Citrus Sinensis ID: 016548

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MAAMRISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLSMSGSGSSTSEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVSYS
cccHHHHHHHHcccccHHHHcccccccccccccEEcccccccccHHHHHHHHccccccccccccccHHHccccHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHHHcccccccHHHHHHcHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEccccccccccHHHHHHHHHHcccccccccccccccHHHHHHccccccHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEcccccccHHHHHHHHHccccHHHHHHHHcccccEEEEEccccHHHHHHHHHccccEEEEEEEEEcccEEEc
ccEEEEEEccccHHcHHHHHcccccccccccccccHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccEEEEEEEEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHHcccccccccccccccHHHHHHccccccHHHHHHHHHHccccEEEEccccHHHHHcccccccccEEEEcHHHccccHHHHHHHHHHcccHHHHcccccccEEEEEEEcHHHHHHHHHHHHccccEEEEEEEEccccEEEc
MAAMRISIATNTELTSRFFasklnptnnvllncklpflsmasrRVSVNSCVLsmsgsgsstsegltykdagvdidAGSELVRRIAKmapgiggfgglfplgdsylvagtdgvgTKLELAFETGIHDTIGIDLVAMSVNdivtsgakplffLDYFATSHLEVDLAEKVIKGIVDgcqqsdcvllggetaempdfyaageydlsgfavgivkkdsvvdgknivpgdvliglpssgvhsngFSLVRRVLAQSglslkdqlpsenttlgealmaPTVIYVKQVLDIIStggvkgiahitgggftdniprvfpkglgaviyedswkvpAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKEtshtileggrggyeayhigevvngegvsys
maamrisiatnteltsrFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLSmsgsgsstsegltykdAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHItgggftdnipRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILeggrggyeayHIGEVVNGEGVSYS
MAAMRISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNscvlsmsgsgsstsegLTYKDAGVDIDAGSELVRRIAKMApgiggfgglfplgDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVSYS
********ATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVL*************TYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSL********TTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVN*******
********ATNTELTSRFFASKL*P****LLNCKLPFLSMASRRVSV**********************AGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGE*****
MAAMRISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLS*********EGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVSYS
*AAMRISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLSMS********GLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVSYS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAMRISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLSMSGSGSSTSEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVSYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
P52424388 Phosphoribosylformylglyci N/A no 0.987 0.984 0.726 1e-158
Q05728389 Phosphoribosylformylglyci yes no 0.909 0.904 0.776 1e-150
Q46XJ9350 Phosphoribosylformylglyci yes no 0.834 0.922 0.533 3e-97
B3R6D1350 Phosphoribosylformylglyci yes no 0.834 0.922 0.530 2e-96
Q1LJ92350 Phosphoribosylformylglyci yes no 0.834 0.922 0.530 9e-96
Q0K769350 Phosphoribosylformylglyci yes no 0.834 0.922 0.528 1e-95
A9FYZ4348 Phosphoribosylformylglyci yes no 0.816 0.908 0.525 1e-94
Q2KX26349 Phosphoribosylformylglyci yes no 0.816 0.905 0.547 3e-94
B0K3Q6336 Phosphoribosylformylglyci yes no 0.821 0.946 0.531 2e-93
B5EFU7348 Phosphoribosylformylglyci yes no 0.811 0.902 0.545 3e-93
>sp|P52424|PUR5_VIGUN Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial OS=Vigna unguiculata GN=PUR5 PE=2 SV=1 Back     alignment and function desciption
 Score =  558 bits (1439), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/388 (72%), Positives = 323/388 (83%), Gaps = 6/388 (1%)

Query: 6   ISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLSMSGSGSST---- 61
           +S++   EL+  F A+     N+   N       + S  +  +  V S+S S  ++    
Sbjct: 1   MSLSACAELSRCFAAAASAKPNSGKSNSTAATSLVISSPIGHDGAVSSVSRSRKTSRIVA 60

Query: 62  --SEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLELA 119
             S+GLTY+DAGVDIDAG+ELVRRIAKMAPGIGGFGGL+PLGDSYLVAGTDGVGTKL LA
Sbjct: 61  EASQGLTYRDAGVDIDAGAELVRRIAKMAPGIGGFGGLYPLGDSYLVAGTDGVGTKLMLA 120

Query: 120 FETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSD 179
           FETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFAT  L+VD+AEKV+KGIVDGC+QSD
Sbjct: 121 FETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATGRLDVDVAEKVVKGIVDGCKQSD 180

Query: 180 CVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGF 239
           CVLLGGETAEMP  Y  GEYDLSG AVGIVKKDSV++GKNIV GDV+IGLPSSGVHSNGF
Sbjct: 181 CVLLGGETAEMPGLYKEGEYDLSGCAVGIVKKDSVINGKNIVAGDVIIGLPSSGVHSNGF 240

Query: 240 SLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGF 299
           SLVRRVLAQSGLSLKDQLP  N TL EALMAPTVIYVKQVLD+IS GGVKGIAHITGGGF
Sbjct: 241 SLVRRVLAQSGLSLKDQLPGSNITLAEALMAPTVIYVKQVLDLISKGGVKGIAHITGGGF 300

Query: 300 TDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETS 359
           TDNIPRVFP+GLGA+IY+ SW+VPAVF+W+Q+AG+IEDSEMRRTFNMGIGM+LVVS E +
Sbjct: 301 TDNIPRVFPEGLGALIYDGSWEVPAVFRWLQEAGKIEDSEMRRTFNMGIGMILVVSPEAA 360

Query: 360 HTILEGGRGGYEAYHIGEVVNGEGVSYS 387
           + ILE      + Y IGE+++G GV++S
Sbjct: 361 NRILENKGQADKFYRIGEIISGNGVTFS 388

Vigna unguiculata (taxid: 3917)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 1
>sp|Q05728|PUR5_ARATH Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR5 PE=2 SV=2 Back     alignment and function description
>sp|Q46XJ9|PUR5_CUPPJ Phosphoribosylformylglycinamidine cyclo-ligase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|B3R6D1|PUR5_CUPTR Phosphoribosylformylglycinamidine cyclo-ligase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|Q1LJ92|PUR5_RALME Phosphoribosylformylglycinamidine cyclo-ligase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|Q0K769|PUR5_CUPNH Phosphoribosylformylglycinamidine cyclo-ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|A9FYZ4|PUR5_SORC5 Phosphoribosylformylglycinamidine cyclo-ligase OS=Sorangium cellulosum (strain So ce56) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|Q2KX26|PUR5_BORA1 Phosphoribosylformylglycinamidine cyclo-ligase OS=Bordetella avium (strain 197N) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|B0K3Q6|PUR5_THEPX Phosphoribosylformylglycinamidine cyclo-ligase OS=Thermoanaerobacter sp. (strain X514) GN=purM PE=3 SV=1 Back     alignment and function description
>sp|B5EFU7|PUR5_GEOBB Phosphoribosylformylglycinamidine cyclo-ligase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=purM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
255548509394 phosphoribosylamine-glycine ligase, puta 0.979 0.961 0.744 1e-165
225437507406 PREDICTED: phosphoribosylformylglycinami 0.987 0.940 0.766 1e-161
297743953457 unnamed protein product [Vitis vinifera] 0.994 0.842 0.760 1e-160
359488920407 PREDICTED: LOW QUALITY PROTEIN: phosphor 0.987 0.938 0.756 1e-157
1709925388 RecName: Full=Phosphoribosylformylglycin 0.987 0.984 0.726 1e-156
37983566404 5'-aminoimidazole ribonucleotide synthet 0.875 0.839 0.840 1e-152
147852321 529 hypothetical protein VITISV_025347 [Viti 0.984 0.720 0.725 1e-152
242089841387 hypothetical protein SORBIDRAFT_09g00604 0.875 0.875 0.783 1e-151
224128380337 predicted protein [Populus trichocarpa] 0.826 0.949 0.869 1e-151
224068452321 predicted protein [Populus trichocarpa] 0.829 1.0 0.866 1e-150
>gi|255548509|ref|XP_002515311.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] gi|223545791|gb|EEF47295.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 297/399 (74%), Positives = 335/399 (83%), Gaps = 20/399 (5%)

