q Consensus       256 ~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~  332 (387)
                      ...+ ........+++.++|. ++++...++.|..++.....              ..+......-...++++|   ++|
T Consensus       201 ~~~~-~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~~--------------~~~~~~~~~~~~pt~vafg~~~~D  264 (302)
T d2p4oa1         201 PEIF-VEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRST--------------TIIAQAEQGVIGSTAVAFGQTEGD  264 (302)
T ss_dssp             CEEE-EESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCE--------------EEEECGGGTCTTEEEEEECCSTTT
T ss_pred             cccc-cCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCCE--------------EEEEecCCCCCCceEEEEcCCCCC
Confidence            1111 1233456799999998 56677778889988766421              112222333456799999   678


Q ss_pred             CCeEEEEec
Q 016547          333 DPWTVVSVS  341 (387)
Q Consensus       333 ~~~l~~s~s  341 (387)
                      ++.|.++.+
T Consensus       265 ~~~Lyvtt~  273 (302)
T d2p4oa1         265 CTAIYVVTN  273 (302)
T ss_dssp             TTEEEEEEC
T ss_pred             CCEEEEECC
Confidence            888877643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=2.7e-09  Score=84.47  Aligned_cols=240  Identities=9%  Similarity=-0.031  Sum_probs=145.6

Q ss_pred             CCCcEEEEEecCCCCcEEEE-ecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           30 HPGEVNRIRELPQNTKIVAT-HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        30 h~~~v~~i~~~~~~~~~l~t-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      +.-.-..|++.+ ++++.++ .+..+.+..++.....           .......+..  ....++++++++.+++....
T Consensus        12 ~~~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~--~p~gvav~~~g~i~v~d~~~   77 (260)
T d1rwia_          12 FRLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTG-----------TTVLPFNGLY--QPQGLAVDGAGTVYVTDFNN   77 (260)
T ss_dssp             SCCCEEEEEECT-TCCEEEEECSSSCEEEEEC----C-----------EEECCCCSCC--SCCCEEECTTCCEEEEETTT
T ss_pred             CcCCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCce-----------EEEeccCCcc--CceEEEEcCCCCEEEeeeee
Confidence            445568999998 6775554 4556777777665541           1111112222  23578999999888777766


Q ss_pred             CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEe
Q 016547          109 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  188 (387)
Q Consensus       109 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  188 (387)
                      +.+++++-.+....                                        .. ........++++.+++ +++++-
T Consensus        78 ~~i~~~~~~~~~~~----------------------------------------~~-~~~~~~p~~iavd~~g-~i~v~d  115 (260)
T d1rwia_          78 RVVTLAAGSNNQTV----------------------------------------LP-FDGLNYPEGLAVDTQG-AVYVAD  115 (260)
T ss_dssp             EEEEECTTCSCCEE----------------------------------------CC-CCSCCSEEEEEECTTC-CEEEEE
T ss_pred             ceeeeeeeccceee----------------------------------------ee-eeeeeecccccccccc-eeEeec
Confidence            66666543322111                                        00 1112456889999988 677776


Q ss_pred             cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEe-ccccceEE
Q 016547          189 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL  267 (387)
Q Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~i~  267 (387)
                      ..+..+..++......  .............+++++ +++++++...++.|..+|...      . ....+ ...-....
T Consensus       116 ~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~------~-~~~~~~~~~~~~p~  185 (260)
T d1rwia_         116 RGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES------N-NQVVLPFTDITAPW  185 (260)
T ss_dssp             GGGTEEEEECTTCSSC--EECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTT------C-CEEECCCSSCCSEE
T ss_pred             ccccccccccccccee--eeeeecccCCcceeeecC-CCCEeeecccccccccccccc------c-eeeeeeccccCCCc
Confidence            6677788877655441  222222234567899999 888888888889999998774      2 22222 22334568


Q ss_pred             EEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCC
Q 016547          268 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  347 (387)
Q Consensus       268 ~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg  347 (387)
                      .+++.++|. |+++....+.|..++.......              .. ....-.....|+++++|.. +++-..     
T Consensus       186 gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~~--------------~~-~~~~~~~P~~i~~d~~g~l-~vad~~-----  243 (260)
T d1rwia_         186 GIAVDEAGT-VYVTEHNTNQVVKLLAGSTTST--------------VL-PFTGLNTPLAVAVDSDRTV-YVADRG-----  243 (260)
T ss_dssp             EEEECTTCC-EEEEETTTTEEEEECTTCSCCE--------------EC-CCCSCCCEEEEEECTTCCE-EEEEGG-----
T ss_pred             cceeeeeee-eeeeecCCCEEEEEeCCCCeEE--------------EE-ccCCCCCeEEEEEeCCCCE-EEEECC-----
Confidence            999999987 6778888888888876543111              11 1122245689999998864 444332     


Q ss_pred             CCCceEEEEecC
Q 016547          348 GGGGTLQIWRMS  359 (387)
Q Consensus       348 ~~dg~i~iw~~~  359 (387)
                        +++|+..+..
T Consensus       244 --~~rI~~i~~~  253 (260)
T d1rwia_         244 --NDRVVKLTSL  253 (260)
T ss_dssp             --GTEEEEECCC
T ss_pred             --CCEEEEEeCC
Confidence              2666655544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.30  E-value=1.7e-10  Score=96.71  Aligned_cols=200  Identities=10%  Similarity=0.012  Sum_probs=122.5

Q ss_pred             EEEEecCCCCcEEEEec-CCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEE
Q 016547           35 NRIRELPQNTKIVATHT-DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  113 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~v  113 (387)
                      ..++|+| ++++|+++. .++.+.+||+.+.            +....+..+....+    +......++..+.||++.+
T Consensus       127 ~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         127 HIIGNCA-SSACLLFFLFGSSAAAGLSVPGA------------SDDQLTKSASCFHI----HPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             TSEEECT-TSSCEEEEECSSSCEEEEEETTT------------EEEEEEECSSCCCC----EEEETTEEECCCCTTSCEE
T ss_pred             cceEECC-CCCEEEEEeCCCCeEEEEECCCC------------cEeEEeeccCcceE----ccCCCceEEEEcCCCCEEE
Confidence            4688999 777676654 6799999999998            55555555543211    1112345666777888888


Q ss_pred             EEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe
Q 016547          114 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  193 (387)
Q Consensus       114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  193 (387)
                      +++...........                                  ......+...+..+.+.+++ ..+.+  ..+.
T Consensus       190 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~  232 (368)
T d1mdah_         190 SDLAAAPAAAGIVG----------------------------------AQCTGAQNCSSQAAQANYPG-MLVWA--VASS  232 (368)
T ss_dssp             EECCSSCCCCEECC----------------------------------CCSCTTSCBCSCCEEETTTT-EEEEC--BSSC
T ss_pred             EEecCCceeeeeee----------------------------------cccccccccceeecccccCc-EEEEe--cCCC
Confidence            88765422111100                                  01112233344456666666 43433  3455


Q ss_pred             EEEEEccCCCCceeEEeec----------cCCCeeEEEecCCCCCeEEEeeCC---------CeEEEEEeccCCCCCCCC
Q 016547          194 LILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVGS  254 (387)
Q Consensus       194 i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~  254 (387)
                      +.+++..............          .......++++| ++..++....+         ..|.+||..+      ++
T Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t------~~  305 (368)
T d1mdah_         233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASV------GQ  305 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSS------CC
T ss_pred             EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEECCC------Cc
Confidence            6666655544211111111          112234578888 66666554322         3588999998      77


Q ss_pred             ceEEeccccceEEEEEEcCCCCe-eEEEecCCCeEEEEeCCCC
Q 016547          255 PINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       255 ~~~~~~~~~~~i~~~~~~~~~~~-ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+..+. +...+.+++|+|||+. +++++..|+.|++||..++
T Consensus       306 ~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         306 TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            777776 4567889999999974 6778888999999999885

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.22  E-value=2.7e-08  Score=80.72  Aligned_cols=250  Identities=8%  Similarity=0.066  Sum_probs=147.8

Q ss_pred             CcEEEEEecCCCCcEEEEecC-------CCcEEEEeccCCCCcccccCCCCCCCeEEEeccC---CCceEEEEECCCCCE
Q 016547           32 GEVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ---DNAEFALAMCPTEPY  101 (387)
Q Consensus        32 ~~v~~i~~~~~~~~~l~t~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~~v~~~~~~~~~~~  101 (387)
                      .....++|.+ +++++++...       +|+|..||.+++.            .........   ...-..+.|.++++.
T Consensus        18 ~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~------------~~~~~~~~~~~~~g~P~Gl~~~~dg~~   84 (314)
T d1pjxa_          18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGK------------KTVICKPEVNGYGGIPAGCQCDRDANQ   84 (314)
T ss_dssp             TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCC------------EEEEECCEETTEECCEEEEEECSSSSE
T ss_pred             CCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCc------------EEEEECCccccCCCcceeEEEeCCCCE
Confidence            3356778888 7777766433       4678888888762            111111111   012357999999998


Q ss_pred             EEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC-CCCeEEEEEccC
Q 016547          102 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPS  180 (387)
Q Consensus       102 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~  180 (387)
                      ++++...+.|...+.+..........                                     ..+. -...+.+++.++
T Consensus        85 l~vad~~~~i~~~~~~g~~~~~~~~~-------------------------------------~~g~~~~~pndl~~d~~  127 (314)
T d1pjxa_          85 LFVADMRLGLLVVQTDGTFEEIAKKD-------------------------------------SEGRRMQGCNDCAFDYE  127 (314)
T ss_dssp             EEEEETTTEEEEEETTSCEEECCSBC-------------------------------------TTSCBCBCCCEEEECTT
T ss_pred             EEEEECCCeEEEEeCCCcEEEEEecc-------------------------------------ccccccCCCcEEEECCC
Confidence            88877777788888764321110000                                     0000 113567888898


Q ss_pred             CCeeEEEecC---------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-----eEEEeeCCCeEE
Q 016547          181 SAQEFCSVGD---------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-----LILTGSADNSVR  240 (387)
Q Consensus       181 ~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~~~~~dg~i~  240 (387)
                      | ++.++-..               .|.|..++.. ++  .. .....-...+.++|+| +++     ++++-+..+.|.
T Consensus       128 G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~--~~-~~~~~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~  201 (314)
T d1pjxa_         128 G-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MI-QVDTAFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLW  201 (314)
T ss_dssp             S-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EE-EEEEEESSEEEEEEEE-CTTSCEEEEEEEETTTTEEE
T ss_pred             C-CEEEecCccCcccccccceeccCCceEEEEeec-Cc--ee-EeeCCcceeeeeEECC-CCCcceeEEEEEeecccceE
Confidence            8 66665321               2344444432 22  12 2222333457899988 654     555556788999


Q ss_pred             EEEeccCCCCCCCCceEEecc-ccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc
Q 016547          241 MFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  319 (387)
Q Consensus       241 ~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (387)
                      .||+.........+....+.. .......+++..+|+ |+++....+.|.+||.+...               ....+..
T Consensus       202 ~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~---------------~~~~i~~  265 (314)
T d1pjxa_         202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQ---------------PKMRIRC  265 (314)
T ss_dssp             EEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBS---------------CSEEEEC
T ss_pred             EeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCE---------------EEEEEEC
Confidence            999875210000001112221 223467899999998 56676678899999977531               1222334


Q ss_pred             CCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          320 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       320 ~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ....+++++|.|+++.|+++.+.+       |+|...++..
T Consensus       266 p~~~~t~~afg~d~~~lyVt~~~~-------g~i~~~~~~~  299 (314)
T d1pjxa_         266 PFEKPSNLHFKPQTKTIFVTEHEN-------NAVWKFEWQR  299 (314)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTT-------TEEEEEECSS
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCC-------CcEEEEECCC
Confidence            445789999999998888865544       8888888774

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.22  E-value=2.1e-09  Score=89.54  Aligned_cols=139  Identities=7%  Similarity=0.049  Sum_probs=86.1

Q ss_pred             CCCeeEEEecCCCCCeEEEeeC-CCeEEEEEeccCCCCCCCCc--eEEec--cccceEEEEEEcCCCCeeEEEecCCCeE
Q 016547          214 DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP--INKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLL  288 (387)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~ll~s~~~d~~i  288 (387)
                      ...+.++.|+| +++++++++. ...|.+|+....     +..  .....  ........++|+|++++++++...++.|
T Consensus       144 ~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~-----g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V  217 (365)
T d1jofa_         144 NTGIHGMVFDP-TETYLYSADLTANKLWTHRKLAS-----GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             TCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTT-----SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCC-----CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEE
Confidence            34578999999 9998887765 457888876642     222  11221  2345688999999999988888889999