Query: 4   MRISIATNTELTSRFFAS--------KLNPTNNVLLN---CKLPFLSMASRRVSVNSCVL 52
           M  ++A NTEL+    AS        K  P  +  +N    + P LS+++   +  S ++
Sbjct: 1   MTTTVAANTELSRALAASTISSSVRLKFKPARHSSMNRLSYRFPLLSVSA---AAKSSIV 57

Query: 53  SMSGSGSSTSE----GLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAG 108
           SMS  G S S     GLTYKD GVDIDAGSELV+RIAKMAPGIGGFGGL+PLGDSYLVAG
Sbjct: 58  SMSKEGDSKSGDGSGGLTYKDTGVDIDAGSELVKRIAKMAPGIGGFGGLYPLGDSYLVAG 117

Query: 109 TDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVI 168
           TDGVGTKL+LAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHL++DLAEKVI
Sbjct: 118 TDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLDLDLAEKVI 177

Query: 169 KGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIG 228
           KGIVDGCQQSDC LLGGETAEMPDFYA GEYDLSGFAVGIVKKDSV+DGKNIV GDV+IG
Sbjct: 178 KGIVDGCQQSDCTLLGGETAEMPDFYADGEYDLSGFAVGIVKKDSVIDGKNIVAGDVIIG 237

Query: 229 LPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGV 288
           LPS+GVHSNGFSLVRRVLA+SGLSL DQLP E   +GEALMAPTVIYVKQVLD+I+ GGV
Sbjct: 238 LPSNGVHSNGFSLVRRVLARSGLSLNDQLPGEGIAVGEALMAPTVIYVKQVLDLINKGGV 297

Query: 289 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGI 348
           KGIAHITGGGFTDNIPRVFPKGLGAVI+++SW+VPAVFKWIQ+ G+IED+EMRRTFNMGI
Sbjct: 298 KGIAHITGGGFTDNIPRVFPKGLGAVIHKNSWEVPAVFKWIQEVGKIEDAEMRRTFNMGI 357

Query: 349 GMVLVVSKETSHTILEGGRGGYEAYHIGEVVNGEGVSYS 387
           GMVL+V+++ S  +LE G    +AY IGEVV+ EGVSY 
Sbjct: 358 GMVLIVNEDASRKVLEDGH--CKAYQIGEVVSSEGVSYQ 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437507|ref|XP_002275035.1| PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Vitis vinifera] gi|147859594|emb|CAN83527.1| hypothetical protein VITISV_002057 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743953|emb|CBI36923.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488920|ref|XP_002278175.2| PREDICTED: LOW QUALITY PROTEIN: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|1709925|sp|P52424.1|PUR5_VIGUN RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial; AltName: Full=AIR synthase; Short=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; AltName: Full=VUpur5; Flags: Precursor gi|945060|gb|AAC14578.1| aminoimidazole ribonucleotide (AIRS) synthetase [Vigna unguiculata] Back     alignment and taxonomy information
>gi|37983566|gb|AAR06290.1| 5'-aminoimidazole ribonucleotide synthetase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|147852321|emb|CAN82228.1| hypothetical protein VITISV_025347 [Vitis vinifera] Back     alignment and taxonomy information
>gi|242089841|ref|XP_002440753.1| hypothetical protein SORBIDRAFT_09g006040 [Sorghum bicolor] gi|241946038|gb|EES19183.1| hypothetical protein SORBIDRAFT_09g006040 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|224128380|ref|XP_002320315.1| predicted protein [Populus trichocarpa] gi|222861088|gb|EEE98630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068452|ref|XP_002302749.1| predicted protein [Populus trichocarpa] gi|222844475|gb|EEE82022.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2097203389 PUR5 [Arabidopsis thaliana (ta 0.832 0.827 0.795 1.1e-133
TIGR_CMR|SPO_2169348 SPO_2169 "phosphoribosylformyl 0.832 0.925 0.482 1.6e-79
TIGR_CMR|CPS_3196346 CPS_3196 "phosphoribosylformyl 0.811 0.907 0.478 4.3e-77
TIGR_CMR|GSU_1758348 GSU_1758 "phosphoribosylformyl 0.819 0.910 0.483 5.5e-77
UNIPROTKB|A0A547 1003 GART "Glycinamide ribonucleoti 0.813 0.314 0.492 9e-77
UNIPROTKB|P21872 1003 GART "Trifunctional purine bio 0.813 0.314 0.492 9e-77
UNIPROTKB|P08178345 purM "PurM" [Escherichia coli 0.803 0.901 0.503 1.9e-76
TIGR_CMR|BA_0296346 BA_0296 "phosphoribosylformylg 0.826 0.924 0.494 1.9e-76
UNIPROTKB|Q9KPY6346 purM "Phosphoribosylformylglyc 0.806 0.901 0.478 2.4e-76
TIGR_CMR|VC_2226346 VC_2226 "phosphoribosylformylg 0.806 0.901 0.478 2.4e-76
TAIR|locus:2097203 PUR5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 257/323 (79%), Positives = 284/323 (87%)

Query:    65 LTYKDAGVDIDAGSELVRRIAKMAXXXXXXXXXXXXXDSYLVAGTDGVGTKLELAFETGI 124
             L YKD+GVDIDAG+ELV+RIAKMA             DSYLVAGTDGVGTKL+LAFETGI
Sbjct:    66 LNYKDSGVDIDAGAELVKRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGI 125

Query:   125 HDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLG 184
             HDTIGIDLVAMSVNDI+TSGAKPLFFLDYFATS L+VDLAEKVIKGIV+GC+QS+C LLG
Sbjct:   126 HDTIGIDLVAMSVNDIITSGAKPLFFLDYFATSRLDVDLAEKVIKGIVEGCRQSECALLG 185

Query:   185 GETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRR 244
             GETAEMPDFYA GEYDLSGFAVGIVKK SV++GKNIV GDVLIGLPSSGVHSNGFSLVRR
Sbjct:   186 GETAEMPDFYAEGEYDLSGFAVGIVKKTSVINGKNIVAGDVLIGLPSSGVHSNGFSLVRR 245

Query:   245 VLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGGFTDNIP 304
             VLA+S LSLKD LP  ++TLG+ALMAPTVIYVKQVLD+I  GGVKG+AHITGGGFTDNIP
Sbjct:   246 VLARSNLSLKDALPGGSSTLGDALMAPTVIYVKQVLDMIEKGGVKGLAHITGGGFTDNIP 305

Query:   305 RVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILE 364
             RVFP GLGAVI+ D+W++P +FKWIQQ GRIEDSEMRRTFN+GIGMV+VVS E +  ILE
Sbjct:   306 RVFPDGLGAVIHTDAWELPPLFKWIQQTGRIEDSEMRRTFNLGIGMVMVVSPEAASRILE 365

Query:   365 GGRGG-YEAYHIGEVVNGEGVSY 386
               + G Y AY +GEVVNGEGVSY
Sbjct:   366 EVKNGDYVAYRVGEVVNGEGVSY 388
GO:0003824 "catalytic activity" evidence=IEA
GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA;IGI;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA
GO:0005524 "ATP binding" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006164 "purine nucleotide biosynthetic process" evidence=IGI;RCA
GO:0006744 "ubiquinone biosynthetic process" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TIGR_CMR|SPO_2169 SPO_2169 "phosphoribosylformylglycinamidine cyclo-ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3196 CPS_3196 "phosphoribosylformylglycinamidine cyclo-ligase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1758 GSU_1758 "phosphoribosylformylglycinamidine cyclo-ligase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|A0A547 GART "Glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P21872 GART "Trifunctional purine biosynthetic protein adenosine-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P08178 purM "PurM" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0296 BA_0296 "phosphoribosylformylglycinamidine cyclo-ligase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPY6 purM "Phosphoribosylformylglycinamidine cyclo-ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2226 VC_2226 "phosphoribosylformylglycinamidine cyclo-ligase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RC57PUR5_THETN6, ., 3, ., 3, ., 10.52250.82170.9464yesno
B3E3K3PUR5_GEOLS6, ., 3, ., 3, ., 10.51970.80870.8968yesno
A4TMP3PUR5_YERPP6, ., 3, ., 3, ., 10.53060.80360.8962yesno
Q668E5PUR5_YERPS6, ., 3, ., 3, ., 10.52760.80360.8962yesno
B2K9K0PUR5_YERPB6, ., 3, ., 3, ., 10.52760.80360.8962yesno
Q60BU2PUR5_METCA6, ., 3, ., 3, ., 10.51960.81130.9101yesno
P43848PUR5_HAEIN6, ., 3, ., 3, ., 10.53330.80100.9011yesno
Q1H4W1PUR5_METFK6, ., 3, ., 3, ., 10.53840.76740.8583yesno
Q21MC3PUR5_SACD26, ., 3, ., 3, ., 10.53090.83460.9176yesno
B0BQ30PUR5_ACTPJ6, ., 3, ., 3, ., 10.54300.81390.9130yesno
B5EFU7PUR5_GEOBB6, ., 3, ., 3, ., 10.54540.81130.9022yesno
Q3J517PUR5_RHOS46, ., 3, ., 3, ., 10.51600.84490.9396yesno
Q39UK1PUR5_GEOMG6, ., 3, ., 3, ., 10.51330.82940.9224yesno
B1JSF4PUR5_YERPY6, ., 3, ., 3, ., 10.52760.80360.8962yesno
A5UEU3PUR5_HAEIG6, ., 3, ., 3, ., 10.53270.81390.9156yesno
B0K3Q6PUR5_THEPX6, ., 3, ., 3, ., 10.53150.82170.9464yesno
B9KMR6PUR5_RHOSK6, ., 3, ., 3, ., 10.51600.84490.9396yesno
A1KU60PUR5_NEIMF6, ., 3, ., 3, ., 10.50.83970.9447yesno
A9LZD2PUR5_NEIM06, ., 3, ., 3, ., 10.50140.83720.9418yesno
Q46XJ9PUR5_CUPPJ6, ., 3, ., 3, ., 10.53390.83460.9228yesno
Q1CK40PUR5_YERPN6, ., 3, ., 3, ., 10.53060.80360.8962yesno
A3N1A1PUR5_ACTP26, ., 3, ., 3, ., 10.54300.81390.9130yesno
C6E6M9PUR5_GEOSM6, ., 3, ., 3, ., 10.53330.81130.9022yesno
C0ZKC8PUR5_BREBN6, ., 3, ., 3, ., 10.53450.81910.9161yesno
Q05728PUR5_ARATH6, ., 3, ., 3, ., 10.77650.90950.9048yesno
A3PHH4PUR5_RHOS16, ., 3, ., 3, ., 10.51600.84490.9396yesno
P52424PUR5_VIGUN6, ., 3, ., 3, ., 10.72680.98700.9845N/Ano
Q28RA9PUR5_JANSC6, ., 3, ., 3, ., 10.52020.83720.9283yesno
Q167K4PUR5_ROSDO6, ., 3, ., 3, ., 10.51910.83460.9281yesno
A7FG37PUR5_YERP36, ., 3, ., 3, ., 10.52760.80360.8962yesno
Q3A515PUR5_PELCD6, ., 3, ., 3, ., 10.52830.82420.9114yesno
Q1C5P2PUR5_YERPA6, ., 3, ., 3, ., 10.53060.80360.8962yesno
A7HYF2PUR5_PARL16, ., 3, ., 3, ., 10.53310.81390.8677yesno
Q0K769PUR5_CUPNH6, ., 3, ., 3, ., 10.52800.83460.9228yesno
B3R6D1PUR5_CUPTR6, ., 3, ., 3, ., 10.53090.83460.9228yesno
Q8ZCX8PUR5_YERPE6, ., 3, ., 3, ., 10.53060.80360.8962yesno
A9QZW5PUR5_YERPG6, ., 3, ., 3, ., 10.53060.80360.8962yesno
Q2Y5R7PUR5_NITMU6, ., 3, ., 3, ., 10.53590.75190.8267yesno
A9FYZ4PUR5_SORC56, ., 3, ., 3, ., 10.52550.81650.9080yesno
Q9JUA2PUR5_NEIMA6, ., 3, ., 3, ., 10.50140.83720.9418yesno
B0KBQ3PUR5_THEP36, ., 3, ., 3, ., 10.53150.82170.9464yesno
Q126R8PUR5_POLSJ6, ., 3, ., 3, ., 10.52040.83970.9393yesno
Q7NS12PUR5_CHRVO6, ., 3, ., 3, ., 10.54050.82170.9217yesno
A9I602PUR5_BORPD6, ., 3, ., 3, ., 10.56310.75450.8366yesno
A6VMA4PUR5_ACTSZ6, ., 3, ., 3, ., 10.52550.81650.9159yesno
Q1GGK7PUR5_RUEST6, ., 3, ., 3, ., 10.52320.84750.9425yesno
Q5LRF9PUR5_RUEPO6, ., 3, ., 3, ., 10.50290.84750.9425yesno
Q2KX26PUR5_BORA16, ., 3, ., 3, ., 10.54790.81650.9054yesno
Q9JZ80PUR5_NEIMB6, ., 3, ., 3, ., 10.50140.83720.9418yesno
Q1LJ92PUR5_RALME6, ., 3, ., 3, ., 10.53090.83460.9228yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.3.10.979
3rd Layer6.3.30.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028078001
RecName- Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; (331 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00007436001
SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (123 aa)
• •• •• 0.997
GSVIVG00000242001
SubName- Full=Chromosome chr12 scaffold_103, whole genome shotgun sequence; (461 aa)
•••• •• 0.989
GSVIVG00035979001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (582 aa)
• •• •• 0.986
GSVIVG00011727001
SubName- Full=Chromosome undetermined scaffold_332, whole genome shotgun sequence; (300 aa)
•••• •• 0.971
GSVIVG00008008001
SubName- Full=Chromosome undetermined scaffold_1178, whole genome shotgun sequence; (352 aa)
• ••  • 0.970
GSVIVG00007435001
SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (407 aa)
•  •••• 0.914
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
• ••  • 0.906
GSVIVG00012972001
SubName- Full=Chromosome undetermined scaffold_419, whole genome shotgun sequence; (221 aa)
•    •• 0.870
GSVIVG00025551001
RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)
• ••  • 0.846
GSVIVG00024152001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (462 aa)
•    •• 0.806