Q ss_pred             EEEeCCCCCceeccCC----CCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          289 NIWDYEKVGKKVEQGP----RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       289 ~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      .+|++...........    ...............+......+.++|+|++++++...+  -....+.|..|++..
T Consensus       218 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~--~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN--KFELQGYIAGFKLRD  291 (365)
T ss_dssp             EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES--STTSCCEEEEEEECT
T ss_pred             EEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC--CCccceEEEEEEecC
Confidence            9999976432211000    000000000000112233467889999999999876544  333445688888763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=3.8e-07  Score=74.10  Aligned_cols=254  Identities=9%  Similarity=0.038  Sum_probs=150.3

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC--
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--  108 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d--  108 (387)
                      .-.+..++|.+ ++++.++-...+.|.-|+.++.            .....+..... ....++++++|+++++...+  
T Consensus        39 ~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~------------~~~~~~~~~~~-~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          39 GLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             CCCEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEECTTSS
T ss_pred             CcCcEeCEECC-CCCEEEEECCCCEEEEEECCCC------------eEEEEEeCCCC-CeeEEEECCCCCEEEEecCCCc
Confidence            34457899988 7888888888899999988776            33333333333 35799999999877765332  


Q ss_pred             CeEEEEEc--CCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          109 KSVVLWSI--QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       109 ~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      ....++.+  ........                                      ..-..-......+++.++| ++++
T Consensus       105 ~~~~i~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~nd~~~d~~G-~l~v  145 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDI--------------------------------------IEDLSTAYCIDDMVFDSKG-GFYF  145 (319)
T ss_dssp             SCCEEEEECTTSCSCEEE--------------------------------------ECSSSSCCCEEEEEECTTS-CEEE
T ss_pred             cceeEEEEcCCCceeeee--------------------------------------ccCCCcccCCcceeEEecc-ceee
Confidence            23333333  22111000                                      0000112346789999998 6666


Q ss_pred             EecC------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeCCCeEEEEEeccCCCCCCCCceEEe
Q 016547          187 SVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKF  259 (387)
Q Consensus       187 ~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  259 (387)
                      +...      .+.+..++.....   .......-...+.++|+| +++.| ++-+..+.|..||+...     +......
T Consensus       146 td~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~-----g~~~~~~  216 (319)
T d2dg1a1         146 TDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD-----GVTIQPF  216 (319)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT-----SSSEEEE
T ss_pred             cccccccccCcceeEEEecccce---eEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCC-----Cceeccc
Confidence            5432      2335555544433   222222334567899999 87755 55566789999998753     2221111


Q ss_pred             -------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccC
Q 016547          260 -------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  332 (387)
Q Consensus       260 -------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  332 (387)
                             .........+++.++|+ |+++....+.|.+||-. + +......        +-....++...+++++|.++
T Consensus       217 ~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~-G-~~l~~i~--------~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         217 GATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR-G-YPIGQIL--------IPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             EEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT-S-CEEEEEE--------CTTGGGTCSCBCCEEEECTT
T ss_pred             cceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCC-C-cEEEEEe--------CCCcCCCcCceeeeEEEeCC
Confidence                   11123457899999998 56677778999999954 2 2211000        00001234556889999998


Q ss_pred             CCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          333 DPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       333 ~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ...++++.++.  .....|.|...+..
T Consensus       286 ~~~~~~t~~~~--~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         286 TNQLIICSNDI--EMGGGSMLYTVNGF  310 (319)
T ss_dssp             SCEEEEEEECG--GGTCCEEEEEEECS
T ss_pred             CCEEEEEcCCC--CcCCceeEEEEeCC
Confidence            88887776544  44455666666654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=1.9e-07  Score=74.42  Aligned_cols=234  Identities=12%  Similarity=0.140  Sum_probs=149.2

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEec------cCCCceEEEEECCC-CCEEEE-
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------HQDNAEFALAMCPT-EPYVLS-  104 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~------h~~~~v~~~~~~~~-~~~l~s-  104 (387)
                      ....|++.+ +++++++-..+..|++||.+..             .+..+..      ... .-..+++..+ +.++++ 
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~-------------~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~   88 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDIIVTE   88 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEEEEEE
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCCCC-------------EEEEecccCCCccccc-ccccccccccccccceec
Confidence            368999998 7888888777889999997643             2222211      011 1134555444 333433 


Q ss_pred             ecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceee-cCCCCCeEEEEEccCCCe
Q 016547          105 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQ  183 (387)
Q Consensus       105 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  183 (387)
                      .+.++.|..++.....                                         ...+ .........+++.+++ .
T Consensus        89 ~~~~~~i~~~~~~g~~-----------------------------------------~~~~~~~~~~~p~~~avd~~G-~  126 (279)
T d1q7fa_          89 RSPTHQIQIYNQYGQF-----------------------------------------VRKFGATILQHPRGVTVDNKG-R  126 (279)
T ss_dssp             CGGGCEEEEECTTSCE-----------------------------------------EEEECTTTCSCEEEEEECTTS-C
T ss_pred             cCCccccccccccccc-----------------------------------------eeecCCCcccccceeccccCC-c
Confidence            3345567666653211                                         1111 1223456788999888 6


Q ss_pred             eEEEecCCCeEEEEEccCCCCceeEEe--eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-
Q 016547          184 EFCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  260 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-  260 (387)
                      ++++....+.+.+++... +  .+..+  ..+......+++.+ +++++++....+.|++||..       ++.+.++. 
T Consensus       127 i~v~~~~~~~~~~~~~~g-~--~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~-------G~~~~~~g~  195 (279)
T d1q7fa_         127 IIVVECKVMRVIIFDQNG-N--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLRQIGG  195 (279)
T ss_dssp             EEEEETTTTEEEEECTTS-C--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEEEESC
T ss_pred             EEEEeeccceeeEeccCC-c--eeecccccccccccceeeecc-ceeEEeeeccccceeeeecC-------Cceeeeecc
Confidence            777777778888888643 2  23332  34556778899999 88898888889999999876       66666663 


Q ss_pred             -cccceEEEEEEcCCCCeeEEEec-CCCeEEEEeCCCCCceeccCCCCCCCCceeeeee--ccCCCCeeEEEEccCCCeE
Q 016547          261 -GHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWT  336 (387)
Q Consensus       261 -~~~~~i~~~~~~~~~~~ll~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l  336 (387)
                       +.......|++.++|+ ++++-. .++.|.+|+...  +              .+..+  .........+++.|+|. +
T Consensus       196 ~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G--~--------------~~~~~~~~~~~~~p~~vav~~dG~-l  257 (279)
T d1q7fa_         196 EGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG--Q--------------LISALESKVKHAQCFDVALMDDGS-V  257 (279)
T ss_dssp             TTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS--C--------------EEEEEEESSCCSCEEEEEEETTTE-E
T ss_pred             cccccCCcccccccCCe-EEEEECCCCcEEEEECCCC--C--------------EEEEEeCCCCCCCEeEEEEeCCCc-E
Confidence             2344578999999998 555543 456799998542  1              22222  22234578999999986 4


Q ss_pred             EEEecCCCCCCCCCceEEEEecCC
Q 016547          337 VVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       337 ~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      +++.        .+++|++|....
T Consensus       258 ~V~~--------~n~~v~~fr~~~  273 (279)
T d1q7fa_         258 VLAS--------KDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEE--------TTTEEEEEECSC
T ss_pred             EEEe--------CCCeEEEEEeee
Confidence            4432        348999999984

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=8.6e-08  Score=75.98  Aligned_cols=226  Identities=12%  Similarity=0.013  Sum_probs=134.1

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEecC-CC--cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEE
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  102 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l  102 (387)
                      .+..+.+.+..-+|+| +|+.||-... .+  .+.+.+....             ....+..+.. ......|+|+|+.+
T Consensus        33 ~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~spdg~~i   97 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG-------------AVRQVASFPR-HNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-------------CEEEEECCSS-CEEEEEECTTSSEE
T ss_pred             EEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccC-------------ceeEEeeeec-ccccceecCCCCee
Confidence            3445678888999999 8888875543 33  3555555554             2334444544 56789999999988


Q ss_pred             EEecC-CCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCC
Q 016547          103 LSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  181 (387)
Q Consensus       103 ~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (387)
                      +.... ++...++.......                                       ................+++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~  138 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASG---------------------------------------QIRQVTDGRSNNTEPTWFPDS  138 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTC---------------------------------------CEEECCCCSSCEEEEEECTTS
T ss_pred             eEeeecCCccceeecccccc---------------------------------------cceeeeecccccccccccccc
Confidence            76543 33333333221100                                       001112233344555677777


Q ss_pred             CeeEEEecCCCeEE--EEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCC-CeEEEEEeccCCCCCCCCceEE
Q 016547          182 AQEFCSVGDDSCLI--LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINK  258 (387)
Q Consensus       182 ~~~l~~~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~  258 (387)
                      ...+++...+|...  +.++....   ...............|+| ++..++..+.+ +...+|....      ......
T Consensus       139 ~~~~~~~~~~g~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~------~~~~~~  208 (269)
T d2hqsa1         139 QNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDL------ATGGVQ  208 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEET------TTCCEE
T ss_pred             ccceecccccCCceEeeeeccccc---ceeeeccccccccccccc-ccceeEEEeecCCceeeeEeec------ccccce
Confidence            56667766666544  44554444   333444556677889999 88877776654 4555555443      222223


Q ss_pred             eccccceEEEEEEcCCCCeeEEEecC--CCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEcc
Q 016547          259 FEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  331 (387)
Q Consensus       259 ~~~~~~~i~~~~~~~~~~~ll~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  331 (387)
                      ...+........|+|||+.|+.+...  ...|.++++....                ...+....+.+...+|+|
T Consensus       209 ~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----------------~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         209 VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----------------KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----------------EEECCCSSSEEEEEEECC
T ss_pred             EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----------------EEEEeCCCCcEEeEEeCC
Confidence            33345566778999999987655543  3457888887632                233445566788889998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=1.1e-08  Score=82.92  Aligned_cols=219  Identities=12%  Similarity=0.020  Sum_probs=142.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC
Q 016547           89 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  168 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (387)
                      .+..++++|||+++++...+++|..|+....                                          ...+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~------------------------------------------~~~~~~~   66 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN------------------------------------------QQIHATV   66 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC------------------------------------------EEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC------------------------------------------EEEEEcC
Confidence            4779999999999999998999888875432                                          1223344


Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEE-eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ...+.+++|.++| +++++...++.+..++........... ........+.+++.+ +++++++-+.++.+..+|... 
T Consensus        67 ~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~-  143 (302)
T d2p4oa1          67 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ-  143 (302)
T ss_dssp             SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT-
T ss_pred             CCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccC-
Confidence            5678999999999 788888788888888876554222222 123445678999999 899988888888888887765 


Q ss_pred             CCCCCCCceEEe----------ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          248 TSNGVGSPINKF----------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       248 ~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                           .......          .........+.+.  +.+++++.+..+.|..+++........            ... 
T Consensus       144 -----~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~------------~~~-  203 (302)
T d2p4oa1         144 -----PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGE------------PEI-  203 (302)
T ss_dssp             -----TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCC------------CEE-
T ss_pred             -----CcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccc------------ccc-
Confidence                 2211111          0112235666665  445777888899999998876432210            111 


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      .........+++.++|..++        +...++.|..++...     ....+......-...++++|
T Consensus       204 ~~~~~~pdgia~d~dG~l~v--------a~~~~~~V~~i~p~G-----~~~~~~~~~~~~~~pt~vaf  258 (302)
T d2p4oa1         204 FVEQTNIDDFAFDVEGNLYG--------ATHIYNSVVRIAPDR-----STTIIAQAEQGVIGSTAVAF  258 (302)
T ss_dssp             EEESCCCSSEEEBTTCCEEE--------ECBTTCCEEEECTTC-----CEEEEECGGGTCTTEEEEEE
T ss_pred             ccCCCCCcceEECCCCCEEE--------EEcCCCcEEEECCCC-----CEEEEEecCCCCCCceEEEE
Confidence            11233467899999998555        333447888887662     11123334434445677777

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.14  E-value=2.7e-08  Score=81.06  Aligned_cols=225  Identities=7%  Similarity=0.016  Sum_probs=134.0

Q ss_pred             eEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCC
Q 016547           90 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  169 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (387)
                      +..++|.++|+..++-...++|.-|+.+....                                        ........
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~----------------------------------------~~~~~~~~   81 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEI----------------------------------------KRPFVSHK   81 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCE----------------------------------------EEEEECSS
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeE----------------------------------------EEEEeCCC
Confidence            46899999999777777888888888764321                                        12222334