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PLN02557379 PLN02557, PLN02557, phosphoribosylformylglycinamid 0.0
PRK05385327 PRK05385, PRK05385, phosphoribosylaminoimidazole s 0.0
cd02196297 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide 1e-173
COG0150345 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) 1e-168
TIGR00878332 TIGR00878, purM, phosphoribosylaminoimidazole synt 1e-148
cd00396222 cd00396, PurM-like, AIR (aminoimidazole ribonucleo 5e-30
pfam02769150 pfam02769, AIRS_C, AIR synthase related protein, C 7e-30
pfam0058696 pfam00586, AIRS, AIR synthase related protein, N-t 5e-23
cd06061298 cd06061, PurM-like1, AIR synthase (PurM) related p 5e-08
COG0611317 COG0611, ThiL, Thiamine monophosphate kinase [Coen 9e-08
COG0309339 COG0309, HypE, Hydrogenase maturation factor [Post 7e-07
TIGR02124320 TIGR02124, hypE, hydrogenase expression/formation 1e-06
cd02194291 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase 1e-06
TIGR01379317 TIGR01379, thiL, thiamine-monophosphate kinase 1e-05
TIGR01736 715 TIGR01736, FGAM_synth_II, phosphoribosylformylglyc 1e-05
TIGR03267323 TIGR03267, methan_mark_2, putative methanogenesis 1e-04
COG0046 743 COG0046, PurL, Phosphoribosylformylglycinamidine ( 1e-04
cd02192283 cd02192, PurM-like3, AIR synthase (PurM) related p 2e-04
cd02195287 cd02195, SelD, Selenophosphate synthetase (SelD) c 4e-04
PRK05731318 PRK05731, PRK05731, thiamine monophosphate kinase; 4e-04
COG2144324 COG2144, COG2144, Selenophosphate synthetase-relat 0.001
TIGR00476347 TIGR00476, selD, selenium donor protein 0.003
>gnl|CDD|178172 PLN02557, PLN02557, phosphoribosylformylglycinamidine cyclo-ligase Back     alignment and domain information 
 Score =  645 bits (1666), Expect = 0.0
 Identities = 292/388 (75%), Positives = 313/388 (80%), Gaps = 12/388 (3%)

Query: 1   MAAMRISIATNTELTSRFFASKLNPTNNVLLNCKLPFLSMASRRVSVNSCVLSMSGSGSS 60
            +A   S A     +    +S        L   +      A  R        S +G  + 
Sbjct: 1   SSACYSSQAAPARASFSSSSS--------LPPLRRSAAQAARARRKRARLSPSKAGRSNK 52

Query: 61  --TSEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPLGDSYLVAGTDGVGTKLEL 118
             + EGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFP GDSYLVAGTDGVGTKL+L
Sbjct: 53  DDSEEGLTYKDAGVDIDAGSELVRRIAKMAPGIGGFGGLFPFGDSYLVAGTDGVGTKLKL 112

Query: 119 AFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQS 178
           AFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHL+VDLAEKVIKGIVDGCQQS
Sbjct: 113 AFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIKGIVDGCQQS 172

Query: 179 DCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNG 238
           DC LLGGETAEMP FYA GEYDLSGFAVG VKKD+V+DGKNIV GDVLIGLPSSGVHSNG
Sbjct: 173 DCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLIGLPSSGVHSNG 232

Query: 239 FSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGIAHITGGG 298
           FSLVRRVLA+SGLSLKDQLP  + T+GEALMAPTVIYVKQVLDIIS GGVKGIAHITGGG
Sbjct: 233 FSLVRRVLAKSGLSLKDQLPGASVTIGEALMAPTVIYVKQVLDIISKGGVKGIAHITGGG 292

Query: 299 FTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKET 358
           FTDNIPRVFPKGLGA I   SW+VP +FKW+Q+AG IED+EMRRTFNMGIGMVLVVS E 
Sbjct: 293 FTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMGIGMVLVVSPEA 352

Query: 359 SHTILEGGRGGYEAYHIGEVVNGEGVSY 386
           +  ILE   G Y AY IGEV+NGEGV Y
Sbjct: 353 ADRILEE--GAYPAYRIGEVINGEGVVY 378

Length = 379
>gnl|CDD|235439 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional Back     alignment and domain information
>gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis Back     alignment and domain information
>gnl|CDD|223228 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase Back     alignment and domain information
>gnl|CDD|100027 cd00396, PurM-like, AIR (aminoimidazole ribonucleotide) synthase related protein Back     alignment and domain information
>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|216008 pfam00586, AIRS, AIR synthase related protein, N-terminal domain Back     alignment and domain information
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function Back     alignment and domain information
>gnl|CDD|223684 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|223386 COG0309, HypE, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233738 TIGR02124, hypE, hydrogenase expression/formation protein HypE Back     alignment and domain information
>gnl|CDD|100030 cd02194, ThiL, ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine Back     alignment and domain information
>gnl|CDD|233387 TIGR01379, thiL, thiamine-monophosphate kinase Back     alignment and domain information
>gnl|CDD|233552 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine synthase II Back     alignment and domain information
>gnl|CDD|132311 TIGR03267, methan_mark_2, putative methanogenesis marker protein 2 Back     alignment and domain information
>gnl|CDD|223124 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup 3 of unknown function Back     alignment and domain information
>gnl|CDD|100031 cd02195, SelD, Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes Back     alignment and domain information
>gnl|CDD|235583 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|225055 COG2144, COG2144, Selenophosphate synthetase-related proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|232993 TIGR00476, selD, selenium donor protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
COG0150345 PurM Phosphoribosylaminoimidazole (AIR) synthetase 100.0
KOG0237788 consensus Glycinamide ribonucleotide synthetase (G 100.0
PLN02557379 phosphoribosylformylglycinamidine cyclo-ligase 100.0
TIGR00878332 purM phosphoribosylaminoimidazole synthetase. This 100.0
PRK05385327 phosphoribosylaminoimidazole synthetase; Provision 100.0
cd02196297 PurM PurM (Aminoimidazole Ribonucleotide [AIR] syn 100.0
COG0611317 ThiL Thiamine monophosphate kinase [Coenzyme metab 100.0
TIGR02124320 hypE hydrogenase expression/formation protein HypE 100.0
TIGR01379317 thiL thiamine-monophosphate kinase. Proteins scori 100.0
cd02194291 ThiL ThiL (Thiamine-monophosphate kinase) plays a 100.0
cd02197293 HypE HypE (Hydrogenase expression/formation protei 100.0
TIGR00476347 selD selenium donor protein. In prokaryotes, the i 100.0
PRK00943347 selenophosphate synthetase; Provisional 100.0
PRK05731318 thiamine monophosphate kinase; Provisional 100.0
PRK14105345 selenophosphate synthetase; Provisional 100.0
cd02691346 PurM-like2 AIR synthase (PurM) related protein, ar 100.0
cd06061298 PurM-like1 AIR synthase (PurM) related protein, su 100.0
cd02195287 SelD Selenophosphate synthetase (SelD) catalyzes t 100.0
COG0309339 HypE Hydrogenase maturation factor [Posttranslatio 100.0
TIGR03267323 methan_mark_2 putative methanogenesis marker prote 100.0
cd02192283 PurM-like3 AIR synthase (PurM) related protein, su 100.0
cd00396222 PurM-like AIR (aminoimidazole ribonucleotide) synt 100.0
PRK14090 601 phosphoribosylformylglycinamidine synthase II; Pro 100.0
cd02203313 PurL_repeat1 PurL subunit of the formylglycinamide 100.0
TIGR01736 715 FGAM_synth_II phosphoribosylformylglycinamidine sy 100.0
cd02204264 PurL_repeat2 PurL subunit of the formylglycinamide 100.0
PRK01213 724 phosphoribosylformylglycinamidine synthase II; Pro 100.0
TIGR01736715 FGAM_synth_II phosphoribosylformylglycinamidine sy 100.0
PRK01213724 phosphoribosylformylglycinamidine synthase II; Pro 100.0
COG2144324 Selenophosphate synthetase-related proteins [Gener 100.0
cd02193272 PurL Formylglycinamide ribonucleotide amidotransfe 100.0
COG0046 743 PurL Phosphoribosylformylglycinamidine (FGAM) synt 99.93
COG0046743 PurL Phosphoribosylformylglycinamidine (FGAM) synt 99.92
COG0709346 SelD Selenophosphate synthase [Amino acid transpor 99.92
COG1973449 HypE Hydrogenase maturation factor [Posttranslatio 99.91
TIGR01735 1310 FGAM_synt phosphoribosylformylglycinamidine syntha 99.9
PHA03366 1304 FGAM-synthase; Provisional 99.88
TIGR01739 1202 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM 99.88
PRK05297 1290 phosphoribosylformylglycinamidine synthase; Provis 99.87
TIGR01735 1310 FGAM_synt phosphoribosylformylglycinamidine syntha 99.86
PLN03206 1307 phosphoribosylformylglycinamidine synthase; Provis 99.85
KOG3939312 consensus Selenophosphate synthetase [Signal trans 99.84
PRK05297 1290 phosphoribosylformylglycinamidine synthase; Provis 99.84
PF0058696 AIRS: AIR synthase related protein, N-terminal dom 99.82
PF02769153 AIRS_C: AIR synthase related protein, C-terminal d 99.8
PLN03206 1307 phosphoribosylformylglycinamidine synthase; Provis 99.72
TIGR01857 1239 FGAM-synthase phosphoribosylformylglycinamidine sy 99.66
TIGR01857 1239 FGAM-synthase phosphoribosylformylglycinamidine sy 99.65
PRK14090601 phosphoribosylformylglycinamidine synthase II; Pro 99.61
KOG1907 1320 consensus Phosphoribosylformylglycinamidine syntha 98.8
TIGR01739 1202 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM 98.37
KOG1907 1320 consensus Phosphoribosylformylglycinamidine syntha 97.6
PHA03366 1304 FGAM-synthase; Provisional 96.78
PF12818282 Tegument_dsDNA: dsDNA viral tegument protein; Inte 95.88
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-85  Score=624.94  Aligned_cols=321  Identities=60%  Similarity=1.044  Sum_probs=307.9