Q ss_pred             CCeEEEEEccCCCeeEEEecC----CCeEEEEEccCCCCceeEEee--ccCCCeeEEEecCCCCCeEEEeeC------CC
Q 016547          170 DTVEDVTFCPSSAQEFCSVGD----DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSA------DN  237 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~------dg  237 (387)
                      .....+++.++| +++++...    .+.+...+.....  ......  .....++.+++.+ ++++.++...      .+
T Consensus        82 ~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g  157 (319)
T d2dg1a1          82 ANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLG  157 (319)
T ss_dssp             SSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCE
T ss_pred             CCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCce--eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcc
Confidence            567899999998 66665432    2345555555544  222221  1234567899999 8887665432      12


Q ss_pred             eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee
Q 016547          238 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  317 (387)
Q Consensus       238 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  317 (387)
                      .+..++..       +..+..+...-...+.++|+|+++.|+++-+..+.|..|++.........       ........
T Consensus       158 ~v~~~~~d-------g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~-------~~~~~~~~  223 (319)
T d2dg1a1         158 GVYYVSPD-------FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP-------FGATIPYY  223 (319)
T ss_dssp             EEEEECTT-------SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE-------EEEEEEEE
T ss_pred             eeEEEecc-------cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc-------ccceeeec
Confidence            34444433       33333333223346789999999988888888999999998753321110       00011111


Q ss_pred             ccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhh------ccCceEEEeeecC
Q 016547          318 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE------KFKAHVISCTSKP  387 (387)
Q Consensus       318 ~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~------~~~~~v~~~~f~P  387 (387)
                      .......-.|++.++|+..++ .       ..++.|.+|+-.       ++.+.++.      ++...+++++|.|
T Consensus       224 ~~~~~~PdGl~vD~~G~l~Va-~-------~~~g~V~~~~p~-------G~~l~~i~~P~~~~~~~~~~~~~~~~~  284 (319)
T d2dg1a1         224 FTGHEGPDSCCIDSDDNLYVA-M-------YGQGRVLVFNKR-------GYPIGQILIPGRDEGHMLRSTHPQFIP  284 (319)
T ss_dssp             CCSSSEEEEEEEBTTCCEEEE-E-------ETTTEEEEECTT-------SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             cCCccceeeeeEcCCCCEEEE-E-------cCCCEEEEECCC-------CcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence            122234578999999985553 2       233899999955       55555443      3334566777754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.03  E-value=7.8e-08  Score=77.94  Aligned_cols=121  Identities=13%  Similarity=0.234  Sum_probs=89.6

Q ss_pred             CeEEEEEccCCC----eeEEEecCCCeEEEEEccCCCCcee----EEeec-cCCCeeEEEecCCCCCeEEEeeCCCeEEE
Q 016547          171 TVEDVTFCPSSA----QEFCSVGDDSCLILWDARVGTSPVI----KVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRM  241 (387)
Q Consensus       171 ~v~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~~  241 (387)
                      .-+.++|+|+++    .++++-+..+.|..||+........    ..+.. .......|++++ ++++.++....+.|..
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEE
Confidence            346889998763    3566667889999999865431111    11111 223456899999 8998888888899999


Q ss_pred             EEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          242 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       242 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      ||.+.      +..+..+.......++++|.|+++.|+++.+.++.|..+++...++
T Consensus       252 ~dp~~------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         252 FGPDG------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             ECTTC------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EeCCC------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            99876      6666667666677899999999988888999999999999887654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=1e-07  Score=75.10  Aligned_cols=196  Identities=10%  Similarity=0.040  Sum_probs=126.5

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      ....+++.+ +++++++....+.+++++-.+.            .......+..  ....+++.++++++++-..+..+.
T Consensus        58 ~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~------------~~~~~~~~~~--~p~~iavd~~g~i~v~d~~~~~~~  122 (260)
T d1rwia_          58 QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNN------------QTVLPFDGLN--YPEGLAVDTQGAVYVADRGNNRVV  122 (260)
T ss_dssp             SCCCEEECT-TCCEEEEETTTEEEEECTTCSC------------CEECCCCSCC--SEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CceEEEEcC-CCCEEEeeeeeceeeeeeeccc------------eeeeeeeeee--ecccccccccceeEeecccccccc
Confidence            356788888 7788888777777776654444            1111122222  357999999998877766666677


Q ss_pred             EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      .++........                                        ..........++++.+++ +++++...++
T Consensus       123 ~~~~~~~~~~~----------------------------------------~~~~~~~~p~~i~~~~~g-~~~v~~~~~~  161 (260)
T d1rwia_         123 KLAAGSKTQTV----------------------------------------LPFTGLNDPDGVAVDNSG-NVYVTDTDNN  161 (260)
T ss_dssp             EECTTCSSCEE----------------------------------------CCCCSCCSCCEEEECTTC-CEEEEEGGGT
T ss_pred             ccccccceeee----------------------------------------eeecccCCcceeeecCCC-CEeeeccccc
Confidence            76654321110                                        000112334678999988 7788888888


Q ss_pred             eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEE
Q 016547          193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQW  271 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~  271 (387)
                      .|..+|.+...  ..............|++++ +++++++....+.|..++...       .....+. ..-.....|++
T Consensus       162 ~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~-------~~~~~~~~~~~~~P~~i~~  231 (260)
T d1rwia_         162 RVVKLEAESNN--QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS-------TTSTVLPFTGLNTPLAVAV  231 (260)
T ss_dssp             EEEEECTTTCC--EEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTC-------SCCEECCCCSCCCEEEEEE
T ss_pred             cccccccccce--eeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCC-------CeEEEEccCCCCCeEEEEE
Confidence            99999987654  2222224456678999999 888888888888888887653       2222222 12235679999


Q ss_pred             cCCCCeeEEEecCCCeEEEEeCCC
Q 016547          272 SPDKSSVFGSSAEDGLLNIWDYEK  295 (387)
Q Consensus       272 ~~~~~~ll~s~~~d~~i~vwd~~~  295 (387)
                      +++|. |+++-..+++|+.++...
T Consensus       232 d~~g~-l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         232 DSDRT-VYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CTTCC-EEEEEGGGTEEEEECCCG
T ss_pred             eCCCC-EEEEECCCCEEEEEeCCC
Confidence            99987 676767777777666543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.93  E-value=7.6e-07  Score=70.78  Aligned_cols=219  Identities=12%  Similarity=0.144  Sum_probs=134.2

Q ss_pred             EEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCC
Q 016547           91 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  170 (387)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (387)
                      ..++++++|+.+++-..++.|++||.+.. ....+...                                  ..-.+...
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~----------------------------------~~~~~~~~   70 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGEC----------------------------------GKRDSQLL   70 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCB----------------------------------SSSTTCBS
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEeccc----------------------------------CCCccccc
Confidence            68999999998888777889999986532 11111000                                  00001112


Q ss_pred             CeEEEEEccCCCeeEEE-ecCCCeEEEEEccCCCCceeEEe-eccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCC
Q 016547          171 TVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  248 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  248 (387)
                      ....+++.++....+++ .+.++.|..++... .  ....+ .........+++.+ +++++++....+.+.+++..   
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-~--~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~---  143 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-Q--FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN---  143 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTS-C--EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT---
T ss_pred             ccccccccccccccceeccCCccccccccccc-c--ceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC---
Confidence            33455555554344443 44556777777543 3  23333 23445678899998 88888887777888888755   


Q ss_pred             CCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeee--ccCCCCe
Q 016547          249 SNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKV  324 (387)
Q Consensus       249 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v  324 (387)
                          ++.+..+  ..+......+++.+++. ++++....+.|++||....                .+..+  .+.....
T Consensus       144 ----g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~----------------~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         144 ----GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ----------------YLRQIGGEGITNYP  202 (279)
T ss_dssp             ----SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC----------------EEEEESCTTTSCSE
T ss_pred             ----Cceeecccccccccccceeeecccee-EEeeeccccceeeeecCCc----------------eeeeecccccccCC
Confidence                5666655  33456678899999887 6778888899999997642                12222  2345567


Q ss_pred             eEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccC--ceEEEeeec
Q 016547          325 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK--AHVISCTSK  386 (387)
Q Consensus       325 ~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~v~~~~f~  386 (387)
                      .++++.++|+.+++-.       ..++.|.+|+..       ++.+.++....  ...+.|++.
T Consensus       203 ~giavD~~G~i~Vad~-------~~~~~v~~f~~~-------G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         203 IGVGINSNGEILIADN-------HNNFNLTIFTQD-------GQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             EEEEECTTCCEEEEEC-------SSSCEEEEECTT-------SCEEEEEEESSCCSCEEEEEEE
T ss_pred             cccccccCCeEEEEEC-------CCCcEEEEECCC-------CCEEEEEeCCCCCCCEeEEEEe
Confidence            8999999998555322       223679998855       55555443221  234455543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.2e-07  Score=75.96  Aligned_cols=300  Identities=13%  Similarity=0.061  Sum_probs=143.8

Q ss_pred             CCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCC--------CceEEEEECCCCCEE
Q 016547           31 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--------NAEFALAMCPTEPYV  102 (387)
Q Consensus        31 ~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~~v~~~~~~~~~~~l  102 (387)
                      .+.+....|+| +|+.||-.. ++.|.+.+..++.........   .....+.|..+        +.-.++.|||||++|
T Consensus       113 ~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g---~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~i  187 (465)
T d1xfda1         113 NAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTG---KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL  187 (465)
T ss_dssp             SCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCC---BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred             ccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEeccc---CcceeeccccchhhhhhhccccceEEECCCCCeE
Confidence            34456688999 777777654 567888888766322111110   00111222111        012478899999999


Q ss_pred             EEecC-CCeEEEEEcCCCcCccccCCCccc--CCCC---CCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEE
Q 016547          103 LSGGK-DKSVVLWSIQDHITSSATDPATAK--SAGS---SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  176 (387)
Q Consensus       103 ~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  176 (387)
                      |.... +..|..+.+...............  .++.   ...+..............      .+.........-+..+.
T Consensus       188 af~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~------~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM------MPPDDPRMREYYITMVK  261 (465)
T ss_dssp             EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC------CCCCCGGGSSEEEEEEE
T ss_pred             EEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEE------eccCcCccccceeeeeE
Confidence            98653 445666655322111000000000  0000   000111111000000000      00011112223467889


Q ss_pred             EccCCCeeEEEe-cC---CCeEEEEEccCCCCceeEEeeccCCCe----eEEEecCCCCCeEE---EeeCCC--eEEEEE
Q 016547          177 FCPSSAQEFCSV-GD---DSCLILWDARVGTSPVIKVEKAHDADL----HCVDWNPLDDNLIL---TGSADN--SVRMFD  243 (387)
Q Consensus       177 ~~~~~~~~l~~~-~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~l~---~~~~dg--~i~~~d  243 (387)
                      |+|++ .+++.. ..   ...+.++|..+++...+... .....|    ....|+| ++..++   ....+|  .+..++
T Consensus       262 W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~  338 (465)
T d1xfda1         262 WATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHIT  338 (465)
T ss_dssp             ESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEE
T ss_pred             EcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEEE-cCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEE
Confidence            99998 555543 22   23588889988874322221 122222    3457888 776432   222333  444444


Q ss_pred             eccCCCCCCCCceEEeccccceEEEE-EEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCceeeeeeccC
Q 016547          244 RRNLTSNGVGSPINKFEGHSAAVLCV-QWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  320 (387)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (387)
                      +........+..+..+....-.|..+ .|+++++.++.++..++  .-++|.+.-.+....          +++......
T Consensus       339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~----------~~lt~~~~~  408 (465)
T d1xfda1         339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR----------QCLSCDLVE  408 (465)
T ss_dssp             EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC----------BCSSTTSSS
T ss_pred             eccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc----------eeeccccCC
Confidence            43221111134444444334456554 68888887766665442  344555543221100          111111123


Q ss_pred             CCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          321 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       321 ~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .....++.|||++++++.+++.     -.--.+.+++..
T Consensus       409 ~~~~~~~~~S~~~~y~v~~~s~-----~~~P~~~~~~~~  442 (465)
T d1xfda1         409 NCTYFSASFSHSMDFFLLKCEG-----PGVPMVTVHNTT  442 (465)
T ss_dssp             SCCCCEEEECTTSSEEEEECCS-----SSSCCEEEEETT
T ss_pred             CCCEEEEEECCCCCEEEEEeec-----CCCCeEEEEECC
Confidence            4467799999999999988853     233456777765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=4.6e-06  Score=66.57  Aligned_cols=184  Identities=13%  Similarity=0.085  Sum_probs=118.2

Q ss_pred             CCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec--cCCCeeEEEecCCCCCeEEEeeCC----CeEEEE
Q 016547          169 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD----NSVRMF  242 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~d----g~i~~~  242 (387)
                      ...+.++++.+++ .++++ +.+ .+.++|..+++...+.....  ....++.+.+.| ++++.++...+    +.-.+|
T Consensus        58 ~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEe
Confidence            3467889999888 65554 444 58899998887322211111  122478889999 88876665432    345566


Q ss_pred             EeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCC
Q 016547          243 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  322 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (387)
                      .+..      ++....... -...+.++|+++++.++++-+..+.|..|++........       ..........+..+
T Consensus       134 ~~~~------g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~-------~~~~~~~~~~~~~g  199 (295)
T d2ghsa1         134 HVAK------GKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT-------GKAEVFIDSTGIKG  199 (295)
T ss_dssp             EEET------TEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS-------SCCEEEEECTTSSS
T ss_pred             eecC------CcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccc-------cceEEEeccCcccc
Confidence            6665      443333332 234578999999998888888899999998864221111       01122333444556


Q ss_pred             CeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhhhccCceEEEeee
Q 016547          323 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  385 (387)
Q Consensus       323 ~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~f  385 (387)
                      ....+++..+|...++..        ..+.|..||-.       ++.+.++.--...+++++|
T Consensus       200 ~pdG~~vD~~GnlWva~~--------~~g~V~~~dp~-------G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARW--------GEGAVDRYDTD-------GNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             EEEEEEECTTSCEEEEEE--------TTTEEEEECTT-------CCEEEEEECSCSBEEEEEE
T ss_pred             cccceEEcCCCCEEeeee--------CCCceEEecCC-------CcEeeEecCCCCceEEEEE
Confidence            788999999998666432        23789989855       7777777655566888887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.80  E-value=1.6e-05  Score=63.32  Aligned_cols=231  Identities=10%  Similarity=0.044  Sum_probs=142.1

Q ss_pred             EEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEE
Q 016547           36 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS  115 (387)
Q Consensus        36 ~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd  115 (387)
                      +-.|.+.++.+..+--..+.|.-||.++++             ...+.. .. .+.++++.++|.+++++ .+ .+..+|
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~-------------~~~~~~-~~-~~~~i~~~~dg~l~va~-~~-gl~~~d   84 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR-------------KTVHAL-PF-MGSALAKISDSKQLIAS-DD-GLFLRD   84 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE-------------EEEEEC-SS-CEEEEEEEETTEEEEEE-TT-EEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe-------------EEEEEC-CC-CcEEEEEecCCCEEEEE-eC-ccEEee
Confidence            456777677777776677899999988872             122222 22 46789999898777764 34 588889


Q ss_pred             cCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEec----CC
Q 016547          116 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----DD  191 (387)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d  191 (387)
                      ..++.........                                    -......++.+.+.|+| ++.++..    ..
T Consensus        85 ~~tg~~~~l~~~~------------------------------------~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~  127 (295)
T d2ghsa1          85 TATGVLTLHAELE------------------------------------SDLPGNRSNDGRMHPSG-ALWIGTMGRKAET  127 (295)
T ss_dssp             TTTCCEEEEECSS------------------------------------TTCTTEEEEEEEECTTS-CEEEEEEETTCCT
T ss_pred             cccceeeEEeeee------------------------------------cCCCcccceeeEECCCC-CEEEEeccccccc
Confidence            8765332111000                                    00112357888999998 5555432    22


Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCe-EEEeeCCCeEEEEEeccCCCCCCCCc--eEEeccccceEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVGSP--INKFEGHSAAVLC  268 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~i~~  268 (387)
                      +.-.+|.+..++  ..... ..-...+.++|++ +++. +++-+..+.|..|++.........+.  ...+....+....
T Consensus       128 ~~g~l~~~~~g~--~~~~~-~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG  203 (295)
T d2ghsa1         128 GAGSIYHVAKGK--VTKLF-ADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  203 (295)
T ss_dssp             TCEEEEEEETTE--EEEEE-EEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             cceeEeeecCCc--EEEEe-eccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence            345666666654  22222 2334567899999 6664 45556678899998754221111111  1223334566889


Q ss_pred             EEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEc-cCCCeEEEEec
Q 016547          269 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVS  341 (387)
Q Consensus       269 ~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~s~s  341 (387)
                      +++..+|. |.++.-..+.|..||-..                +.+..+.-....+++++|- ++.+.|+++++
T Consensus       204 ~~vD~~Gn-lWva~~~~g~V~~~dp~G----------------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         204 SVCDAEGH-IWNARWGEGAVDRYDTDG----------------NHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEECTTSC-EEEEEETTTEEEEECTTC----------------CEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             eEEcCCCC-EEeeeeCCCceEEecCCC----------------cEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            99999998 455655678899999653                2233333334568999996 77788888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.3e-06  Score=73.17  Aligned_cols=151  Identities=14%  Similarity=0.199  Sum_probs=88.8

Q ss_pred             EecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccC--CCceEEEEECCCCCEEEEec---------
Q 016547           38 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAMCPTEPYVLSGG---------  106 (387)
Q Consensus        38 ~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~v~~~~~~~~~~~l~s~~---------  106 (387)
                      .|.+ ++.++.. ..+|.|.+||+.+++            ....+....  .-.+....||||+++++...         
T Consensus        23 ~W~~-~~~~~~~-~~~g~i~~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          23 KWIS-DTEFIYR-EQKGTVRLWNVETNT------------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (465)
T ss_dssp             CBSS-SSCBCCC-CSSSCEEEBCGGGCC------------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             EEeC-CCcEEEE-eCCCcEEEEECCCCC------------EEEEEcCccccccccceeEECCCCCeEEEEEcccceeEee
Confidence            5777 5565543 567889999999883            222222221  11356788999999987653         


Q ss_pred             CCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEE
Q 016547          107 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  186 (387)
Q Consensus       107 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  186 (387)
                      ..+.+.++|+.++.....                                      .........+....|+|+|.. ++
T Consensus        89 ~~~~~~i~d~~~~~~~~l--------------------------------------~~~~~~~~~l~~~~wSPDG~~-ia  129 (465)
T d1xfda1          89 YTGYYVLSKIPHGDPQSL--------------------------------------DPPEVSNAKLQYAGWGPKGQQ-LI  129 (465)
T ss_dssp             CCSEEEEEESSSCCCEEC--------------------------------------CCTTCCSCCCSBCCBCSSTTC-EE
T ss_pred             ccccEEEEEccCCceeec--------------------------------------cCccCCccccceeeeccCCce-EE
Confidence            356788888876532111                                      111122334556789999954 44


Q ss_pred             EecCCCeEEEEEccCCCCceeEEeeccCCC-----------------eeEEEecCCCCCeEEEeeC-CCeEEEEEe
Q 016547          187 SVGDDSCLILWDARVGTSPVIKVEKAHDAD-----------------LHCVDWNPLDDNLILTGSA-DNSVRMFDR  244 (387)
Q Consensus       187 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~~l~~~~~-dg~i~~~d~  244 (387)
                      -. .++.|.+.+...+.... ....+....                 -..+.|+| ++++||.... +..+..+.+
T Consensus       130 fv-~~~nl~~~~~~~~~~~~-lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         130 FI-FENNIYYCAHVGKQAIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EE-ETTEEEEESSSSSCCEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEE
T ss_pred             EE-ecceEEEEecCCCceEE-EecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeec
Confidence            43 35678888877655211 111111111                 24678999 9999988753 344444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.56  E-value=5.8e-06  Score=65.43  Aligned_cols=64  Identities=6%  Similarity=0.029  Sum_probs=40.8

Q ss_pred             cCCC--CcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec----CCC--eE
Q 016547           40 LPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----KDK--SV  111 (387)
Q Consensus        40 ~~~~--~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~----~d~--~i  111 (387)
                      +| +  |+.+|-.+ +|.|.+.|+.++            +. ..+..+.+ .+....|||||++|+...    .+.  .|
T Consensus         7 sP-di~G~~v~f~~-~~dl~~~d~~~g------------~~-~~Lt~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           7 NP-DIHGDRIIFVC-CDDLWEHDLKSG------------ST-RKIVSNLG-VINNARFFPDGRKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             EE-EEETTEEEEEE-TTEEEEEETTTC------------CE-EEEECSSS-EEEEEEECTTSSEEEEEEEESTTCCEEEE
T ss_pred             CC-CCCCCEEEEEe-CCcEEEEECCCC------------CE-EEEecCCC-cccCEEECCCCCEEEEEEeeCCCCCceEE
Confidence            56 5  66666543 456888899887            33 34555554 578899999999988543    222  35


Q ss_pred             EEEEcCCC
Q 016547          112 VLWSIQDH  119 (387)
Q Consensus       112 ~vwd~~~~  119 (387)
                      .+.+...+
T Consensus        71 ~~~~~~~g   78 (281)
T d1k32a2          71 YFYNGENG   78 (281)
T ss_dssp             EEEETTTT
T ss_pred             EEEEecCC
Confidence            55555543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.0008  Score=52.10  Aligned_cols=230  Identities=6%  Similarity=-0.012  Sum_probs=135.1

Q ss_pred             ceeeeecceeeccccc--cCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCe
Q 016547            2 FLWTFAMLLFQFNEEA--RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD   79 (387)
Q Consensus         2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~   79 (387)
                      |+|.....+..+.-+.  ............+...+.+|+|.+.++.+..+-..++.|+..+++..            ...
T Consensus         4 Ll~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~------------~~~   71 (263)
T d1npea_           4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG------------EPT   71 (263)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC------------CCE
T ss_pred             EEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC------------CcE
Confidence            5666666665444322  11112222233445568889999866666666667788988888766            233


Q ss_pred             EEEeccCCCceEEEEECCCCCEEE-EecCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCC
Q 016547           80 LILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  158 (387)
Q Consensus        80 ~~~~~h~~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (387)
                      ..+..... .+..+++..-+..|. +-...+.|.+.+++.....                                    
T Consensus        72 ~v~~~~~~-~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~------------------------------------  114 (263)
T d1npea_          72 TIIRQDLG-SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR------------------------------------  114 (263)
T ss_dssp             EEECTTCC-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------------------------------
T ss_pred             EEEEeccc-cccEEEEeccCCeEEEeccCCCEEEEEecCCceEE------------------------------------
Confidence            33333222 357888877666665 4445678999888643211                                    


Q ss_pred             CCCceeecCCCCCeEEEEEccCCCeeEEEecCCCe--EEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeE-EEeeC
Q 016547          159 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSA  235 (387)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~  235 (387)
                          ............+++.|..+.++.+-...+.  |.--++....  ........-.....|++++ ..+.| .+-..
T Consensus       115 ----~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--~~~i~~~~~~~P~glaiD~-~~~~lYw~d~~  187 (263)
T d1npea_         115 ----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDA-FSSQLCWVDAG  187 (263)
T ss_dssp             ----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEET-TTTEEEEEETT
T ss_pred             ----EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--ceeeeeecccccceEEEee-cCcEEEEEeCC
Confidence                1122223567899999887566655433333  4444554443  2222223345678999998 55555 44456


Q ss_pred             CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      .+.|...|+..      ......+.+... ..+|++.  +.+|+.+-...+.|...|...+
T Consensus       188 ~~~I~~~~~~g------~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         188 THRAECLNPAQ------PGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTEEEEEETTE------EEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEECCC------CCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            78898888874      332223333333 3577775  4457778777888888888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.0026  Score=49.27  Aligned_cols=224  Identities=4%  Similarity=-0.056  Sum_probs=132.2

Q ss_pred             cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEec-CCCeEEEEEcCCCcCccccCCCcccCC
Q 016547           55 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSA  133 (387)
Q Consensus        55 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~  133 (387)
                      .|+-.++++.            .....+.+-.  .+.+++|.+..+.|.-.. .++.|.--+++.....           
T Consensus        11 ~I~~~~l~~~------------~~~~~~~~~~--~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~-----------   65 (266)
T d1ijqa1          11 EVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------   65 (266)
T ss_dssp             SEEEEETTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------
T ss_pred             eEEEEECCCC------------cceeeeCCCC--ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC-----------
Confidence            5887888765            2233333333  356899998877776553 4566666555421100           


Q ss_pred             CCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeecc
Q 016547          134 GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH  213 (387)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  213 (387)
                                               .............+.++++.+.++++..+-...+.|.+.++....  ........
T Consensus        66 -------------------------~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~--~~~~~~~~  118 (266)
T d1ijqa1          66 -------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREN  118 (266)
T ss_dssp             ---------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEECT
T ss_pred             -------------------------cceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce--EEEEEcCC
Confidence                                     001112222334566788877665777777788899999988665  33334445


Q ss_pred             CCCeeEEEecCCCCCeEEEee-CCCeEEEEEeccCCCCCCCCceEEec-cccceEEEEEEcCCCCeeEEEecCCCeEEEE
Q 016547          214 DADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  291 (387)
Q Consensus       214 ~~~i~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vw  291 (387)
                      ......++++|..+.++.+-. ..+.|.-.++.       +.....+- ..-...+++++.+.+..|+.+-...+.|...
T Consensus       119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-------Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~  191 (266)
T d1ijqa1         119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (266)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEEcccCeEEEeccCCCcceeEeccC-------CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEE
Confidence            567899999993444444432 23455555554       33333332 2234578999999888888887888899999