Q ss_pred             CCchhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecCC----ceEEEEeecCCCccccccccCChHHHH
Q 016548           63 EGLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLGD----SYLVAGTDGVGTKLELAFETGIHDTIG  129 (387)
Q Consensus        63 ~~~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~~----~~Lv~ttD~v~tk~~~a~~~~~~~~iG  129 (387)
                      +.+||++||||||++++++++||+.+         .++|+|+++|+++.    +.|+++|||+|||+.+|+.+++|+++|
T Consensus         2 ~~~tY~~aGVDi~~g~~~v~~ik~~vk~T~r~~v~gglGgf~~lf~l~~~~~~p~Lv~~tDGVGTKl~~A~~~~k~dTiG   81 (345)
T COG0150           2 TSLTYADAGVDIDAGNEAVERIKPAVKRTRRPEVMGGLGGFAGLFDLGQAYYKPVLVSGTDGVGTKLLLAEDAGKHDTIG   81 (345)
T ss_pred             CcccHHhhCCCHhhHHHHHHHHHHHHHhhcCcccccCCcceeEEEEccCCCccceEEecCCCchHHHHHHHHhCCccccc
Confidence            46899999999999999999998764         38999999999987    999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEE
Q 016548          130 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIV  209 (387)
Q Consensus       130 ~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v  209 (387)
                      +|+|||||||++|.||+|++|+|||+.++++++.++++++||+++|++.||+|+||||++||++|++++||++||++|++
T Consensus        82 ID~VAM~VNDlv~~GAePl~flDY~A~gk~~~~~~~~iv~GiaeGc~~ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvv  161 (345)
T COG0150          82 IDLVAMCVNDLVVQGAEPLFFLDYLATGKLDPEVAAQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGDYDLAGFAVGVV  161 (345)
T ss_pred             cchheeecchhhhcCcchHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHhCCEEeccccccCCCcccCCceeeeeeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHHhhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHHHhCCc
Q 016548          210 KKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDIISTGGV  288 (387)
Q Consensus       210 ~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~~~~~v  288 (387)
                      +++++|+++++++||+|++++|+|+|+|||||+||+++..+..+.+.+|+. .++++|+||+|||+|++++++++++..|
T Consensus       162 ek~~ii~g~~i~~GDviigl~SSG~HSNGySLvRKi~~~~~~~~~~~~~~~~g~~l~e~LL~PTrIYvk~vL~l~~~~~v  241 (345)
T COG0150         162 EKDEIIDGSKVKEGDVIIGLASSGLHSNGYSLVRKIIEESGLDYDDELPEELGKTLGEELLEPTRIYVKPVLALIKEGDV  241 (345)
T ss_pred             EccccccccccCCCCEEEEecCCCcCCCchHHHHHHHHhcCccccccCccccccCHHHHhcCCceeehHHHHHHHhcCCc
Confidence            999999999999999999999999999999999999998777777777764 4689999999999999999999999999


Q ss_pred             cEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHHHHhhcC
Q 016548          289 KGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTILEGGRG  368 (387)
Q Consensus       289 ~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v~~~l~~  368 (387)
                      |+|+|||+|||.+||+|+.+.+++++||..+||+|++|+|+++.++++.+||+|+||||.||+++|++++++++++.+++
T Consensus       242 kg~AHITGGG~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~  321 (345)
T COG0150         242 KGMAHITGGGFVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKE  321 (345)
T ss_pred             ceEEEecCCChhhhChhhcCccceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCeEEEEEEEcCCc
Q 016548          369 G-YEAYHIGEVVNGEG  383 (387)
Q Consensus       369 ~-~~~~vIG~V~~g~g  383 (387)
                      . +++|+||+|+++.+
T Consensus       322 ~g~~a~~iG~V~~~~~  337 (345)
T COG0150         322 QGETAYVIGRVEAGEG  337 (345)
T ss_pred             cCCceEEEEEEEeCCC
Confidence            8 99999999998743

>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase Back     alignment and domain information
>TIGR00878 purM phosphoribosylaminoimidazole synthetase Back     alignment and domain information
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional Back     alignment and domain information
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis Back     alignment and domain information
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02124 hypE hydrogenase expression/formation protein HypE Back     alignment and domain information
>TIGR01379 thiL thiamine-monophosphate kinase Back     alignment and domain information
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine Back     alignment and domain information
>cd02197 HypE HypE (Hydrogenase expression/formation protein) Back     alignment and domain information
>TIGR00476 selD selenium donor protein Back     alignment and domain information
>PRK00943 selenophosphate synthetase; Provisional Back     alignment and domain information
>PRK05731 thiamine monophosphate kinase; Provisional Back     alignment and domain information
>PRK14105 selenophosphate synthetase; Provisional Back     alignment and domain information
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function Back     alignment and domain information
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function Back     alignment and domain information
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes Back     alignment and domain information
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2 Back     alignment and domain information
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function Back     alignment and domain information
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein Back     alignment and domain information
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat Back     alignment and domain information
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II Back     alignment and domain information
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat Back     alignment and domain information
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II Back     alignment and domain information
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only] Back     alignment and domain information
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway Back     alignment and domain information
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form Back     alignment and domain information
>PHA03366 FGAM-synthase; Provisional Back     alignment and domain information
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase Back     alignment and domain information
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form Back     alignment and domain information
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>KOG3939 consensus Selenophosphate synthetase [Signal transduction mechanisms] Back     alignment and domain information
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP Back     alignment and domain information
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP Back     alignment and domain information
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional Back     alignment and domain information
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II Back     alignment and domain information
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II Back     alignment and domain information
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional Back     alignment and domain information
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase Back     alignment and domain information
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PHA03366 FGAM-synthase; Provisional Back     alignment and domain information
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1cli_A345 X-Ray Crystal Structure Of Aminoimidazole Ribonucle 8e-83
3p4e_A349 Phosphoribosylformylglycinamidine Cyclo-Ligase From 1e-82
2btu_A346 Crystal Structure Of Phosphoribosylformylglycinamid 5e-80
2v9y_A334 Human Aminoimidazole Ribonucleotide Synthetase Leng 2e-79
2z01_A348 Crystal Structure Of Phosphoribosylaminoimidazole S 5e-79
3m84_A350 Crystal Structure Of Phosphoribosylaminoimidazole S 3e-60
3mdo_A389 Crystal Structure Of A Putative Phosphoribosylformy 2e-09
3kiz_A394 Crystal Structure Of Putative Phosphoribosylformylg 6e-06
>pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide Synthetase (Purm), From The E. Coli Purine Biosynthetic Pathway, At 2.5 A Resolution Length = 345 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (777), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 163/326 (50%), Positives = 204/326 (62%), Gaps = 15/326 (4%)
Query: 65  LTYKDAGVDIDAGSELVRRIAKMAXXX-------------XXXXXXXXXXDSYLVAGTDG 111
           L+YKDAGVDIDAG+ LV RI  +                           +  LV+GTDG
Sbjct: 7   LSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDG 66
Query: 112 VGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 171
           VGTKL LA +   HDTIGIDLVAM VND+V  GA+PLFFLDY+AT  L+VD A  VI GI
Sbjct: 67  VGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGI 126
Query: 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIVPGDVLIGLPS 231
            +GC QS C L+GGETAEMP  Y   +YD++GF VG+V+K  ++DG  +  GDVLI L S
Sbjct: 127 AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVSDGDVLIALGS 186
Query: 232 SGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLDIISTGGVKGI 291
           SG HSNG+SLVR++L  SG   +     +   L + L+APT IYVK VL++I    V  I
Sbjct: 187 SGPHSNGYSLVRKILEVSGCDPQ-TTELDGKPLADHLLAPTRIYVKSVLELIEKVDVHAI 245
Query: 292 AHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMV 351
           AH+TGGGF +NIPRV P    AVI E SW+ P VF W+Q AG +E  EM RTFN G+GM+
Sbjct: 246 AHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAGNVEHHEMYRTFNCGVGMI 305
Query: 352 LVV-SKETSHTILEGGRGGYEAYHIG 376
           + + + E    +      G  A+ IG
Sbjct: 306 IALPAPEVDKALALLNANGENAWKIG 331
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio Cholerae Length = 349 Back     alignment and structure
>pdb|2BTU|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution. Length = 346 Back     alignment and structure
>pdb|2V9Y|A Chain A, Human Aminoimidazole Ribonucleotide Synthetase Length = 334 Back     alignment and structure
>pdb|2Z01|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Synthetase From Geobacillus Kaustophilus Length = 348 Back     alignment and structure
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Synthetase From Francisella Tularensis Length = 350 Back     alignment and structure
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At 1.91 A Resolution Length = 389 Back     alignment and structure
>pdb|3KIZ|A Chain A, Crystal Structure Of Putative Phosphoribosylformylglycinamidine Cyclo- Ligase (Yp_676759.1) From Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution Length = 394 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
3p4e_A349 Phosphoribosylformylglycinamidine cyclo-ligase; st 0.0
2btu_A346 Phosphoribosyl-aminoimidazole synthetase; synthase 0.0
3m84_A350 Phosphoribosylformylglycinamidine cyclo-ligase; al 0.0
2z01_A348 Phosphoribosylformylglycinamidine cyclo-ligase; al 0.0
2v9y_A334 Phosphoribosylformylglycinamidine cyclo-ligase; mu 1e-180
3kiz_A394 Phosphoribosylformylglycinamidine cyclo-ligase; ST 1e-141
3mdo_A389 Putative phosphoribosylformylglycinamidine cyclo-; 1e-133
2z1e_A338 Hydrogenase expression/formation protein HYPE; [NI 7e-15
3vti_C314 Hydrogenase maturation factor; transferase, carbam 1e-13
2rb9_A334 HYPE protein; hydrogenase maturation, dimer, enzym 4e-13
2z1u_A343 Hydrogenase expression/formation protein HYPE; alp 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3fd5_A394 Selenide, water dikinase 1; selenophosphate synthe 3e-05
2yyd_A345 Selenide, water dikinase; FULL-length selenophosph 6e-05
3u0o_A347 Selenide, water dikinase; ATP binding protein, sel 6e-04
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A Length = 349 Back     alignment and structure
 Score =  554 bits (1429), Expect = 0.0
 Identities = 166/343 (48%), Positives = 223/343 (65%), Gaps = 16/343 (4%)

Query: 55  SGSGSSTSEGLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLGDSY- 104
           S + S  +  L+YKDAGVDIDAG+ LV RI              G+GGFG L  L   Y 
Sbjct: 1   SNAMSGNNPSLSYKDAGVDIDAGNALVERIKGAVKRTRRPEVMGGLGGFGALCELPTKYK 60

Query: 105 ---LVAGTDGVGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEV 161
              LV+GTDGVGTKL LA +   HDTIGIDLVAM VND++  GA+PLFFLDY+AT  L+V
Sbjct: 61  HPVLVSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPLFFLDYYATGKLDV 120

Query: 162 DLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVVDGKNIV 221
           D A +VI GI DGC Q+ C L+GGETAEMP  Y   +YD++GF VG+V+K+ ++DG  + 
Sbjct: 121 DTAAEVISGIADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDGSKVQ 180

Query: 222 PGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLKDQLPSENTTLGEALMAPTVIYVKQVLD 281
            GD LI + SSG HSNG+SLVR++L  S     ++L     T+GE L+APT IY+K  L 
Sbjct: 181 VGDALIAVGSSGPHSNGYSLVRKILEVSKADKNERLA--GKTIGEHLLAPTKIYIKSGLK 238

Query: 282 IISTGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMR 341
           +I+   +  I+HITGGGF +NIPRV P+G  AVI   SW+ P +F+W+Q+ G +   EM 
Sbjct: 239 LIAEHDIHAISHITGGGFWENIPRVLPEGTKAVIDGKSWEWPVIFQWLQEKGNVTTHEMY 298