Q ss_pred             eCCCCCceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          292 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ++......             .+...........++++.  +.++..+-.       .++.|...+..
T Consensus       192 ~~dG~~~~-------------~~~~~~~~~~~p~~lav~--~~~ly~td~-------~~~~I~~~~~~  237 (266)
T d1ijqa1         192 DVNGGNRK-------------TILEDEKRLAHPFSLAVF--EDKVFWTDI-------INEAIFSANRL  237 (266)
T ss_dssp             ETTSCSCE-------------EEEECTTTTSSEEEEEEE--TTEEEEEET-------TTTEEEEEETT
T ss_pred             ECCCCCEE-------------EEEeCCCcccccEEEEEE--CCEEEEEEC-------CCCeEEEEECC
Confidence            98763221             222222233345677766  456776443       33778777766

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.91  E-value=0.0025  Score=51.79  Aligned_cols=147  Identities=11%  Similarity=0.064  Sum_probs=83.5

Q ss_pred             eEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCC---------------eEEEEEe-------------
Q 016547          193 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---------------SVRMFDR-------------  244 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---------------~i~~~d~-------------  244 (387)
                      .+...|..+.+  ...... -......+.+++ +++++++.+.+.               .+.+++.             
T Consensus       174 ~~t~ID~~tm~--V~~QV~-V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         174 VFTAVDADKWE--VAWQVL-VSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEEETTTTE--EEEEEE-ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEEEEecCCce--EEEEee-eCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence            35677877766  222222 234567889999 888888876431               1333333             


Q ss_pred             ----------ccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceee
Q 016547          245 ----------RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  314 (387)
Q Consensus       245 ----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  314 (387)
                                +....   ...+..+. -......+.++|||+++++++..+..+.|+|+++.........    .+...+
T Consensus       250 eingV~VVD~~~~~~---~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~----~~~~~~  321 (459)
T d1fwxa2         250 ELNGVKVVDGRKEAS---SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA----DPRSAV  321 (459)
T ss_dssp             EETTEEEEECSGG-----CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----GGGGE
T ss_pred             EeCCceeecccccCC---cceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC----CccccE
Confidence                      22100   11122222 1223457899999999999999999999999986433221110    111122


Q ss_pred             eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          315 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       315 ~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      .......-...--+|...|. ...       |---|..|.-|++.
T Consensus       322 ~~e~elglgPLht~fd~~g~-ayt-------slfids~v~kw~~~  358 (459)
T d1fwxa2         322 VAEPELGLGPLHTAFDGRGN-AYT-------SLFLDSQVVKWNIE  358 (459)
T ss_dssp             EECCBCCSCEEEEEECTTSE-EEE-------EETTTTEEEEEEHH
T ss_pred             EeecccCcCccccccCCCce-EEE-------EeeccceEEEEecc
Confidence            22222233455667887663 333       34455899999986

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=0.005  Score=47.44  Aligned_cols=207  Identities=8%  Similarity=-0.032  Sum_probs=125.0

Q ss_pred             ceEEEEECCCCCEEEEe-cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecC
Q 016547           89 AEFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  167 (387)
Q Consensus        89 ~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (387)
                      .+..++|.+.++.|..+ ..++.|...+++.....                                        ..+..
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~----------------------------------------~v~~~   76 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT----------------------------------------TIIRQ   76 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE----------------------------------------EEECT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE----------------------------------------EEEEe
Confidence            46689998877776654 45677888777643211                                        12222


Q ss_pred             CCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccC
Q 016547          168 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  247 (387)
Q Consensus       168 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  247 (387)
                      ....+.++++..-++++..+-...+.|.+.++.....  ..........+..++++|..+.++.+-...+..+|+.....
T Consensus        77 ~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE--EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            2345788888766656777777888999999886652  22233334678899999944444444333334445544332


Q ss_pred             CCCCCCCceEEe-ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeeccCCCCeeE
Q 016547          248 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  326 (387)
Q Consensus       248 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  326 (387)
                           +.....+ ...-....++++.+.++.|+.+-...+.|...|+......             .+  ..+. ....+
T Consensus       155 -----G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-------------~v--~~~~-~~P~~  213 (263)
T d1npea_         155 -----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-------------KV--LEGL-QYPFA  213 (263)
T ss_dssp             -----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-------------EE--EECC-CSEEE
T ss_pred             -----CCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-------------EE--ECCC-CCcEE
Confidence                 2222222 2223456899999888878777777889999998763221             11  1222 23457


Q ss_pred             EEEccCCCeEEEEecCCCCCCCCCceEEEEecCCCcccccchhhhhh
Q 016547          327 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  373 (387)
Q Consensus       327 ~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~~~~~~~~~~~~~~  373 (387)
                      |++.  +.++..+-.       ..+.|...|..      +++.+..+
T Consensus       214 lav~--~~~lYwtd~-------~~~~I~~~~~~------~g~~~~~~  245 (263)
T d1npea_         214 VTSY--GKNLYYTDW-------KTNSVIAMDLA------ISKEMDTF  245 (263)
T ss_dssp             EEEE--TTEEEEEET-------TTTEEEEEETT------TTEEEEEE
T ss_pred             EEEE--CCEEEEEEC-------CCCEEEEEECC------CCccceEE
Confidence            7775  566766433       33788888887      55555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.64  E-value=0.011  Score=48.44  Aligned_cols=73  Identities=15%  Similarity=0.047  Sum_probs=46.7

Q ss_pred             EEEEecCCCCcEEEEecCC-CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC-----
Q 016547           35 NRIRELPQNTKIVATHTDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-----  108 (387)
Q Consensus        35 ~~i~~~~~~~~~l~t~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d-----  108 (387)
                      ...++.+ ++.+++.|+.+ ..+.+||..+..-..          ...+....  .-...+..+||+.++.++.+     
T Consensus        79 ~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~----------~~~~~~~r--~~~~~~~~~dG~v~v~GG~~~~~~~  145 (387)
T d1k3ia3          79 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIP----------GPDMQVAR--GYQSSATMSDGRVFTIGGSWSGGVF  145 (387)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEE----------CCCCSSCC--SSCEEEECTTSCEEEECCCCCSSSC
T ss_pred             eEEEEec-CCcEEEeecCCCcceeEecCccCcccc----------cccccccc--cccceeeecCCceeeeccccccccc
Confidence            3456677 88899888755 589999988762111          11111111  12356777899998888753     


Q ss_pred             -CeEEEEEcCCCc
Q 016547          109 -KSVVLWSIQDHI  120 (387)
Q Consensus       109 -~~i~vwd~~~~~  120 (387)
                       ..+.+||..+..
T Consensus       146 ~~~v~~yd~~~~~  158 (387)
T d1k3ia3         146 EKNGEVYSPSSKT  158 (387)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             cceeeeecCCCCc
Confidence             368899987653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.62  E-value=0.0022  Score=52.11  Aligned_cols=171  Identities=9%  Similarity=0.036  Sum_probs=95.6

Q ss_pred             EEEEcc---CCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC-CCCeEEEeeCCC------------
Q 016547          174 DVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADN------------  237 (387)
Q Consensus       174 ~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg------------  237 (387)
                      .+.+..   ||..+++.-..+++|.+-|+++.+...+... .....+..+...+. +-.+++.++.+.            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455543   6755566667899999999998883222233 34456676665431 455666666532            


Q ss_pred             ------eEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCC--------------eEEEEeCCCCC
Q 016547          238 ------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVG  297 (387)
Q Consensus       238 ------~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~--------------~i~vwd~~~~~  297 (387)
                            .+..+|..+      .+...++. -......++++++|+++++++-...              .+.+++.....
T Consensus       168 ~~~y~~~~t~ID~~t------m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         168 VANYVNVFTAVDADK------WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             GG-EEEEEEEEETTT------TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             hhhcceEEEEEecCC------ceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence                  255677766      44444443 2344668999999999887663211              23344432211


Q ss_pred             ceeccCCCCC----------C-CCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          298 KKVEQGPRTT----------N-YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       298 ~~~~~~~~~~----------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..........          . .....+...... .....+..+|||+++++       +|..+.++.|+|+..
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~V-------aGKLs~tVSViD~~K  306 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCV-------AGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEE-------ECTTSSBEEEEEGGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEE-------eCCcCCcEEEEEehh
Confidence            1000000000          0 000111112211 23567899999999998       455569999999973

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.40  E-value=0.023  Score=46.37  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=45.7

Q ss_pred             cCCCCcEEEEecCCC-----------cEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCC
Q 016547           40 LPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  108 (387)
Q Consensus        40 ~~~~~~~l~t~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d  108 (387)
                      .+.++++++.|+.+.           .+.+||..++.-          .................++.+++++++.|+.+
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----------~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGND   96 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----------CCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcE----------eecCCCCCCcccceeEEEEecCCcEEEeecCC
Confidence            445888888887531           377899988721          22222222111123467888999999988755


Q ss_pred             -CeEEEEEcCCCc
Q 016547          109 -KSVVLWSIQDHI  120 (387)
Q Consensus       109 -~~i~vwd~~~~~  120 (387)
                       ..+.+||..+..
T Consensus        97 ~~~~~~yd~~~~~  109 (387)
T d1k3ia3          97 AKKTSLYDSSSDS  109 (387)
T ss_dssp             TTCEEEEEGGGTE
T ss_pred             CcceeEecCccCc
Confidence             589999987653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.33  E-value=0.02  Score=44.12  Aligned_cols=73  Identities=16%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             eeecCCCcEEEEEecCCCCcEEEEec-CC-----CcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCC
Q 016547           26 KTIIHPGEVNRIRELPQNTKIVATHT-DS-----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE   99 (387)
Q Consensus        26 ~~~~h~~~v~~i~~~~~~~~~l~t~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~   99 (387)
                      ++..+.+.+...+|+| +|+.||-.. .+     +.|.+.+..+++...-.      ........... ......|+|+|
T Consensus        35 ~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt------~~~~~~~~~~~-~~~~~~~spdg  106 (281)
T d1k32a2          35 KIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT------YFSGKSTGRRM-FTDVAGFDPDG  106 (281)
T ss_dssp             EEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC------CCCEEEETTEE-CSEEEEECTTC
T ss_pred             EEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEee------ecCCCccCccc-cccccccCCCC
Confidence            4456788899999999 777777442 22     23666677666321100      00000111111 24578999999


Q ss_pred             CEEEEec
Q 016547          100 PYVLSGG  106 (387)
Q Consensus       100 ~~l~s~~  106 (387)
                      +.|+...
T Consensus       107 ~~l~~~~  113 (281)
T d1k32a2         107 NLIISTD  113 (281)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEE
Confidence            9888643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.02  Score=43.99  Aligned_cols=231  Identities=9%  Similarity=0.002  Sum_probs=129.6

Q ss_pred             ceeeeecceeeccccccCcceeeeeeecCCCcEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEE
Q 016547            2 FLWTFAMLLFQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI   81 (387)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~   81 (387)
                      |+|.....+..++.....  .  .........+.+++|.+..+.+..+-..++.|.--+++.....        ......
T Consensus         4 Ll~s~~~~I~~~~l~~~~--~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~--------~~~~~~   71 (266)
T d1ijqa1           4 LFFTNRHEVRKMTLDRSE--Y--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTV   71 (266)
T ss_dssp             EEEECBSSEEEEETTSCC--C--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEE
T ss_pred             EEEECCCeEEEEECCCCc--c--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC--------cceEEE
Confidence            556655556555443221  1  1223456678899999856666666566777776666543110        011122


Q ss_pred             EeccCCCceEEEEECCCCCEEEEe-cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCC
Q 016547           82 LTGHQDNAEFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  160 (387)
Q Consensus        82 ~~~h~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (387)
                      +...-. .+..+++.+.+..|..+ ...++|.+.+++....                                       
T Consensus        72 ~~~~~~-~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~---------------------------------------  111 (266)
T d1ijqa1          72 ISRDIQ-APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------------------------------------  111 (266)
T ss_dssp             ECSSCS-CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE---------------------------------------
T ss_pred             EeCCCC-CcceEEEeeccceEEEEecCCCEEEeEecCCceE---------------------------------------
Confidence            222212 34578887666655543 4567899998864321                                       