Query: 342 RTFNMGIGMVLVVSKETSHTILEGGRG-GYEAYHIGEVVNGEG 383
           RTFN G+G+++ + K+ ++  +   +  G  A+ IGE+     
Sbjct: 299 RTFNCGVGLIIALPKDQANAAVALLQAEGETAWVIGEIAAANS 341
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} Length = 346 Back     alignment and structure
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A* Length = 350 Back     alignment and structure
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} Length = 348 Back     alignment and structure
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} Length = 334 Back     alignment and structure
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 394 Back     alignment and structure
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis} Length = 389 Back     alignment and structure
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Length = 338 Back     alignment and structure
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis} Length = 314 Back     alignment and structure
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A Length = 334 Back     alignment and structure
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* Length = 343 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* Length = 394 Back     alignment and structure
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli} Length = 347 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3m84_A350 Phosphoribosylformylglycinamidine cyclo-ligase; al 100.0
3p4e_A349 Phosphoribosylformylglycinamidine cyclo-ligase; st 100.0
3kiz_A394 Phosphoribosylformylglycinamidine cyclo-ligase; ST 100.0
2btu_A346 Phosphoribosyl-aminoimidazole synthetase; synthase 100.0
2z01_A348 Phosphoribosylformylglycinamidine cyclo-ligase; al 100.0
3mdo_A389 Putative phosphoribosylformylglycinamidine cyclo-; 100.0
2v9y_A334 Phosphoribosylformylglycinamidine cyclo-ligase; mu 100.0
3mcq_A319 Thiamine-monophosphate kinase; structural genomics 100.0
3c9u_A342 Thiamine monophosphate kinase; beta barrel, alpha- 100.0
3vti_C314 Hydrogenase maturation factor; transferase, carbam 100.0
2yxz_A311 Thiamin-monophosphate kinase; alpha/beta structure 100.0
2rb9_A334 HYPE protein; hydrogenase maturation, dimer, enzym 100.0
2yyd_A345 Selenide, water dikinase; FULL-length selenophosph 100.0
2z1u_A343 Hydrogenase expression/formation protein HYPE; alp 100.0
3u0o_A347 Selenide, water dikinase; ATP binding protein, sel 100.0
2zod_A345 Selenide, water dikinase; FULL-length selenophosph 100.0
2z1e_A338 Hydrogenase expression/formation protein HYPE; [NI 100.0
3fd5_A394 Selenide, water dikinase 1; selenophosphate synthe 100.0
1vk3_A 615 Phosphoribosylformylglycinamidine synthase II; TM1 100.0
3ac6_A 725 Phosphoribosylformylglycinamidine synthase 2; puri 100.0
3ac6_A725 Phosphoribosylformylglycinamidine synthase 2; puri 100.0
3ugj_A 1303 Phosphoribosylformylglycinamidine synthase; amidot 99.93
1vk3_A615 Phosphoribosylformylglycinamidine synthase II; TM1 99.89
3ugj_A 1303 Phosphoribosylformylglycinamidine synthase; amidot 99.88
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A* Back     alignment and structure
Probab=100.00  E-value=5.7e-72  Score=554.68  Aligned_cols=325  Identities=43%  Similarity=0.795  Sum_probs=299.7

Q ss_pred             CCCchhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEecC-------CceEEEEeecCCCccccccccCCh
Q 016548           62 SEGLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPLG-------DSYLVAGTDGVGTKLELAFETGIH  125 (387)
Q Consensus        62 ~~~~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~~-------~~~Lv~ttD~v~tk~~~a~~~~~~  125 (387)
                      +.++||++|||||++++++|++|++++         .++|||||+|+++       ++.||++||++++|+|+++.+++|
T Consensus         4 ~~~~~y~~~gv~~~~~~~~v~~i~~~~~~~~~~~v~~giGddaav~~~~~~~~~~~~~~lv~stD~~~~k~~~a~~~~~~   83 (350)
T 3m84_A            4 MAGLKYEDAGVNIEAGNQAVERMKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVMCGKF   83 (350)
T ss_dssp             CTTCCCTTTTCCCCCSCHHHHHHHHHHHTTCCTTEECCCGGGCCEEECHHHHHHCSSEEEEEEEECCTTHHHHHHHHTCC
T ss_pred             cccccHHHhCcCHHHHHHHHHHHHHHhhhcCCCCcccCCCCceEEEecCcccccCCCceEEEEcCcCCchHHHHHHhCCH
Confidence            457899999999999999999998754         2799999999986       788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEE
Q 016548          126 DTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFA  205 (387)
Q Consensus       126 ~~iG~~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgta  205 (387)
                      +++||++|++|+|||+||||+|++++++++++++++++++++++||.++|+++||+|+||||+++|++|+++.|++++|+
T Consensus        84 ~~iG~~ava~~vsDiaamGA~P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~p~~~~~~~~~l~gt~  163 (350)
T 3m84_A           84 ENLGYDLFSAATNDIVVMGAKPITFLDYVAHDKLDPAIMEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVI  163 (350)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECTTTBCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCeEEeeeeeEcCCcccCCcccEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEEEcCCCccCCCCCCCCCEEEEeCCCchhhhHHHHHHHHH-hhcCCcccCCCCCc-hhHHHHHhcccchhhHHHHHHHH
Q 016548          206 VGIVKKDSVVDGKNIVPGDVLIGLPSSGVHSNGFSLVRRVL-AQSGLSLKDQLPSE-NTTLGEALMAPTVIYVKQVLDII  283 (387)
Q Consensus       206 vG~v~~~~~l~~~~a~~GD~Ii~~gs~G~~~~G~sl~~~i~-~~~~~~~~~~~p~~-~~~~~e~ll~P~~~~v~~~~~l~  283 (387)
                      +|.+++++++++++++|||.|+++|++|.|++|++++|+++ ++.+..+.+.++.. ...+.+++++|+++|++.+++++
T Consensus       164 vG~v~~~~~l~~~~a~~GD~Ii~tg~~G~~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~l~~~ll~p~r~~~~~~~~l~  243 (350)
T 3m84_A          164 TGIVDRKRIINGENIKEGDIVFGLSSSGLHTNGYSFARKLFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFL  243 (350)
T ss_dssp             EEEEEGGGCCCSTTCCTTCEEEEEECSSSTTSSHHHHHHHHHTTSCCCTTCCCGGGTTCCHHHHHTCCCCCCHHHHHHHH
T ss_pred             EEEEeCCcccccccCCCCCEEEEecCchHHHHHHHHHHHHhhhhhcCCccccccccchhHHHHHHhhhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999876 44334444444321 24689999999999998888888