Q ss_pred             CceeecCCCCCeEEEEEccCCCeeEEEe-cCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCC-eEEEeeCCCe
Q 016547          161 PRGIYNGHEDTVEDVTFCPSSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNS  238 (387)
Q Consensus       161 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~  238 (387)
                       ...+.........+++.|..+.++.+- +..+.|.-.++....  ........-..++.+++++ .++ +..+-...+.
T Consensus       112 -~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~--~~~l~~~~~~~p~gl~iD~-~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         112 -KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHS  187 (266)
T ss_dssp             -EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEET-TTTEEEEEETTTTE
T ss_pred             -EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc--eecccccccceeeEEEeec-cccEEEEecCCcCE
Confidence             122233345678899988664655553 344567777766544  2222333345678999998 555 4444456788


Q ss_pred             EEEEEeccCCCCCCCCceEEe--ccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          239 VRMFDRRNLTSNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       239 i~~~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      |...|+..      .......  ........++++.  +.+|+.+-..++.|...+...+
T Consensus       188 I~~~~~dG------~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         188 ISSIDVNG------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEETTS------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEECCC------CCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence            88888864      2222222  2222335567776  3457777777788887776653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.83  E-value=0.078  Score=42.20  Aligned_cols=111  Identities=7%  Similarity=-0.000  Sum_probs=66.2

Q ss_pred             ccCCCeeEEEe---cCCCeEEEEEccCCCCceeE--Eee-ccCCCeeEEEecCCCCCeEEEeeC---------------C
Q 016547          178 CPSSAQEFCSV---GDDSCLILWDARVGTSPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSA---------------D  236 (387)
Q Consensus       178 ~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~l~~~~~---------------d  236 (387)
                      .+++...|++.   ....+|.++++.........  ... ......+.+.+.. ++.++++-..               -
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~  185 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGL  185 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcC
Confidence            34553345554   24567888888655432211  111 1224467888887 7887777311               1


Q ss_pred             CeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          237 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       237 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +...+|....      .. .......-...+.|+++|++++++++-+..++|++|++...
T Consensus       186 ~~g~v~~~~~------~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         186 AWSFVTYYSP------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CCEEEEEECS------SC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CceeEEEEcC------Cc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            2233444332      22 22222223457899999999999999999999999999764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.61  E-value=0.094  Score=40.17  Aligned_cols=230  Identities=13%  Similarity=0.189  Sum_probs=135.8

Q ss_pred             CCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCCcCccccCCCcccC
Q 016547           53 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS  132 (387)
Q Consensus        53 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~  132 (387)
                      ..+|.|-|+....           .+. .-....    -+.-.+|..+.|+.-+ ..++.++|+++......        
T Consensus        44 ~~~VvIidl~n~~-----------~~~-Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks--------   98 (327)
T d1utca2          44 QAQVVIIDMNDPS-----------NPI-RRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------   98 (327)
T ss_dssp             EEEEEEEETTSTT-----------SCE-EEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE--------
T ss_pred             CceEEEEECCCCC-----------cce-ecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhce--------
Confidence            4578999988762           111 111111    1445678887777655 56899999987533211        


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeec
Q 016547          133 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  212 (387)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  212 (387)
                                                      + ...++|.--.|-.+.  .|+..+ +..|+-|+++.... ..+.+..
T Consensus        99 --------------------------------~-~~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~-P~k~fdR  141 (327)
T d1utca2          99 --------------------------------H-TMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQ-PVKMFDR  141 (327)
T ss_dssp             --------------------------------E-ECSSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCC-CEEEEEC
T ss_pred             --------------------------------E-EcCCCcEEEEecCCC--EEEEEc-CCceEEEcccCCCC-chhhhhh
Confidence                                            1 123456666776654  444443 45799999965443 3455544


Q ss_pred             cC----CCeeEEEecCCCCCeEEEeeC-------CCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCC--CeeE
Q 016547          213 HD----ADLHCVDWNPLDDNLILTGSA-------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK--SSVF  279 (387)
Q Consensus       213 ~~----~~i~~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~ll  279 (387)
                      |.    ..|..-..++ +.++++..+-       .|.+.+|..+       .+.-+.+++|.+.-..+.+..+.  ..+|
T Consensus       142 ~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  213 (327)
T d1utca2         142 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLF  213 (327)
T ss_dssp             CGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred             cccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEec-------cCcCccccceeeeeEEEEcCCCCCCceEE
Confidence            43    4566667777 7777776542       3678899887       46677788887766555543221  2244


Q ss_pred             EEe---cCCCeEEEEeCCCCCceeccCCCCCCCCceee---eeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceE
Q 016547          280 GSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF---FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL  353 (387)
Q Consensus       280 ~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i  353 (387)
                      +-+   ...++++|-++........      ..+.+..   +......+-..+|..++....+.+....        |.|
T Consensus       214 ~fa~r~~~~~kLhIiEig~~~~g~~------~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~--------G~i  279 (327)
T d1utca2         214 CFAVRGQAGGKLHIIEVGTPPTGNQ------PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY--------GYI  279 (327)
T ss_dssp             EEEEEETTEEEEEEEECSCCCTTCC------CCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETT--------SEE
T ss_pred             EEEECCCCCcEEEEEEcCCCccCCC------CCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecC--------cEE
Confidence            333   2346899999876322100      0111111   1122234566788888887766644333        999


Q ss_pred             EEEecCCCcccccchhhhh
Q 016547          354 QIWRMSDLIYRPQDEVLAE  372 (387)
Q Consensus       354 ~iw~~~~~~~~~~~~~~~~  372 (387)
                      ++||+.      ++.++-.
T Consensus       280 ~lyDle------Tgt~i~~  292 (327)
T d1utca2         280 HLYDLE------TGTCIYM  292 (327)
T ss_dssp             EEEETT------TCCEEEE
T ss_pred             EEEEcc------cccEEEE
Confidence            999999      6665543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.89  E-value=0.36  Score=39.74  Aligned_cols=209  Identities=11%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             eEEEEECCCCCEEEEe-----cCCCeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCcee
Q 016547           90 EFALAMCPTEPYVLSG-----GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  164 (387)
Q Consensus        90 v~~~~~~~~~~~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (387)
                      +...+++|++++++.+     +....+++.|+.++.....                                       .
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~---------------------------------------~  167 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD---------------------------------------V  167 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE---------------------------------------E
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc---------------------------------------c
Confidence            4466889999988732     2334799999987643210                                       1


Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEec---------------CCCeEEEEEccCCCCceeEEeeccC--CCeeEEEecCCCC
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVG---------------DDSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDD  227 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~---------------~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~  227 (387)
                      +.  ......+.|.+++..++.+.-               ....|..|.+.+....-...+....  ..+..+..++ ++
T Consensus       168 i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~  244 (430)
T d1qfma1         168 LE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DG  244 (430)
T ss_dssp             EE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TS
T ss_pred             cc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-Cc
Confidence            11  011246789999855554432               1235788888776533333333332  3455677787 88


Q ss_pred             CeEEEeeC---CCe--EEEEEeccCCCCC--CCCceEEeccccceEEEEEEcCCCCeeEEEec---CCCeEEEEeCCCCC
Q 016547          228 NLILTGSA---DNS--VRMFDRRNLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVG  297 (387)
Q Consensus       228 ~~l~~~~~---dg~--i~~~d~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s~~---~d~~i~vwd~~~~~  297 (387)
                      ++++....   ++.  +.+.|+.......  .......+........-+. +..+. +++...   .++.|...++....
T Consensus       245 ~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~Tn~~a~~~~L~~~~~~~~~  322 (430)
T d1qfma1         245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTV-FTFKTNRHSPNYRLINIDFTDPE  322 (430)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTE-EEEEECTTCTTCEEEEEETTBCC
T ss_pred             ceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCce-eecccCcccccceeEEecCCCCc
Confidence            87765432   333  3444544322110  0111222222223333222 22333 333332   24667777776542


Q ss_pred             ceeccCCCCCCCCceeeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          298 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                      ..            .....+..+...+..-.+...+.+|++....+     .-..|+++++.
T Consensus       323 ~~------------~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~-----~~~~l~v~~~~  367 (430)
T d1qfma1         323 ES------------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-----VKNTLQLHDLA  367 (430)
T ss_dssp             GG------------GCEEEECCCSSCEEEEEEEETTTEEEEEEEET-----TEEEEEEEETT
T ss_pred             cc------------cceEEecccCcceeeeEEEEECCEEEEEEEcC-----CEeEEEEEECC
Confidence            21            11112233444454444555566777665443     22568888887

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.27  Score=37.65  Aligned_cols=196  Identities=12%  Similarity=0.108  Sum_probs=114.0

Q ss_pred             cCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEEEEEcCCC
Q 016547           40 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  119 (387)
Q Consensus        40 ~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~  119 (387)
                      +| ..+.||-=+ ..++.|+|+++.            ..+..+.-...  |.--.|-.+.. |+-.. +..|.-|+++..
T Consensus        71 hP-~~~IiALra-g~~LQiFnletK------------~klks~~~~e~--VvfWkWis~~~-L~lVT-~taVYHW~~~g~  132 (327)
T d1utca2          71 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDD--VTFWKWISLNT-VALVT-DNAVYHWSMEGE  132 (327)
T ss_dssp             CS-SSSEEEEEE-TTEEEEEETTTT------------EEEEEEECSSC--CCEEEESSSSE-EEEEC-SSEEEEEESSSS
T ss_pred             CC-CCcEEEEec-CCeEEEEehhHh------------hhhceEEcCCC--cEEEEecCCCE-EEEEc-CCceEEEcccCC
Confidence            66 677777665 458999999998            55555555553  44556665444 33333 468999999632


Q ss_pred             cCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC----CCCeEEEEEccCCCeeEEEec------
Q 016547          120 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------  189 (387)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------  189 (387)
                      .                                       .+.+.+..|    ...|-.-..+++...++++|=      
T Consensus       133 s---------------------------------------~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  173 (327)
T d1utca2         133 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  173 (327)
T ss_dssp             C---------------------------------------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred             C---------------------------------------CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCc
Confidence            1                                       122333332    234555666666633333321      


Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCC--CCCeEEEeeC---CCeEEEEEeccCCC--CCCCCceEEec--
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSA---DNSVRMFDRRNLTS--NGVGSPINKFE--  260 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~---dg~i~~~d~~~~~~--~~~~~~~~~~~--  260 (387)
                      -.|.+.+|..+...   ...+.+|......+.+.-.  ...+++.+..   .+.+++.++.....  .+..+....+.  
T Consensus       174 i~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp  250 (327)
T d1utca2         174 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  250 (327)
T ss_dssp             EEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             eeEEEEEEEeccCc---CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC
Confidence            23678899887654   5667777666655554320  1123333322   36889998877432  11111112221  


Q ss_pred             --cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCC
Q 016547          261 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       261 --~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                        .-.+-.-++..++.-.. +..-+.-|.|++||+.++
T Consensus       251 pea~~DFPvamqvs~kygi-iyviTK~G~i~lyDleTg  287 (327)
T d1utca2         251 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             TTCTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTC
T ss_pred             ccccCCcEEEEEeeccCCE-EEEEecCcEEEEEEcccc
Confidence              11334557888887764 456778999999999996

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.73  E-value=0.42  Score=39.30  Aligned_cols=248  Identities=10%  Similarity=-0.012  Sum_probs=123.4

Q ss_pred             cEEEEEecCCCCcEEEEe-cCC----CcEEEEeccCCCCcccccCCCCCCCeE-EEeccCCCceEEEEECCCCCEEEEec
Q 016547           33 EVNRIRELPQNTKIVATH-TDS----PDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGG  106 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~~~~~~~l~s~~  106 (387)
                      .+..++++| +++++|-+ +.+    ..+++.|+.+++            .+. .+..-.   ...++|.+|++.|+...
T Consensus       126 ~~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~------------~~~~~i~~~~---~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         126 ALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAK------------ELPDVLERVK---FSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTE------------EEEEEEEEEC---SCCEEECTTSSEEEEEE
T ss_pred             eecceEecC-CCCEEEEEeccccCchheeEEeccCcce------------eccccccccc---ccceEEcCCCCEEEEEE
Confidence            344567788 67776643 333    368999999983            221 122111   13688999999776543


Q ss_pred             CC----------------CeEEEEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCC--
Q 016547          107 KD----------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--  168 (387)
Q Consensus       107 ~d----------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  168 (387)
                      .|                ..|..|.+.+....                                      ....+...  
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~--------------------------------------d~~v~~e~d~  231 (430)
T d1qfma1         190 YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE--------------------------------------DILCAEFPDE  231 (430)
T ss_dssp             CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG--------------------------------------CEEEECCTTC
T ss_pred             eccccCcccccccccCCcceEEEEECCCCccc--------------------------------------cccccccccC
Confidence            22                24666666543211                                      11222222  


Q ss_pred             CCCeEEEEEccCCCeeEEEec--CCCe--EEEEEccCCCCc------eeEEeeccCCCeeEEEecCCCCCeEEEeeC---
Q 016547          169 EDTVEDVTFCPSSAQEFCSVG--DDSC--LILWDARVGTSP------VIKVEKAHDADLHCVDWNPLDDNLILTGSA---  235 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~~--~dg~--i~iwd~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---  235 (387)
                      ...+..+..++++..+++...  .+..  +.+.|+......      .............-+.. . ++.+++....   
T Consensus       232 ~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~  309 (430)
T d1qfma1         232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-E-GTVFTFKTNRHSP  309 (430)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-E-TTEEEEEECTTCT
T ss_pred             CceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEec-C-CceeecccCcccc
Confidence            234566778888844444332  2333  444455443211      11122222222222222 2 3334443332   


Q ss_pred             CCeEEEEEeccCCCCCCCCceEE-eccccceEEEEEEcCCCCeeEEEecCCC--eEEEEeCCCCCceeccCCCCCCCCce
Q 016547          236 DNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAG  312 (387)
Q Consensus       236 dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ll~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~  312 (387)
                      ++.|...++....    ...... +..+...+..-.+...+.+|++....++  .|+++++......             
T Consensus       310 ~~~L~~~~~~~~~----~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~-------------  372 (430)
T d1qfma1         310 NYRLINIDFTDPE----ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-------------  372 (430)
T ss_dssp             TCEEEEEETTBCC----GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-------------
T ss_pred             cceeEEecCCCCc----cccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE-------------
Confidence            3566666666521    111222 3334444544444444555665655554  4788888764221             


Q ss_pred             eeeeeccCCCCeeEEEEccCCCeEEEEecCCCCCCCCCceEEEEecC
Q 016547          313 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  359 (387)
Q Consensus       313 ~~~~~~~~~~~v~~~~~~~~~~~l~~s~s~d~~tg~~dg~i~iw~~~  359 (387)
                        .......+.|..+...++...+.++.+    +=-.-.++.-+|+.
T Consensus       373 --~~~~~~~~sv~~~~~~~~~~~~~~~~s----s~~tP~~~y~~Dl~  413 (430)
T d1qfma1         373 --KIFPLEVGSVVGYSGQKKDTEIFYQFT----SFLSPGIIYHCDLT  413 (430)
T ss_dssp             --EEECCCSSEEEEEECCTTCSEEEEEEE----CSSCCCEEEEEETT
T ss_pred             --EecCCCCceEeeccCCCCCCEEEEEEc----CCCCCCeEEEEECC
Confidence              111222345555666666666666554    23345788889988

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.61  E-value=0.15  Score=43.87  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             CCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccc-eEEE
Q 016547          190 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLC  268 (387)
Q Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-~i~~  268 (387)
                      ..|.|.-+|+.+++.  .-... ...+..+-.... .+.++++|+.||.++.+|.++      ++.+-+++-... .-.-
T Consensus       442 ~~G~l~AiD~~TG~~--~W~~~-~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~t------Ge~lW~~~l~~~~~a~P  511 (571)
T d2ad6a1         442 EMGQIRAFDLTTGKA--KWTKW-EKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKD------GKELWNFKMPSGGIGSP  511 (571)
T ss_dssp             CCEEEEEECTTTCCE--EEEEE-ESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCC
T ss_pred             CcccEEEeccCCCce--eeEcC-CCCCCCcceeEe-cCCEEEEECCCCeEEEEECCC------CcEEEEEECCCCceecc
Confidence            347888899998882  22211 122222111222 567888899999999999999      999988763211 1112


Q ss_pred             EEEcCCCCeeEEE
Q 016547          269 VQWSPDKSSVFGS  281 (387)
Q Consensus       269 ~~~~~~~~~ll~s  281 (387)
                      +.|..+|+..++.
T Consensus       512 ~ty~~dGkqYi~v  524 (571)
T d2ad6a1         512 MTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             eEEEECCEEEEEE
Confidence            4455577654433

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.43  Score=38.21  Aligned_cols=186  Identities=7%  Similarity=-0.019  Sum_probs=95.8

Q ss_pred             cEEEEEecCCCCcEEEEecCCCcEEEEeccCCCCcccccCCCCCCCeEEEeccCCCceEEEEECCCCCEEEEecCCCeEE
Q 016547           33 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  112 (387)
Q Consensus        33 ~v~~i~~~~~~~~~l~t~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~~~~~~~l~s~~~d~~i~  112 (387)
                      ...-++.++ ...+++.|+.++ ++|-.++.-........ ............   .|..++|+.+  .|+.. .++.+.
T Consensus        38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~-~~~~~~~~~~ip---~v~~vafs~d--~l~v~-~~~~l~  108 (381)
T d1xipa_          38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDS-TPLTFKWEKEIP---DVIFVCFHGD--QVLVS-TRNALY  108 (381)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSS-CCCCCSEEEECT---TEEEEEEETT--EEEEE-ESSEEE
T ss_pred             ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccC-CCCcceeccCCC---CeEEEEeeCC--EEEEE-eCCCEE
Confidence            345666666 555777777775 66776543211110000 001112222221   4788999654  45544 356777


Q ss_pred             EEEcCCCcCccccCCCcccCCCCCCceeccCCCCCCCCCCCCCCCCCCCceeecCCCCCeEEEEEccCCCeeEEEecCCC
Q 016547          113 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  192 (387)
Q Consensus       113 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  192 (387)
                      .++.......                                        .....-..++..+.++|..   ++....++
T Consensus       109 ~~~~~~l~~~----------------------------------------~~~~~~~~~~~~~~~~p~~---~~l~~~~~  145 (381)
T d1xipa_         109 SLDLEELSEF----------------------------------------RTVTSFEKPVFQLKNVNNT---LVILNSVN  145 (381)
T ss_dssp             EEESSSTTCE----------------------------------------EEEEECSSCEEEEEECSSE---EEEEETTS
T ss_pred             EEEeeccccc----------------------------------------cccccccccccceecCCce---eEEEecCC
Confidence            7776542111                                        1111223567788887753   55666789


Q ss_pred             eEEEEEccCCCCceeEE---eeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE-EeccCCCCCCCCceEEeccccceEEE
Q 016547          193 CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSADNSVRMF-DRRNLTSNGVGSPINKFEGHSAAVLC  268 (387)
Q Consensus       193 ~i~iwd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~~i~~  268 (387)
                      .+.++++..........   -..-.+.+.+++|++ .+..++++..++ ..+- ++..      ...+..-......|.+
T Consensus       146 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i~~------~~~~~~p~~~~~~v~s  217 (381)
T d1xipa_         146 DLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEFSL------PSELEELPVEEYSPLS  217 (381)
T ss_dssp             EEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEECC------CHHHHTSCTTTSEEEE
T ss_pred             CEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCCCC------ccccCCCcCCCcceeE
Confidence            99999998876221110   011235677888887 777777764332 2111 1111      1111100113346788


Q ss_pred             EEEcCCCCee
Q 016547          269 VQWSPDKSSV  278 (387)
Q Consensus       269 ~~~~~~~~~l  278 (387)
                      |.|-.+..++
T Consensus       218 I~WL~~~~F~  227 (381)
T d1xipa_         218 VTILSPQDFL  227 (381)
T ss_dssp             EEESSSSEEE
T ss_pred             EEEecCceEE
Confidence            9998776643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.32  E-value=0.49  Score=37.40  Aligned_cols=103  Identities=8%  Similarity=0.124  Sum_probs=58.2

Q ss_pred             CCeEEEEEccCCCeeEEEecC---------------CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEe-
Q 016547          170 DTVEDVTFCPSSAQEFCSVGD---------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-  233 (387)
Q Consensus       170 ~~v~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-  233 (387)
                      ...+++....++ .+++|-..               -+...+|....++   .......-...+.|+++| ++++|+++ 
T Consensus       150 ~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~---~~~~~~~l~~pNGI~~s~-d~~~lyVa~  224 (340)
T d1v04a_         150 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---VRVVAEGFDFANGINISP-DGKYVYIAE  224 (340)
T ss_dssp             SSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC---EEEEEEEESSEEEEEECT-TSSEEEEEE
T ss_pred             cCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc---eEEEcCCCCccceeEECC-CCCEEEEEe
Confidence            447888888888 67777311               1233444444444   222223345689999999 77655554 


Q ss_pred             eCCCeEEEEEeccCCCCCCCCceEEeccccceEEEEEEcCCCCeeEEE
Q 016547          234 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  281 (387)
Q Consensus       234 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~s  281 (387)
                      +..+.|+.|++.....   ......+. -....-.+.+.+.+..+.++
T Consensus       225 t~~~~i~~y~~~~~~~---l~~~~~~~-l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         225 LLAHKIHVYEKHANWT---LTPLRVLS-FDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             GGGTEEEEEEECTTSC---EEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred             CCCCeEEEEEeCCCcc---cceEEEec-CCCCCCccEEecCCCEEEEE
Confidence            5578999999875211   11222222 34556778887644334433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.70  E-value=1.1  Score=38.42  Aligned_cols=21  Identities=10%  Similarity=0.110  Sum_probs=17.7

Q ss_pred             eeEEEecCCCeEEEEEccCCC
Q 016547          183 QEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~  203 (387)
                      ..++....+|.+.++|..+++
T Consensus       324 ~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         324 KLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             EEEEEECTTSEEEEEETTTCC
T ss_pred             cceeccccccceeeecCCCCc
Confidence            357778899999999998887

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.56  E-value=1.2  Score=38.05  Aligned_cols=20  Identities=10%  Similarity=0.197  Sum_probs=17.0

Q ss_pred             eEEEecCCCeEEEEEccCCC
Q 016547          184 EFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       184 ~l~~~~~dg~i~iwd~~~~~  203 (387)
                      .++.++.+|.+.+.|..+++
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             ceeeccccceEEEEecCCCc
Confidence            46778899999999988877

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.01  E-value=1.1  Score=35.41  Aligned_cols=149  Identities=7%  Similarity=0.104  Sum_probs=84.7

Q ss_pred             CeEEEEEccCCCCceeEEeec-------cCCCeeEEEe--cCCCCC-eEEEeeCCCeEEEEEeccCCCC-CCCCceEEec
Q 016547          192 SCLILWDARVGTSPVIKVEKA-------HDADLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTSN-GVGSPINKFE  260 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~-------~~~~i~~~~~--~~~~~~-~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~  260 (387)
                      ..|.+|.+..... .+..+..       ....++.+|+  ++.++. ++++...+|.+..|.+...... ...+.++++.
T Consensus        99 ~~l~~~~id~~~~-~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~  177 (353)
T d1h6la_          99 NTIEIYAIDGKNG-TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK  177 (353)
T ss_dssp             CEEEEEEEETTTT-EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred             eeEEEEEecCccc-ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC
Confidence            3688887764331 1222211       1224667776  663454 5566677899998887542210 0123445554


Q ss_pred             cccceEEEEEEcCCCCeeEEEecCCCeEEEEeCCCCCceeccCCCCCCCCceeeeeecc--CCCCeeEEEEcc--C-CCe
Q 016547          261 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNA--S-DPW  335 (387)
Q Consensus       261 ~~~~~i~~~~~~~~~~~ll~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~-~~~  335 (387)
                       -...+..+.+.+....|+ .+-++..|..++.......          ....+....+  ....+-.|+.-.  + ..|
T Consensus       178 -~~~q~EGCVvDde~~~Ly-isEE~~Giw~~~a~~~~~~----------~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gy  245 (353)
T d1h6la_         178 -MNSQTEGMAADDEYGSLY-IAEEDEAIWKFSAEPDGGS----------NGTVIDRADGRHLTPDIEGLTIYYAADGKGY  245 (353)
T ss_dssp             -CSSCEEEEEEETTTTEEE-EEETTTEEEEEESSTTSCS----------CCEEEEECSSSSCCSCEEEEEEEECGGGCEE
T ss_pred             -CCCccceEEEeCCCCcEE-EecCccceEEEEeccCCCc----------cceeeecccCccccCCccccEEEEcCCCCeE
Confidence             345788999999888776 5556666666655432111          1122222222  345677777543  3 348


Q ss_pred             EEEEecCCCCCCCCCceEEEEecCC
Q 016547          336 TVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       336 l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      |++|.-.+       ++..|||...
T Consensus       246 livSsQG~-------n~f~vydr~~  263 (353)
T d1h6la_         246 LLASSQGN-------SSYAIYERQG  263 (353)
T ss_dssp             EEEEEGGG-------TEEEEEESST
T ss_pred             EEEEcCCC-------CeEEEEecCC
Confidence            88765444       8999999874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.95  E-value=0.39  Score=41.19  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccceE-EEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV-LCVQ  270 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~i-~~~~  270 (387)
                      |.+.-||+.+++.  .-... +..+...=...- .+.++++|+.||.++.+|.++      ++.+-+++...... .=+.
T Consensus       457 G~l~AiD~~tGk~--~W~~~-~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~T------Ge~LW~~~~~~~~~~~P~t  526 (573)
T d1kb0a2         457 GRLLAWDPVAQKA--AWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAAT------GEKLWEAPTGTGVVAAPST  526 (573)
T ss_dssp             EEEEEEETTTTEE--EEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCEE
T ss_pred             ccEEEeCCCCCce--Eeeec-CCCCCCCceEEE-cCCEEEEECCCCeEEEEECCC------CcEeEEEECCCCccccCEE
Confidence            5677788887772  22221 222222111222 677888999999999999999      99998876322110 0134


Q ss_pred             EcCCCCe
Q 016547          271 WSPDKSS  277 (387)
Q Consensus       271 ~~~~~~~  277 (387)
                      |.-+|+.
T Consensus       527 y~~~GkQ  533 (573)
T d1kb0a2         527 YMVDGRQ  533 (573)
T ss_dssp             EEETTEE
T ss_pred             EEECCEE
Confidence            4457764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.89  E-value=1.1  Score=38.49  Aligned_cols=78  Identities=24%  Similarity=0.344  Sum_probs=49.1

Q ss_pred             CCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce-EEEE
Q 016547          191 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-VLCV  269 (387)
Q Consensus       191 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-i~~~  269 (387)
                      .|.|.-+|+.+++  ..-... ...++..-..+. .+.++++|+.||.++.+|.++      ++.+-+++..... -.-+
T Consensus       465 ~G~l~AiD~~TG~--i~W~~~-~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~T------Ge~LW~~~~~~~~~~~P~  534 (582)
T d1flga_         465 VGSLRAMDPVSGK--VVWEHK-EHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVSPPI  534 (582)
T ss_dssp             SEEEEEECTTTCC--EEEEEE-ESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred             CCeEEEEcCCCCc--EEeecC-CCCCCccceeEE-cCCeEEEeCCCCeEEEEECCC------CcEeEEEECCCCccccCE
Confidence            4678888998887  222222 222222222233 577888899999999999999      9999888632211 1114


Q ss_pred             EEcCCCCee
Q 016547          270 QWSPDKSSV  278 (387)
Q Consensus       270 ~~~~~~~~l  278 (387)
                      .|..+|+..
T Consensus       535 ty~~~G~qY  543 (582)
T d1flga_         535 TWEQDGEQY  543 (582)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCEEE
Confidence            556678643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=1.3  Score=35.27  Aligned_cols=93  Identities=16%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             CeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCC
Q 016547          171 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  250 (387)
Q Consensus       171 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  250 (387)
                      .|..++|+.+  . ++.. .++.+..++...-.  .......-..++..+.++|   ..++....+|.+.++++..    
T Consensus        88 ~v~~vafs~d--~-l~v~-~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~----  154 (381)
T d1xipa_          88 DVIFVCFHGD--Q-VLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRT----  154 (381)
T ss_dssp             TEEEEEEETT--E-EEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTT----
T ss_pred             CeEEEEeeCC--E-EEEE-eCCCEEEEEeeccc--cccccccccccccceecCC---ceeEEEecCCCEEEEEecc----
Confidence            5888999754  2 3333 45678888877654  2333333456778888776   4567777899999999887    


Q ss_pred             CCCCceE------EeccccceEEEEEEcCCCCeeE
Q 016547          251 GVGSPIN------KFEGHSAAVLCVQWSPDKSSVF  279 (387)
Q Consensus       251 ~~~~~~~------~~~~~~~~i~~~~~~~~~~~ll  279 (387)
                        ++...      .+. -.+.+.+++|++.|..++
T Consensus       155 --~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         155 --KSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             --CCEEEEEESEEEEE-ECSSEEEEEETTSCEEEE
T ss_pred             --CccccccCCcceEE-ecCCceEEEEeCCcEEEE
Confidence              33211      111 124567777777776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.16  E-value=1.8  Score=37.04  Aligned_cols=75  Identities=13%  Similarity=0.156  Sum_probs=47.5

Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccc----cceEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----SAAVL  267 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~~~i~  267 (387)
                      |.|.-||+.+++.  .-. ..+..+..+-.++. .+.+++.|+.||.++.+|.++      ++.+-+++..    ..+  
T Consensus       453 G~l~A~D~~TG~~--~W~-~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~T------Ge~LW~~~~~~~~~a~P--  520 (596)
T d1w6sa_         453 GQIKAYNAITGDY--KWE-KMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDT------GDLLWKFKIPSGAIGYP--  520 (596)
T ss_dssp             EEEEEECTTTCCE--EEE-EEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCC--
T ss_pred             ceEEEEeCCCCce--ecc-cCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCC------CcEeeEEECCCCcccCC--
Confidence            6788889888872  211 12222222222233 577888899999999999999      9999888632    223  


Q ss_pred             EEEEcCCCCeeE
Q 016547          268 CVQWSPDKSSVF  279 (387)
Q Consensus       268 ~~~~~~~~~~ll  279 (387)
                       +.|.-+|+..+
T Consensus       521 -~tY~~dGkQYv  531 (596)
T d1w6sa_         521 -MTYTHKGTQYV  531 (596)
T ss_dssp             -EEEEETTEEEE
T ss_pred             -eEEEECCEEEE
Confidence             33445776433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.80  E-value=0.86  Score=38.87  Aligned_cols=79  Identities=14%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CeEEEEEccCCCCceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEEEeccCCCCCCCCceEEeccccce-EEEEE
Q 016547          192 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQ  270 (387)
Q Consensus       192 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-i~~~~  270 (387)
                      |.|.-+|+.+++.  .-.. ....+..+-.+.- .+.+++.|+.||.++.+|.++      ++.+-+++..... -.-+.
T Consensus       438 G~l~A~D~~tGk~--~W~~-~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~t------Ge~LW~~~l~~~~~~~P~t  507 (560)
T d1kv9a2         438 GALLAWDPVKQKA--AWKV-PYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADK------GEALWQFEAQSGIVAAPMT  507 (560)
T ss_dssp             EEEEEEETTTTEE--EEEE-EESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCEE
T ss_pred             cceEEEeCCCCeE--eeec-cCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCC------CcEeEEEECCCCccccCEE
Confidence            6777788888872  2221 1222222222233 567888999999999999999      9998887632211 01134


Q ss_pred             EcCCCCeeEE
Q 016547          271 WSPDKSSVFG  280 (387)
Q Consensus       271 ~~~~~~~ll~  280 (387)
                      +.-+|+..++
T Consensus       508 y~~dGkqyv~  517 (560)
T d1kv9a2         508 FELAGRQYVA  517 (560)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence            4457764343

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.42  E-value=3.2  Score=32.56  Aligned_cols=123  Identities=11%  Similarity=0.164  Sum_probs=75.3

Q ss_pred             CeEEEEE--ccCC-CeeEEEecCCCeEEEEEccCCCC-----ceeEEeeccCCCeeEEEecCCCCCeEEEeeCCCeEEEE
Q 016547          171 TVEDVTF--CPSS-AQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  242 (387)
Q Consensus       171 ~v~~~~~--~~~~-~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~~~  242 (387)
                      .+..+++  ++.. ..++++...+|.+..|.+.....     ..++.+. -...+..+.+++ ....|..+-.+.-|..+
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDd-e~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADD-EYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeC-CCCcEEEecCccceEEE
Confidence            4566666  5553 23567778899999887754321     1223332 456788999998 77888888777666555


Q ss_pred             EeccCCCCCCCCceEEecc--ccceEEEEEEc--CC-CCeeEEEecCCCeEEEEeCCCC
Q 016547          243 DRRNLTSNGVGSPINKFEG--HSAAVLCVQWS--PD-KSSVFGSSAEDGLLNIWDYEKV  296 (387)
Q Consensus       243 d~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~-~~~ll~s~~~d~~i~vwd~~~~  296 (387)
                      +..... ......+....+  ....+..|+.-  ++ ..+|++|.-.+++..|||....
T Consensus       207 ~a~~~~-~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         207 SAEPDG-GSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             ESSTTS-CSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EeccCC-CccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            544211 001222222221  34556677653  33 3378888888999999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.77  E-value=3  Score=29.88  Aligned_cols=72  Identities=13%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             CCCeEEEEEccCCCeeEEEe----cCCCeEEEEEccCCCCceeEE-----eeccCCCeeEEEecCCCCCeEEEeeCCCeE
Q 016547          169 EDTVEDVTFCPSSAQEFCSV----GDDSCLILWDARVGTSPVIKV-----EKAHDADLHCVDWNPLDDNLILTGSADNSV  239 (387)
Q Consensus       169 ~~~v~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i  239 (387)
                      .+.++.....+.. + ++++    +..-.| -+|+++++...+..     ..-..-.|+-+-+.| ++++++.+-.||.-
T Consensus       186 eGS~~~ay~~~gn-K-V~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P-dd~L~iiakrdG~s  261 (313)
T d2hu7a1         186 EGSFSSASISPGM-K-VTAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRS  261 (313)
T ss_dssp             SEEEEEEEECTTS-C-EEEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT-TSCEEEEEEETTEE
T ss_pred             CCcccceeEccCc-e-eeeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCC-CCcEEEEEecCCch
Confidence            4456666666654 3 3443    222334 45877665211100     011233566677999 99999999999999


Q ss_pred             EEEEe
Q 016547          240 RMFDR  244 (387)
Q Consensus       240 ~~~d~  244 (387)
                      ++|+-
T Consensus       262 ~lF~n  266 (313)
T d2hu7a1         262 AVFID  266 (313)
T ss_dssp             EEEET
T ss_pred             heeec
Confidence            99863

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.51  E-value=7.4  Score=32.92  Aligned_cols=21  Identities=10%  Similarity=0.196  Sum_probs=18.0

Q ss_pred             eeEEEecCCCeEEEEEccCCC
Q 016547          183 QEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~  203 (387)
                      ..++.++.+|.+.++|..+++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCC
T ss_pred             eeeeeccccceeEEecccccc
Confidence            357778899999999998887

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.37  E-value=6.5  Score=32.09  Aligned_cols=59  Identities=8%  Similarity=0.121  Sum_probs=39.7

Q ss_pred             ecCCCCCeEEEEEccCCCeeEEEecCCCeEEEEEccCCCCceeEEee------ccCCCeeEEEecC
Q 016547          165 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNP  224 (387)
Q Consensus       165 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~i~~~~~~~  224 (387)
                      +...-...++|+|.|++ ++|++--..|.|++++..++....+..+.      ..+.....|+++|
T Consensus        22 ia~~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          22 ILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             EECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             EECCCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            33334567899999998 76766555799999988776632222221      1235667899998

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.10  E-value=7.7  Score=32.69  Aligned_cols=21  Identities=10%  Similarity=0.200  Sum_probs=17.9

Q ss_pred             eeEEEecCCCeEEEEEccCCC
Q 016547          183 QEFCSVGDDSCLILWDARVGT  203 (387)
Q Consensus       183 ~~l~~~~~dg~i~iwd~~~~~  203 (387)
                      ..++.+..+|.+.++|..+++
T Consensus       315 ~~v~~~~k~G~~~~lDr~tG~  335 (560)
T d1kv9a2         315 KVLMQAPKNGFFYVLDRTNGK  335 (560)
T ss_dssp             EEEEECCTTSEEEEEETTTCC
T ss_pred             eeeeecCccceEEEEecCCCc
Confidence            357778899999999998887

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.15  E-value=10  Score=32.16  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=19.0

Q ss_pred             CCCCeeEEEecCCCeEEEEeCCCCCc
Q 016547          273 PDKSSVFGSSAEDGLLNIWDYEKVGK  298 (387)
Q Consensus       273 ~~~~~ll~s~~~d~~i~vwd~~~~~~  298 (387)
                      ..+..+ ..|+.||.++.+|.++++.
T Consensus       495 tagglV-F~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         495 TAGNLV-FTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             ETTTEE-EEECTTSEEEEEETTTCCE
T ss_pred             EcCCeE-EEeCCCCeEEEEECCCCcE
Confidence            345544 4789999999999999643

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=6.2  Score=29.43  Aligned_cols=25  Identities=8%  Similarity=-0.121  Sum_probs=13.9

Q ss_pred             CeEEEEecCCCCCCCCCceEEEEecCC
Q 016547          334 PWTVVSVSDDCDSTGGGGTLQIWRMSD  360 (387)
Q Consensus       334 ~~l~~s~s~d~~tg~~dg~i~iw~~~~  360 (387)
                      ..+++.++.+  ....-..|.+||+..
T Consensus       243 ~~l~v~GG~~--~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         243 GRIYVLGGYD--GHTFLDSVECYDPDT  267 (288)
T ss_dssp             TEEEEECCBC--SSCBCCEEEEEETTT
T ss_pred             CEEEEEecCC--CCeecceEEEEECCC
Confidence            3455544433  222334688999884