Q ss_pred             H-hCCccEEecCCCchHhchHhhhcCCCceEEEEcCCCCCcHHHHHHHHhCCCCHHHHHHhcCCCeeEEEEEeccCHHHH
Q 016548          284 S-TGGVKGIAHITGGGFTDNIPRVFPKGLGAVIYEDSWKVPAVFKWIQQAGRIEDSEMRRTFNMGIGMVLVVSKETSHTI  362 (387)
Q Consensus       284 ~-~~~v~a~~DIT~GGL~~~L~~~~~s~~g~~Id~~~ipi~~~~~~i~~~~~i~~~e~~~~fn~G~gll~~v~~e~~~~v  362 (387)
                      + ++.+++|+|||+|||+.+|+||++|++|++|+.++||+++.|+++++.++++|.||+++||+|.|||++|||++++++
T Consensus       244 ~~~~~v~a~~DiTggGL~~~L~ei~~sgvg~~I~~~~iP~~~~~~~~~~~~~~~~~e~~~~~~~g~gll~~v~~~~~~~~  323 (350)
T 3m84_A          244 DNGVDIKGMAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFDKM  323 (350)
T ss_dssp             HTTCCCCEEEECCTTHHHHHHHHHSCTTCEEEECGGGSCCCHHHHHHHHHHTCCHHHHHHHCCTTEEEEEEECGGGHHHH
T ss_pred             hccCCeeEEEeCCCccHHHHHHHHhhhCceEEEEcccCCCcHHHHHHHHhcCCCHHHHHHHHhCCCCEEEEECHHHHHHH
Confidence            7 788999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHhhcCC-C-CeEEEEEEEcCCceEE
Q 016548          363 LEGGRGG-Y-EAYHIGEVVNGEGVSY  386 (387)
Q Consensus       363 ~~~l~~~-~-~~~vIG~V~~g~gv~~  386 (387)
                      ++.+++. + ++++||+|+++++|++
T Consensus       324 ~~~l~~~g~~~a~~IG~V~~~~~v~~  349 (350)
T 3m84_A          324 QELAKKHTNTKLYQIGKITNSGKVEI  349 (350)
T ss_dssp             HHHHTTCTTSCEEEEEEEESSSSEEE
T ss_pred             HHHHHhcCCCCeEEEEEEEeCCcEEE
Confidence            9999877 7 9999999999888876
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A Back     alignment and structure
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} Back     alignment and structure
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} Back     alignment and structure
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis} Back     alignment and structure
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} Back     alignment and structure
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus} Back     alignment and structure
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A Back     alignment and structure
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus} Back     alignment and structure
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A Back     alignment and structure
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A* Back     alignment and structure
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli} Back     alignment and structure
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A Back     alignment and structure
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A Back     alignment and structure
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A* Back     alignment and structure
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A* Back     alignment and structure
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* Back     alignment and structure
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A* Back     alignment and structure
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1clia1166 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide s 3e-50
d1clia2175 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotid 4e-47
d2z1ea1113 d.79.4.1 (A:43-155) Hydrogenase expression/formati 9e-17
d3c9ua1137 d.79.4.1 (A:1-137) Thiamine monophosphate kinase ( 4e-11
d2zoda1152 d.79.4.1 (A:3-154) Selenide, water dikinase SelD { 1e-08
d2z1ea2179 d.139.1.1 (A:156-334) Hydrogenase expression/forma 2e-07
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: PurM N-terminal domain-like
family: PurM N-terminal domain-like
domain: Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  164 bits (416), Expect = 3e-50
 Identities = 92/164 (56%), Positives = 112/164 (68%), Gaps = 13/164 (7%)

Query: 65  LTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLF----PLGDSYLVAGTDG 111
           L+YKDAGVDIDAG+ LV RI  +           G+GGFG L        +  LV+GTDG
Sbjct: 3   LSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDG 62

Query: 112 VGTKLELAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGI 171
           VGTKL LA +   HDTIGIDLVAM VND+V  GA+PLFFLDY+AT  L+VD A  VI GI
Sbjct: 63  VGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGI 122

Query: 172 VDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVKKDSVV 215
            +GC QS C L+GGETAEMP  Y   +YD++GF VG+V+K  ++
Sbjct: 123 AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEII 166
>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Length = 113 Back     information, alignment and structure
>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL) N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 Back     information, alignment and structure
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Length = 152 Back     information, alignment and structure
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Length = 179 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1clia1166 Aminoimidazole ribonucleotide synthetase (PurM) N- 100.0
d1clia2175 Aminoimidazole ribonucleotide synthetase (PurM) C- 100.0
d3c9ua1137 Thiamine monophosphate kinase (ThiL) N-terminal do 99.95
d2z1ea1113 Hydrogenase expression/formation protein HypE {The 99.91
d2zoda1152 Selenide, water dikinase SelD {Aquifex aeolicus [T 99.9
d2z1ea2179 Hydrogenase expression/formation protein HypE {The 99.88
d3c9ua2163 Thiamine monophosphate kinase (ThiL) C-terminal do 99.88
d2zoda2182 Selenide, water dikinase SelD {Aquifex aeolicus [T 99.74
d1vk3a3179 Phosphoribosylformylglycinamidine synthase II, dom 99.72
d1vk3a2162 Phosphoribosylformylglycinamidine synthase II, dom 99.66
d1t3ta6187 FGAM synthase PurL, PurM-like module, C1 and C2 do 99.43
d1t3ta7217 FGAM synthase PurL, PurM-like module, C1 and C2 do 99.15
d1vk3a1165 Phosphoribosylformylglycinamidine synthase II, dom 99.04
d1t3ta5200 FGAM synthase PurL, PurM-like module, N1 and N2 do 98.49
d1t3ta4209 FGAM synthase PurL, PurM-like module, N1 and N2 do 95.55
>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: PurM N-terminal domain-like
family: PurM N-terminal domain-like
domain: Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-44  Score=314.76  Aligned_cols=152  Identities=61%  Similarity=1.050  Sum_probs=145.0

Q ss_pred             CchhhhcCcCHHHHHHHHHHHHhhC---------CCCCCceEEEec----CCceEEEEeecCCCccccccccCChHHHHH
Q 016548           64 GLTYKDAGVDIDAGSELVRRIAKMA---------PGIGGFGGLFPL----GDSYLVAGTDGVGTKLELAFETGIHDTIGI  130 (387)
Q Consensus        64 ~~~y~~~gvdi~~~~~~v~~i~~~~---------~~~GdDaavi~~----~~~~Lv~ttD~v~tk~~~a~~~~~~~~iG~  130 (387)
                      ++||++|||||+++++++++|++..         .++|+|++++++    ++|.||.+||++|||+.++.++++|+++||
T Consensus         2 sltY~~AGVDI~~~~~~v~~ik~~~~~T~~~~v~~~~Ggf~g~~~~~~~~~~p~Lv~~tDGVGTK~~iA~~~~~~~~iG~   81 (166)
T d1clia1           2 SLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGI   81 (166)
T ss_dssp             CTTTSSSCCCTTHHHHHHHHTHHHHHTTCCTTEESCSSSSSEEEECCTTCSSEEEEEEEEECCTHHHHHHHTTCCSSHHH
T ss_pred             CCcHHHHCcCHHHHHHHHHHHHHHHHhccCCCcccccCCCcceeecccccCCcEEEEeecccchhhHHHHHhhhhcCcch
Confidence            6999999999999999999998753         378999999984    478899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhCChHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecceeeCCcccCCceeEEEEEEEEEc
Q 016548          131 DLVAMSVNDIVTSGAKPLFFLDYFATSHLEVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAAGEYDLSGFAVGIVK  210 (387)
Q Consensus       131 ~aVa~nvnDIaa~GA~Pl~~ld~l~~~~~~~e~~~~i~~Gi~~ac~~~g~~lvGGeT~~~p~~~~~~~~~lsgtavG~v~  210 (387)
                      |+|+||+|||+|+||+|++|+||++.++++++.++++++||.++|+++||+|+||||++||++|++++|||+||++|+++
T Consensus        82 DlVam~vNDil~~GA~Pl~flDY~a~~~~~~~~~~~iv~Gi~~ac~~~~~~LiGGETAempgvy~~~~~DLaG~~vGive  161 (166)
T d1clia1          82 DLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVE  161 (166)
T ss_dssp             HHHHHHHHHHGGGTCEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEE
T ss_pred             hhHhhccchhhhccHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhCCcccccccccccCcCCCCCEEEEeEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 016548          211 KDSVV  215 (387)
Q Consensus       211 ~~~~l  215 (387)
                      |+++|
T Consensus       162 k~~ii  166 (166)
T d1clia1         162 KSEII  166 (166)
T ss_dssp             GGGCC
T ss_pred             ccccC
Confidence            87764
>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL) N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL) C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t3ta6 d.139.1.1 (A:430-616) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like module, C1 and C2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module, N1 and N2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1t3ta4 d.79.4.1 (A:221-429) FGAM synthase PurL, PurM-like module, N1 and N2 domains {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure