Citrus Sinensis ID: 016552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MSKYRLTISSKRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSKIG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHcccccHHHHccccEEEEEcccccccEEEEEEEcccccEEEcccccccccccccccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEcccccEEcccccccccccEEEEEEccEEEEEccccccccccccccEEEEEcccccccccEEEEcccccccEEEEEEEEEEEccEEEEEEccccEEEEEEcccccEEEccccccccccccEEEEEccEEEEEEccccEEEEEEcccccEEEEccccccccccEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEcccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHEccccccEEEEEcccccccEcccccccccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEEcccccccccccccccHHHcHEEEEccEEEEEEcccccccccccccEEEEccccccccccEEEcccccccccccccEEEEEEccEEEEEcccccEEEEEcccccccEEccccccccccccEEEEEccEEEEEEccccEEEEEccccccEEEEccccccccccHHHHccccEEEEEccccEEEEEEcccccccEEEEEEccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MSKYRLTISSKRQKLTQTlttqplaqdqdkaqdddgddhqpllpglpdhIAHLClshvhpsilhNVCHSwrrliyspsfppflslyalfspksnssstpihlftfdpvsstwdplprpppdpplhlilhhpsflsrnlpVQLVSLSGKLILLAATthnfnpaltrplifdpicrtwtfgpelvtprrwcaagcsrGAVYVASgigsqfssdVAKSVEKWdlmngeknsrwektgelkdgrfsrEAIDAVGWKGKLCLVNvkgaegavYDVVANTWDDMregmvrgwrgpvaamdeevlygidensctlsrydEVMDDWKEVVKSDLLKGARHAAAGGGRVCAvcengggivVVDVkaaaaptifvvdtplgfeaLSVHIMPRMSKIG
Flexible Loop (DISEMBL)
mskyrltisskrqkltqtlttqplaqDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASgigsqfssdvaKSVEKWDlmngeknsrwektgelkdgrfsREAIDAVGWKGKLCLVnvkgaegavYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSKIG
Low Complexity Region (SEG)
MSKYRLTISSKRqkltqtlttqplaqdqdkaqdddgddhqpllpglpdhIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDplprpppdpplhlilhhpSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKgarhaaagggrvcavcENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSKIG
Disordered region (IsUnstruct)
********************************************GLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFS*********IHLFTFDPV***************LHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLM****************GRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIM*******
Disordered Region (DISOPRED)
*********************************************LPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMS***
Disordered Region (DISEMBL)
*********SKRQKLTQTLTTQPLA***********DDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSKIG
Disordered Region (DISPRO)
****************************************PLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKYRLTISSKRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSKIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q8GX29	395	F-box/kelch-repeat protei	yes	no	0.956	0.936	0.502	1e-94
Q93W93	434	F-box/kelch-repeat protei	no	no	0.744	0.663	0.246	5e-15
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.744	0.774	0.230	2e-12
Q0WW40	383	F-box/kelch-repeat protei	no	no	0.400	0.404	0.264	9e-08
Q9C6Z0	398	F-box/kelch-repeat protei	no	no	0.666	0.648	0.224	3e-07
O80582	409	F-box/kelch-repeat protei	no	no	0.622	0.589	0.233	9e-06
Q9P2G9	620	Kelch-like protein 8 OS=H	yes	no	0.540	0.337	0.243	5e-05
P59280	629	Kelch-like protein 8 OS=M	yes	no	0.540	0.332	0.239	0.0004
O82373	383	F-box/kelch-repeat protei	no	no	0.666	0.673	0.214	0.0004
Q9FKJ0	393	F-box/kelch-repeat protei	no	no	0.664	0.653	0.223	0.0008

>sp|Q8GX29|SKI25_ARATH F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1

 Score =  347 bits (889), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 263/390 (67%), Gaps = 20/390 (5%)

Query: 11  KRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHS 69
           +R+ ++ T    P A+   + +   G+++  L+ GLPDHI+ +CLS VH PS+L  VC  
Sbjct: 7   RRESMSTTAAESPPAK---RRRTVTGNENSALIEGLPDHISEICLSLVHRPSLLSAVCTR 63

Query: 70  WRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTWDPLPRPPPDPPLHL 126
           WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W PLP PPPDPPLH 
Sbjct: 64  WRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHR 123

Query: 127 ILH-HPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185
           IL+ HPSF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +P
Sbjct: 124 ILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSP 183

Query: 186 RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFS 242
           RRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFS
Sbjct: 184 RRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFS 243

Query: 243 REAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY 299
           REAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY
Sbjct: 244 REAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPMPEEMLVGWRGPVAAMEEEILY 303

Query: 300 GIDENSCTLSRYDEVMDDWK----EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
            +DE   T+ +YD+   +W+         ++LKGA    A  G++C V  + G IVVVDV
Sbjct: 304 SVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVTADSGKLCVVTGD-GKIVVVDV 362

Query: 356 KAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
            A  A  I+ V+ P G E +SVH++PRMS+
Sbjct: 363 AAEPA-KIWNVEIPDGLEPVSVHVLPRMSQ 391

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 127/324 (39%), Gaps = 36/324 (11%)

Query: 14  KLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHN----VCHS 69
           KL       P A  +  ++ +      PLLPGLPD +A  CL  V P   H     VC  
Sbjct: 50  KLCIQPDINPNAHRRKNSKRERTRIQPPLLPGLPDDLAVACLIRV-PRAEHRKLRLVCKR 108

Query: 70  WRRL-----IYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPL 124
           W RL      YS      +S   ++  K +     I   TFDP+S  W PLP  P +   
Sbjct: 109 WYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGK-ISWNTFDPISQLWQPLPPVPRE--- 164

Query: 125 HLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184
                     S  +      LSG  + L         ++ R + ++     W   P+++ 
Sbjct: 165 ---------YSEAVGFGCAVLSGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLR 215

Query: 185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE 244
            R +         +YVA G        + +++   ++ +  KN RW    ++        
Sbjct: 216 KRHFFGCCVINNCLYVAGGE----CEGIQRTLRSAEVYDPNKN-RWSFIADMSTAMV--- 267

Query: 245 AIDAVGWKGKLCLVNVKGAE---GAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGI 301
            +  V +  K  L  +   +      YD   N+W  + +GMV GWR P  +++   LYG+
Sbjct: 268 PLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSPVSDGMVAGWRNPCTSLNGR-LYGL 326

Query: 302 D-ENSCTLSRYDEVMDDWKEVVKS 324
           D  + C L  +DE  D W + + S
Sbjct: 327 DCRDGCKLRVFDESTDSWNKFMDS 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 131/339 (38%), Gaps = 51/339 (15%)

Query: 15  LTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHV---HPSILHNVCHSWR 71
           + +  TT  +    D+A+++     QPL+ GLP+ IA LCL  +   + ++  +V  SW 
Sbjct: 1   MAEQETTSNINTINDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWN 60

Query: 72  RLIYSPSF----------PPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPD 121
           + I +P F           P+L ++A      N S+  I   + D  S  W  L   PP 
Sbjct: 61  KTITNPRFLFSKQSLSISSPYLFVFAF-----NKSTARIQWQSLDLASGRWFVL---PPM 112

Query: 122 PPLHLILHHPSFLS-RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP 180
           P     +  P  LS  ++P Q     GKL +L     N        +++  +   W+   
Sbjct: 113 PNSFTKISSPHALSCASMPRQ-----GKLFVLGGGDVN-----RSAVVYTALTNRWSCIS 162

Query: 181 ELVTPRRWCAAGCSRGAVYVASG-IGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL--- 236
            +++PR +  +G   G +    G +G   + +    VE +D      N  W    +L   
Sbjct: 163 PMMSPRTYFVSGNVNGKIMAVGGSVGG--NGEATTEVESYD----PDNDTWTVVKKLPMV 216

Query: 237 ----KDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA 292
                     +E     GW        +    G VYD    TW +M  GM  GW G    
Sbjct: 217 LAKYDSAVIGKEMCVTEGWAWPFMFPPM----GQVYDSDEGTWREMSGGMKEGWTGVSVV 272

Query: 293 MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGAR 331
           + + +    +     +  Y    D W+  V  + L+G +
Sbjct: 273 IRDRLFVISEHGDFPMKVYCSDDDTWR-YVSGEKLQGEK 310

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 39  HQPLLPGLPDHIAHLC---LSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNS 95
            Q ++PGLPD +A  C   LSH +  +L  V   WR L+           Y+ +  ++  
Sbjct: 5   EQSIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGAD-------YSCYKARNGW 57

Query: 96  SSTPIHLFT---------FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLS 146
           S + + + T         +DP +  W PLPR      +    HH  F    +   L+ + 
Sbjct: 58  SGSWLFVLTERSKNQWVAYDPEADRWHPLPR---TRAVQDGWHHSGFACVCVSNCLLVIG 114

Query: 147 GKLILLAATTHNFNPALTRPLI-FDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASG 203
           G      ++  +  P +T+ ++ FDP  + W     + TPR   A     G VYVA G
Sbjct: 115 GCYAPSVSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGG 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 110/303 (36%), Gaps = 45/303 (14%)

Query: 40  QPLLPGLPDHIAHLCL------SHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKS 93
           +PL+PGLPD +A  CL      SHV      +VC  W  L  +     F +    F  K 
Sbjct: 51  EPLIPGLPDDVALNCLLRVPVQSHVSSK---SVCKRWHLLFGTKE--TFFAKRKEFGFKD 105

Query: 94  --------NSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSL 145
                   +  +  I     D  + TW  +P  P       +  H  F S ++P +    
Sbjct: 106 PWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDK---VCPH-GFRSVSMPRE---- 157

Query: 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIG 205
            G + +      + +  L   L +D +   WT   +++T R + A+G   G +Y A G  
Sbjct: 158 -GTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNA 216

Query: 206 SQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVN----- 259
           +  +  D A+ +   D         W     +     S    D     GKL +       
Sbjct: 217 ADLYELDCAEVLNPLD-------GNWRPVSNMVAHMAS---YDTAVLNGKLLVTEGWLWP 266

Query: 260 -VKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDW 318
                 G VYD   + W+ M  G+  GW G    + + +    +     +  YD V D W
Sbjct: 267 FFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326

Query: 319 KEV 321
           + +
Sbjct: 327 ETI 329

Arabidopsis thaliana (taxid: 3702)

>sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 50/291 (17%)

Query: 24  LAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHV---HPSILHNVCHSWRRLIYSPSFP 80
           +  +  K +  D      L+PGLP  +A  CL  V     S + +VC SWR L+   SF 
Sbjct: 1   MTMEVSKKKGGDFQQCHELIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFI 60

Query: 81  P----------FLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHH 130
                       L L    +P   +S +       D   S  +  PR    P   L +++
Sbjct: 61  QERRRCGKTELLLCLVQPLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYN 120

Query: 131 PSFLS---------RNLPV--QLVSL--SGKLILLAATTHNFNPALTRP----LIFDPIC 173
            +  +           +P+  + V L  +GK++L+      ++P   +P     + +   
Sbjct: 121 AAMSTWHRVAFPEEEQIPLFCECVVLQDAGKILLIGG----WDPETLQPTRDVYVLEFAG 176

Query: 174 RTWTFGPELVTPRRWCA-AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK 232
           R W  G  +   R + A A  S   VYVA G   Q   +  +S E +D+   E    W  
Sbjct: 177 RKWRRGAPMKESRSFFACASVSPTKVYVAGGHDDQ--KNALRSAEVYDVEKDE----WSS 230

Query: 233 TGELKDGRFSREAIDAVGWKGKLCLVNVKGAE--------GAVYDVVANTW 275
              + +GR   +   AVG   + C+++  G E        G +YD   ++W
Sbjct: 231 VTPMTEGRDECQGF-AVGMGLRFCVLSGYGTESQGRFRSDGEIYDPATDSW 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9P2G9|KLHL8_HUMAN Kelch-like protein 8 OS=Homo sapiens GN=KLHL8 PE=2 SV=4

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 33/242 (13%)

Query: 131 PSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCA 190
           P   SR   V ++S+ GK+   A   H+ N  L    +FDP+   W     + T RR  A
Sbjct: 350 PEMNSRRRHVGVISVEGKV--YAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIA 407

Query: 191 AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG 250
                G +Y   G+     +     VE++D+    ++ +W     +   R         G
Sbjct: 408 LASLGGPIYAIGGLDD---NTCFNDVERYDI----ESDQWSTVAPMNTPR---------G 451

Query: 251 WKGKLCLVN----VKGAEGAV-------YDVVANTWDDMREGMVRGWRGPVAAMDE--EV 297
             G + LVN    V G +G         YD   + W +++E   R     V+ +     V
Sbjct: 452 GVGSVALVNHVYAVGGNDGMASLSSVERYDPHLDKWIEVKEMGQRRAGNGVSKLHGCLYV 511

Query: 298 LYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
           + G D+NS   ++ RYD   + W  V      +G    A   G++ AV  + G   +  V
Sbjct: 512 VGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTV 571

Query: 356 KA 357
           +A
Sbjct: 572 EA 573

Homo sapiens (taxid: 9606)

>sp|P59280|KLHL8_MOUSE Kelch-like protein 8 OS=Mus musculus GN=Klhl8 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 33/242 (13%)

Query: 131 PSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCA 190
           P   SR   V ++S+ GK+   A   H+ N  L    +FDP+   W     + T RR  A
Sbjct: 359 PEMNSRRRHVGVISVEGKV--YAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIA 416

Query: 191 AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG 250
                G +Y    IG    +     VE++D+    ++ +W     +   R         G
Sbjct: 417 LASLGGPIY---AIGGLDDNTCFSDVERYDI----ESDQWSTVAPMNTPR---------G 460

Query: 251 WKGKLCLVN----VKGAEGAV-------YDVVANTWDDMREGMVRGWRGPVAAMDE--EV 297
             G + L+N    V G +G         Y    + W +++E   R     V+ +     V
Sbjct: 461 GVGSVALINHVYAVGGNDGVASLSSVERYHPHLDKWIEVKEMGQRRAGNGVSELHGCLYV 520

Query: 298 LYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
           + G D+NS   ++ RYD   + W  V      +G    A   G++ AV  + G   +  V
Sbjct: 521 VGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTV 580

Query: 356 KA 357
           +A
Sbjct: 581 EA 582

Mus musculus (taxid: 10090)

>sp|O82373|FK128_ARATH F-box/kelch-repeat protein At2g29830 OS=Arabidopsis thaliana GN=At2g29830 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 27/285 (9%)

Query: 26  QDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSL 85
           +D       +  ++ P+L  LP+ +    ++      L   CH     + S +F   ++ 
Sbjct: 13  EDNQNENPQEEVENLPILLQLPEELIASIVA------LIPRCHYPSLSLVSRAFRHLITS 66

Query: 86  YALFSPKSNSSSTPIHLFTFDPVSS----TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQ 141
             L+  +SN   T   L+      +    +W  L R      LH I   P  LS      
Sbjct: 67  QELYVARSNLGFTEPVLYALIGFQAYTRPSWFFLRRSNFPLQLHRIRSLPPMLS---GAA 123

Query: 142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVA 201
           +V++  K+ ++       +PA +  ++ D    TW + P++   R   A G   G +YV 
Sbjct: 124 VVTIDYKMYVMGGCIGYNHPASSNVIVIDCRFHTWKYLPDMKRARCRAATGIIDGRIYVI 183

Query: 202 SGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL--KDGRFSREAIDAVGWKGKLCLVN 259
            G   Q     A  VE +D+        WE        D   + E I  V  +G+L +++
Sbjct: 184 GGCKKQ----DADWVEVFDV----TTQSWETVPSECPNDANENGEFITYVVMQGRLFILD 235

Query: 260 VKGAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGID 302
           ++      Y+ V   W+   +G  ++R W    + +  ++LY +D
Sbjct: 236 LECCFS--YEPVQGLWESWDDGSELMRFWHSSSSCVVGDLLYALD 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 121/318 (38%), Gaps = 61/318 (19%)

Query: 30  KAQDDDGDDHQ-------PLLPGLPDHIAHLCLSHV----HPSILHNVCHSWRRLIYSPS 78
           +  ++D D H+        +LPGL D +A  CL+ V    +PS L  V   + +LI S  
Sbjct: 30  RVGEEDNDGHRLRLGSSDSVLPGLIDDVALNCLAWVPRSDYPS-LSCVNKKYNKLINSGH 88

Query: 79  FPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNL 138
                    +          P     F P+   W  LP+ P D       +H    S  +
Sbjct: 89  LFALRKELGIVEYLVFMVCDPRGWLMFSPMKKKWMVLPKMPCDE----CFNHADKESLAV 144

Query: 139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAV 198
             +L+    +L   A   ++               R W     +  PR   A+G S G +
Sbjct: 145 DDELLVFGRELFQFAIWKYSLRS------------RCWVKCEGMHRPRCLFASG-SLGGI 191

Query: 199 YVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-----------TGELKDGRFSREAID 247
            + +G G+  + ++  S E +D  +G    RWE            +G   DG+F      
Sbjct: 192 AIVAG-GTDMNGNILASAELYDSSSG----RWEMLPNMHSPRRLCSGFFMDGKFYV---- 242

Query: 248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMV----RGWRGP--VAAMDEEVLYGI 301
                G +   NV    G  +D+    W  + EGM     R  + P  V  ++ E L+ +
Sbjct: 243 ----IGGMSSPNVSVTFGEEFDLETRKWRKI-EGMYPNVNRAAQAPPLVVVVNNE-LFTL 296

Query: 302 DENSCTLSRYDEVMDDWK 319
           + ++  + +YD+V + W+
Sbjct: 297 EYSTNMVKKYDKVKNKWE 314

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224106600	397	predicted protein [Populus trichocarpa]	0.963	0.939	0.570	1e-119
255582211	399	conserved hypothetical protein [Ricinus	0.927	0.899	0.577	1e-112
224120934	399	predicted protein [Populus trichocarpa]	0.968	0.939	0.558	1e-109
356495256	375	PREDICTED: F-box/kelch-repeat protein SK	0.906	0.936	0.578	1e-105
357484577	380	F-box/kelch-repeat protein SKIP25 [Medic	0.860	0.876	0.6	1e-103
224146126	379	predicted protein [Populus trichocarpa]	0.922	0.941	0.502	5e-99
449456923	375	PREDICTED: F-box/kelch-repeat protein SK	0.875	0.904	0.598	2e-98
297846538	385	F-box family protein [Arabidopsis lyrata	0.891	0.896	0.529	4e-93
15221685	395	F-box/kelch-repeat protein SKIP25 [Arabi	0.956	0.936	0.502	7e-93
6692128	446	T19E23.14 [Arabidopsis thaliana]	0.956	0.829	0.502	1e-92

>gi|224106600|ref|XP_002314220.1| predicted protein [Populus trichocarpa] gi|222850628|gb|EEE88175.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/396 (57%), Positives = 287/396 (72%), Gaps = 23/396 (5%)

Query: 9   SSKRQKLTQTLTTQPLAQDQDKAQDDDGDDH--QPLLPGLPDHIAHLCLSHVHPSILHNV 66
           +S +  +T T T  P  + Q      DG  H  QPL+PGLP+ IA LCLS VHPS L++V
Sbjct: 3   NSIQTSITDTTTENPTKRRQ---LITDGHRHLEQPLIPGLPNDIAQLCLSLVHPSTLYSV 59

Query: 67  CHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTP----IHLFTFDPVSSTWDPLPRPPPDP 122
           CHSWRRLIYSPSFPPF SLYA+ S  + + + P    I  F FDP+SS WD LP PPPDP
Sbjct: 60  CHSWRRLIYSPSFPPFFSLYAVLSSTNTNHNLPDNNSIQFFNFDPISSRWDSLPPPPPDP 119

Query: 123 PLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL 182
           PLHLIL HPSF+SR+LP+Q +S S +LILLAAT+H+F+PAL+RPL+F+P+  +W FGP L
Sbjct: 120 PLHLILRHPSFISRDLPIQSISASYRLILLAATSHSFSPALSRPLVFNPLSGSWAFGPPL 179

Query: 183 VTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE------KNS----RWEK 232
            TPRRWCAAG + G VYVASGIGSQ+++DVAKS+EKWDL N +      +N     +W K
Sbjct: 180 ATPRRWCAAGSAHGTVYVASGIGSQYNTDVAKSLEKWDLQNQKAMISNIRNKTTTWKWVK 239

Query: 233 TGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGP 289
             ELK+GRFSR+AIDAVGW+GKLC+VN+KG    EG VYD   +TW+DM +GMV GWRGP
Sbjct: 240 VKELKNGRFSRDAIDAVGWRGKLCMVNMKGDAAKEGIVYDTEKDTWEDMPQGMVAGWRGP 299

Query: 290 VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349
           VAAMDEEV+Y +DE    L +YD   D W+ +++S+ L GA+  AAGGGRVC +C     
Sbjct: 300 VAAMDEEVMYVVDEAKGVLRKYDPERDCWERIMESERLIGAQQIAAGGGRVCVICGGSTE 359

Query: 350 IVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
           +VV+DV A     ++VV+TP GFEA  +HI+PR+S+
Sbjct: 360 LVVLDVVALPV-RLWVVETPPGFEAFRIHILPRISR 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582211|ref|XP_002531898.1| conserved hypothetical protein [Ricinus communis] gi|223528465|gb|EEF30497.1| conserved hypothetical protein [Ricinus communis]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/395 (57%), Positives = 280/395 (70%), Gaps = 36/395 (9%)

Query: 9   SSKRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCH 68
           ++KRQ+LT+    QP                  L+PGLPDH+A LCLS V PS+L++VCH
Sbjct: 14  TAKRQRLTRLHQQQP-----------------DLIPGLPDHVAQLCLSLVPPSLLYSVCH 56

Query: 69  SWRRLIYSPSFPPFLSLYALFSP----KSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPL 124
           SWRRLIYSP+FPPFLSLYA+ S     +    S  I  F FDP+SSTWD LP PPPDPPL
Sbjct: 57  SWRRLIYSPAFPPFLSLYAVLSSINTDRYGDCSNSIKFFNFDPISSTWDLLPPPPPDPPL 116

Query: 125 HLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT 184
             I+ HPSF+SR+LP+Q V++SG LILLAATT NF PAL+RP IF+P+ R W+FGP L T
Sbjct: 117 RPIIRHPSFISRHLPIQSVTVSGHLILLAATTDNFYPALSRPFIFNPVSRRWSFGPPLTT 176

Query: 185 PRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSR---------WEKTG 234
           PRRWCAAG  +   VYVASGIGSQFS+D+AKSVEKW+ +  EK +R         WEK  
Sbjct: 177 PRRWCAAGAINNSTVYVASGIGSQFSADIAKSVEKWEFLRDEKRTRSSNQSCLWKWEKVK 236

Query: 235 ELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVA 291
            LKDGRFSR+AIDA+GW+GKLC+VNVKG    EG VYD   + W+DM  GM+ GW+GPVA
Sbjct: 237 GLKDGRFSRDAIDAIGWRGKLCMVNVKGDAAKEGLVYDTKKDLWEDMPIGMLAGWKGPVA 296

Query: 292 AMDEEVLYGIDENSCTLSRYDEVMDDWKEVV-KSDLLKGARHAAAGGGRVCAVCENGGGI 350
           AMDEEV+Y +DE    L +YD   D W+ ++ +S+  KGA+  AA GGRVC VCE G GI
Sbjct: 297 AMDEEVMYVVDEVKGALRKYDPSKDVWENIITESENFKGAQQIAAAGGRVCVVCEGGNGI 356

Query: 351 VVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
            VVDV AA    ++ +DTP GFEA++VHI+PRMSK
Sbjct: 357 AVVDVVAAPV-RLWTMDTPPGFEAVAVHILPRMSK 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120934|ref|XP_002330862.1| predicted protein [Populus trichocarpa] gi|222872684|gb|EEF09815.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/396 (55%), Positives = 280/396 (70%), Gaps = 21/396 (5%)

Query: 9   SSKRQKLTQTLTTQPLAQDQDKAQDDDGDDH--QPLLPGLPDHIAHLCLSHVHPSILHNV 66
           +S +   T T T  P A+ + K   D   +H  QPL+PGL DH+A L LS VHPS L+ V
Sbjct: 3   NSIQTSTTDTATKHPSAK-RRKLTTDQHQNHQEQPLIPGLTDHVAQLSLSLVHPSTLYPV 61

Query: 67  CHSWRRLIYSPSFPPFLSLYALFSPKSN----SSSTPIHLFTFDPVSSTWDPLPRPPPDP 122
           CHSWRRLIYS SFPPFLSLYA+ S  +     S++ PI  F FDP+SS WD LP PPPDP
Sbjct: 62  CHSWRRLIYSLSFPPFLSLYAVLSSTNINHRLSNNNPIQSFNFDPISSKWDSLPPPPPDP 121

Query: 123 PLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL 182
           PLHL+L HP F+SR+LP+Q +S  G+LIL+AAT+HNF+PAL+RPL+F+P+   W FGP L
Sbjct: 122 PLHLLLRHPCFISRDLPIQSISACGRLILIAATSHNFSPALSRPLVFNPLSGVWGFGPPL 181

Query: 183 VTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLM----------NGEKNSRWEK 232
            TPRRWCAAG ++  VYVASGIGSQF++DV+KSVEKWDL           N     +WEK
Sbjct: 182 TTPRRWCAAGSAKDTVYVASGIGSQFNTDVSKSVEKWDLQSKNVGISTIANKTITWKWEK 241

Query: 233 TGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGP 289
              LKDGRF R+AIDAVGW+GKLC+VN+KG    EG VYD   + W++M EGM+ GWRGP
Sbjct: 242 VKGLKDGRFCRDAIDAVGWRGKLCMVNMKGDAPKEGLVYDTEKDAWENMPEGMLAGWRGP 301

Query: 290 VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG 349
           VA+MDEE ++ +DE    L +YD   D W+ +++S+ L GA+  AAGGGRVC +      
Sbjct: 302 VASMDEETMFVVDEARGVLRKYDPEKDYWEHMMESERLVGAQKIAAGGGRVCVIRGCSTE 361

Query: 350 IVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
           IVV+DV AA    ++VV TP GFEAL++HI+PRMS+
Sbjct: 362 IVVLDV-AALPVKLWVVKTPPGFEALAIHILPRMSR 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495256|ref|XP_003516495.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/361 (57%), Positives = 256/361 (70%), Gaps = 10/361 (2%)

Query: 26  QDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSL 85
           + Q + Q     + QPL+PGLPDHIA LCLS ++P +L ++ HSWRRLIYSPSFPPF SL
Sbjct: 18  KRQKQEQHIHQQEEQPLIPGLPDHIAQLCLSSINPCLLFSISHSWRRLIYSPSFPPFFSL 77

Query: 86  YALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSL 145
           YA+ S   + SS  I   TFDP+S+TW PLP  PP   L L  H  SFLSRNL VQ VS 
Sbjct: 78  YAILS--HSHSSAVIQFHTFDPISATWLPLPPHPPLHHLLLRRHP-SFLSRNLSVQSVSA 134

Query: 146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIG 205
           + +L+LLAATTHN +PAL RPLIF P+ +TW+FGP L TPRRWCA G     VYVASGIG
Sbjct: 135 ANRLVLLAATTHNLSPALPRPLIFHPLTKTWSFGPTLSTPRRWCALGSLGPTVYVASGIG 194

Query: 206 SQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--- 262
           S FS  VA+S++KW+L N   N+ WEK  ELKDGRFSREAIDAVGWK KLC+VNVKG   
Sbjct: 195 SHFSIHVARSLQKWNLQN--PNAVWEKKTELKDGRFSREAIDAVGWKQKLCMVNVKGDAA 252

Query: 263 AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVV 322
            EG VYDV  + W +M EGM+ GWRGPVAAM+EEV+Y +DE    L RY E  D W+E++
Sbjct: 253 KEGVVYDVAEDAWKEMPEGMLHGWRGPVAAMEEEVMYVVDEAKGVLRRYVEEEDSWEEIL 312

Query: 323 KSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPR 382
           +++ LKGA    A  G++C V  +  GI VVDV AA +P I+ V  P GFE ++VHI+PR
Sbjct: 313 ENERLKGAEKIVAWRGKLCVVSAS-SGISVVDV-AAPSPRIWSVRLPEGFEPVTVHILPR 370

Query: 383 M 383
           +
Sbjct: 371 I 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484577|ref|XP_003612576.1| F-box/kelch-repeat protein SKIP25 [Medicago truncatula] gi|355513911|gb|AES95534.1| F-box/kelch-repeat protein SKIP25 [Medicago truncatula]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/345 (60%), Positives = 250/345 (72%), Gaps = 12/345 (3%)

Query: 42  LLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIH 101
           L+PGLPDHIA LCLS ++PS+L  VCHSWRRLIYSPSFPPF SLYA+ SP  +  S  I 
Sbjct: 41  LIPGLPDHIAQLCLSSINPSLLFKVCHSWRRLIYSPSFPPFFSLYAILSPPKSHHSHSIQ 100

Query: 102 LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNP 161
              FDP+S+TW  LP   P P  H++LHHPSFLSRNL VQ +S+S  LILLAATTHN  P
Sbjct: 101 FHNFDPISNTWKILPP--PPPLHHILLHHPSFLSRNLSVQSISVSDNLILLAATTHNLTP 158

Query: 162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL 221
           AL+ PLIF+P  + W+ GP L  PRRWCA G S G VYVASGIGS FS DVAKS+EKWD 
Sbjct: 159 ALSHPLIFNP-SQGWSVGPALTNPRRWCALGTSEGMVYVASGIGSHFSVDVAKSIEKWDP 217

Query: 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDM 278
           +N   +  WEK  ++KDGRFSREA+DAVGW+GKL +VNVKG    EG VYDV  +TW +M
Sbjct: 218 IN---DPIWEKKTDMKDGRFSREAVDAVGWRGKLYMVNVKGDAAKEGVVYDVEEDTWKEM 274

Query: 279 REGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG 338
            EGM+ G+RGPVAAM+EEV+Y +DE    LSRY+   D W+++ +S  LKGA    A  G
Sbjct: 275 PEGMLLGFRGPVAAMEEEVMYVVDEAKGILSRYNSEDDIWEKIFESQRLKGAEQMVAKQG 334

Query: 339 RVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRM 383
           R+C V  +  GI VVDV  A  P I VV+ P GFEA++VH++PRM
Sbjct: 335 RICVV--STAGISVVDV-VAVPPRISVVELPEGFEAVAVHVLPRM 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146126|ref|XP_002325889.1| predicted protein [Populus trichocarpa] gi|222862764|gb|EEF00271.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/372 (50%), Positives = 243/372 (65%), Gaps = 15/372 (4%)

Query: 27  DQDKAQDDDGDD--HQPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLS 84
           +  K + ++  D  ++ LLPGLPDH++  CL+ + PSIL +V H+WRRL+YS  F PF S
Sbjct: 6   NNKKTRKNELPDTLNETLLPGLPDHLSQNCLTSLPPSILFSVSHAWRRLLYSSLFAPFFS 65

Query: 85  LYALFSPKSNSSSTP---------IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLS 135
           LYAL S  S+  +T          I L +FDP+SS W  +P  P DPPLHL+  HPSFLS
Sbjct: 66  LYALLSASSSYPTTKDNQVDIIRSIELMSFDPISSLWRSVPSIPKDPPLHLLHRHPSFLS 125

Query: 136 RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSR 195
           R L VQ +++S  L+L++ TTH F PAL+RPL+F P  + W FGP   +PRRWCA G   
Sbjct: 126 RKLSVQSLTVSNHLVLISGTTHQFVPALSRPLVFHPESKKWFFGPPFTSPRRWCATGSVH 185

Query: 196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKL 255
           G VYVASG+G ++S +VA+S+E+WD      + RWE    LKDGRFSRE I A+G+KGKL
Sbjct: 186 GRVYVASGVGPRYSGEVARSMEQWDFSQQGNHWRWENMAPLKDGRFSREPIGAIGYKGKL 245

Query: 256 CLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYD 312
            +VNVKG    EG VYDV  N W+DM  GM+ GW GP A M+E+ +Y ++E +  LS YD
Sbjct: 246 YMVNVKGNAPKEGLVYDVEENQWNDMPRGMLAGWNGPAATMNEDAIYVVNEVTGALSEYD 305

Query: 313 EVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGF 372
              D WK+V++   LK A   AAG GRVC VC NG  IVVVDV A  A   +VV+ P G 
Sbjct: 306 CKNDCWKKVIELPELKLAEQIAAGRGRVCVVCANGETIVVVDVMARPA-RFWVVEPPQGQ 364

Query: 373 EALSVHIMPRMS 384
           +   +HI+PRMS
Sbjct: 365 QVAGLHILPRMS 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456923|ref|XP_004146198.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cucumis sativus] gi|449521327|ref|XP_004167681.1| PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/349 (59%), Positives = 256/349 (73%), Gaps = 10/349 (2%)

Query: 40  QPLLPGLPDHIAHLCLSHVHPSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTP 99
            PLLPGLPDH+A  CLSHV PS+L +V  SWRRL+YSPSFPPF SLYA      +SSS  
Sbjct: 28  SPLLPGLPDHVAQFCLSHVPPSLLFSVSRSWRRLLYSPSFPPFSSLYA----LLSSSSNS 83

Query: 100 IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF 159
           +  F FDP+SS W PLP PP  P  HL++HHPSFLSR+LPVQ +++SG L+LLAATT+N 
Sbjct: 84  LDFFNFDPISSKWSPLPPPPNSPSSHLLIHHPSFLSRHLPVQSLTVSGHLLLLAATTYNL 143

Query: 160 NPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW 219
            PAL RPL+F P   +W   P L TPRRWCAAG   G+VYVASGIGS FS+DVA+SVE+W
Sbjct: 144 LPALPRPLLFSPFSNSWRLAPPLPTPRRWCAAGALHGSVYVASGIGSFFSTDVARSVERW 203

Query: 220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWD 276
           D  +   +  WEK   LKDG+FSR+AIDAVGWKGKLC+VNVKG    EG VYD+  + W+
Sbjct: 204 DFKSNGADG-WEKVSGLKDGKFSRDAIDAVGWKGKLCMVNVKGHALKEGLVYDLEKDEWE 262

Query: 277 DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG 336
           +M EGM+ GWRGPVAAMDE+ +Y +DE S +L RYD   D W+EV++S+ LKGA   AAG
Sbjct: 263 EMPEGMIEGWRGPVAAMDEKDMYVVDEISGSLRRYDSEKDFWEEVMESNRLKGAVQMAAG 322

Query: 337 GGRVCAVCENG-GGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMS 384
           GGRVC VC    G IVVVDV  + A  ++V  TP G E ++VH++PRM+
Sbjct: 323 GGRVCVVCGGSRGEIVVVDVVTSPA-RLWVEPTPPGTEVVAVHVLPRMN 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846538|ref|XP_002891150.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336992|gb|EFH67409.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 195/368 (52%), Positives = 255/368 (69%), Gaps = 23/368 (6%)

Query: 36  GDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSN 94
           G+++  L+ GLPDHI+ +CLS V+ PS+L  VC  WRRL+YSP FP F SLYALF    +
Sbjct: 19  GNENSALIEGLPDHISEICLSKVNRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFV---D 75

Query: 95  SSSTP------IHLFTFDPVSSTWDPLPRPPPDPPLHLILH-HPSFLSRNLPVQLVSLSG 147
           S+S P      +    F+PVS  W PLP PPPD PLH IL+ HPSF+S NLP+Q VS +G
Sbjct: 76  STSDPGRVNPSVRFMCFNPVSPKWYPLPPPPPDLPLHRILYRHPSFISFNLPIQCVSAAG 135

Query: 148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQ 207
           KLIL+A +    +PA++ PLIFDPI  +W+ GP++ +PRRWCA G   GA+Y+ASGI SQ
Sbjct: 136 KLILIAGSNQQLSPAISHPLIFDPISSSWSSGPQIGSPRRWCATGACDGAIYIASGISSQ 195

Query: 208 FSSDVAKSVEKWDLMNGEKNSR---WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-- 262
           FSS VAKS+EK DL +  +N+R   WEK  +++D RFSREAIDAVG++ KL +VNVKG  
Sbjct: 196 FSSTVAKSIEKLDLTDQNRNNRRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDA 255

Query: 263 -AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEV 321
             EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY +DE   T+ +YD+   +W+EV
Sbjct: 256 IKEGAIYDVVKDDWEAMPEEMLVGWRGPVAAMEEEILYSVDERRGTVRKYDDENREWREV 315

Query: 322 VKSD----LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSV 377
              D    LLKGA    A  G++C V  + G IVV DV A  A  I+ V+ P G E +SV
Sbjct: 316 AVVDGGEELLKGATQVTADSGKLCVVTVD-GKIVVADVVAEPA-KIWNVEIPDGLEPVSV 373

Query: 378 HIMPRMSK 385
           H++PRMS+
Sbjct: 374 HVLPRMSQ 381

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221685|ref|NP_174420.1| F-box/kelch-repeat protein SKIP25 [Arabidopsis thaliana] gi|75151119|sp|Q8GX29.1|SKI25_ARATH RecName: Full=F-box/kelch-repeat protein SKIP25; AltName: Full=SKP1-interacting partner 25 gi|26451966|dbj|BAC43075.1| unknown protein [Arabidopsis thaliana] gi|28950983|gb|AAO63415.1| At1g31350 [Arabidopsis thaliana] gi|332193224|gb|AEE31345.1| F-box/kelch-repeat protein SKIP25 [Arabidopsis thaliana]

 Score =  347 bits (889), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 263/390 (67%), Gaps = 20/390 (5%)

Query: 11  KRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHS 69
           +R+ ++ T    P A+   + +   G+++  L+ GLPDHI+ +CLS VH PS+L  VC  
Sbjct: 7   RRESMSTTAAESPPAK---RRRTVTGNENSALIEGLPDHISEICLSLVHRPSLLSAVCTR 63

Query: 70  WRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTWDPLPRPPPDPPLHL 126
           WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W PLP PPPDPPLH 
Sbjct: 64  WRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHR 123

Query: 127 ILH-HPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185
           IL+ HPSF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +P
Sbjct: 124 ILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSP 183

Query: 186 RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFS 242
           RRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFS
Sbjct: 184 RRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFS 243

Query: 243 REAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY 299
           REAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY
Sbjct: 244 REAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPMPEEMLVGWRGPVAAMEEEILY 303

Query: 300 GIDENSCTLSRYDEVMDDWK----EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
            +DE   T+ +YD+   +W+         ++LKGA    A  G++C V  + G IVVVDV
Sbjct: 304 SVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVTADSGKLCVVTGD-GKIVVVDV 362

Query: 356 KAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
            A  A  I+ V+ P G E +SVH++PRMS+
Sbjct: 363 AAEPA-KIWNVEIPDGLEPVSVHVLPRMSQ 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6692128|gb|AAF24593.1|AC007654_9 T19E23.14 [Arabidopsis thaliana]

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 263/390 (67%), Gaps = 20/390 (5%)

Query: 11  KRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVH-PSILHNVCHS 69
           +R+ ++ T    P A+   + +   G+++  L+ GLPDHI+ +CLS VH PS+L  VC  
Sbjct: 58  RRESMSTTAAESPPAK---RRRTVTGNENSALIEGLPDHISEICLSLVHRPSLLSAVCTR 114

Query: 70  WRRLIYSPSFPPFLSLYALFSPKSNSS---STPIHLFTFDPVSSTWDPLPRPPPDPPLHL 126
           WRRL+YSP FP F SLYALF   ++ +   +  +    F+PVSS W PLP PPPDPPLH 
Sbjct: 115 WRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCFNPVSSKWYPLPPPPPDPPLHR 174

Query: 127 ILH-HPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP 185
           IL+ HPSF+S NLP+Q VS +GKLIL+A +    +PA++ PLIFDPI  +W+ GP + +P
Sbjct: 175 ILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAISHPLIFDPISSSWSSGPRIGSP 234

Query: 186 RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS---RWEKTGELKDGRFS 242
           RRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL    +N+    WEK  +++D RFS
Sbjct: 235 RRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQNRNNHRFNWEKLRDMRDLRFS 294

Query: 243 REAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY 299
           REAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M E M+ GWRGPVAAM+EE+LY
Sbjct: 295 REAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPMPEEMLVGWRGPVAAMEEEILY 354

Query: 300 GIDENSCTLSRYDEVMDDWK----EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV 355
            +DE   T+ +YD+   +W+         ++LKGA    A  G++C V  + G IVVVDV
Sbjct: 355 SVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVTADSGKLCVVTGD-GKIVVVDV 413

Query: 356 KAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
            A  A  I+ V+ P G E +SVH++PRMS+
Sbjct: 414 AAEPA-KIWNVEIPDGLEPVSVHVLPRMSQ 442

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2197540	395	KUF1 "KAR-UP F-box 1" [Arabido	0.863	0.845	0.478	9e-77
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.441	0.394	0.239	1.9e-06
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.635	0.661	0.246	6.2e-05

TAIR|locus:2197540 KUF1 "KAR-UP F-box 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 168/351 (47%), Positives = 220/351 (62%)

Query:    50 IAHLCLSHVH-PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSS--TP-IHLFTF 105
             I+ +CLS VH PS+L  VC  WRRL+YSP FP F SLYALF   ++ +    P +    F
Sbjct:    43 ISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVNPSVRFMCF 102

Query:   106 DPVSSTW-DXXXXXXXXXXXXXXXXXXSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
             +PVSS W                    SF+S NLP+Q VS +GKLIL+A +    +PA++
Sbjct:   103 NPVSSKWYPLPPPPPDPPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSNQQLSPAIS 162

Query:   165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224
              PLIFDPI  +W+ GP + +PRRWCA G   GA+Y+ASGI SQFSS VAKSVEK DL   
Sbjct:   163 HPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSVEKLDLTEQ 222

Query:   225 EKNSR---WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDM 278
              +N+    WEK  +++D RFSREAIDAVG++ KL +VNVKG    EGA+YDVV + W+ M
Sbjct:   223 NRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIYDVVKDDWEPM 282

Query:   279 REGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVK----SDLLKXXXXXX 334
              E M+ GWRGPVAAM+EE+LY +DE   T+ +YD+   +W+EVV      ++LK      
Sbjct:   283 PEEMLVGWRGPVAAMEEEILYSVDERRGTVRKYDDEKREWREVVVVEGGEEMLKGATQVT 342

Query:   335 XXXXXXXXXXENGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRMSK 385
                        +G  IVVVDV A  A  I+ V+ P G E +SVH++PRMS+
Sbjct:   343 ADSGKLCVVTGDGK-IVVVDVAAEPAK-IWNVEIPDGLEPVSVHVLPRMSQ 391

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 44/184 (23%), Positives = 75/184 (40%)

Query:   145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGI 204
             LSG  + L         ++ R + ++     W   P+++  R +         +YVA G 
Sbjct:   176 LSGCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGE 235

Query:   205 GSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAE 264
                    + +S E +D     KN RW    ++         +  V +  K  L  +   +
Sbjct:   236 CEGIQRTL-RSAEVYD---PNKN-RWSFIADMSTAMVP---LIGVVYDKKWFLKGLGSHQ 287

Query:   265 ---GAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSRYDEVMDDWKE 320
                   YD   N+W  + +GMV GWR P  +++   LYG+D  + C L  +DE  D W +
Sbjct:   288 LVMSEAYDPEVNSWSPVSDGMVAGWRNPCTSLNGR-LYGLDCRDGCKLRVFDESTDSWNK 346

Query:   321 VVKS 324
              + S
Sbjct:   347 FMDS 350

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 72/292 (24%), Positives = 111/292 (38%)

Query:    50 IAHLCLSHV-HP--SILHNVCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFD 106
             IA LCL  + +P  ++  +V  SW + I +P F        LFS +S S S+P +LF F 
Sbjct:    36 IAELCLLRLPYPYHALYRSVSSSWNKTITNPRF--------LFSKQSLSISSP-YLFVFA 86

Query:   107 PVSST----WDXXXXXXXXXXXXXXXXXXSFLSRNLPVQLVSLS----GKLILLAATTHN 158
                ST    W                   SF   + P  L   S    GKL +L     N
Sbjct:    87 FNKSTARIQWQSLDLASGRWFVLPPMPN-SFTKISSPHALSCASMPRQGKLFVLGGGDVN 145

Query:   159 FNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASG-IGSQFSSDVAKSVE 217
              +      +++  +   W+    +++PR +  +G   G +    G +G   + +    VE
Sbjct:   146 RSA-----VVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGG--NGEATTEVE 198

Query:   218 KWDLMNGEKNSRWEKTGELK------DGR-FSREAIDAVGWKGKLCLVNVKGAEGAVYDV 270
              +D      N  W    +L       D     +E     GW        +    G VYD 
Sbjct:   199 SYD----PDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPM----GQVYDS 250

Query:   271 VANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-CTLSRYDEVMDDWKEV 321
                TW +M  GM  GW G V+ +  + L+ I E+    +  Y    D W+ V
Sbjct:   251 DEGTWREMSGGMKEGWTG-VSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYV 301


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      387       316   0.00082  116 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  243 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.16u 0.09s 23.25t   Elapsed:  00:00:04
  Total cpu time:  23.16u 0.09s 23.25t   Elapsed:  00:00:04
  Start:  Sat May 11 14:41:32 2013   End:  Sat May 11 14:41:36 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GX29	SKI25_ARATH	No assigned EC number	0.5025	0.9560	0.9367	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091407 hypothetical protein (397 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.98
PLN02193	470	nitrile-specifier protein	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
PHA03098	534	kelch-like protein; Provisional	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.96
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.95
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.88
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.87
KOG1230	521	consensus Protein containing repeated kelch motifs	99.83
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.82
KOG1230	521	consensus Protein containing repeated kelch motifs	99.8
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.71
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.63
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.57
PF13964	50	Kelch_6: Kelch motif	99.17
PF13964	50	Kelch_6: Kelch motif	99.08
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.08
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.88
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.83
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.78
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.74
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.74
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.73
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.72
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.69
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.67
smart00612	47	Kelch Kelch domain.	98.64
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.63
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.53
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.53
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	98.48
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.47
smart00612	47	Kelch Kelch domain.	98.36
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.36
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.19
PLN02772	398	guanylate kinase	98.07
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.04
PF13854	42	Kelch_5: Kelch motif	98.01
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.91
PLN02772	398	guanylate kinase	97.89
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.8
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.78
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.64
PF13854	42	Kelch_5: Kelch motif	97.63
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.47
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.28
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.24
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.24
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.2
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.16
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.12
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.03
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.0
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.97
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.94
PRK11028	330	6-phosphogluconolactonase; Provisional	96.9
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.72
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.69
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.59
KOG2055	514	consensus WD40 repeat protein [General function pr	96.58
KOG2055	514	consensus WD40 repeat protein [General function pr	96.53
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.52
KOG0296	399	consensus Angio-associated migratory cell protein	96.5
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.32
PTZ00420	568	coronin; Provisional	96.25
PTZ00421	493	coronin; Provisional	96.24
PRK11028	330	6-phosphogluconolactonase; Provisional	96.23
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.23
PLN00181	793	protein SPA1-RELATED; Provisional	96.17
KOG0279	315	consensus G protein beta subunit-like protein [Sig	96.15
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.11
PRK04792	448	tolB translocation protein TolB; Provisional	96.07
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.89
KOG0266	456	consensus WD40 repeat-containing protein [General	95.72
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	95.72
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	95.7
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.38
PRK04043	419	tolB translocation protein TolB; Provisional	95.3
smart00284	255	OLF Olfactomedin-like domains.	95.25
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.23
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.16
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	95.13
PLN00181	793	protein SPA1-RELATED; Provisional	95.0
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.93
PRK02889	427	tolB translocation protein TolB; Provisional	94.81
PRK04922	433	tolB translocation protein TolB; Provisional	94.77
PRK00178	430	tolB translocation protein TolB; Provisional	94.7
KOG0286	343	consensus G-protein beta subunit [General function	94.67
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.67
KOG0266	456	consensus WD40 repeat-containing protein [General	94.66
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.62
PRK05137	435	tolB translocation protein TolB; Provisional	94.35
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.26
PRK13684	334	Ycf48-like protein; Provisional	94.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	94.06
KOG0293	519	consensus WD40 repeat-containing protein [Function	94.03
KOG0296	399	consensus Angio-associated migratory cell protein	93.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	93.92
PRK04792	448	tolB translocation protein TolB; Provisional	93.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	93.89
PF03089	337	RAG2: Recombination activating protein 2; InterPro	93.76
KOG0315	311	consensus G-protein beta subunit-like protein (con	93.6
PRK13684	334	Ycf48-like protein; Provisional	93.6
PRK00178	430	tolB translocation protein TolB; Provisional	93.57
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	93.51
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.49
KOG0315	311	consensus G-protein beta subunit-like protein (con	93.4
PRK05137	435	tolB translocation protein TolB; Provisional	93.21
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.11
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.01
KOG0286	343	consensus G-protein beta subunit [General function	92.99
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.98
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	92.75
PF03089	337	RAG2: Recombination activating protein 2; InterPro	92.69
KOG0647	347	consensus mRNA export protein (contains WD40 repea	92.5
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	92.44
KOG0649	325	consensus WD40 repeat protein [General function pr	92.39
PRK04922	433	tolB translocation protein TolB; Provisional	92.3
KOG0316	307	consensus Conserved WD40 repeat-containing protein	92.18
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.17
KOG0646	476	consensus WD40 repeat protein [General function pr	91.68
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	91.53
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.44
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	91.08
PRK03629	429	tolB translocation protein TolB; Provisional	90.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.7
KOG2321	703	consensus WD40 repeat protein [General function pr	90.42
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	90.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	90.15
COG4946	668	Uncharacterized protein related to the periplasmic	90.01
COG4946	668	Uncharacterized protein related to the periplasmic	89.72
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	89.65
KOG0279	315	consensus G protein beta subunit-like protein [Sig	89.47
PRK04043	419	tolB translocation protein TolB; Provisional	89.27
KOG0289	506	consensus mRNA splicing factor [General function p	89.14
PRK02889	427	tolB translocation protein TolB; Provisional	89.03
smart00284	255	OLF Olfactomedin-like domains.	88.37
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	87.57
KOG2048	691	consensus WD40 repeat protein [General function pr	87.48
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.4
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	87.2
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	87.08
PTZ00421	493	coronin; Provisional	87.05
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.68
KOG0293	519	consensus WD40 repeat-containing protein [Function	86.1
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	86.0
KOG0639	705	consensus Transducin-like enhancer of split protei	85.41
PRK03629	429	tolB translocation protein TolB; Provisional	84.33
KOG0318	603	consensus WD40 repeat stress protein/actin interac	84.08
PRK01742	429	tolB translocation protein TolB; Provisional	83.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	82.93
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	82.89
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	82.85
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	82.23
PF13859	310	BNR_3: BNR repeat-like domain; PDB: 3B69_A.	82.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	81.64
KOG0289	506	consensus mRNA splicing factor [General function p	81.47
KOG0294	362	consensus WD40 repeat-containing protein [Function	81.4
KOG0294	362	consensus WD40 repeat-containing protein [Function	80.72

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=307.96  Aligned_cols=240  Identities=12%  Similarity=0.199  Sum_probs=207.7

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP  180 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~  180 (387)
                      .+..||+.+++|..++++|.+               +..+++++++++||++||.... ....+.+++|||.+++|.+++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~---------------r~~~~~a~l~~~IYviGG~~~~-~~~~~~v~~Yd~~~n~W~~~~  336 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNH---------------IINYASAIVDNEIIIAGGYNFN-NPSLNKVYKINIENKIHVELP  336 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcc---------------ccceEEEEECCEEEEEcCCCCC-CCccceEEEEECCCCeEeeCC
Confidence            467899999999999999873               3457889999999999996422 235678999999999999999


Q ss_pred             CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee
Q 016552          181 ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV  260 (387)
Q Consensus       181 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg  260 (387)
                      +|+.+|..+++++++++||++||.+.   ....+++++||+.+++    |..+++||.++..   +++++++|+||++||
T Consensus       337 ~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~----W~~~~~mp~~r~~---~~~~~~~g~IYviGG  406 (557)
T PHA02713        337 PMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDK----WKMLPDMPIALSS---YGMCVLDQYIYIIGG  406 (557)
T ss_pred             CCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCe----EEECCCCCccccc---ccEEEECCEEEEEeC
Confidence            99999999999999999999999854   2346789999999999    9999999988754   678899999999998


Q ss_pred             eC-----------------------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC------CeEEEE
Q 016552          261 KG-----------------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS------CTLSRY  311 (387)
Q Consensus       261 ~~-----------------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~------~~l~~y  311 (387)
                      ..                       +.+++|||++++|+.+++ |+.++..+++++.+|+||++||.+      ..+.+|
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             CCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence            53                       358999999999999987 777777888899999999999853      247899


Q ss_pred             eCCC-CceeEccccccccCceEEEEeCCeEEEEecCCC--eEEEEeccCCCCCCceEEeCCCC
Q 016552          312 DEVM-DDWKEVVKSDLLKGARHAAAGGGRVCAVCENGG--GIVVVDVKAAAAPTIFVVDTPLG  371 (387)
Q Consensus       312 d~~~-~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~--~i~~~d~~~~~~~~~W~~~~p~~  371 (387)
                      ||++ ++|+.+.++|..+..+++++++|+||++||..+  .+..||+.+.    +|...+|..
T Consensus       486 dp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~----~W~~~~~~~  544 (557)
T PHA02713        486 NTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY----EWNHICHQH  544 (557)
T ss_pred             cCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc----cccchhhhc
Confidence            9999 899999999998889999999999999998644  7899999998    999866644

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=8.5e-37  Score=301.96  Aligned_cols=293  Identities=19%  Similarity=0.248  Sum_probs=237.6

Q ss_pred             CCCCChHHHHHHHhhhcCchhhh-------hhhHhhhhhhcCCC------CCce----eeEEeecCCCCCCCCCCeEEEE
Q 016552           42 LLPGLPDHIAHLCLSHVHPSILH-------NVCHSWRRLIYSPS------FPPF----LSLYALFSPKSNSSSTPIHLFT  104 (387)
Q Consensus        42 ~~~~LPddl~~~iL~rLPl~~~r-------~VcK~W~~li~~~~------f~~~----~~l~~~~~~~~~~~~~~~~~~~  104 (387)
                      -.|-||...+.++....++.+..       .-.|.|..+.....      -.+.    -.++.+++... .......+..
T Consensus       227 r~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~-~~~~~~~ve~  305 (571)
T KOG4441|consen  227 RLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNR-QGQSLRSVEC  305 (571)
T ss_pred             CccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCC-CCcccceeEE
Confidence            34777777777777666622111       12224544443211      1011    24666665310 0122345889


Q ss_pred             EeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC
Q 016552          105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT  184 (387)
Q Consensus       105 ~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~  184 (387)
                      |||.++.|..+++||.+               |..+++++++|.||++||.+. ....++.+++|||.+++|..+|+|+.
T Consensus       306 yd~~~~~w~~~a~m~~~---------------r~~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~  369 (571)
T KOG4441|consen  306 YDPKTNEWSSLAPMPSP---------------RCRVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNT  369 (571)
T ss_pred             ecCCcCcEeecCCCCcc---------------cccccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccC
Confidence            99999999999999973               445889999999999999873 25677899999999999999999999


Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC--
Q 016552          185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--  262 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~--  262 (387)
                      +|..+++++++|+||++||.+.   ...++++|.||+.+++    |..+++|+..+..   +.+++++|+||++||.+  
T Consensus       370 ~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~----W~~va~m~~~r~~---~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  370 KRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNK----WTPVAPMLTRRSG---HGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             ccccceeEEECCEEEEEecccc---ccccccEEEecCCCCc----ccccCCCCcceee---eEEEEECCEEEEEcCcCCC
Confidence            9999999999999999999985   4577899999999999    9999999986654   88999999999999955  


Q ss_pred             ----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeCCCCceeEccccccccCceEE
Q 016552          263 ----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSRYDEVMDDWKEVVKSDLLKGARHA  333 (387)
Q Consensus       263 ----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~-----~l~~yd~~~~~W~~v~~~~~~~~~~~~  333 (387)
                          +++++|||.+++|+.+++ |...+.+.++++.+++||++||.++     ++.+||+++++|+.+..+...+...++
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~  518 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV  518 (571)
T ss_pred             ccccceEEEEcCCCCceeecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence                789999999999999998 8888888889999999999998654     489999999999999999999999999


Q ss_pred             EEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552          334 AAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       334 ~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~  366 (387)
                      +..+++||++||..     +.+.+||+.+.    +|+.
T Consensus       519 ~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d----~W~~  552 (571)
T KOG4441|consen  519 VVLGGKLYAVGGFDGNNNLNTVECYDPETD----TWTE  552 (571)
T ss_pred             EEECCEEEEEecccCccccceeEEcCCCCC----ceee
Confidence            99999999999852     57899999988    9997

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=272.18  Aligned_cols=224  Identities=22%  Similarity=0.331  Sum_probs=192.1

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|+.++... .......++.|||.+++|..+++|...               |.++++++++|.||++||.++  ...+
T Consensus       334 ~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~---------------R~~~~v~~l~g~iYavGG~dg--~~~l  395 (571)
T KOG4441|consen  334 KLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTK---------------RSDFGVAVLDGKLYAVGGFDG--EKSL  395 (571)
T ss_pred             EEEEEccccC-CCcccceEEEecCCCCceeccCCccCc---------------cccceeEEECCEEEEEecccc--cccc
Confidence            5888887410 012234589999999999999999873               667999999999999999886  5677


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      +.+++|||.+++|..+++|+.+|+.+++++.+++||++||.+.  ....++++++|||.+++    |+.+++|+.+|.. 
T Consensus       396 ~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~--~~~~l~sve~YDP~t~~----W~~~~~M~~~R~~-  468 (571)
T KOG4441|consen  396 NSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG--SSNCLNSVECYDPETNT----WTLIAPMNTRRSG-  468 (571)
T ss_pred             ccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC--CccccceEEEEcCCCCc----eeecCCccccccc-
Confidence            8999999999999999999999999999999999999999877  33478999999999999    9999999988765 


Q ss_pred             cceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC-----eEEEEeC
Q 016552          244 EAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC-----TLSRYDE  313 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~-----~l~~yd~  313 (387)
                        +.+++++++||++||+.     ..++.|||++++|+.++. |...+.+.++++.++++|++||.++     .+.+||+
T Consensus       469 --~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp  545 (571)
T KOG4441|consen  469 --FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDP  545 (571)
T ss_pred             --ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-CccccccccEEEECCEEEEEecccCccccceeEEcCC
Confidence              77999999999999976     568999999999999976 7888888889999999999998543     6999999


Q ss_pred             CCCceeEccccccccCceEEEE
Q 016552          314 VMDDWKEVVKSDLLKGARHAAA  335 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~~  335 (387)
                      ++++|+.+..+...+...+++.
T Consensus       546 ~~d~W~~~~~~~~~~~~~~~~~  567 (571)
T KOG4441|consen  546 ETDTWTEVTEPESGRGGAGVAV  567 (571)
T ss_pred             CCCceeeCCCccccccCcceEE
Confidence            9999999998444555444444

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=3.2e-32  Score=271.95  Aligned_cols=233  Identities=18%  Similarity=0.252  Sum_probs=197.7

Q ss_pred             EEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC
Q 016552          102 LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE  181 (387)
Q Consensus       102 ~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~  181 (387)
                      ...|++..++|..++..+.                +..++++++++.||++||.... ....+++++||+.+++|..+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~  328 (534)
T PHA03098        266 YITNYSPLSEINTIIDIHY----------------VYCFGSVVLNNVIYFIGGMNKN-NLSVNSVVSYDTKTKSWNKVPE  328 (534)
T ss_pred             eeecchhhhhcccccCccc----------------cccceEEEECCEEEEECCCcCC-CCeeccEEEEeCCCCeeeECCC
Confidence            4567888888988765543                2236889999999999997542 2345689999999999999999


Q ss_pred             CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeee
Q 016552          182 LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK  261 (387)
Q Consensus       182 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~  261 (387)
                      |+.+|..+++++.+++||++||...   ....+++++||+.+++    |+.+++||.++..   +++++++|+||++||.
T Consensus       329 ~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~lp~~r~~---~~~~~~~~~iYv~GG~  398 (534)
T PHA03098        329 LIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESK----WREEPPLIFPRYN---PCVVNVNNLIYVIGGI  398 (534)
T ss_pred             CCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCc----eeeCCCcCcCCcc---ceEEEECCEEEEECCc
Confidence            9999999999999999999999864   3356789999999999    9999999987654   7788899999999995


Q ss_pred             C------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--------CeEEEEeCCCCceeEccccccc
Q 016552          262 G------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSRYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       262 ~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--------~~l~~yd~~~~~W~~v~~~~~~  327 (387)
                      .      +.+++||+.+++|+.+++ ++.++.++++++.+++||++||.+        ..+++||+++++|+.+..++..
T Consensus       399 ~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~  477 (534)
T PHA03098        399 SKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP  477 (534)
T ss_pred             CCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence            3      679999999999999987 677777888888999999999842        2489999999999999988877


Q ss_pred             cCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552          328 KGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       328 ~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~  366 (387)
                      +..+.++.++|+||++||..     +.+++||+.++    +|..
T Consensus       478 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~----~W~~  517 (534)
T PHA03098        478 RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN----TWTL  517 (534)
T ss_pred             cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC----EEEe
Confidence            77777888999999999853     57899999988    9996

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.6e-31  Score=251.82  Aligned_cols=256  Identities=15%  Similarity=0.211  Sum_probs=190.3

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++...........+++||+.+++|..+++++..|+.           .+.++++++++++||++||...  ....
T Consensus        34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~-----------~~~~~~~~~~~~~iyv~GG~~~--~~~~  100 (341)
T PLN02153         34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI-----------SCLGVRMVAVGTKLYIFGGRDE--KREF  100 (341)
T ss_pred             EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC-----------ccCceEEEEECCEEEEECCCCC--CCcc
Confidence            57888763100001123589999999999998877543221           1346889999999999999754  3456


Q ss_pred             CccEEEeccCCceeeCCCC-----CCCCcceeEEEeCCEEEEEecCCCCC---CCCCcceEEEEECCCCccccCeEEcCC
Q 016552          164 TRPLIFDPICRTWTFGPEL-----VTPRRWCAAGCSRGAVYVASGIGSQF---SSDVAKSVEKWDLMNGEKNSRWEKTGE  235 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~v~~yd~~~~~~~~~W~~~~~  235 (387)
                      +++++||+.+++|+++++|     |.+|..+++++.+++|||+||.....   ....++++++||+.+++    |..+++
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~l~~  176 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK----WVQLPD  176 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe----EeeCCC
Confidence            7899999999999999887     78899999999999999999986421   11245689999999999    999987


Q ss_pred             CCCCCccccceEEEEECCEEEEEeeeC-------------CeEEEEECCCCceeeccc--ccccCCCCcEEEEeCCeEEE
Q 016552          236 LKDGRFSREAIDAVGWKGKLCLVNVKG-------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       236 ~p~~~~~~~~~~~~~~~g~lyv~gg~~-------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~  300 (387)
                      ++.+...|..+.+++++++||+++|..             +++++||+++++|++++.  .+|..+..+++++.+++||+
T Consensus       177 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv  256 (341)
T PLN02153        177 PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII  256 (341)
T ss_pred             CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence            753333344577888999999998742             579999999999999874  24666677788888999999


Q ss_pred             EeCCC--------------CeEEEEeCCCCceeEccc-----cccccCceEE-EEe-CCeEEEEecCC------CeEEEE
Q 016552          301 IDENS--------------CTLSRYDEVMDDWKEVVK-----SDLLKGARHA-AAG-GGRVCAVCENG------GGIVVV  353 (387)
Q Consensus       301 ~~~~~--------------~~l~~yd~~~~~W~~v~~-----~~~~~~~~~~-~~~-~g~i~v~gg~~------~~i~~~  353 (387)
                      +||..              .++++||+++++|+.+..     +|+.+..+++ +.. +++|||+||..      .+++.|
T Consensus       257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~  336 (341)
T PLN02153        257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFY  336 (341)
T ss_pred             ECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEE
Confidence            99842              268999999999999863     2332322223 333 45899999862      456766


Q ss_pred             ecc
Q 016552          354 DVK  356 (387)
Q Consensus       354 d~~  356 (387)
                      ++.
T Consensus       337 ~~~  339 (341)
T PLN02153        337 AVN  339 (341)
T ss_pred             ecc
Confidence            654

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=2.2e-31  Score=251.02  Aligned_cols=233  Identities=13%  Similarity=0.176  Sum_probs=183.2

Q ss_pred             CCCCeecCCCCCCC-CcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC-CC
Q 016552          108 VSSTWDPLPRPPPD-PPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TP  185 (387)
Q Consensus       108 ~~~~W~~l~~~p~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p-~~  185 (387)
                      ...+|.++...... |            ..|.++++++++++||++||.........+++++||+.+++|+++++++ .+
T Consensus         5 ~~~~W~~~~~~~~~~P------------~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p   72 (341)
T PLN02153          5 LQGGWIKVEQKGGKGP------------GPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP   72 (341)
T ss_pred             cCCeEEEecCCCCCCC------------CCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC
Confidence            56779988763211 1            1156688999999999999975432334578999999999999998874 34


Q ss_pred             Cc---ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC-----CCCCccccceEEEEECCEEEE
Q 016552          186 RR---WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL-----KDGRFSREAIDAVGWKGKLCL  257 (387)
Q Consensus       186 r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~-----p~~~~~~~~~~~~~~~g~lyv  257 (387)
                      |.   .+++++++++||++||...   ...++++++||+.+++    |..+++|     |.+|   ..+++++++++||+
T Consensus        73 ~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~----W~~~~~~~~~~~p~~R---~~~~~~~~~~~iyv  142 (341)
T PLN02153         73 RISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNE----WTFLTKLDEEGGPEAR---TFHSMASDENHVYV  142 (341)
T ss_pred             CCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCE----EEEeccCCCCCCCCCc---eeeEEEEECCEEEE
Confidence            43   6778899999999999865   2346789999999999    9999877     5444   34788899999999


Q ss_pred             EeeeC-----------CeEEEEECCCCceeecccc--cccCCCCcEEEEeCCeEEEEeCC-------------CCeEEEE
Q 016552          258 VNVKG-----------AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDEN-------------SCTLSRY  311 (387)
Q Consensus       258 ~gg~~-----------~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~~~-------------~~~l~~y  311 (387)
                      +||..           .++++||+++++|+.++..  .+..+.++++++.+++||+++|.             ...+++|
T Consensus       143 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~y  222 (341)
T PLN02153        143 FGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFF  222 (341)
T ss_pred             ECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEE
Confidence            99964           3689999999999998752  12455677788889999999763             2468999


Q ss_pred             eCCCCceeEccc---cccccCceEEEEeCCeEEEEecCC--------------CeEEEEeccCCCCCCceEE
Q 016552          312 DEVMDDWKEVVK---SDLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       312 d~~~~~W~~v~~---~~~~~~~~~~~~~~g~i~v~gg~~--------------~~i~~~d~~~~~~~~~W~~  366 (387)
                      |+++++|+++..   +|..+..++++.++++|||+||..              +++++||+.+.    .|+.
T Consensus       223 d~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~----~W~~  290 (341)
T PLN02153        223 DPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL----VWEK  290 (341)
T ss_pred             EcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc----EEEe
Confidence            999999999874   455667788899999999999941              37899999987    9994

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=2.5e-31  Score=260.51  Aligned_cols=202  Identities=12%  Similarity=0.166  Sum_probs=177.1

Q ss_pred             EEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      .+..++.||++||...  ....+.++.|||.+++|..+++|+.+|..+++++.+++||++||.+.      ..+++.||+
T Consensus       267 ~~~~~~~lyviGG~~~--~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp  338 (480)
T PHA02790        267 STHVGEVVYLIGGWMN--NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFH  338 (480)
T ss_pred             eEEECCEEEEEcCCCC--CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC------CCceEEEEC
Confidence            4558999999999754  34567799999999999999999999998999999999999999743      146899999


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCCCceeecccccccCCCCcEEEEeCCeE
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVL  298 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~l  298 (387)
                      .+++    |..+++||.++..   +++++++|+||++||..   ..+++|||.+++|+.+++ ++.++..+++++.+|+|
T Consensus       339 ~~n~----W~~~~~l~~~r~~---~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~I  410 (480)
T PHA02790        339 GDAA----WVNMPSLLKPRCN---PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRL  410 (480)
T ss_pred             CCCe----EEECCCCCCCCcc---cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEE
Confidence            9999    9999999987754   77889999999999965   568999999999999987 77777778888899999


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~  366 (387)
                      |++||   ...+||+++++|+.+.+++..+..++++.++|+||++||..     ..+.+||+.++    +|.+
T Consensus       411 Yv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~----~W~~  476 (480)
T PHA02790        411 FLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY----SWNI  476 (480)
T ss_pred             EEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC----eEEe
Confidence            99985   47889999999999999988888889999999999999842     56899999988    8986

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.2e-30  Score=253.10  Aligned_cols=240  Identities=14%  Similarity=0.178  Sum_probs=190.7

Q ss_pred             EEEEEeCCC----CCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCce
Q 016552          101 HLFTFDPVS----STWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW  176 (387)
Q Consensus       101 ~~~~~d~~~----~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W  176 (387)
                      ..+++++.+    ++|..+.++...|.            .|.+|++++++++||++||.........+++++||+.+++|
T Consensus       138 g~y~~~~~~~~~~~~W~~~~~~~~~P~------------pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W  205 (470)
T PLN02193        138 GAYISLPSTPKLLGKWIKVEQKGEGPG------------LRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTW  205 (470)
T ss_pred             EEEEecCCChhhhceEEEcccCCCCCC------------CccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEE
Confidence            356667755    79999886533221            26678999999999999997543223346799999999999


Q ss_pred             eeCCCC---CC-CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC---CCCCccccceEEE
Q 016552          177 TFGPEL---VT-PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL---KDGRFSREAIDAV  249 (387)
Q Consensus       177 ~~l~~~---p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~  249 (387)
                      +.++++   |. .|..+++++++++|||+||...   ...++++++||+.+++    |+.++++   |.+|   ..++++
T Consensus       206 ~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R---~~h~~~  275 (470)
T PLN02193        206 SISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNE----WKLLTPVEEGPTPR---SFHSMA  275 (470)
T ss_pred             EeCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCE----EEEcCcCCCCCCCc---cceEEE
Confidence            998754   33 2457788899999999999865   2356789999999999    9999888   5444   447888


Q ss_pred             EECCEEEEEeeeC-----CeEEEEECCCCceeeccc--ccccCCCCcEEEEeCCeEEEEeCCC----CeEEEEeCCCCce
Q 016552          250 GWKGKLCLVNVKG-----AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGIDENS----CTLSRYDEVMDDW  318 (387)
Q Consensus       250 ~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~~~~~~----~~l~~yd~~~~~W  318 (387)
                      +++++||++||..     .++++||+.+++|+.++.  .++..+.++++++.+++||+++|..    ..+++||+++++|
T Consensus       276 ~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        276 ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEE
Confidence            8999999999965     678999999999998864  2345566778888899999999854    4699999999999


Q ss_pred             eEcccc---ccccCceEEEEeCCeEEEEecCC--------------CeEEEEeccCCCCCCceEE
Q 016552          319 KEVVKS---DLLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       319 ~~v~~~---~~~~~~~~~~~~~g~i~v~gg~~--------------~~i~~~d~~~~~~~~~W~~  366 (387)
                      +.+..+   |..+..++++.++++|||+||..              +++++||+.+.    +|..
T Consensus       356 ~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~----~W~~  416 (470)
T PLN02193        356 TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL----QWER  416 (470)
T ss_pred             EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC----EEEE
Confidence            998754   55666788899999999999842              36899999988    8995

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=265.04  Aligned_cols=214  Identities=9%  Similarity=0.149  Sum_probs=178.3

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|+.++... .......++.|||.+++|..+++|+.+               |..+++++++|+||++||..+  ....
T Consensus       305 ~IYviGG~~~-~~~~~~~v~~Yd~~~n~W~~~~~m~~~---------------R~~~~~~~~~g~IYviGG~~~--~~~~  366 (557)
T PHA02713        305 EIIIAGGYNF-NNPSLNKVYKINIENKIHVELPPMIKN---------------RCRFSLAVIDDTIYAIGGQNG--TNVE  366 (557)
T ss_pred             EEEEEcCCCC-CCCccceEEEEECCCCeEeeCCCCcch---------------hhceeEEEECCEEEEECCcCC--CCCC
Confidence            5777776310 011223588999999999999999873               556899999999999999754  3346


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCC---------------CCCCcceEEEEECCCCcccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQF---------------SSDVAKSVEKWDLMNGEKNS  228 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------------~~~~~~~v~~yd~~~~~~~~  228 (387)
                      +.+++|||.+++|..+++||.+|..+++++++++|||+||.+...               +....+++++|||.+++   
T Consensus       367 ~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---  443 (557)
T PHA02713        367 RTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---  443 (557)
T ss_pred             ceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---
Confidence            789999999999999999999999999999999999999986421               01135789999999999   


Q ss_pred             CeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECCC-CceeecccccccCCCCcEEEEeCCeEEEE
Q 016552          229 RWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVA-NTWDDMREGMVRGWRGPVAAMDEEVLYGI  301 (387)
Q Consensus       229 ~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~-~~W~~~~~~~~~~~~~~~~~~~~~~ly~~  301 (387)
                       |+.+++|+.++..   +.+++++|+||++||..      ..+++|||++ ++|+.+++ ++..+...++++.+|+||++
T Consensus       444 -W~~v~~m~~~r~~---~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~-m~~~r~~~~~~~~~~~iyv~  518 (557)
T PHA02713        444 -WETLPNFWTGTIR---PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT-TESRLSALHTILHDNTIMML  518 (557)
T ss_pred             -EeecCCCCccccc---CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc-cCcccccceeEEECCEEEEE
Confidence             9999999987754   77899999999999863      3579999999 89999987 88888889999999999999


Q ss_pred             eCCCC--eEEEEeCCCCceeEccc
Q 016552          302 DENSC--TLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       302 ~~~~~--~l~~yd~~~~~W~~v~~  323 (387)
                      ||.++  .+.+||+++++|+.+.+
T Consensus       519 Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        519 HCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             eeecceeehhhcCcccccccchhh
Confidence            99766  68999999999998775

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.98  E-value=3.6e-30  Score=241.02  Aligned_cols=219  Identities=14%  Similarity=0.167  Sum_probs=174.4

Q ss_pred             EEEEEe-CCC-CCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCce--
Q 016552          101 HLFTFD-PVS-STWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW--  176 (387)
Q Consensus       101 ~~~~~d-~~~-~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W--  176 (387)
                      .+++|+ +.. .+|..++++|.+               |..+++++++++||++||...  ....+++++||+.+++|  
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~---------------r~~~~~~~~~~~lyviGG~~~--~~~~~~v~~~d~~~~~w~~  102 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYE---------------AAYGASVSVENGIYYIGGSNS--SERFSSVYRITLDESKEEL  102 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCcc---------------ccceEEEEECCEEEEEcCCCC--CCCceeEEEEEEcCCceee
Confidence            366664 433 379999988863               333667888999999999754  34567899999999998  


Q ss_pred             --eeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECC
Q 016552          177 --TFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKG  253 (387)
Q Consensus       177 --~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g  253 (387)
                        +.+++||.+|..+++++.+++|||+||...   ....+++++||+.+++    |+.+++||. +|.   .+.++++++
T Consensus       103 ~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~p~~~r~---~~~~~~~~~  172 (323)
T TIGR03548       103 ICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQE----WFELPDFPGEPRV---QPVCVKLQN  172 (323)
T ss_pred             eeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCC----eeECCCCCCCCCC---cceEEEECC
Confidence              789999999999999999999999999754   2346789999999999    999998874 443   366788999


Q ss_pred             EEEEEeeeC----CeEEEEECCCCceeecccc----cccCCCC-cEEEEeCCeEEEEeCCC-------------------
Q 016552          254 KLCLVNVKG----AEGAVYDVVANTWDDMREG----MVRGWRG-PVAAMDEEVLYGIDENS-------------------  305 (387)
Q Consensus       254 ~lyv~gg~~----~~i~~yD~~~~~W~~~~~~----~~~~~~~-~~~~~~~~~ly~~~~~~-------------------  305 (387)
                      +||++||..    .++++||+++++|+.++..    .+....+ .++++.+++||++||.+                   
T Consensus       173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  252 (323)
T TIGR03548       173 ELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESL  252 (323)
T ss_pred             EEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhh
Confidence            999999975    4678999999999998762    1222222 33455678999999853                   


Q ss_pred             ------------------CeEEEEeCCCCceeEcccccc-ccCceEEEEeCCeEEEEecC
Q 016552          306 ------------------CTLSRYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       306 ------------------~~l~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~g~i~v~gg~  346 (387)
                                        ..+++||+++++|+.+..+|. .+..+.++.++++||++||.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       253 KGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             hhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence                              358999999999999997764 56677889999999999985

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=99.97  E-value=1.9e-29  Score=246.52  Aligned_cols=252  Identities=17%  Similarity=0.247  Sum_probs=189.3

Q ss_pred             eEEeecCCCCCCCCCC--eEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCC
Q 016552           84 SLYALFSPKSNSSSTP--IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNP  161 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~--~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~  161 (387)
                      .+|++++..  .....  ..+++||+.+++|..++++...|..           .+.++++++++++||++||...  ..
T Consensus       177 ~iyv~GG~~--~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-----------~~~~~~~v~~~~~lYvfGG~~~--~~  241 (470)
T PLN02193        177 KIYSFGGEF--TPNQPIDKHLYVFDLETRTWSISPATGDVPHL-----------SCLGVRMVSIGSTLYVFGGRDA--SR  241 (470)
T ss_pred             EEEEECCcC--CCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-----------cccceEEEEECCEEEEECCCCC--CC
Confidence            577777631  01111  2489999999999987654332211           1446788999999999999765  34


Q ss_pred             CCCccEEEeccCCceeeCCCC---CCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC
Q 016552          162 ALTRPLIFDPICRTWTFGPEL---VTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       162 ~~~~~~vyd~~t~~W~~l~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~  238 (387)
                      ..+++++||+.+++|++++++   |.+|..+++++.+++|||+||.+.   ...++++++||+.+++    |+.++....
T Consensus       242 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~----W~~~~~~~~  314 (470)
T PLN02193        242 QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKK----WFHCSTPGD  314 (470)
T ss_pred             CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCE----EEeCCCCCC
Confidence            578999999999999999988   789999999999999999999865   2356789999999999    999875221


Q ss_pred             CCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeecccc--cccCCCCcEEEEeCCeEEEEeCCC-------
Q 016552          239 GRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS-------  305 (387)
Q Consensus       239 ~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~~~~-------  305 (387)
                      ....|..+.++++++++|+++|..    +++++||+++++|+.++..  .|..+..+++++.+++||++||..       
T Consensus       315 ~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~  394 (470)
T PLN02193        315 SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAH  394 (470)
T ss_pred             CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccc
Confidence            112234477888999999999864    7899999999999998742  355666778888899999999842       


Q ss_pred             -------CeEEEEeCCCCceeEcccc------ccccCceE--EEEeC--CeEEEEecCC------CeEEEEeccC
Q 016552          306 -------CTLSRYDEVMDDWKEVVKS------DLLKGARH--AAAGG--GRVCAVCENG------GGIVVVDVKA  357 (387)
Q Consensus       306 -------~~l~~yd~~~~~W~~v~~~------~~~~~~~~--~~~~~--g~i~v~gg~~------~~i~~~d~~~  357 (387)
                             .++++||+++++|+.+..+      |..|+.++  ++.+.  +.++++||.+      ++++.|++++
T Consensus       395 ~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~  469 (470)
T PLN02193        395 VGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS  469 (470)
T ss_pred             cCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence                   2589999999999998743      23343332  22333  4499999863      5778887763

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=7.8e-30  Score=241.16  Aligned_cols=236  Identities=17%  Similarity=0.193  Sum_probs=178.4

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeC--CCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC--
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDP--VSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF--  159 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--  159 (387)
                      .+|+.++.      ....+++||+  .+++|..+++||..+              |..+.+++++++||++||.....  
T Consensus        19 ~vyv~GG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------R~~~~~~~~~~~iYv~GG~~~~~~~   78 (346)
T TIGR03547        19 KVYVGLGS------AGTSWYKLDLKKPSKGWQKIADFPGGP--------------RNQAVAAAIDGKLYVFGGIGKANSE   78 (346)
T ss_pred             EEEEEccc------cCCeeEEEECCCCCCCceECCCCCCCC--------------cccceEEEECCEEEEEeCCCCCCCC
Confidence            47877653      2245888885  578999999988421              44578999999999999975321  


Q ss_pred             --CCCCCccEEEeccCCceeeCC-CCCCCCcceeEE-EeCCEEEEEecCCCCC-----------CC--------------
Q 016552          160 --NPALTRPLIFDPICRTWTFGP-ELVTPRRWCAAG-CSRGAVYVASGIGSQF-----------SS--------------  210 (387)
Q Consensus       160 --~~~~~~~~vyd~~t~~W~~l~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~-----------~~--------------  210 (387)
                        ....+++++|||.+++|++++ ++|.+|..++++ +.+++||++||.+...           +.              
T Consensus        79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T TIGR03547        79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS  158 (346)
T ss_pred             CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence              124678999999999999997 456666666555 6899999999975310           00              


Q ss_pred             ------CCcceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECCEEEEEeeeC------CeEEEEE--CCCCce
Q 016552          211 ------DVAKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGKLCLVNVKG------AEGAVYD--VVANTW  275 (387)
Q Consensus       211 ------~~~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD--~~~~~W  275 (387)
                            ...+.+++||+.+++    |+.+++||. ++.   .+.+++++++||++||..      ..++.||  +++++|
T Consensus       159 ~~~~~~~~~~~v~~YDp~t~~----W~~~~~~p~~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W  231 (346)
T TIGR03547       159 QPPEDYFWNKNVLSYDPSTNQ----WRNLGENPFLGTA---GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW  231 (346)
T ss_pred             CChhHcCccceEEEEECCCCc----eeECccCCCCcCC---CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence                  013689999999999    999999985 343   366788999999999964      2355565  577799


Q ss_pred             eecccccccCC-------CCcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceeEcccccc
Q 016552          276 DDMREGMVRGW-------RGPVAAMDEEVLYGIDENS----------------------CTLSRYDEVMDDWKEVVKSDL  326 (387)
Q Consensus       276 ~~~~~~~~~~~-------~~~~~~~~~~~ly~~~~~~----------------------~~l~~yd~~~~~W~~v~~~~~  326 (387)
                      ++++. ++..+       .++.+++.+++||++||..                      ..+.+||+++++|+.+..+|.
T Consensus       232 ~~~~~-m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~  310 (346)
T TIGR03547       232 NKLPP-LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ  310 (346)
T ss_pred             eecCC-CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence            99987 44432       2334667899999999842                      146789999999999999988


Q ss_pred             ccCceEEEEeCCeEEEEecCC
Q 016552          327 LKGARHAAAGGGRVCAVCENG  347 (387)
Q Consensus       327 ~~~~~~~~~~~g~i~v~gg~~  347 (387)
                      .+..+++++++|+|||+||..
T Consensus       311 ~~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       311 GLAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             CceeeEEEEcCCEEEEEeccC
Confidence            777777888999999999863

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=5.6e-29  Score=237.26  Aligned_cols=247  Identities=16%  Similarity=0.209  Sum_probs=183.9

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCC--CCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC--
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPV--SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF--  159 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--  159 (387)
                      .+|++++.      ....+++||+.  +++|..++++|..|              |.++.+++++++||++||.....  
T Consensus        40 ~iyv~gG~------~~~~~~~~d~~~~~~~W~~l~~~p~~~--------------r~~~~~v~~~~~IYV~GG~~~~~~~   99 (376)
T PRK14131         40 TVYVGLGS------AGTSWYKLDLNAPSKGWTKIAAFPGGP--------------REQAVAAFIDGKLYVFGGIGKTNSE   99 (376)
T ss_pred             EEEEEeCC------CCCeEEEEECCCCCCCeEECCcCCCCC--------------cccceEEEECCEEEEEcCCCCCCCC
Confidence            57877653      12347888876  47899999887522              45678899999999999975311  


Q ss_pred             --CCCCCccEEEeccCCceeeCCC-CCCCCcceeEEE-eCCEEEEEecCCCC-CC-------------------------
Q 016552          160 --NPALTRPLIFDPICRTWTFGPE-LVTPRRWCAAGC-SRGAVYVASGIGSQ-FS-------------------------  209 (387)
Q Consensus       160 --~~~~~~~~vyd~~t~~W~~l~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~-~~-------------------------  209 (387)
                        ....+++++||+.+++|+++++ +|.++..+++++ .+++||++||.... ++                         
T Consensus       100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~  179 (376)
T PRK14131        100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD  179 (376)
T ss_pred             CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence              1235789999999999999986 356666666665 79999999997531 00                         


Q ss_pred             -----CCCcceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECCEEEEEeeeC------CeE--EEEECCCCce
Q 016552          210 -----SDVAKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGKLCLVNVKG------AEG--AVYDVVANTW  275 (387)
Q Consensus       210 -----~~~~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg~~------~~i--~~yD~~~~~W  275 (387)
                           ....+.+++||+.+++    |..++++|. ++.   .++++.++++||++||..      ..+  ..||+++++|
T Consensus       180 ~~~~~~~~~~~v~~YD~~t~~----W~~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W  252 (376)
T PRK14131        180 KKPEDYFFNKEVLSYDPSTNQ----WKNAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKW  252 (376)
T ss_pred             CChhhcCcCceEEEEECCCCe----eeECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcce
Confidence                 0024689999999999    999999985 333   366788899999999853      223  3467889999


Q ss_pred             eecccccccCCC--------CcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceeEccccc
Q 016552          276 DDMREGMVRGWR--------GPVAAMDEEVLYGIDENS----------------------CTLSRYDEVMDDWKEVVKSD  325 (387)
Q Consensus       276 ~~~~~~~~~~~~--------~~~~~~~~~~ly~~~~~~----------------------~~l~~yd~~~~~W~~v~~~~  325 (387)
                      ++++. ++..+.        +..+++.+++||++||..                      ..+.+||+++++|+.+..+|
T Consensus       253 ~~~~~-~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp  331 (376)
T PRK14131        253 QKLPD-LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP  331 (376)
T ss_pred             eecCC-CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence            99986 443321        222567789999999842                      02467999999999999988


Q ss_pred             cccCceEEEEeCCeEEEEecCC------CeEEEEeccCC
Q 016552          326 LLKGARHAAAGGGRVCAVCENG------GGIVVVDVKAA  358 (387)
Q Consensus       326 ~~~~~~~~~~~~g~i~v~gg~~------~~i~~~d~~~~  358 (387)
                      ..+..+.+++++|+|||+||..      +++++|++..+
T Consensus       332 ~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~  370 (376)
T PRK14131        332 QGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGK  370 (376)
T ss_pred             CCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence            8887778899999999999852      46777877755

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=2.6e-29  Score=246.21  Aligned_cols=201  Identities=17%  Similarity=0.202  Sum_probs=167.9

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|+.++..  .......++.|||.+++|..+++|+.+               |..+++++.+++||++||...     .
T Consensus       273 ~lyviGG~~--~~~~~~~v~~Ydp~~~~W~~~~~m~~~---------------r~~~~~v~~~~~iYviGG~~~-----~  330 (480)
T PHA02790        273 VVYLIGGWM--NNEIHNNAIAVNYISNNWIPIPPMNSP---------------RLYASGVPANNKLYVVGGLPN-----P  330 (480)
T ss_pred             EEEEEcCCC--CCCcCCeEEEEECCCCEEEECCCCCch---------------hhcceEEEECCEEEEECCcCC-----C
Confidence            366766531  111223478899999999999999863               444778899999999999642     2


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..+.+|||.+++|..+++||.+|..+++++.+|+|||+||.+.     ..+.+++||+.+++    |+.+++|+.++.. 
T Consensus       331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~-----~~~~ve~ydp~~~~----W~~~~~m~~~r~~-  400 (480)
T PHA02790        331 TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE-----TDTTTEYLLPNHDQ----WQFGPSTYYPHYK-  400 (480)
T ss_pred             CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC-----CCccEEEEeCCCCE----EEeCCCCCCcccc-
Confidence            5689999999999999999999999999999999999999754     13578999999999    9999999987754 


Q ss_pred             cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCce
Q 016552          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W  318 (387)
                        +.+++++|+||++||   ..++||+++++|+.+++ ++..+..+++++.+|+||++||.+     ..+.+||+++++|
T Consensus       401 --~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        401 --SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             --ceEEEECCEEEEECC---ceEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence              678899999999998   47999999999999987 777788888999999999999843     3589999999999


Q ss_pred             eEcc
Q 016552          319 KEVV  322 (387)
Q Consensus       319 ~~v~  322 (387)
                      +...
T Consensus       475 ~~~~  478 (480)
T PHA02790        475 NIWD  478 (480)
T ss_pred             EecC
Confidence            8653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=1.6e-28  Score=232.28  Aligned_cols=214  Identities=18%  Similarity=0.221  Sum_probs=165.5

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEec--cCCceeeCCCCC-CCCcceeEEEeCCEEEEEecCCCCC---CCCCc
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDP--ICRTWTFGPELV-TPRRWCAAGCSRGAVYVASGIGSQF---SSDVA  213 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~--~t~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~  213 (387)
                      ..+++++++|||+||...      +.+++||+  .+++|+++++|| .+|..+++++++++|||+||.....   ....+
T Consensus        11 ~~~~~~~~~vyv~GG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~   84 (346)
T TIGR03547        11 GTGAIIGDKVYVGLGSAG------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVF   84 (346)
T ss_pred             ceEEEECCEEEEEccccC------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceec
Confidence            457788999999999522      56899996  678999999999 5899999999999999999985421   01246


Q ss_pred             ceEEEEECCCCccccCeEEcC-CCCCCCccccceEEE-EECCEEEEEeeeC-----------------------------
Q 016552          214 KSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAV-GWKGKLCLVNVKG-----------------------------  262 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~-~~~g~lyv~gg~~-----------------------------  262 (387)
                      +++++||+.+++    |+.++ ++|..+..   +.++ +++|+||++||..                             
T Consensus        85 ~~v~~Yd~~~~~----W~~~~~~~p~~~~~---~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (346)
T TIGR03547        85 DDVYRYDPKKNS----WQKLDTRSPVGLLG---ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF  157 (346)
T ss_pred             ccEEEEECCCCE----EecCCCCCCCcccc---eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence            789999999999    99997 45544432   4444 6899999999863                             


Q ss_pred             ----------CeEEEEECCCCceeeccccccc-CCCCcEEEEeCCeEEEEeCCC------CeEEEEe--CCCCceeEccc
Q 016552          263 ----------AEGAVYDVVANTWDDMREGMVR-GWRGPVAAMDEEVLYGIDENS------CTLSRYD--EVMDDWKEVVK  323 (387)
Q Consensus       263 ----------~~i~~yD~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ly~~~~~~------~~l~~yd--~~~~~W~~v~~  323 (387)
                                +.+++||+.+++|+.++. ++. .+.++++++.+++||++||..      ..++.||  +++++|.++..
T Consensus       158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~  236 (346)
T TIGR03547       158 SQPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP  236 (346)
T ss_pred             CCChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence                      468999999999999987 554 566778888899999999842      2355554  57789999998


Q ss_pred             ccccc-------CceEEEEeCCeEEEEecCC----------------------CeEEEEeccCCCCCCceEE--eCCCC
Q 016552          324 SDLLK-------GARHAAAGGGRVCAVCENG----------------------GGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       324 ~~~~~-------~~~~~~~~~g~i~v~gg~~----------------------~~i~~~d~~~~~~~~~W~~--~~p~~  371 (387)
                      ++..+       ..+.+++++|+||++||..                      ..+.+||+.+.    +|+.  .+|..
T Consensus       237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~----~W~~~~~lp~~  311 (346)
T TIGR03547       237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG----KWSKVGKLPQG  311 (346)
T ss_pred             CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC----cccccCCCCCC
Confidence            86533       1344678999999999842                      14678999977    8995  66654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=8.4e-29  Score=247.35  Aligned_cols=237  Identities=15%  Similarity=0.269  Sum_probs=188.1

Q ss_pred             hhHhhhhhhcCCC-C--Cce---eeEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccc
Q 016552           66 VCHSWRRLIYSPS-F--PPF---LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLP  139 (387)
Q Consensus        66 VcK~W~~li~~~~-f--~~~---~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~  139 (387)
                      ..++|..+...+. .  ...   ..+|++++... .......++.||+.+++|..+++++.+               |.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~~---------------R~~  335 (534)
T PHA03098        272 PLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK-NNLSVNSVVSYDTKTKSWNKVPELIYP---------------RKN  335 (534)
T ss_pred             hhhhcccccCccccccceEEEECCEEEEECCCcC-CCCeeccEEEEeCCCCeeeECCCCCcc---------------ccc
Confidence            3566776654431 1  111   25777776310 011123588999999999999988762               556


Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      +++++.+++||++||...  ....+++++||+.+++|+.+++||.+|..+++++.+++|||+||...  +...++++++|
T Consensus       336 ~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~y  411 (534)
T PHA03098        336 PGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVECF  411 (534)
T ss_pred             ceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC--CCcccceEEEE
Confidence            889999999999999764  34567899999999999999999999999999999999999999754  23346789999


Q ss_pred             ECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC--------CeEEEEECCCCceeecccccccCCCCcEE
Q 016552          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      |+.+++    |..++++|.++..   +++++++++||++||..        ..+++||+++++|+.++. ++.++..+++
T Consensus       412 d~~t~~----W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~  483 (534)
T PHA03098        412 SLNTNK----WSKGSPLPISHYG---GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASL  483 (534)
T ss_pred             eCCCCe----eeecCCCCccccC---ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceE
Confidence            999999    9999999977654   77889999999999864        348999999999999986 5666667777


Q ss_pred             EEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccccccCc
Q 016552          292 AMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       292 ~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~~~~~~  330 (387)
                      ++.+++||++||..     ..+++||+++++|..+..+|...+.
T Consensus       484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~  527 (534)
T PHA03098        484 CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS  527 (534)
T ss_pred             EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence            88899999999853     4699999999999999887765543

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.97  E-value=7.9e-29  Score=211.01  Aligned_cols=255  Identities=14%  Similarity=0.199  Sum_probs=200.8

Q ss_pred             eEEeecCCC--C-CCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCC
Q 016552           84 SLYALFSPK--S-NSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFN  160 (387)
Q Consensus        84 ~l~~~~~~~--~-~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  160 (387)
                      ++|.+++-=  + -.....+.++++|..+-+|.++|+--....+.  ...|.....|+|+..+.+.+++|+.||.+.. .
T Consensus        25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~--~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~-e  101 (392)
T KOG4693|consen   25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIE--SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDD-E  101 (392)
T ss_pred             eEEecCCcccccccccCCcceeEEeeccceeEEecCccccccccc--CCCCccchhhcCceEEEEcceEEEEcCccCc-c
Confidence            467766521  0 02235678999999999999988721110000  0112334569999999999999999997653 4


Q ss_pred             CCCCccEEEeccCCceeeCC---CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552          161 PALTRPLIFDPICRTWTFGP---ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       161 ~~~~~~~vyd~~t~~W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p  237 (387)
                      ..++-++.|||.|++|.+..   -+|..|..|++++.++.+|++||+... .+...+++.++|..|-+    |+.+....
T Consensus       102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt----Wr~~~Tkg  176 (392)
T KOG4693|consen  102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT----WREMHTKG  176 (392)
T ss_pred             cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee----eeehhccC
Confidence            56788899999999999842   468899999999999999999998653 12455689999999999    99997665


Q ss_pred             CCCccccceEEEEECCEEEEEeeeC--------------CeEEEEECCCCceeeccc--ccccCCCCcEEEEeCCeEEEE
Q 016552          238 DGRFSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMDEEVLYGI  301 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~g~lyv~gg~~--------------~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~~~~ly~~  301 (387)
                      .+..-|+.++++++++.+|++||++              +.|.++|+.|+.|...+.  ..|.+++.+++.+.+++||++
T Consensus       177 ~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F  256 (392)
T KOG4693|consen  177 DPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF  256 (392)
T ss_pred             CCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEe
Confidence            5444467788999999999999965              788999999999987763  357788899999999999999


Q ss_pred             eCCC-------CeEEEEeCCCCceeEcccc---ccccCceEEEEeCCeEEEEecC
Q 016552          302 DENS-------CTLSRYDEVMDDWKEVVKS---DLLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       302 ~~~~-------~~l~~yd~~~~~W~~v~~~---~~~~~~~~~~~~~g~i~v~gg~  346 (387)
                      ||..       .++++|||.+..|..|..-   |..+...|++..++++|+|||.
T Consensus       257 GGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT  311 (392)
T KOG4693|consen  257 GGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT  311 (392)
T ss_pred             cccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence            9854       3699999999999998753   5677788899999999999983

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.97  E-value=6.2e-28  Score=225.90  Aligned_cols=216  Identities=14%  Similarity=0.131  Sum_probs=170.0

Q ss_pred             ccceEEEEECCEEEEEecccCCCC--------CCCCccEEEe-ccC-CceeeCCCCCCCCcceeEEEeCCEEEEEecCCC
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFN--------PALTRPLIFD-PIC-RTWTFGPELVTPRRWCAAGCSRGAVYVASGIGS  206 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~--------~~~~~~~vyd-~~t-~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~  206 (387)
                      ..++.++++++.|||+||......        ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||.+.
T Consensus         4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~   83 (323)
T TIGR03548         4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS   83 (323)
T ss_pred             eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC
Confidence            345778889999999999765321        1235678885 432 379999999999988888889999999999865


Q ss_pred             CCCCCCcceEEEEECCCCccccCe----EEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceee
Q 016552          207 QFSSDVAKSVEKWDLMNGEKNSRW----EKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD  277 (387)
Q Consensus       207 ~~~~~~~~~v~~yd~~~~~~~~~W----~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~  277 (387)
                         ...+++++.||+.+++    |    ..+++||.++..   +++++++++||++||..     +++++||+.+++|++
T Consensus        84 ---~~~~~~v~~~d~~~~~----w~~~~~~~~~lp~~~~~---~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~  153 (323)
T TIGR03548        84 ---SERFSSVYRITLDESK----EELICETIGNLPFTFEN---GSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFE  153 (323)
T ss_pred             ---CCCceeEEEEEEcCCc----eeeeeeEcCCCCcCccC---ceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeE
Confidence               2346789999999998    7    788899877643   77889999999999962     789999999999999


Q ss_pred             cccccccCCCCcEEEEeCCeEEEEeCCCC----eEEEEeCCCCceeEccccc-----ccc-CceEEEEeCCeEEEEecCC
Q 016552          278 MREGMVRGWRGPVAAMDEEVLYGIDENSC----TLSRYDEVMDDWKEVVKSD-----LLK-GARHAAAGGGRVCAVCENG  347 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~ly~~~~~~~----~l~~yd~~~~~W~~v~~~~-----~~~-~~~~~~~~~g~i~v~gg~~  347 (387)
                      ++..+...+..+++++.+++||++||.++    ++++||+++++|+.+..++     ..+ ..+.++..+++||++||..
T Consensus       154 ~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       154 LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            98633345566777788999999998542    4789999999999998653     112 2343455679999999853


Q ss_pred             -------------------------------------CeEEEEeccCCCCCCceEE
Q 016552          348 -------------------------------------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       348 -------------------------------------~~i~~~d~~~~~~~~~W~~  366 (387)
                                                           ..+++||+.++    +|..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~  285 (323)
T TIGR03548       234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG----KWKS  285 (323)
T ss_pred             HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC----eeeE
Confidence                                                 46999999988    8996

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.96  E-value=1.8e-26  Score=219.99  Aligned_cols=227  Identities=19%  Similarity=0.209  Sum_probs=170.4

Q ss_pred             CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEecc--CCceeeCCCCC-CCCc
Q 016552          111 TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRR  187 (387)
Q Consensus       111 ~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~--t~~W~~l~~~p-~~r~  187 (387)
                      .+..+++||.+               +..+++++++++||++||...      ..+++||+.  +++|..+++|| .+|.
T Consensus        18 ~~~~l~~lP~~---------------~~~~~~~~~~~~iyv~gG~~~------~~~~~~d~~~~~~~W~~l~~~p~~~r~   76 (376)
T PRK14131         18 NAEQLPDLPVP---------------FKNGTGAIDNNTVYVGLGSAG------TSWYKLDLNAPSKGWTKIAAFPGGPRE   76 (376)
T ss_pred             ecccCCCCCcC---------------ccCCeEEEECCEEEEEeCCCC------CeEEEEECCCCCCCeEECCcCCCCCcc
Confidence            45677888762               222467788999999999532      347899986  47999999998 5898


Q ss_pred             ceeEEEeCCEEEEEecCCCC-CC--CCCcceEEEEECCCCccccCeEEcCC-CCCCCccccceEEEE-ECCEEEEEeeeC
Q 016552          188 WCAAGCSRGAVYVASGIGSQ-FS--SDVAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVG-WKGKLCLVNVKG  262 (387)
Q Consensus       188 ~~~~~~~~~~iyv~GG~~~~-~~--~~~~~~v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~-~~g~lyv~gg~~  262 (387)
                      .+++++.+++|||+||.... ..  ...++++++||+.+++    |..+++ +|..+.   .+.+++ .+++||++||..
T Consensus        77 ~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~----W~~~~~~~p~~~~---~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS----WQKLDTRSPVGLA---GHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             cceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE----EEeCCCCCCCccc---ceEEEEeeCCEEEEECCCC
Confidence            89999999999999998641 11  1246789999999999    999985 344432   255555 899999999953


Q ss_pred             ---------------------------------------CeEEEEECCCCceeeccccccc-CCCCcEEEEeCCeEEEEe
Q 016552          263 ---------------------------------------AEGAVYDVVANTWDDMREGMVR-GWRGPVAAMDEEVLYGID  302 (387)
Q Consensus       263 ---------------------------------------~~i~~yD~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ly~~~  302 (387)
                                                             +.+++||+.+++|+.++. ++. .+.++++++.+++||++|
T Consensus       150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~G  228 (376)
T PRK14131        150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLIN  228 (376)
T ss_pred             HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEe
Confidence                                                   368999999999999987 453 566778888899999999


Q ss_pred             CCC------CeE--EEEeCCCCceeEccccccccC--------ceEEEEeCCeEEEEecCC-------------------
Q 016552          303 ENS------CTL--SRYDEVMDDWKEVVKSDLLKG--------ARHAAAGGGRVCAVCENG-------------------  347 (387)
Q Consensus       303 ~~~------~~l--~~yd~~~~~W~~v~~~~~~~~--------~~~~~~~~g~i~v~gg~~-------------------  347 (387)
                      |..      ..+  +.||+++++|..+..+|..+.        .+.++.++++|||+||.+                   
T Consensus       229 G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~  308 (376)
T PRK14131        229 GEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGL  308 (376)
T ss_pred             eeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCC
Confidence            842      123  456889999999998865432        123567899999999842                   


Q ss_pred             ---CeEEEEeccCCCCCCceEE--eCCC
Q 016552          348 ---GGIVVVDVKAAAAPTIFVV--DTPL  370 (387)
Q Consensus       348 ---~~i~~~d~~~~~~~~~W~~--~~p~  370 (387)
                         ..+.+||+.+.    +|+.  .+|.
T Consensus       309 ~~~~~~e~yd~~~~----~W~~~~~lp~  332 (376)
T PRK14131        309 KKSWSDEIYALVNG----KWQKVGELPQ  332 (376)
T ss_pred             cceeehheEEecCC----cccccCcCCC
Confidence               12467999987    8985  5554

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.95  E-value=4.4e-26  Score=194.32  Aligned_cols=220  Identities=15%  Similarity=0.205  Sum_probs=179.2

Q ss_pred             ccceEEEEECCEEEEEecccCCC---CCCCCccEEEeccCCceeeCCC-------------CCCCCcceeEEEeCCEEEE
Q 016552          137 NLPVQLVSLSGKLILLAATTHNF---NPALTRPLIFDPICRTWTFGPE-------------LVTPRRWCAAGCSRGAVYV  200 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~---~~~~~~~~vyd~~t~~W~~l~~-------------~p~~r~~~~~~~~~~~iyv  200 (387)
                      |..+++++++..+|-+||++.+.   ....-+|+++|..+-+|.++||             .|.-|+.|+.+.+++++|+
T Consensus        14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv   93 (392)
T KOG4693|consen   14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV   93 (392)
T ss_pred             cccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence            55689999999999999988643   2234468999999999999887             2445889999999999999


Q ss_pred             EecCCCCCCCCCcceEEEEECCCCccccCeEEcC---CCCCCCccccceEEEEECCEEEEEeeeC-------CeEEEEEC
Q 016552          201 ASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG---ELKDGRFSREAIDAVGWKGKLCLVNVKG-------AEGAVYDV  270 (387)
Q Consensus       201 ~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~g~lyv~gg~~-------~~i~~yD~  270 (387)
                      .||.++  +....+.+..||++++.    |.+..   -+|   -.|+.+++++.++.+|++||+.       .++.++|.
T Consensus        94 WGGRND--~egaCN~Ly~fDp~t~~----W~~p~v~G~vP---gaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~  164 (392)
T KOG4693|consen   94 WGGRND--DEGACNLLYEFDPETNV----WKKPEVEGFVP---GARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDF  164 (392)
T ss_pred             EcCccC--cccccceeeeecccccc----ccccceeeecC---CccCCceeeEECcEEEEecChHHHHHhhhccceeEec
Confidence            999987  45677889999999999    99764   345   3456699999999999999975       88999999


Q ss_pred             CCCceeeccc-ccccCCC-CcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceeEcccc---ccccCce
Q 016552          271 VANTWDDMRE-GMVRGWR-GPVAAMDEEVLYGIDENS--------------CTLSRYDEVMDDWKEVVKS---DLLKGAR  331 (387)
Q Consensus       271 ~~~~W~~~~~-~~~~~~~-~~~~~~~~~~ly~~~~~~--------------~~l~~yd~~~~~W~~v~~~---~~~~~~~  331 (387)
                      .|.+|+++.. +.|..|+ .+++++.++++|++||.+              .+|.++|++|+.|..-...   |.-+..+
T Consensus       165 ~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH  244 (392)
T KOG4693|consen  165 ATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH  244 (392)
T ss_pred             cceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc
Confidence            9999999873 2344444 677778889999999732              2589999999999987543   3345678


Q ss_pred             EEEEeCCeEEEEecCC-------CeEEEEeccCCCCCCceEEeCC
Q 016552          332 HAAAGGGRVCAVCENG-------GGIVVVDVKAAAAPTIFVVDTP  369 (387)
Q Consensus       332 ~~~~~~g~i~v~gg~~-------~~i~~~d~~~~~~~~~W~~~~p  369 (387)
                      .+..++|++|+|||.+       ++++.||+.+.    .|.++.+
T Consensus       245 S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~----~W~~I~~  285 (392)
T KOG4693|consen  245 STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS----MWSVISV  285 (392)
T ss_pred             ceEEEcceEEEecccchhhhhhhcceeecccccc----hheeeec
Confidence            8999999999999863       68999999988    9997444

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.88  E-value=8.6e-21  Score=185.33  Aligned_cols=220  Identities=14%  Similarity=0.168  Sum_probs=178.9

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC---CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCc
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP---ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  213 (387)
                      |.+|+++.+++++||+||..........+++++|..+..|....   ..|.+|+.+.+++++++||++||.+.  ....+
T Consensus        61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~--~~~~~  138 (482)
T KOG0379|consen   61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK--KYRNL  138 (482)
T ss_pred             hhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC--CCCCh
Confidence            77899999999999999976533222226999999999999854   34678999999999999999999986  23347


Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECCCCceeeccc--ccccC
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMRE--GMVRG  285 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~~--~~~~~  285 (387)
                      +.++.||+.|++    |..+.....+...|..|++++++.+|||+||.+      +++++||+++.+|.++..  ..|.+
T Consensus       139 ~~l~~~d~~t~~----W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p  214 (482)
T KOG0379|consen  139 NELHSLDLSTRT----WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP  214 (482)
T ss_pred             hheEeccCCCCc----EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence            899999999999    998875444334455699999999999999976      889999999999998863  24567


Q ss_pred             CCCcEEEEeCCeEEEEeCCC------CeEEEEeCCCCceeEccc---cccccCceEEEEeCCeEEEEecCC-------Ce
Q 016552          286 WRGPVAAMDEEVLYGIDENS------CTLSRYDEVMDDWKEVVK---SDLLKGARHAAAGGGRVCAVCENG-------GG  349 (387)
Q Consensus       286 ~~~~~~~~~~~~ly~~~~~~------~~l~~yd~~~~~W~~v~~---~~~~~~~~~~~~~~g~i~v~gg~~-------~~  349 (387)
                      +.++++++.++++++++|..      ++++.+|+.+.+|.++..   .|..+..+.++..+..++++||+.       .+
T Consensus       215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~  294 (482)
T KOG0379|consen  215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD  294 (482)
T ss_pred             CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence            78999999999999998754      369999999999997653   356777888889999999999853       35


Q ss_pred             EEEEeccCCCCCCceEE
Q 016552          350 IVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       350 i~~~d~~~~~~~~~W~~  366 (387)
                      ++.+|..+.    .|..
T Consensus       295 ~~~l~~~~~----~w~~  307 (482)
T KOG0379|consen  295 LYGLDLETL----VWSK  307 (482)
T ss_pred             ccccccccc----ceee
Confidence            688888866    8885

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.87  E-value=3.6e-20  Score=180.93  Aligned_cols=223  Identities=19%  Similarity=0.235  Sum_probs=178.0

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .++++.+...........+++||..+..|.....-...|+            .++++.+++++++||++||... .....
T Consensus        72 ~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~------------~r~g~~~~~~~~~l~lfGG~~~-~~~~~  138 (482)
T KOG0379|consen   72 KLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPS------------PRYGHSLSAVGDKLYLFGGTDK-KYRNL  138 (482)
T ss_pred             EEEEECCCCCCCccccceeEEeecCCcccccccccCCCCC------------cccceeEEEECCeEEEEccccC-CCCCh
Confidence            4677776532222223369999999999987765554432            3888999999999999999875 23457


Q ss_pred             CccEEEeccCCceeeCCC---CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          164 TRPLIFDPICRTWTFGPE---LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      .+++.||+.|++|..+.+   +|.+|..|++++++++|||+||.+.  ....++++++||+++.+    |.++.......
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~--~~~~~ndl~i~d~~~~~----W~~~~~~g~~P  212 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGG--TGDSLNDLHIYDLETST----WSELDTQGEAP  212 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccC--cccceeeeeeecccccc----ceecccCCCCC
Confidence            899999999999999754   5789999999999999999999977  33478899999999999    99987443333


Q ss_pred             ccccceEEEEECCEEEEEeeeC------CeEEEEECCCCceeecc--cccccCCCCcEEEEeCCeEEEEeCCC-------
Q 016552          241 FSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDENS-------  305 (387)
Q Consensus       241 ~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~--~~~~~~~~~~~~~~~~~~ly~~~~~~-------  305 (387)
                      .+|..|+++++++++++++|..      ++++.+|+.+.+|..+.  ...|.++..++.++.+.++++++|..       
T Consensus       213 ~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l  292 (482)
T KOG0379|consen  213 SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPL  292 (482)
T ss_pred             CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccc
Confidence            4455599999999999998755      89999999999999665  34677777888888899999999742       


Q ss_pred             CeEEEEeCCCCceeEccccc
Q 016552          306 CTLSRYDEVMDDWKEVVKSD  325 (387)
Q Consensus       306 ~~l~~yd~~~~~W~~v~~~~  325 (387)
                      ++++.||.++..|.++....
T Consensus       293 ~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  293 GDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccccceeeeeccc
Confidence            35788999999999988655

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.83  E-value=2e-19  Score=162.29  Aligned_cols=204  Identities=15%  Similarity=0.167  Sum_probs=154.4

Q ss_pred             EEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEEC-CEEEEEecccCCC----CCCCCccEEEeccCCce
Q 016552          102 LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLS-GKLILLAATTHNF----NPALTRPLIFDPICRTW  176 (387)
Q Consensus       102 ~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~----~~~~~~~~vyd~~t~~W  176 (387)
                      +|.||..++.|..+.....+|+             |.+|++|++. |.||++||...+.    .-...++|+||..|++|
T Consensus       100 Ly~Yn~k~~eWkk~~spn~P~p-------------Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw  166 (521)
T KOG1230|consen  100 LYSYNTKKNEWKKVVSPNAPPP-------------RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW  166 (521)
T ss_pred             eeEEeccccceeEeccCCCcCC-------------CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence            7789999999998865544322             5567777764 8999999965422    12356889999999999


Q ss_pred             eeCC--CCCCCCcceeEEEeCCEEEEEecCCCC-CCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-C
Q 016552          177 TFGP--ELVTPRRWCAAGCSRGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-K  252 (387)
Q Consensus       177 ~~l~--~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~  252 (387)
                      .++.  --|.+|++|.+++...+|+++||.... .+....+++++||+.+-+    |.++.+-.....+|..|+..+. +
T Consensus       167 eql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk----W~Klepsga~PtpRSGcq~~vtpq  242 (521)
T KOG1230|consen  167 EQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK----WSKLEPSGAGPTPRSGCQFSVTPQ  242 (521)
T ss_pred             eeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee----eeeccCCCCCCCCCCcceEEecCC
Confidence            9975  457899999999999999999998653 233567899999999999    9999863222244555777777 9


Q ss_pred             CEEEEEeeeC--------------CeEEEEECCC-----Cceeeccc--ccccCCCCcEEEEe-CCeEEEEeCC------
Q 016552          253 GKLCLVNVKG--------------AEGAVYDVVA-----NTWDDMRE--GMVRGWRGPVAAMD-EEVLYGIDEN------  304 (387)
Q Consensus       253 g~lyv~gg~~--------------~~i~~yD~~~-----~~W~~~~~--~~~~~~~~~~~~~~-~~~ly~~~~~------  304 (387)
                      |.||+.||+.              .+++..+++.     -.|..+.+  ..|.++.+.++++. +++-|++||-      
T Consensus       243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eee  322 (521)
T KOG1230|consen  243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEE  322 (521)
T ss_pred             CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccccc
Confidence            9999999986              7788899987     46777753  23556667676665 4477888761      


Q ss_pred             --------CCeEEEEeCCCCceeEcc
Q 016552          305 --------SCTLSRYDEVMDDWKEVV  322 (387)
Q Consensus       305 --------~~~l~~yd~~~~~W~~v~  322 (387)
                              .++|+.||...+.|.+.+
T Consensus       323 eEsl~g~F~NDLy~fdlt~nrW~~~q  348 (521)
T KOG1230|consen  323 EESLSGEFFNDLYFFDLTRNRWSEGQ  348 (521)
T ss_pred             chhhhhhhhhhhhheecccchhhHhh
Confidence                    136999999999998754

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.82  E-value=8.9e-19  Score=161.83  Aligned_cols=272  Identities=15%  Similarity=0.172  Sum_probs=188.1

Q ss_pred             hhhhhhcCCCCCc----------eeeEEeecCCCCCCCCCCeE-EEEEeCCCCCeecCCCCCCCCcccccccCCCccccc
Q 016552           69 SWRRLIYSPSFPP----------FLSLYALFSPKSNSSSTPIH-LFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRN  137 (387)
Q Consensus        69 ~W~~li~~~~f~~----------~~~l~~~~~~~~~~~~~~~~-~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~  137 (387)
                      +||++..+..-.+          ...|.+.++.   ...+-++ +++||..++.|.--.--..-|+            ..
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGG---GNEGiiDELHvYNTatnqWf~PavrGDiPp------------gc   82 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGG---GNEGIIDELHVYNTATNQWFAPAVRGDIPP------------GC   82 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecC---CcccchhhhhhhccccceeecchhcCCCCC------------ch
Confidence            7888876532211          1345554442   2223333 8999999999973221111111            13


Q ss_pred             cceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC-------CCCCCcceeEEEeCCEEEEEecCCCC-CC
Q 016552          138 LPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE-------LVTPRRWCAAGCSRGAVYVASGIGSQ-FS  209 (387)
Q Consensus       138 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~-~~  209 (387)
                      ..|.+++.+.+||+|||.... ....+++|.+-...=.|+++.+       .|.||..|+...+++|-|+|||..+. .+
T Consensus        83 AA~GfvcdGtrilvFGGMvEY-GkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD  161 (830)
T KOG4152|consen   83 AAFGFVCDGTRILVFGGMVEY-GKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED  161 (830)
T ss_pred             hhcceEecCceEEEEccEeee-ccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence            447788899999999996543 3456666655555557788643       56799999999999999999998553 11


Q ss_pred             -----CCCcceEEEEECCCCccccCeEEc---CCCCCCCccccceEEEEE------CCEEEEEeeeC----CeEEEEECC
Q 016552          210 -----SDVAKSVEKWDLMNGEKNSRWEKT---GELKDGRFSREAIDAVGW------KGKLCLVNVKG----AEGAVYDVV  271 (387)
Q Consensus       210 -----~~~~~~v~~yd~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~------~g~lyv~gg~~----~~i~~yD~~  271 (387)
                           ...++++.+.++..+..--.|+..   ..+|.+|.+   |.++.+      ..++|+.||..    .+++..|++
T Consensus       162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES---HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~  238 (830)
T KOG4152|consen  162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES---HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD  238 (830)
T ss_pred             cccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc---ceeEEEEeccCCcceEEEEcccccccccceeEEecc
Confidence                 145777777777644433338754   356656544   888877      24699999865    899999999


Q ss_pred             CCceeecc--cccccCCCCcEEEEeCCeEEEEeCC-------------------CCeEEEEeCCCCceeEccc-------
Q 016552          272 ANTWDDMR--EGMVRGWRGPVAAMDEEVLYGIDEN-------------------SCTLSRYDEVMDDWKEVVK-------  323 (387)
Q Consensus       272 ~~~W~~~~--~~~~~~~~~~~~~~~~~~ly~~~~~-------------------~~~l~~yd~~~~~W~~v~~-------  323 (387)
                      +.+|.+..  ...|..+.-+++.+.|+++|++||.                   ...+-++|.++..|+.+..       
T Consensus       239 Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~t  318 (830)
T KOG4152|consen  239 TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNT  318 (830)
T ss_pred             eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccc
Confidence            99999875  2345566678888899999999971                   1347889999999998752       


Q ss_pred             cccccCceEEEEeCCeEEEEecCC------------CeEEEEeccCCC
Q 016552          324 SDLLKGARHAAAGGGRVCAVCENG------------GGIVVVDVKAAA  359 (387)
Q Consensus       324 ~~~~~~~~~~~~~~g~i~v~gg~~------------~~i~~~d~~~~~  359 (387)
                      .|+.|..+|+++++.++|+-.|..            .++|.+|...-+
T Consensus       319 iPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp  366 (830)
T KOG4152|consen  319 IPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPP  366 (830)
T ss_pred             cccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCC
Confidence            356777899999999999998752            256777777443

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.80  E-value=2.9e-18  Score=154.88  Aligned_cols=210  Identities=15%  Similarity=0.127  Sum_probs=157.9

Q ss_pred             CEEEEEecccCCC--CCCCCccEEEeccCCceeeC--CCCCCCCcceeEEEeC-CEEEEEecCCCCCCC---CCcceEEE
Q 016552          147 GKLILLAATTHNF--NPALTRPLIFDPICRTWTFG--PELVTPRRWCAAGCSR-GAVYVASGIGSQFSS---DVAKSVEK  218 (387)
Q Consensus       147 ~~l~v~GG~~~~~--~~~~~~~~vyd~~t~~W~~l--~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~---~~~~~v~~  218 (387)
                      +.|+++||.....  .-..+++|+||..+++|+.+  |..|.||+.|.++++. |.+|++||.-...++   .--.++|.
T Consensus        79 eELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~  158 (521)
T KOG1230|consen   79 EELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWL  158 (521)
T ss_pred             ceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheee
Confidence            4789999854322  22457899999999999995  5667899888877775 789999997543222   12347899


Q ss_pred             EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---------CeEEEEECCCCceeeccccc--ccCCC
Q 016552          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGM--VRGWR  287 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~--~~~~~  287 (387)
                      ||..+++    |+++..-. ...+|..|-+++...+|+++||+-         +++++||+.+-+|+++.+.-  |.++.
T Consensus       159 fd~~trk----weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRS  233 (521)
T KOG1230|consen  159 FDLKTRK----WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRS  233 (521)
T ss_pred             eeeccch----heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCC
Confidence            9999999    99987322 224456699999999999999964         89999999999999997533  66677


Q ss_pred             CcEEEEe-CCeEEEEeCCC--------------CeEEEEeCCC-----CceeEcccc---ccccCceEE-EEeCCeEEEE
Q 016552          288 GPVAAMD-EEVLYGIDENS--------------CTLSRYDEVM-----DDWKEVVKS---DLLKGARHA-AAGGGRVCAV  343 (387)
Q Consensus       288 ~~~~~~~-~~~ly~~~~~~--------------~~l~~yd~~~-----~~W~~v~~~---~~~~~~~~~-~~~~g~i~v~  343 (387)
                      +++..+. .|.||++||.+              .+++..+++.     -.|..+.+.   |.+|..+.+ ++-+++-++|
T Consensus       234 Gcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~F  313 (521)
T KOG1230|consen  234 GCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFF  313 (521)
T ss_pred             cceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEe
Confidence            8877776 88999999732              2478888887     578887643   445555444 4556799999


Q ss_pred             ecC--------------CCeEEEEeccCCCCCCceE
Q 016552          344 CEN--------------GGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       344 gg~--------------~~~i~~~d~~~~~~~~~W~  365 (387)
                      ||-              .++++.||...+    .|.
T Consensus       314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~n----rW~  345 (521)
T KOG1230|consen  314 GGVCDLEEEEESLSGEFFNDLYFFDLTRN----RWS  345 (521)
T ss_pred             cceecccccchhhhhhhhhhhhheecccc----hhh
Confidence            982              368999999977    776

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.71  E-value=3.3e-16  Score=145.01  Aligned_cols=217  Identities=9%  Similarity=0.108  Sum_probs=158.1

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceee---CCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCc
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF---GPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~---l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  213 (387)
                      |.||.++++..-+++|||.+   +.-.+++++||..||+|..   ..+.|.+-..+..+..+.+||||||..+  .+...
T Consensus        33 RHGHRAVaikELiviFGGGN---EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvE--YGkYs  107 (830)
T KOG4152|consen   33 RHGHRAVAIKELIVIFGGGN---EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVE--YGKYS  107 (830)
T ss_pred             cccchheeeeeeEEEecCCc---ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEee--ecccc
Confidence            77899999999999999954   3567889999999999976   2356666667777788899999999865  23333


Q ss_pred             ceEEEEECCCCccccCeEEcCCCCC----CCccccceEEEEECCEEEEEeeeC--------------CeEEEEECCCC--
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKD----GRFSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVAN--  273 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~----~~~~~~~~~~~~~~g~lyv~gg~~--------------~~i~~yD~~~~--  273 (387)
                      +  +.|.+....  |.|..+.+-+.    +...|-.|+...+++|-|+|||-.              +++++.++..+  
T Consensus       108 N--dLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsg  183 (830)
T KOG4152|consen  108 N--DLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSG  183 (830)
T ss_pred             c--hHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCc
Confidence            3  346666555  33777753221    123344588889999999999843              67777777644  


Q ss_pred             --ceeecc--cccccCCCCcEEEEe------CCeEEEEeCCC----CeEEEEeCCCCceeEccc---cccccCceEEEEe
Q 016552          274 --TWDDMR--EGMVRGWRGPVAAMD------EEVLYGIDENS----CTLSRYDEVMDDWKEVVK---SDLLKGARHAAAG  336 (387)
Q Consensus       274 --~W~~~~--~~~~~~~~~~~~~~~------~~~ly~~~~~~----~~l~~yd~~~~~W~~v~~---~~~~~~~~~~~~~  336 (387)
                        .|...-  ...|..+..+.+++.      ..++|++||-+    +++|-.|.++-.|.+...   .|.+|..+.++.+
T Consensus       184 vv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I  263 (830)
T KOG4152|consen  184 VVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI  263 (830)
T ss_pred             eEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee
Confidence              587543  224556667777754      33799999843    579999999999998763   3556777888999


Q ss_pred             CCeEEEEecC-------------------CCeEEEEeccCCCCCCceEE
Q 016552          337 GGRVCAVCEN-------------------GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       337 ~g~i~v~gg~-------------------~~~i~~~d~~~~~~~~~W~~  366 (387)
                      ++++|||||-                   .+.+-.+++++.    .|+.
T Consensus       264 GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~----~W~t  308 (830)
T KOG4152|consen  264 GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM----AWET  308 (830)
T ss_pred             cceeEEecceeeeeccccccccccceeeeccceeeeeecch----heee
Confidence            9999999982                   245677888876    8883

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.63  E-value=1.9e-14  Score=128.65  Aligned_cols=235  Identities=15%  Similarity=0.165  Sum_probs=161.2

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCC--CCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC--
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVS--STWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF--  159 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~--~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--  159 (387)
                      .+|+-++.      ....||.+|...  ..|++++.+|..+              |.+...++++++||++||.....  
T Consensus        48 ~~YVGLGs------~G~afy~ldL~~~~k~W~~~a~FpG~~--------------rnqa~~a~~~~kLyvFgG~Gk~~~~  107 (381)
T COG3055          48 TVYVGLGS------AGTAFYVLDLKKPGKGWTKIADFPGGA--------------RNQAVAAVIGGKLYVFGGYGKSVSS  107 (381)
T ss_pred             eEEEEecc------CCccceehhhhcCCCCceEcccCCCcc--------------cccchheeeCCeEEEeeccccCCCC
Confidence            57776653      455688888765  6899999998842              55677889999999999975432  


Q ss_pred             -CCCCCccEEEeccCCceeeCCCC-CCCCcceeEEEeCC-EEEEEecCCCC-C---------------------------
Q 016552          160 -NPALTRPLIFDPICRTWTFGPEL-VTPRRWCAAGCSRG-AVYVASGIGSQ-F---------------------------  208 (387)
Q Consensus       160 -~~~~~~~~vyd~~t~~W~~l~~~-p~~r~~~~~~~~~~-~iyv~GG~~~~-~---------------------------  208 (387)
                       -...+++|+|||.+|+|.++... |..-..+.++..++ +||++||.+.. +                           
T Consensus       108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~  187 (381)
T COG3055         108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK  187 (381)
T ss_pred             CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence             23467889999999999998643 33345677777777 99999998532 1                           


Q ss_pred             ---CCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECC--CCceee
Q 016552          209 ---SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVV--ANTWDD  277 (387)
Q Consensus       209 ---~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~--~~~W~~  277 (387)
                         +-.....+..|||.+++    |+.+...|.-..+  ....+.-++++.++.|+-      ..+..+|..  ..+|..
T Consensus       188 ~~~dy~~n~ev~sy~p~~n~----W~~~G~~pf~~~a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~  261 (381)
T COG3055         188 KAEDYFFNKEVLSYDPSTNQ----WRNLGENPFYGNA--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK  261 (381)
T ss_pred             CHHHhcccccccccccccch----hhhcCcCcccCcc--CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence               00123467899999999    9999877743222  122333466788887753      445566665  448998


Q ss_pred             cccccccCCC------CcEEEEeCCeEEEEeCC------------------------CCeEEEEeCCCCceeEccccccc
Q 016552          278 MREGMVRGWR------GPVAAMDEEVLYGIDEN------------------------SCTLSRYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       278 ~~~~~~~~~~------~~~~~~~~~~ly~~~~~------------------------~~~l~~yd~~~~~W~~v~~~~~~  327 (387)
                      +++.++....      +.-.-..++.+.+.++.                        ..+|+++|  .+.|+.++.+|..
T Consensus       262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~  339 (381)
T COG3055         262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG  339 (381)
T ss_pred             ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC
Confidence            8753221111      11111335555555541                        12577777  8999999999997


Q ss_pred             cCceEEEEeCCeEEEEecC
Q 016552          328 KGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       328 ~~~~~~~~~~g~i~v~gg~  346 (387)
                      ..-.+++..+++|++|||.
T Consensus       340 l~YG~s~~~nn~vl~IGGE  358 (381)
T COG3055         340 LAYGVSLSYNNKVLLIGGE  358 (381)
T ss_pred             ccceEEEecCCcEEEEccc
Confidence            7777788899999999985

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.57  E-value=2.2e-13  Score=121.94  Aligned_cols=212  Identities=17%  Similarity=0.272  Sum_probs=154.1

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccC--CceeeCCCCC-CCCcceeEEEeCCEEEEEecCCCCCC--CCCcce
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPIC--RTWTFGPELV-TPRRWCAAGCSRGAVYVASGIGSQFS--SDVAKS  215 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t--~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~  215 (387)
                      +-+.+++.+||--|..+      .+.++.|...  +.|++++.+| .+|...++++++++|||+||......  ....++
T Consensus        41 ~Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd  114 (381)
T COG3055          41 AGALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFND  114 (381)
T ss_pred             ccceecceEEEEeccCC------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeee
Confidence            34557778999777333      3567777764  6899999998 57889999999999999999866322  345788


Q ss_pred             EEEEECCCCccccCeEEcCC-CCCCCccccceEEEEECC-EEEEEeeeC-------------------------------
Q 016552          216 VEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVGWKG-KLCLVNVKG-------------------------------  262 (387)
Q Consensus       216 v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~~g-~lyv~gg~~-------------------------------  262 (387)
                      +..||+.+|+    |..+.. .|....   .+.++.+++ ++|++||..                               
T Consensus       115 ~Y~y~p~~ns----W~kl~t~sP~gl~---G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~  187 (381)
T COG3055         115 AYRYDPSTNS----WHKLDTRSPTGLV---GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK  187 (381)
T ss_pred             eEEecCCCCh----hheeccccccccc---cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence            9999999999    999874 344433   266777777 899998854                               


Q ss_pred             --------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCC------CCeEEEEeC--CCCceeEcccccc
Q 016552          263 --------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDEN------SCTLSRYDE--VMDDWKEVVKSDL  326 (387)
Q Consensus       263 --------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~------~~~l~~yd~--~~~~W~~v~~~~~  326 (387)
                              ..+.+|||.+++|+.+...+-.+.++.+++.-++++.++.|+      +..++.++.  ..-+|..+.++|.
T Consensus       188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~  267 (381)
T COG3055         188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA  267 (381)
T ss_pred             CHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence                    678899999999998886455566677777778888888763      223555555  4568999988765


Q ss_pred             ccC-------ceEEEEeCCeEEEEecC------------------------CCeEEEEeccCCCCCCceEE--eCCCC
Q 016552          327 LKG-------ARHAAAGGGRVCAVCEN------------------------GGGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       327 ~~~-------~~~~~~~~g~i~v~gg~------------------------~~~i~~~d~~~~~~~~~W~~--~~p~~  371 (387)
                      ..+       .+-....+|.+.+.||.                        +.+|+++|  ++    .|++  .+|.+
T Consensus       268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g----~Wk~~GeLp~~  339 (381)
T COG3055         268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NG----SWKIVGELPQG  339 (381)
T ss_pred             CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CC----ceeeecccCCC
Confidence            432       12233456778888773                        14789999  34    8996  66654

>PF13964 Kelch_6: Kelch motif

Probab=99.17  E-value=8.2e-11  Score=77.77  Aligned_cols=49  Identities=22%  Similarity=0.361  Sum_probs=43.4

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR  186 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r  186 (387)
                      |.++++++++++||++||.... ....+++++||+.|++|+++++||.+|
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            4568999999999999997664 467889999999999999999999987

>PF13964 Kelch_6: Kelch motif

Probab=99.08  E-value=3.8e-10  Score=74.54  Aligned_cols=50  Identities=26%  Similarity=0.451  Sum_probs=44.5

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      ||.++++++++++|||+||....  ....+++++||+++++    |+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~----W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNT----WEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCc----EEECCCCCCCC
Confidence            68889999999999999999773  4567899999999999    99999999765

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.08  E-value=1.1e-07  Score=84.54  Aligned_cols=185  Identities=12%  Similarity=0.092  Sum_probs=114.8

Q ss_pred             CccEEEeccCCceeeCCCCCCCCc---c--eeEEE----eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRR---W--CAAGC----SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG  234 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~---~--~~~~~----~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~  234 (387)
                      ..++++||.|++|+.+|+.+.++.   .  .+.+.    -+.||..+.....  + .....+++|++.+++    |+.+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~--~-~~~~~~~Vys~~~~~----Wr~~~   86 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG--N-RNQSEHQVYTLGSNS----WRTIE   86 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC--C-CCCccEEEEEeCCCC----ccccc
Confidence            468999999999999987654311   1  11111    1226665544311  1 123478999999999    99988


Q ss_pred             CCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceee-cccccccC--CCCcEEEEeCCeEEEEeCCC-
Q 016552          235 ELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDD-MREGMVRG--WRGPVAAMDEEVLYGIDENS-  305 (387)
Q Consensus       235 ~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~-~~~~~~~~--~~~~~~~~~~~~ly~~~~~~-  305 (387)
                      ..+..... . ...+.++|.+|.+....     ..|.+||+.+++|++ ++......  .....++..+|+|.++.... 
T Consensus        87 ~~~~~~~~-~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~  164 (230)
T TIGR01640        87 CSPPHHPL-K-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD  164 (230)
T ss_pred             cCCCCccc-c-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC
Confidence            54322111 1 22788999999887543     169999999999995 65311111  11345667789998886432 


Q ss_pred             -C--eEEEEe-CCCCceeEcccccc-----ccC--ceEEEEeCCeEEEEecC--CCeEEEEeccC
Q 016552          306 -C--TLSRYD-EVMDDWKEVVKSDL-----LKG--ARHAAAGGGRVCAVCEN--GGGIVVVDVKA  357 (387)
Q Consensus       306 -~--~l~~yd-~~~~~W~~v~~~~~-----~~~--~~~~~~~~g~i~v~gg~--~~~i~~~d~~~  357 (387)
                       .  +||+.+ .+...|++.-..+.     ...  ....+..+|+|++....  +..+..||+.+
T Consensus       165 ~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~  229 (230)
T TIGR01640       165 TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE  229 (230)
T ss_pred             CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence             2  455554 33567998654431     111  13345677899998664  33389999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.88  E-value=2.9e-09  Score=69.28  Aligned_cols=47  Identities=28%  Similarity=0.423  Sum_probs=42.1

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552          185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p  237 (387)
                      ||..+++++.+++|||+||...  +....+++++||+.+++    |+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~----W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNT----WEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTE----EEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCE----EEEcCCCC
Confidence            5889999999999999999977  45678899999999999    99999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.83  E-value=3.6e-09  Score=68.85  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV  183 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p  183 (387)
                      |.++++++++++||++||... .....+++++||+.+++|+++++||
T Consensus         2 R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    2 RSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence            556899999999999999876 3467788999999999999999986

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.78  E-value=1.6e-08  Score=66.36  Aligned_cols=48  Identities=25%  Similarity=0.288  Sum_probs=42.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC  193 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~  193 (387)
                      ++++||+||.........+++++||+.+++|++++++|.+|..|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            578999999874335678999999999999999999999999988875

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.74  E-value=3.3e-08  Score=64.83  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=39.9

Q ss_pred             ccceEEEEECCEEEEEecc-cCCCCCCCCccEEEeccCCceeeCCCCC
Q 016552          137 NLPVQLVSLSGKLILLAAT-THNFNPALTRPLIFDPICRTWTFGPELV  183 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~-~~~~~~~~~~~~vyd~~t~~W~~l~~~p  183 (387)
                      |.++++++.+++||++||. ........+++++||+.|++|+++++|+
T Consensus         2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            5679999999999999998 2223566788999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.74  E-value=2.8e-05  Score=72.62  Aligned_cols=140  Identities=10%  Similarity=0.073  Sum_probs=78.1

Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccc----ccccC-C-CCcEEEEeCC
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE----GMVRG-W-RGPVAAMDEE  296 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~----~~~~~-~-~~~~~~~~~~  296 (387)
                      .+.    |+.+..+. ..+    ...+.++|++|+++..+ .++++|.+-. =.++..    .+..+ + .....+...|
T Consensus       189 ~~~----Wt~l~~~~-~~~----~DIi~~kGkfYAvD~~G-~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~G  257 (373)
T PLN03215        189 GNV----LKALKQMG-YHF----SDIIVHKGQTYALDSIG-IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCG  257 (373)
T ss_pred             CCe----eeEccCCC-cee----eEEEEECCEEEEEcCCC-eEEEEecCCc-eeeecceecccccCCcccCceeEEEECC
Confidence            367    99997433 222    45889999999996544 6777774321 111111    01111 1 1233556677


Q ss_pred             eEEEEeCC-----------------CC--eEEEEeCCCCceeEccccccc------cCceEEE------EeCCeEEEEec
Q 016552          297 VLYGIDEN-----------------SC--TLSRYDEVMDDWKEVVKSDLL------KGARHAA------AGGGRVCAVCE  345 (387)
Q Consensus       297 ~ly~~~~~-----------------~~--~l~~yd~~~~~W~~v~~~~~~------~~~~~~~------~~~g~i~v~gg  345 (387)
                      +|+++...                 ..  +|+..|.+..+|.++..+...      ...+++.      .-+|.||+.. 
T Consensus       258 dLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-  336 (373)
T PLN03215        258 ELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE-  336 (373)
T ss_pred             EEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC-
Confidence            88888641                 01  255668889999999987531      1122222      1246788772 


Q ss_pred             CCCeEEEEeccCCCCCCceEEeCCCCceeEE
Q 016552          346 NGGGIVVVDVKAAAAPTIFVVDTPLGFEALS  376 (387)
Q Consensus       346 ~~~~i~~~d~~~~~~~~~W~~~~p~~~~~~~  376 (387)
                       .....|||+..+ .+....+.+++..+.+.
T Consensus       337 -d~~~~v~~~~dg-~~~~~~~~~~~~~~~~~  365 (373)
T PLN03215        337 -DTMPKVFKLDNG-NGSSIETTISESSQSSF  365 (373)
T ss_pred             -CCcceEEECCCC-CccceEeecCccccchh
Confidence             344568888854 33445555555444433

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.73  E-value=2.4e-06  Score=75.95  Aligned_cols=201  Identities=13%  Similarity=0.113  Sum_probs=115.9

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeC
Q 016552          100 IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l  179 (387)
                      ..++++||.|+.|..+|+++..+..      +......+|+....-.-+++.+.....  ......+.+|+..+++|+.+
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~------~~~~~~~~G~d~~~~~YKVv~~~~~~~--~~~~~~~~Vys~~~~~Wr~~   85 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSN------KESDTYFLGYDPIEKQYKVLCFSDRSG--NRNQSEHQVYTLGSNSWRTI   85 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccc------cccceEEEeecccCCcEEEEEEEeecC--CCCCccEEEEEeCCCCcccc
Confidence            3588999999999999865431100      000000122222222336666654321  12335689999999999998


Q ss_pred             CCCCCC-CcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEE-cCCCCCCCc-cccceEEEEECCEEE
Q 016552          180 PELVTP-RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-TGELKDGRF-SREAIDAVGWKGKLC  256 (387)
Q Consensus       180 ~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~-~~~~p~~~~-~~~~~~~~~~~g~ly  256 (387)
                      .+.+.. ......+.++|.+|-+.....+   .....+..||..+++    |.+ ++ +|.... .......+.++|+|.
T Consensus        86 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~---~~~~~IvsFDl~~E~----f~~~i~-~P~~~~~~~~~~~L~~~~G~L~  157 (230)
T TIGR01640        86 ECSPPHHPLKSRGVCINGVLYYLAYTLKT---NPDYFIVSFDVSSER----FKEFIP-LPCGNSDSVDYLSLINYKGKLA  157 (230)
T ss_pred             ccCCCCccccCCeEEECCEEEEEEEECCC---CCcEEEEEEEcccce----Eeeeee-cCccccccccceEEEEECCEEE
Confidence            743321 1122267789999887643321   111268999999999    996 54 443321 111245677899999


Q ss_pred             EEeeeC----CeEEEEE-CCCCceeeccccc---ccCCC---CcEEEEeCCeEEEEeCC-CCe-EEEEeCCCC
Q 016552          257 LVNVKG----AEGAVYD-VVANTWDDMREGM---VRGWR---GPVAAMDEEVLYGIDEN-SCT-LSRYDEVMD  316 (387)
Q Consensus       257 v~gg~~----~~i~~yD-~~~~~W~~~~~~~---~~~~~---~~~~~~~~~~ly~~~~~-~~~-l~~yd~~~~  316 (387)
                      ++....    -++++.+ -....|++.-...   .....   .+..+..+|+|++.... .+. +..||++++
T Consensus       158 ~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       158 VLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            876532    3566654 3356798653211   11111   13445667788776643 234 889999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.72  E-value=4.2e-08  Score=64.32  Aligned_cols=49  Identities=22%  Similarity=0.387  Sum_probs=41.2

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552          185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p  237 (387)
                      +|..+++++.+++|||+||..........+++++||+++++    |+.++++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~----W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQ----WTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCE----EeecCCCC
Confidence            57889999999999999999222234577899999999999    99999775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.69  E-value=2.5e-08  Score=93.25  Aligned_cols=169  Identities=13%  Similarity=0.076  Sum_probs=117.0

Q ss_pred             eccCCceeeCCCC----------CCCCcceeEEEeCC--EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCC--
Q 016552          170 DPICRTWTFGPEL----------VTPRRWCAAGCSRG--AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE--  235 (387)
Q Consensus       170 d~~t~~W~~l~~~----------p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~--  235 (387)
                      .+.+-+|.++++.          |..|.+|.++...+  .||+.||.+.   -..+.+.|+|+...+.    |..+..  
T Consensus       235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~----W~~iN~~t  307 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQ----WTCINRDT  307 (723)
T ss_pred             ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc---chhHHHHHhhcCCcce----eEEeecCC
Confidence            3456788887643          45678888887755  8999999987   3456789999999999    998752  


Q ss_pred             -CCCCCccccceEEEEECC--EEEEEeeeC-----------CeEEEEECCCCceeecccc-----cccCCCCcEEEEeCC
Q 016552          236 -LKDGRFSREAIDAVGWKG--KLCLVNVKG-----------AEGAVYDVVANTWDDMREG-----MVRGWRGPVAAMDEE  296 (387)
Q Consensus       236 -~p~~~~~~~~~~~~~~~g--~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~-----~~~~~~~~~~~~~~~  296 (387)
                       .|..|   .+|-+|.--.  |+|++|-+-           .+++.||..++.|.-+...     -|.....+.+++.+.
T Consensus       308 ~~PG~R---sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~  384 (723)
T KOG2437|consen  308 EGPGAR---SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE  384 (723)
T ss_pred             CCCcch---hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence             44444   3366665444  799987542           7899999999999987632     222223456667666


Q ss_pred             e--EEEEeCCC--------CeEEEEeCCCCceeEcccccc----------ccCceEEEEe--CCeEEEEecCCC
Q 016552          297 V--LYGIDENS--------CTLSRYDEVMDDWKEVVKSDL----------LKGARHAAAG--GGRVCAVCENGG  348 (387)
Q Consensus       297 ~--ly~~~~~~--------~~l~~yd~~~~~W~~v~~~~~----------~~~~~~~~~~--~g~i~v~gg~~~  348 (387)
                      +  |||+||..        +.+++||.....|......-.          .|-.++|-.+  +..+|++||.+.
T Consensus       385 k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s  458 (723)
T KOG2437|consen  385 KHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS  458 (723)
T ss_pred             cceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence            6  99999831        469999999999987653211          1223444433  567899987654

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.67  E-value=4.8e-08  Score=91.41  Aligned_cols=186  Identities=12%  Similarity=0.056  Sum_probs=125.5

Q ss_pred             CCCeecCCCCCCCCcccccccCCCccccccceEEEEECC--EEEEEecccCCCCCCCCccEEEeccCCceeeCC---CCC
Q 016552          109 SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSG--KLILLAATTHNFNPALTRPLIFDPICRTWTFGP---ELV  183 (387)
Q Consensus       109 ~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~---~~p  183 (387)
                      +-+|..+++-...  .......   .+.|-||++|...+  +||+.||+++  ...+.++|.|+...+.|....   ..|
T Consensus       238 ~~~W~~i~~~~~~--~~~~~~~---p~~RgGHQMV~~~~~~CiYLYGGWdG--~~~l~DFW~Y~v~e~~W~~iN~~t~~P  310 (723)
T KOG2437|consen  238 KPRWSQIIPKSTK--GDGEDNR---PGMRGGHQMVIDVQTECVYLYGGWDG--TQDLADFWAYSVKENQWTCINRDTEGP  310 (723)
T ss_pred             cccccccCchhhc--ccccccC---ccccCcceEEEeCCCcEEEEecCccc--chhHHHHHhhcCCcceeEEeecCCCCC
Confidence            4578877654310  1001111   24578999999877  9999999988  567889999999999999854   478


Q ss_pred             CCCcceeEEEeCC--EEEEEecCCCC--C-CCCCcceEEEEECCCCccccCeEEcCCCCC---CCccccceEEEEECCE-
Q 016552          184 TPRRWCAAGCSRG--AVYVASGIGSQ--F-SSDVAKSVEKWDLMNGEKNSRWEKTGELKD---GRFSREAIDAVGWKGK-  254 (387)
Q Consensus       184 ~~r~~~~~~~~~~--~iyv~GG~~~~--~-~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~---~~~~~~~~~~~~~~g~-  254 (387)
                      ..|++|.++....  |+|+.|-+-..  . .....+++|+||..++.    |..+.--..   +....-.|.+++.+.+ 
T Consensus       311 G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~----W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~  386 (723)
T KOG2437|consen  311 GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT----WMLLSEDTAADGGPKLVFDHQMCVDSEKH  386 (723)
T ss_pred             cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce----eEEecccccccCCcceeecceeeEecCcc
Confidence            8999988887655  99999876331  1 11234689999999999    998762111   1111122678887777 


Q ss_pred             -EEEEeeeC--------CeEEEEECCCCceeecccccccC---------CCCcE--EEEeCCeEEEEeCCC
Q 016552          255 -LCLVNVKG--------AEGAVYDVVANTWDDMREGMVRG---------WRGPV--AAMDEEVLYGIDENS  305 (387)
Q Consensus       255 -lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~---------~~~~~--~~~~~~~ly~~~~~~  305 (387)
                       +||+||..        ..+++||.....|..........         +-+++  ....++.+|++++..
T Consensus       387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~  457 (723)
T KOG2437|consen  387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR  457 (723)
T ss_pred             eEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence             99999965        56899999999998765311100         01111  223466889988754

>smart00612 Kelch Kelch domain

Probab=98.64  E-value=4.7e-08  Score=63.34  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=40.0

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCC
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG  196 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~  196 (387)
                      +||++||...  ....+++++|||.+++|+++++|+.+|..++++++++
T Consensus         1 ~iyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG--GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCC--CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            4899999754  3567889999999999999999999999888887654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.63  E-value=1.7e-06  Score=77.53  Aligned_cols=144  Identities=19%  Similarity=0.178  Sum_probs=80.1

Q ss_pred             EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceE-EEEECCEEEEEeeeCCeEEEEECC
Q 016552          193 CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAID-AVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       193 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      -++.++.|.|..+.        ++.++|..+++         ++..-.....+.- ..+.+|.+ +....+.++-+.|+.
T Consensus       244 qyd~rviisGSSDs--------TvrvWDv~tge---------~l~tlihHceaVLhlrf~ng~m-vtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  244 QYDERVIVSGSSDS--------TVRVWDVNTGE---------PLNTLIHHCEAVLHLRFSNGYM-VTCSKDRSIAVWDMA  305 (499)
T ss_pred             eccceEEEecCCCc--------eEEEEeccCCc---------hhhHHhhhcceeEEEEEeCCEE-EEecCCceeEEEecc
Confidence            34778877765544        88999988887         1111111111111 22234433 334444677777766


Q ss_pred             CCceeecccccccCCCCcE-EEEeCCeEEEEeC-CCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCe
Q 016552          272 ANTWDDMREGMVRGWRGPV-AAMDEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG  349 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~-~~~~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~  349 (387)
                      +-+=.++.. ...+..++. ++-.+++ |++.. .+.+|.+|++.+.+....  +...+...+|..++|+++|-|...+.
T Consensus       306 sps~it~rr-VLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~efvRt--l~gHkRGIAClQYr~rlvVSGSSDnt  381 (499)
T KOG0281|consen  306 SPTDITLRR-VLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNT  381 (499)
T ss_pred             CchHHHHHH-HHhhhhhheeeeccccc-eEEEecCCceEEEEeccceeeehh--hhcccccceehhccCeEEEecCCCce
Confidence            543111111 112222222 2223556 55543 345799999988866553  33455567788899999998877777


Q ss_pred             EEEEeccCC
Q 016552          350 IVVVDVKAA  358 (387)
Q Consensus       350 i~~~d~~~~  358 (387)
                      |-+||++.+
T Consensus       382 IRlwdi~~G  390 (499)
T KOG0281|consen  382 IRLWDIECG  390 (499)
T ss_pred             EEEEecccc
Confidence            777777743

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.53  E-value=1e-07  Score=62.52  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             ccceEEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC
Q 016552          137 NLPVQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT  184 (387)
Q Consensus       137 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~  184 (387)
                      |.+|+++.+ ++.||++||.... ....+++++||+.+++|++++++|.
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~-~~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSS-GSPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS--
T ss_pred             cceEEEEEEeCCeEEEECCCCCC-CcccCCEEEEECCCCEEEECCCCCC
Confidence            566888888 5899999998763 2578899999999999999988873

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.53  E-value=1.1e-07  Score=62.29  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC
Q 016552          185 PRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK  237 (387)
Q Consensus       185 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p  237 (387)
                      ||..|+++.+ +++|||+||.+.  +...++++++||+.+++    |++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~--~~~~~~d~~~~d~~~~~----W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDS--SGSPLNDLWIFDIETNT----WTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE---TEE---EEEEETTTTE----EEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCC--CCcccCCEEEEECCCCE----EEECCCCC
Confidence            5888888887 589999999977  33578899999999999    99998887

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=98.48  E-value=0.00023  Score=67.02  Aligned_cols=142  Identities=16%  Similarity=0.212  Sum_probs=89.7

Q ss_pred             eEEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCC--CcceE
Q 016552          140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSD--VAKSV  216 (387)
Q Consensus       140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~v  216 (387)
                      ..++++ +.+|+.+...        ....+||+.|..-..+|.++.+.....+..++++||++..........  .....
T Consensus        69 ~~F~al~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   69 MDFFALHGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             eEEEEecCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE
Confidence            444454 8888888652        347999999999999999988877778888899999998764421111  00144


Q ss_pred             EEE--ECC----CCccccCeEEcCCCCCCCcccc----ceEEEEECC-EEEE-EeeeCCeEEEEECCCCceeeccccccc
Q 016552          217 EKW--DLM----NGEKNSRWEKTGELKDGRFSRE----AIDAVGWKG-KLCL-VNVKGAEGAVYDVVANTWDDMREGMVR  284 (387)
Q Consensus       217 ~~y--d~~----~~~~~~~W~~~~~~p~~~~~~~----~~~~~~~~g-~lyv-~gg~~~~i~~yD~~~~~W~~~~~~~~~  284 (387)
                      |++  ++.    .....|.|..+++.|.......    ..+-+++|| .|+| +.+.....++||.++.+|+...+ ...
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd-W~L  219 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGD-WML  219 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccc-eec
Confidence            555  421    2233466999887664432211    233345545 5665 33221258999999999999975 444


Q ss_pred             CCCCcE
Q 016552          285 GWRGPV  290 (387)
Q Consensus       285 ~~~~~~  290 (387)
                      ++.+.+
T Consensus       220 PF~G~a  225 (342)
T PF07893_consen  220 PFHGQA  225 (342)
T ss_pred             CcCCcc
Confidence            444433

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.47  E-value=9.6e-08  Score=61.99  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=32.2

Q ss_pred             CCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        43 ~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f   79 (387)
                      |..||+||+.+||++||   +.+++.|||+|+.++.++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l   40 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL   40 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence            67899999999999999   89999999999999988744

>smart00612 Kelch Kelch domain

Probab=98.36  E-value=8.5e-07  Score=57.29  Aligned_cols=47  Identities=23%  Similarity=0.370  Sum_probs=37.7

Q ss_pred             EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC
Q 016552          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG  253 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g  253 (387)
                      +||++||...   ....+++++||+.+++    |+.+++|+.++..   +++++++|
T Consensus         1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~----W~~~~~~~~~r~~---~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDG---GQRLKSVEVYDPETNK----WTPLPSMPTPRSG---HGVAVING   47 (47)
T ss_pred             CEEEEeCCCC---CceeeeEEEECCCCCe----EccCCCCCCcccc---ceEEEeCC
Confidence            5899999854   2456789999999999    9999999987754   66666654

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.36  E-value=1.3e-06  Score=57.23  Aligned_cols=48  Identities=23%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG  250 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  250 (387)
                      +++|||+||.+.. ....++++++||+.+++    |++++++|.+|..   |++++
T Consensus         1 g~~~~vfGG~~~~-~~~~~nd~~~~~~~~~~----W~~~~~~P~~R~~---h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDD-GGTRLNDVWVFDLDTNT----WTRIGDLPPPRSG---HTATV   48 (49)
T ss_pred             CCEEEEECCcCCC-CCCEecCEEEEECCCCE----EEECCCCCCCccc---eEEEE
Confidence            5799999999831 34677899999999999    9999999987765   66654

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.19  E-value=1.3e-06  Score=54.66  Aligned_cols=34  Identities=41%  Similarity=0.574  Sum_probs=32.2

Q ss_pred             ChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552           46 LPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        46 LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f   79 (387)
                      ||+|++.+||.+|+   +.+++.|||+|+.++.++.|
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~   37 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDF   37 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhh
Confidence            79999999999999   88999999999999998876

>PLN02772 guanylate kinase

Probab=98.07  E-value=2.8e-05  Score=72.98  Aligned_cols=81  Identities=14%  Similarity=0.107  Sum_probs=61.7

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeC---CCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCC
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG---PELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~  212 (387)
                      +.++.++++++++||+||.+.. ...+..+++||..|++|...   ...|.+|..|+++++ +++|+|+++....     
T Consensus        25 ~~~~tav~igdk~yv~GG~~d~-~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-----   98 (398)
T PLN02772         25 KNRETSVTIGDKTYVIGGNHEG-NTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-----   98 (398)
T ss_pred             CCcceeEEECCEEEEEcccCCC-ccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-----
Confidence            3457899999999999996652 23567899999999999984   466889999998888 5799999876542     


Q ss_pred             cceEEEEECCC
Q 016552          213 AKSVEKWDLMN  223 (387)
Q Consensus       213 ~~~v~~yd~~~  223 (387)
                      -+++|.....|
T Consensus        99 ~~~~w~l~~~t  109 (398)
T PLN02772         99 DDSIWFLEVDT  109 (398)
T ss_pred             ccceEEEEcCC
Confidence            13556555444

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.04  E-value=1.3e-06  Score=56.88  Aligned_cols=37  Identities=38%  Similarity=0.541  Sum_probs=30.7

Q ss_pred             CCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        43 ~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f   79 (387)
                      |..||+|++.+||.+|+   +.+++.|||+|+.++.+..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~   42 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL   42 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence            56799999999999999   99999999999999988644

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.04  E-value=0.0045  Score=59.68  Aligned_cols=218  Identities=12%  Similarity=0.129  Sum_probs=126.5

Q ss_pred             EEEEEeCCCC--CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCc--e
Q 016552          101 HLFTFDPVSS--TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--W  176 (387)
Q Consensus       101 ~~~~~d~~~~--~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W  176 (387)
                      .++++|.+++  .|+.-..-+.                  ....+..++.+|+..+        ...++.+|+.|++  |
T Consensus       131 ~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W  184 (394)
T PRK11138        131 QVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKW  184 (394)
T ss_pred             EEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECC--------CCEEEEEEccCCCEee
Confidence            5788998764  5864221111                  0123445777777433        1358999998874  8


Q ss_pred             eeCCCCCC--CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC-----CccccceEEE
Q 016552          177 TFGPELVT--PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG-----RFSREAIDAV  249 (387)
Q Consensus       177 ~~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~-----~~~~~~~~~~  249 (387)
                      +.-...+.  .+...+.++.++.+|+..+.         ..+..+|..+++..  |+.-...|..     +.......-+
T Consensus       185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~--W~~~~~~~~~~~~~~~~~~~~~sP~  253 (394)
T PRK11138        185 TVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLI--WQQRISQPTGATEIDRLVDVDTTPV  253 (394)
T ss_pred             eecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhh--heeccccCCCccchhcccccCCCcE
Confidence            76433221  12233445567777775321         25677888887755  8753222211     0000012345


Q ss_pred             EECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEccccc
Q 016552          250 GWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSD  325 (387)
Q Consensus       250 ~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~  325 (387)
                      +.++.+|+.+.. ..+.++|+.++  .|+.--.   .   ....++.+++||+... ++.++++|.+++  .|+.-....
T Consensus       254 v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~---~---~~~~~~~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~  325 (394)
T PRK11138        254 VVGGVVYALAYN-GNLVALDLRSGQIVWKREYG---S---VNDFAVDGGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLH  325 (394)
T ss_pred             EECCEEEEEEcC-CeEEEEECCCCCEEEeecCC---C---ccCcEEECCEEEEEcC-CCeEEEEECCCCcEEEcccccCC
Confidence            679999987644 48999999987  4875321   1   1134567889998764 688999999876  475421111


Q ss_pred             cccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEeC
Q 016552          326 LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       326 ~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~~  368 (387)
                      .  .....+..+|+||+. ...+.++++|..++  .-.|+...
T Consensus       326 ~--~~~sp~v~~g~l~v~-~~~G~l~~ld~~tG--~~~~~~~~  363 (394)
T PRK11138        326 R--LLTAPVLYNGYLVVG-DSEGYLHWINREDG--RFVAQQKV  363 (394)
T ss_pred             C--cccCCEEECCEEEEE-eCCCEEEEEECCCC--CEEEEEEc
Confidence            1  112234568888876 44557888998754  23577643

>PF13854 Kelch_5: Kelch motif

Probab=98.01  E-value=1.8e-05  Score=49.80  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          182 LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       182 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +|.+|..|++++++++||++||... .+....+++++||..+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            4789999999999999999999984 1345678999999876

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.00  E-value=0.0059  Score=58.87  Aligned_cols=206  Identities=14%  Similarity=0.072  Sum_probs=116.3

Q ss_pred             EEEEEeCCCC--CeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ce
Q 016552          101 HLFTFDPVSS--TWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TW  176 (387)
Q Consensus       101 ~~~~~d~~~~--~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W  176 (387)
                      .++++|+.++  .|+.-...+.   .          ..+.....+..++.+|+..+ +       ..++.+|+.+.  .|
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~---~----------~~~~~~sP~v~~~~v~~~~~-~-------g~v~a~d~~~G~~~W  229 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPS---L----------TLRGESAPATAFGGAIVGGD-N-------GRVSAVLMEQGQLIW  229 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCc---c----------cccCCCCCEEECCEEEEEcC-C-------CEEEEEEccCChhhh
Confidence            5788898875  4764322221   0          00000123445666666433 1       24777888876  47


Q ss_pred             eeCCCCCCC-----C---cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEE
Q 016552          177 TFGPELVTP-----R---RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDA  248 (387)
Q Consensus       177 ~~l~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~  248 (387)
                      +.-...+..     |   .....++.++.+|+.+..         ..+.++|..+++..  |+.-.  ...      ...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~---------g~l~ald~~tG~~~--W~~~~--~~~------~~~  290 (394)
T PRK11138        230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN---------GNLVALDLRSGQIV--WKREY--GSV------NDF  290 (394)
T ss_pred             eeccccCCCccchhcccccCCCcEEECCEEEEEEcC---------CeEEEEECCCCCEE--EeecC--CCc------cCc
Confidence            642111110     1   123445678899986421         26788999888755  87532  111      124


Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eeEcccc
Q 016552          249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD--WKEVVKS  324 (387)
Q Consensus       249 ~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~--W~~v~~~  324 (387)
                      +..+++||+....+ .+.++|++++  .|+.-..   ......+.++.+++||+.+ .+|.++++|.++++  |+.-.  
T Consensus       291 ~~~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~~---~~~~~~sp~v~~g~l~v~~-~~G~l~~ld~~tG~~~~~~~~--  363 (394)
T PRK11138        291 AVDGGRIYLVDQND-RVYALDTRGGVELWSQSDL---LHRLLTAPVLYNGYLVVGD-SEGYLHWINREDGRFVAQQKV--  363 (394)
T ss_pred             EEECCEEEEEcCCC-eEEEEECCCCcEEEccccc---CCCcccCCEEECCEEEEEe-CCCEEEEEECCCCCEEEEEEc--
Confidence            56789999886554 7999999877  4864321   1122233455788998765 46889999998874  54311  


Q ss_pred             ccccCceEEEEeCCeEEEEecCCCeEEEEe
Q 016552          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       325 ~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d  354 (387)
                      .........+..+++||+. ..++.++.++
T Consensus       364 ~~~~~~s~P~~~~~~l~v~-t~~G~l~~~~  392 (394)
T PRK11138        364 DSSGFLSEPVVADDKLLIQ-ARDGTVYAIT  392 (394)
T ss_pred             CCCcceeCCEEECCEEEEE-eCCceEEEEe
Confidence            1111122234568888777 4444566654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.91  E-value=0.012  Score=52.14  Aligned_cols=185  Identities=16%  Similarity=0.220  Sum_probs=111.6

Q ss_pred             EEEECCEEEEEecccCCCCCCCCccEEEeccCCc--eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      .+..++.+|+..+        ...++.+|+.|++  |+.-.  +.+- .......+++||+....         ..+.++
T Consensus        32 ~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~~-~~~~~~~~~~v~v~~~~---------~~l~~~   91 (238)
T PF13360_consen   32 AVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGPI-SGAPVVDGGRVYVGTSD---------GSLYAL   91 (238)
T ss_dssp             EEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSCG-GSGEEEETTEEEEEETT---------SEEEEE
T ss_pred             EEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--cccc-cceeeecccccccccce---------eeeEec
Confidence            3447888888743        1468999998874  66532  2221 22247778899887521         277899


Q ss_pred             ECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCC--------C
Q 016552          220 DLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWR--------G  288 (387)
Q Consensus       220 d~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~--------~  288 (387)
                      |..+++..  |+ .....+..... ......+.++.+|+... ...+.++|++++  .|+.--. .+....        .
T Consensus        92 d~~tG~~~--W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen   92 DAKTGKVL--WSIYLTSSPPAGVR-SSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDIN  166 (238)
T ss_dssp             ETTTSCEE--EEEEE-SSCTCSTB---SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEE
T ss_pred             ccCCccee--eeeccccccccccc-cccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccc
Confidence            98888866  98 44432222111 11334445777776643 348999999987  4765432 222111        1


Q ss_pred             cEEEEeCCeEEEEeCCCCeEEEEeCCCCc--eeEccccccccCceE-EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          289 PVAAMDEEVLYGIDENSCTLSRYDEVMDD--WKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~~~~~~ly~~~~~~~~l~~yd~~~~~--W~~v~~~~~~~~~~~-~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...++.++.+|+... .+.+..+|.+++.  |+..     ...... ....++.||+.. ....++.+|.+++
T Consensus       167 ~~~~~~~~~v~~~~~-~g~~~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  167 GSPVISDGRVYVSSG-DGRVVAVDLATGEKLWSKP-----ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             EEEECCTTEEEEECC-TSSEEEEETTTTEEEEEEC-----SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred             cceEEECCEEEEEcC-CCeEEEEECCCCCEEEEec-----CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence            334455678888764 4446777999986  7332     111222 456677777775 7788999999965

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.91  E-value=0.0027  Score=56.88  Aligned_cols=200  Identities=20%  Similarity=0.173  Sum_probs=116.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.||+..-       .-..++.+|+.+++-..... +.   ...++.  -++++|++...          ...++|+.+
T Consensus        11 ~g~l~~~D~-------~~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~   69 (246)
T PF08450_consen   11 DGRLYWVDI-------PGGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADSG----------GIAVVDPDT   69 (246)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEETT----------CEEEEETTT
T ss_pred             CCEEEEEEc-------CCCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEcC----------ceEEEecCC
Confidence            578888743       22578999999987665321 22   122222  36899988543          336679999


Q ss_pred             CccccCeEEcCCCCCC--CccccceEEEEECCEEEEEeeeC--------CeEEEEECCCCceeecccccccCCCCcEEEE
Q 016552          224 GEKNSRWEKTGELKDG--RFSREAIDAVGWKGKLCLVNVKG--------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~--~~~~~~~~~~~~~g~lyv~gg~~--------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      ++    ++.+...+..  ...+.+-.++--+|.+|+.....        ..++.+++. ++.+.+...+..   ...+++
T Consensus        70 g~----~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~  141 (246)
T PF08450_consen   70 GK----VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAF  141 (246)
T ss_dssp             TE----EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEE
T ss_pred             Cc----EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEE
Confidence            98    8888765321  12222233445578999875432        358889988 666555432221   123333


Q ss_pred             e--CCeEEEEeCCCCeEEEEeCCCCc--eeEcc---ccccccC-c-eEEEEeCCeEEEEecCCCeEEEEeccCCCCCCce
Q 016552          294 D--EEVLYGIDENSCTLSRYDEVMDD--WKEVV---KSDLLKG-A-RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIF  364 (387)
Q Consensus       294 ~--~~~ly~~~~~~~~l~~yd~~~~~--W~~v~---~~~~~~~-~-~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W  364 (387)
                      .  ++.||+.+...+.|++||.....  +....   ..+...+ + ..++--+|+||+..-.+..|.+||+..+    .-
T Consensus       142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~----~~  217 (246)
T PF08450_consen  142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK----LL  217 (246)
T ss_dssp             ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC----EE
T ss_pred             CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc----EE
Confidence            2  44688888777899999986443  33222   2222221 2 2233347899998778899999999954    55


Q ss_pred             E-EeCCCCceeEEEEE
Q 016552          365 V-VDTPLGFEALSVHI  379 (387)
Q Consensus       365 ~-~~~p~~~~~~~~~~  379 (387)
                      . +.+|.. +...+.+
T Consensus       218 ~~i~~p~~-~~t~~~f  232 (246)
T PF08450_consen  218 REIELPVP-RPTNCAF  232 (246)
T ss_dssp             EEEE-SSS-SEEEEEE
T ss_pred             EEEcCCCC-CEEEEEE
Confidence            5 366633 4444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02772 guanylate kinase

Probab=97.89  E-value=0.00011  Score=69.14  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeC
Q 016552          184 TPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG  262 (387)
Q Consensus       184 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~  262 (387)
                      .++..++++.+++++||+||.++  .....+.+++||..+.+    |....-+..+..+|..|+++++ +++|+++....
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~----W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNN----WVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCC--CccccceEEEEECCCCc----EecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            36777889999999999999766  23356799999999999    9977633333344556888877 67899987543


Q ss_pred             ---CeEEEEECCC
Q 016552          263 ---AEGAVYDVVA  272 (387)
Q Consensus       263 ---~~i~~yD~~~  272 (387)
                         .++|.....|
T Consensus        97 ~~~~~~w~l~~~t  109 (398)
T PLN02772         97 APDDSIWFLEVDT  109 (398)
T ss_pred             CCccceEEEEcCC
Confidence               5566655544

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.80  E-value=0.00047  Score=61.01  Aligned_cols=150  Identities=12%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             cEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC-CCCCCCcc
Q 016552          166 PLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFS  242 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~  242 (387)
                      ..+||+.|++++.+...  .-.+|+..  .-+|++.++||...     ..+.+..|++.+....+.|.+.+ .|-.+|+-
T Consensus        48 s~~yD~~tn~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEecCCCcEEeccCC--CCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceECcccccCCCcc
Confidence            47899999999977532  22233333  34789999999755     23467788887611112298876 47777754


Q ss_pred             ccceEEEEECCEEEEEeeeCCeEEEEECC-CC-----ceeeccc---ccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeC
Q 016552          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVV-AN-----TWDDMRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDE  313 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~-~~-----~W~~~~~---~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~  313 (387)
                      ..  ....-||+++|+||.....+.|-|. ..     .|..+..   ..+..+.-.....-+|+||+++..  .-..||.
T Consensus       121 pT--~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~  196 (243)
T PF07250_consen  121 PT--ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDY  196 (243)
T ss_pred             cc--ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeC
Confidence            22  2334489999999987433334343 21     1222221   112223334455668899999754  4577899


Q ss_pred             CCCce-eEcccccc
Q 016552          314 VMDDW-KEVVKSDL  326 (387)
Q Consensus       314 ~~~~W-~~v~~~~~  326 (387)
                      .++++ +.+..+|.
T Consensus       197 ~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  197 KTNTVVRTLPDLPG  210 (243)
T ss_pred             CCCeEEeeCCCCCC
Confidence            99976 55555553

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.78  E-value=0.017  Score=55.31  Aligned_cols=162  Identities=15%  Similarity=0.089  Sum_probs=93.3

Q ss_pred             ccEEEeccCC--ceeeCCCCCCC-----C---cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC
Q 016552          165 RPLIFDPICR--TWTFGPELVTP-----R---RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG  234 (387)
Q Consensus       165 ~~~vyd~~t~--~W~~l~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~  234 (387)
                      .++.+|+.+.  .|+.-...+..     +   ........++.||+....         ..+.+||..+++..  |..-.
T Consensus       201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~--W~~~~  269 (377)
T TIGR03300       201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVL--WKRDA  269 (377)
T ss_pred             EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEE--Eeecc
Confidence            5788898876  57652221211     1   122334567888886421         26788999888755  87542


Q ss_pred             CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEe
Q 016552          235 ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYD  312 (387)
Q Consensus       235 ~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd  312 (387)
                        +.  .    ...++.++++|+.... ..+.++|..++  .|+....  . .....+.++.++.||+.+ .+|.++++|
T Consensus       270 --~~--~----~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~--~-~~~~ssp~i~g~~l~~~~-~~G~l~~~d  336 (377)
T TIGR03300       270 --SS--Y----QGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDEL--K-YRQLTAPAVVGGYLVVGD-FEGYLHWLS  336 (377)
T ss_pred             --CC--c----cCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccc--c-CCccccCEEECCEEEEEe-CCCEEEEEE
Confidence              11  1    2234668999987644 37999999876  5865321  1 111223345678888765 478999999


Q ss_pred             CCCCc--eeEccccccccCceEEEEeCCeEEEEecCCCeEEEE
Q 016552          313 EVMDD--WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV  353 (387)
Q Consensus       313 ~~~~~--W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~  353 (387)
                      .++++  |+.-  ..........+..+++||+.+. ++.++.|
T Consensus       337 ~~tG~~~~~~~--~~~~~~~~sp~~~~~~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       337 REDGSFVARLK--TDGSGIASPPVVVGDGLLVQTR-DGDLYAF  376 (377)
T ss_pred             CCCCCEEEEEE--cCCCccccCCEEECCEEEEEeC-CceEEEe
Confidence            97763  4221  1111112334567788776643 4445543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.67  E-value=0.02  Score=50.71  Aligned_cols=179  Identities=21%  Similarity=0.204  Sum_probs=106.5

Q ss_pred             ccEEEeccCC--ceeeCCCCCCCCccee--EEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          165 RPLIFDPICR--TWTFGPELVTPRRWCA--AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~--~W~~l~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      .+..+|+.++  .|+.  .+........  ....++.+|+..+         ...+.++|..+++..  |+.-.+  .+.
T Consensus         4 ~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~--W~~~~~--~~~   68 (238)
T PF13360_consen    4 TLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVL--WRFDLP--GPI   68 (238)
T ss_dssp             EEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEE--EEEECS--SCG
T ss_pred             EEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEE--EEeecc--ccc
Confidence            4577787666  4776  2221233333  4447889998832         137789999888855  776552  221


Q ss_pred             ccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceee-ccccccc-CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDD-MREGMVR-GWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       241 ~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~-~~~~~~~-~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                      .    ...+..++.+|+....+ .+.++|.+++  .|+. ....... .......++.++.+|+.. ..+.|+++|++++
T Consensus        69 ~----~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG  142 (238)
T PF13360_consen   69 S----GAPVVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTG  142 (238)
T ss_dssp             G----SGEEEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTT
T ss_pred             c----ceeeeccccccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCC
Confidence            1    11467799998886443 8999998877  5983 4321111 223445556677776664 3789999999876


Q ss_pred             --ceeEcccccccc--------CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEe
Q 016552          317 --DWKEVVKSDLLK--------GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       317 --~W~~v~~~~~~~--------~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~  367 (387)
                        .|..-...++..        ....++..++.+|+..+.+. ++.+|..++  ...|...
T Consensus       143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg--~~~w~~~  200 (238)
T PF13360_consen  143 KLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATG--EKLWSKP  200 (238)
T ss_dssp             EEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTT--EEEEEEC
T ss_pred             cEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCC--CEEEEec
Confidence              477644433311        12444555688888755554 555588865  1238544

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.64  E-value=0.015  Score=55.56  Aligned_cols=193  Identities=16%  Similarity=0.211  Sum_probs=107.8

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEE
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      ..+..++.+|+.+..        ..++.+|+.|+  .|+.--.-   +.....++.++++|+.+. +        ..+.+
T Consensus        60 ~p~v~~~~v~v~~~~--------g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v~~~~v~v~~~-~--------g~l~a  119 (377)
T TIGR03300        60 QPAVAGGKVYAADAD--------GTVVALDAETGKRLWRVDLDE---RLSGGVGADGGLVFVGTE-K--------GEVIA  119 (377)
T ss_pred             ceEEECCEEEEECCC--------CeEEEEEccCCcEeeeecCCC---CcccceEEcCCEEEEEcC-C--------CEEEE
Confidence            456678888876531        25899998876  48752211   112234455778887532 1        26788


Q ss_pred             EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccC-CCCcEEEEeC
Q 016552          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRG-WRGPVAAMDE  295 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~-~~~~~~~~~~  295 (387)
                      +|..+++..  |+.-..  ....    ...+..++++|+.... ..+.++|++++  .|+......... ....+.++.+
T Consensus       120 ld~~tG~~~--W~~~~~--~~~~----~~p~v~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~  190 (377)
T TIGR03300       120 LDAEDGKEL--WRAKLS--SEVL----SPPLVANGLVVVRTND-GRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD  190 (377)
T ss_pred             EECCCCcEe--eeeccC--ceee----cCCEEECCEEEEECCC-CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence            999887755  875431  1111    2234568888876543 47999999877  587543211111 1123344556


Q ss_pred             CeEEEEeCCCCeEEEEeCCCC--ceeEcccccc-------c-cCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceE
Q 016552          296 EVLYGIDENSCTLSRYDEVMD--DWKEVVKSDL-------L-KGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~~-------~-~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~  365 (387)
                      +.+| ++..++.++++|++++  .|+.-...+.       . ......+..++.+|+. ..++.++.+|..++  ...|.
T Consensus       191 ~~v~-~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~-~~~g~l~a~d~~tG--~~~W~  266 (377)
T TIGR03300       191 GGVL-VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAV-SYQGRVAALDLRSG--RVLWK  266 (377)
T ss_pred             CEEE-EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEE-EcCCEEEEEECCCC--cEEEe
Confidence            6655 4445688999999876  4764221111       0 0011223346666665 33456777777643  23566


Q ss_pred             E
Q 016552          366 V  366 (387)
Q Consensus       366 ~  366 (387)
                      .
T Consensus       267 ~  267 (377)
T TIGR03300       267 R  267 (377)
T ss_pred             e
Confidence            4

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13854 Kelch_5: Kelch motif

Probab=97.63  E-value=0.00013  Score=45.77  Aligned_cols=38  Identities=11%  Similarity=0.072  Sum_probs=31.8

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCC
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR  174 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~  174 (387)
                      |.+|++++++++||++||.........+++|+||..+.
T Consensus         5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            77899999999999999987433567889999998763

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.61  E-value=0.001  Score=58.83  Aligned_cols=135  Identities=10%  Similarity=0.094  Sum_probs=88.6

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCC----CceeecccccccC-C
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVA----NTWDDMREGMVRG-W  286 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~----~~W~~~~~~~~~~-~  286 (387)
                      ...+||+.+++    ++.+.. ....++.  ..+..-||++.+.||..   ..+..|++.+    ..|.+....|..+ |
T Consensus        47 ~s~~yD~~tn~----~rpl~v-~td~FCS--gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   47 HSVEYDPNTNT----FRPLTV-QTDTFCS--GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEEecCCCc----EEeccC-CCCCccc--CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence            45679999999    988763 3333431  12344589999999875   6688899876    6799887545555 4


Q ss_pred             CCcEEEEeCCeEEEEeCCCCeEEEEeCCCC---ceeEc---cc----cccccCceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552          287 RGPVAAMDEEVLYGIDENSCTLSRYDEVMD---DWKEV---VK----SDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       287 ~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~---~W~~v---~~----~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      .......-+|+++++||...-.+.|-++..   ....+   ..    .+...-++.-+.-+|+||+++..+  ..+||..
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~  197 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYK  197 (243)
T ss_pred             cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCC
Confidence            555666778999999997654555545421   11111   11    122233577778899999996653  5666888


Q ss_pred             CC
Q 016552          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       198 ~n  199 (243)
T PF07250_consen  198 TN  199 (243)
T ss_pred             CC
Confidence            76

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.47  E-value=0.009  Score=53.50  Aligned_cols=164  Identities=19%  Similarity=0.079  Sum_probs=90.5

Q ss_pred             EEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC---C--CcceeEEEeCCEEEEEecCCCCCCCCCc
Q 016552          141 QLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT---P--RRWCAAGCSRGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       141 ~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~---~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~  213 (387)
                      .++..  ++.+|+...         ....++|+.+++++.+...+.   +  +..-.++.-+|+||+..-..........
T Consensus        44 G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~  114 (246)
T PF08450_consen   44 GMAFDRPDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP  114 (246)
T ss_dssp             EEEEECTTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred             eEEEEccCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence            44444  677887754         234777999999998776631   2  2233344447889987433221011111


Q ss_pred             ceEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCCc--eeecccc--cccCC-
Q 016552          214 KSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANT--WDDMREG--MVRGW-  286 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~--W~~~~~~--~~~~~-  286 (387)
                      ..+..+++. .+    ...+. .+..+     +..+..-++ .||+.......++.||+....  +......  ..... 
T Consensus       115 g~v~~~~~~-~~----~~~~~~~~~~p-----NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g  184 (246)
T PF08450_consen  115 GSVYRIDPD-GK----VTVVADGLGFP-----NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG  184 (246)
T ss_dssp             EEEEEEETT-SE----EEEEEEEESSE-----EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred             cceEEECCC-Ce----EEEEecCcccc-----cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence            568888888 55    44443 22211     122333455 478776666789999986443  3322210  11111 


Q ss_pred             CCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccc
Q 016552          287 RGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       287 ~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~  323 (387)
                      ....+++ .+|.||+.....+.|.+||++...-..+..
T Consensus       185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~  222 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL  222 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-
T ss_pred             CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC
Confidence            1123444 367899987667899999999665555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.28  E-value=0.065  Score=48.76  Aligned_cols=171  Identities=17%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             ccEEEeccCCceeeCCCCC-CCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELV-TPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p-~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .+.+||+.+++-...-... .++  .....-++ .+|+.++.+        ..+.+||..+.+    ....-.....  .
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~~~--~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~--~   75 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQRPR--GITLSKDGKLLYVCASDS--------DTIQVIDLATGE----VIGTLPSGPD--P   75 (300)
T ss_pred             EEEEEECCCCceEEEEECCCCCC--ceEECCCCCEEEEEECCC--------CeEEEEECCCCc----EEEeccCCCC--c
Confidence            6788888776543321111 122  11222244 567776532        267889998877    5432111111  1


Q ss_pred             ccceEEEEECC-EEEEEeeeCCeEEEEECCCCce-eecccccccCCCCcEEEE-eCCeEEEEeCCC-CeEEEEeCCCCce
Q 016552          243 REAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAM-DEEVLYGIDENS-CTLSRYDEVMDDW  318 (387)
Q Consensus       243 ~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~-~~l~~yd~~~~~W  318 (387)
                        ......-++ .+|+.++.+..+.+||+.+.+- ..++.    +.....+++ .++.+++++... ..+..||.++.+-
T Consensus        76 --~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~  149 (300)
T TIGR03866        76 --ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI  149 (300)
T ss_pred             --cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence              121222244 4666655456899999987542 12211    111122333 355666655433 3466788876533


Q ss_pred             eEccccccccCceEEEEeCCeEEEEec-CCCeEEEEeccCC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg-~~~~i~~~d~~~~  358 (387)
                      ...... ...........+++.+++++ .++.+.+||..+.
T Consensus       150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       150 VDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             EEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            221111 11112223344566554544 4677899998854

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.24  E-value=0.032  Score=52.60  Aligned_cols=117  Identities=8%  Similarity=-0.016  Sum_probs=75.2

Q ss_pred             eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----C-----
Q 016552          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----A-----  263 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~-----  263 (387)
                      .++||+.++..         ..+.+||.++..    -...|.+..+...   ..++.++++||++....     .     
T Consensus        75 ~gskIv~~d~~---------~~t~vyDt~t~a----v~~~P~l~~pk~~---pisv~VG~~LY~m~~~~~~~~~~~~~~~  138 (342)
T PF07893_consen   75 HGSKIVAVDQS---------GRTLVYDTDTRA----VATGPRLHSPKRC---PISVSVGDKLYAMDRSPFPEPAGRPDFP  138 (342)
T ss_pred             cCCeEEEEcCC---------CCeEEEECCCCe----EeccCCCCCCCcc---eEEEEeCCeEEEeeccCccccccCccce
Confidence            58899887543         246889999999    7767766655433   45677899999997653     1     


Q ss_pred             eEEEE--EC--------CCCceeecccccccCCC-------CcEEEEe-CCeEEEEe-CCCCeEEEEeCCCCceeEccc-
Q 016552          264 EGAVY--DV--------VANTWDDMREGMVRGWR-------GPVAAMD-EEVLYGID-ENSCTLSRYDEVMDDWKEVVK-  323 (387)
Q Consensus       264 ~i~~y--D~--------~~~~W~~~~~~~~~~~~-------~~~~~~~-~~~ly~~~-~~~~~l~~yd~~~~~W~~v~~-  323 (387)
                      ..+++  ++        ..-.|+.++. +|....       ..+-+++ |..|++-. +.....+.||+++.+|++++. 
T Consensus       139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW  217 (342)
T PF07893_consen  139 CFEALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDW  217 (342)
T ss_pred             eEEEeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccce
Confidence            44444  42        1226778775 333221       2344455 66777732 211258999999999999983 


Q ss_pred             -cccc
Q 016552          324 -SDLL  327 (387)
Q Consensus       324 -~~~~  327 (387)
                       +|..
T Consensus       218 ~LPF~  222 (342)
T PF07893_consen  218 MLPFH  222 (342)
T ss_pred             ecCcC
Confidence             5543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.24  E-value=0.15  Score=46.32  Aligned_cols=182  Identities=16%  Similarity=0.040  Sum_probs=86.9

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceee-CCCCCCCCcceeEEEeC-CEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTF-GPELVTPRRWCAAGCSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~-l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      .+|+.++.+       ..+.+||..+.+... ++....++  ..+..-+ +.+|+.++.+        ..+.+||..+.+
T Consensus        44 ~l~~~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~  106 (300)
T TIGR03866        44 LLYVCASDS-------DTIQVIDLATGEVIGTLPSGPDPE--LFALHPNGKILYIANEDD--------NLVTVIDIETRK  106 (300)
T ss_pred             EEEEEECCC-------CeEEEEECCCCcEEEeccCCCCcc--EEEECCCCCEEEEEcCCC--------CeEEEEECCCCe
Confidence            466665421       358889998877654 32211221  1122223 4566665422        267889988765


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEE-EeCCe-EEEEe
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEV-LYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~-ly~~~  302 (387)
                      .   -..++   .....  ......-+|++++++... ..+..||..+.+-....   ..+.....++ ..+++ ||+.+
T Consensus       107 ~---~~~~~---~~~~~--~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       107 V---LAEIP---VGVEP--EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---LVDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             E---EeEee---CCCCc--ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---EcCCCccEEEECCCCCEEEEEc
Confidence            1   12221   11110  122233467666665543 45667888765432110   1111111222 23444 44443


Q ss_pred             CCCCeEEEEeCCCCceeE-ccc-ccc----ccCceEE-EEeCCe-EEEEecCCCeEEEEeccC
Q 016552          303 ENSCTLSRYDEVMDDWKE-VVK-SDL----LKGARHA-AAGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~-v~~-~~~----~~~~~~~-~~~~g~-i~v~gg~~~~i~~~d~~~  357 (387)
                      ...+.+..||.++.+... +.. .+.    ......+ ..-+++ +|+..+..+.+.++|..+
T Consensus       176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            346789999998765422 111 010    0111122 233454 455545566788888863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.20  E-value=0.13  Score=45.45  Aligned_cols=184  Identities=15%  Similarity=0.102  Sum_probs=87.1

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +.+++.|+.+       ..+.+||..+++-...-..............+++.+++++.+.        .+.+||..+++ 
T Consensus        21 ~~~l~~~~~~-------g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--------~i~i~~~~~~~-   84 (289)
T cd00200          21 GKLLATGSGD-------GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDK--------TIRLWDLETGE-   84 (289)
T ss_pred             CCEEEEeecC-------cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCC--------eEEEEEcCccc-
Confidence            3555555532       3577788776642111111111111111122344556655433        67888888754 


Q ss_pred             ccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeC-CeEEEEeC
Q 016552          227 NSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDE-EVLYGIDE  303 (387)
Q Consensus       227 ~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~-~~ly~~~~  303 (387)
                         -...-.......    ...... ++++++.++....+.+||+.+.+-. .+.. ..  .....+.... +.+++.+.
T Consensus        85 ---~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          85 ---CVRTLTGHTSYV----SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HT--DWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             ---ceEEEeccCCcE----EEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CC--CcEEEEEEcCcCCEEEEEc
Confidence               221111111000    112222 3466666654568999999855322 2211 11  1112333333 45555554


Q ss_pred             CCCeEEEEeCCCCceeEccccccccCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          304 NSCTLSRYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.+..||..+..-  +.........  .....-+++.+++++..+.+.+||....
T Consensus       155 ~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         155 QDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             CCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            478899999875422  1111121211  2222334546666666788999998853

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.17  E-value=0.061  Score=48.02  Aligned_cols=146  Identities=22%  Similarity=0.163  Sum_probs=90.0

Q ss_pred             eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      .++.+|.--|...      .+.+..||+.+++    =....++|..-|+   -..+.++++||.+.=....+.+||+.+-
T Consensus        54 ~~g~LyESTG~yG------~S~l~~~d~~tg~----~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   54 DDGTLYESTGLYG------QSSLRKVDLETGK----VLQSVPLPPRYFG---EGITILGDKLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             ETTEEEEEECSTT------EEEEEEEETTTSS----EEEEEE-TTT--E---EEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred             CCCEEEEeCCCCC------cEEEEEEECCCCc----EEEEEECCccccc---eeEEEECCEEEEEEecCCeEEEEccccc
Confidence            4678988776533      2578899999998    6666677766554   5577889999999877788999999863


Q ss_pred             ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc------cccCceEEEEeCCeEEEEecCC
Q 016552          274 TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD------LLKGARHAAAGGGRVCAVCENG  347 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~------~~~~~~~~~~~~g~i~v~gg~~  347 (387)
                        +.+.. .+....+=+++..+..|++-+| +..|+.+||++-  +.+....      +...---+-.++|.||.=--..
T Consensus       121 --~~~~~-~~y~~EGWGLt~dg~~Li~SDG-S~~L~~~dP~~f--~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~t  194 (264)
T PF05096_consen  121 --KKIGT-FPYPGEGWGLTSDGKRLIMSDG-SSRLYFLDPETF--KEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQT  194 (264)
T ss_dssp             --EEEEE-EE-SSS--EEEECSSCEEEE-S-SSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEETTEEEEEETTS
T ss_pred             --eEEEE-EecCCcceEEEcCCCEEEEECC-ccceEEECCccc--ceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCC
Confidence              33432 1111223466666777777766 678999999763  2222111      1222233445577777644456


Q ss_pred             CeEEEEeccCC
Q 016552          348 GGIVVVDVKAA  358 (387)
Q Consensus       348 ~~i~~~d~~~~  358 (387)
                      +.|+..|+.++
T Consensus       195 d~I~~Idp~tG  205 (264)
T PF05096_consen  195 DRIVRIDPETG  205 (264)
T ss_dssp             SEEEEEETTT-
T ss_pred             CeEEEEeCCCC
Confidence            77888888865

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.16  E-value=0.16  Score=55.24  Aligned_cols=200  Identities=12%  Similarity=0.050  Sum_probs=110.7

Q ss_pred             eEEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCC-------CCC-------Ccc-eeEEEe--CCEEEE
Q 016552          140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL-------VTP-------RRW-CAAGCS--RGAVYV  200 (387)
Q Consensus       140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~-------p~~-------r~~-~~~~~~--~~~iyv  200 (387)
                      +.++..  ++.|||.-..       ...+.++|+.++.-+.++.-       ...       -.. ...+..  ++.+||
T Consensus       627 ~GIavd~~gn~LYVaDt~-------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV  699 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTE-------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI  699 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCC-------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence            444443  4567886432       13577888877765554221       000       001 112222  678998


Q ss_pred             EecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC----------C-CCccccceEEEEECC-EEEEEeeeCCeEEEE
Q 016552          201 ASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK----------D-GRFSREAIDAVGWKG-KLCLVNVKGAEGAVY  268 (387)
Q Consensus       201 ~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p----------~-~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~y  268 (387)
                      ....+        +.+.+||..++.    ......-.          . ..+......++.-+| .||+.....+.+.+|
T Consensus       700 ad~~~--------~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~  767 (1057)
T PLN02919        700 AMAGQ--------HQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL  767 (1057)
T ss_pred             EECCC--------CeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence            75432        367888887765    43322100          0 000001111222344 599988777899999


Q ss_pred             ECCCCceeeccccc---c---------cC------CCCc-EEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccc---
Q 016552          269 DVVANTWDDMREGM---V---------RG------WRGP-VAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD---  325 (387)
Q Consensus       269 D~~~~~W~~~~~~~---~---------~~------~~~~-~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~---  325 (387)
                      |+.++.-..+...-   +         .+      ...+ ++++ .+|.||+.+..++.|.+||++++....+....   
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G  847 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG  847 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence            99876533221000   0         00      1112 2333 45689999888889999999988776654321   


Q ss_pred             ---------cccCceEE-EEeCCeEEEEecCCCeEEEEeccCC
Q 016552          326 ---------LLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       326 ---------~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                               ....+..+ +.-+|++||.-..++.|.++|+.+.
T Consensus       848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence                     01123333 3357889999788899999999865

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.12  E-value=0.2  Score=47.27  Aligned_cols=232  Identities=19%  Similarity=0.182  Sum_probs=119.2

Q ss_pred             CCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEE--eccCC
Q 016552           97 STPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIF--DPICR  174 (387)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vy--d~~t~  174 (387)
                      ...+..+.||..++++..+......       .+|+|      .....-++.||+.....    .....+..|  +..+.
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~~-------~~Ps~------l~~~~~~~~LY~~~e~~----~~~g~v~~~~i~~~~g   74 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAEG-------ENPSW------LAVSPDGRRLYVVNEGS----GDSGGVSSYRIDPDTG   74 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEES-------SSECC------EEE-TTSSEEEEEETTS----STTTEEEEEEEETTTT
T ss_pred             CCcEEEEEEcCCCCCceEeeeecCC-------CCCce------EEEEeCCCEEEEEEccc----cCCCCEEEEEECCCcc
Confidence            3567788889899988766543221       12222      12112345688875432    123345555  55556


Q ss_pred             ceeeCCCCCC-CCcceeEEE-e-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC---------CCCCCCcc
Q 016552          175 TWTFGPELVT-PRRWCAAGC-S-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG---------ELKDGRFS  242 (387)
Q Consensus       175 ~W~~l~~~p~-~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~---------~~p~~~~~  242 (387)
                      +.+.+...+. ...-+..+. - +..||++--.        ...+.+|+...+-.   -....         +-+.....
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~--------~g~v~v~~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~  143 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG--------GGSVSVFPLDDDGS---LGEVVQTVRHEGSGPNPDRQEG  143 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEEETT--------TTEEEEEEECTTSE---EEEEEEEEESEEEESSTTTTSS
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc--------CCeEEEEEccCCcc---cceeeeecccCCCCCccccccc
Confidence            7877766553 222222222 2 3456765321        23677777766420   22211         11111122


Q ss_pred             ccceEEEEE-CCE-EEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcE-EEE--eCCeEEEEeCCCCeEEEEeCC-
Q 016552          243 REAIDAVGW-KGK-LCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPV-AAM--DEEVLYGIDENSCTLSRYDEV-  314 (387)
Q Consensus       243 ~~~~~~~~~-~g~-lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~-~~~--~~~~ly~~~~~~~~l~~yd~~-  314 (387)
                      .+.|.+..- +|+ +|+..--.+.+.+|+...+.  ...........-.+|. +++  .+..+|++...++.|.+|+.. 
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            222444433 444 66554333789999887765  5443321111122332 333  245799998878887776665 


Q ss_pred             -CCceeEccccc---c-cc---CceEEEEe-CC-eEEEEecCCCeEEEEecc
Q 016552          315 -MDDWKEVVKSD---L-LK---GARHAAAG-GG-RVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       315 -~~~W~~v~~~~---~-~~---~~~~~~~~-~g-~i~v~gg~~~~i~~~d~~  356 (387)
                       +..++.+...+   . ..   .+..+... +| .||+...+.+.|.+|+++
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence             66777665332   2 11   22333333 34 477777778899999995

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.03  E-value=0.18  Score=50.40  Aligned_cols=276  Identities=16%  Similarity=0.144  Sum_probs=134.0

Q ss_pred             CCCCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCCce--eeEEeecCCCCCCCCCCeE------------
Q 016552           39 HQPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPF--LSLYALFSPKSNSSSTPIH------------  101 (387)
Q Consensus        39 ~~~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~~~--~~l~~~~~~~~~~~~~~~~------------  101 (387)
                      ....+..||-|+...||..|+   +..++.||+.|+.++.+......  ..+....-+   .......            
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ks  180 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPP---KCEKGLPLKSGFKGRPWKS  180 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCc---ccCcccccccccccchhhh
Confidence            356789999999999999999   99999999999999988655211  011111100   0000000            


Q ss_pred             EEE-EeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC
Q 016552          102 LFT-FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP  180 (387)
Q Consensus       102 ~~~-~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~  180 (387)
                      ++. .....+.|............. . ..+.       ..+....+. ++.-|.      ....+.+||..+..-...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-------~~~~q~~~~-~~~~~s------~~~tl~~~~~~~~~~i~~~  244 (537)
T KOG0274|consen  181 FYRRRFRLSKNWRKLFRRGYKVLLG-T-DDHV-------VLCLQLHDG-FFKSGS------DDSTLHLWDLNNGYLILTR  244 (537)
T ss_pred             hhhhhhhccccccccccccceeecc-c-Ccch-------hhhheeecC-eEEecC------CCceeEEeecccceEEEee
Confidence            000 011122343332221100000 0 0000       011111111 122221      1123457777776655431


Q ss_pred             -CCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEE
Q 016552          181 -ELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV  258 (387)
Q Consensus       181 -~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~  258 (387)
                       ........ +.+.. ++.+++.|-.+.        ++.++|..++.    -..+-...   .   ....+......+..
T Consensus       245 l~GH~g~V~-~l~~~~~~~~lvsgS~D~--------t~rvWd~~sg~----C~~~l~gh---~---stv~~~~~~~~~~~  305 (537)
T KOG0274|consen  245 LVGHFGGVW-GLAFPSGGDKLVSGSTDK--------TERVWDCSTGE----CTHSLQGH---T---SSVRCLTIDPFLLV  305 (537)
T ss_pred             ccCCCCCce-eEEEecCCCEEEEEecCC--------cEEeEecCCCc----EEEEecCC---C---ceEEEEEccCceEe
Confidence             12222211 11222 355666665443        66777877776    33322110   0   01112222333333


Q ss_pred             -eeeCCeEEEEECCCCceeecccccccCCCCcE-EEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe
Q 016552          259 -NVKGAEGAVYDVVANTWDDMREGMVRGWRGPV-AAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG  336 (387)
Q Consensus       259 -gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~-~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~  336 (387)
                       |..+..+.++|.+++.--.+-.+    ..++. .+..++.+.+.|..++.|.+||+.+.+-..  .+....+.......
T Consensus       306 sgs~D~tVkVW~v~n~~~l~l~~~----h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~--sl~gH~~~V~sl~~  379 (537)
T KOG0274|consen  306 SGSRDNTVKVWDVTNGACLNLLRG----HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK--SLSGHTGRVYSLIV  379 (537)
T ss_pred             eccCCceEEEEeccCcceEEEecc----ccccEEEEEecCCEEEEEecCceEEEEEhhhceeee--eecCCcceEEEEEe
Confidence             34557899999886655433221    11222 223345566666667899999998653332  23234444555566


Q ss_pred             CC-eEEEEecCCCeEEEEeccCC
Q 016552          337 GG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       337 ~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++ ..++-|+-...|-++|+.+.
T Consensus       380 ~~~~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  380 DSENRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             cCcceEEeeeeccceEeecCCch
Confidence            77 56665555667888888853

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.00  E-value=0.15  Score=45.08  Aligned_cols=172  Identities=13%  Similarity=0.093  Sum_probs=82.1

Q ss_pred             CccEEEeccCCceeeCCCCCCCC-cceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPR-RWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+.+||..+++-..  .+.... ........ ++++++.++.+.        .+.+||..+.+.   -..+......  
T Consensus        73 ~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~---~~~~~~~~~~--  137 (289)
T cd00200          73 KTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRDK--------TIKVWDVETGKC---LTTLRGHTDW--  137 (289)
T ss_pred             CeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCCC--------eEEEEECCCcEE---EEEeccCCCc--
Confidence            357888887753221  111111 11112222 346666665332        678899885551   2222211111  


Q ss_pred             cccceEEEEEC-CEEEEEeeeCCeEEEEECCCCce-eecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCce
Q 016552          242 SREAIDAVGWK-GKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDW  318 (387)
Q Consensus       242 ~~~~~~~~~~~-g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W  318 (387)
                         ........ +.+++.+..+..+.+||..+.+- ..... .  .....++... ++..+++++.++.+..||..+..-
T Consensus       138 ---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-H--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             ---EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec-C--ccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence               01122222 45544444356899999875432 11111 1  1111223332 333455555578899999977433


Q ss_pred             eEcccccccc-CceEEEEe-CCeEEEEecCCCeEEEEeccCC
Q 016552          319 KEVVKSDLLK-GARHAAAG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~-~~~~~~~~-~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..  ...... ....+... ++.+++.++..+.+.+||..+.
T Consensus       212 ~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         212 LG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             ec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            32  221111 12223333 3556666555788999998843

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.97  E-value=0.31  Score=48.49  Aligned_cols=204  Identities=14%  Similarity=0.189  Sum_probs=109.4

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCCc-----ceeEEEeC-CEEEEEecCCCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRR-----WCAAGCSR-GAVYVASGIGSQFSSDV  212 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r~-----~~~~~~~~-~~iyv~GG~~~~~~~~~  212 (387)
                      ..++.++.+|+....        ..++.+|+.|.  .|+.-...+..+.     ....+..+ ++||+...         
T Consensus        56 sPvv~~g~vy~~~~~--------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~---------  118 (488)
T cd00216          56 TPLVVDGDMYFTTSH--------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF---------  118 (488)
T ss_pred             CCEEECCEEEEeCCC--------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------
Confidence            456678888886431        35788898876  5876332221111     11223446 78887532         


Q ss_pred             cceEEEEECCCCccccCeEEcCCCCC-CCccccceEEEEECCEEEEEee--------eCCeEEEEECCCC--ceeeccc-
Q 016552          213 AKSVEKWDLMNGEKNSRWEKTGELKD-GRFSREAIDAVGWKGKLCLVNV--------KGAEGAVYDVVAN--TWDDMRE-  280 (387)
Q Consensus       213 ~~~v~~yd~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg--------~~~~i~~yD~~~~--~W~~~~~-  280 (387)
                      ...+.++|..+++..  |+.-..-+. ..+. -....++.++.+|+-..        ....+.++|.+++  .|+.-.. 
T Consensus       119 ~g~v~AlD~~TG~~~--W~~~~~~~~~~~~~-i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~  195 (488)
T cd00216         119 DGRLVALDAETGKQV--WKFGNNDQVPPGYT-MTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE  195 (488)
T ss_pred             CCeEEEEECCCCCEe--eeecCCCCcCcceE-ecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence            136788999988866  886543221 0010 01223556777776432        1246899999877  5864321 


Q ss_pred             cc---cc---------------CCCCcEEEEeCCeEEEEeCCC-----------------CeEEEEeCCCC--ceeEccc
Q 016552          281 GM---VR---------------GWRGPVAAMDEEVLYGIDENS-----------------CTLSRYDEVMD--DWKEVVK  323 (387)
Q Consensus       281 ~~---~~---------------~~~~~~~~~~~~~ly~~~~~~-----------------~~l~~yd~~~~--~W~~v~~  323 (387)
                      ..   ..               .|..+++...++.+|+-.++.                 +.++++|.+++  .|+.-..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~  275 (488)
T cd00216         196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT  275 (488)
T ss_pred             CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence            00   00               011112222356777764321                 37999999886  5775322


Q ss_pred             cccc---cC--ceEEE---EeCCe---EEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          324 SDLL---KG--ARHAA---AGGGR---VCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       324 ~~~~---~~--~~~~~---~~~g~---i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      .+..   ..  ...+.   .+++.   +++++..+..++.+|..+.  ...|+.
T Consensus       276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--~~~W~~  327 (488)
T cd00216         276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--KLISAR  327 (488)
T ss_pred             CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC--cEeeEe
Confidence            2111   11  11122   13343   5556566777999999854  346875

The alignment model contains an 8-bladed beta-propeller.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.94  E-value=0.21  Score=44.48  Aligned_cols=180  Identities=17%  Similarity=0.084  Sum_probs=103.9

Q ss_pred             ccEEEeccCCceeeCCCCCCCC--cceeEEEeC--CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPR--RWCAAGCSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r--~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      .+.++|++|..-++.+ +|..+  .+.-.++++  |+++..|-.+..  +       .+|+.++.    -+..+ .|.+.
T Consensus       125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~y--G-------rLdPa~~~----i~vfp-aPqG~  189 (353)
T COG4257         125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGAY--G-------RLDPARNV----ISVFP-APQGG  189 (353)
T ss_pred             eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeeccccc--e-------ecCcccCc----eeeec-cCCCC
Confidence            5788999998877753 33322  344445554  578877653221  1       23444443    22221 12211


Q ss_pred             ccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccccc--ccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce
Q 016552          241 FSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDW  318 (387)
Q Consensus       241 ~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W  318 (387)
                      .  ....++.-||.+|+..-.++.+-..|+.+..=+.++..-  ..+.+...+-- -|++.+.....+.+++||+....|
T Consensus       190 g--pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW  266 (353)
T COG4257         190 G--PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSW  266 (353)
T ss_pred             C--CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccc
Confidence            1  113355679999998777778888999888544554311  11211111111 357888766678999999999999


Q ss_pred             eEccccccccCceEE-EEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          319 KEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      .+-..+-.......+ |--.|++.+---+.+-|.-||+.+.    .+.+
T Consensus       267 ~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta----~ftv  311 (353)
T COG4257         267 IEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA----RFTV  311 (353)
T ss_pred             eeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc----eEEE
Confidence            986543322223322 2234677775445567788888876    6665

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.90  E-value=0.35  Score=45.22  Aligned_cols=178  Identities=12%  Similarity=0.002  Sum_probs=89.0

Q ss_pred             CccEEEeccC-CceeeCCCCCCCCc-ceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECC-CCccccCeEEcCCCCCC
Q 016552          164 TRPLIFDPIC-RTWTFGPELVTPRR-WCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vyd~~t-~~W~~l~~~p~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~~~~~W~~~~~~p~~  239 (387)
                      ..+.+||..+ ++++.+...+.... ...+..-++ .||+.+...        ..+.+|+.. +++    +..+...+.+
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~----l~~~~~~~~~   79 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGA----LTFAAESPLP   79 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCc----eEEeeeecCC
Confidence            4678888764 46665544432221 111222234 567754321        356677775 445    6655433322


Q ss_pred             CccccceEEEEECCE-EEEEeeeCCeEEEEECCCCc-e-eecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC
Q 016552          240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANT-W-DDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEV  314 (387)
Q Consensus       240 ~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~-W-~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~  314 (387)
                      ...  .+.+..-+|+ +|+.+...+.+.+||..++. - ..+.. .+.....+.+++.  ++.+|+.+...+.|.+||.+
T Consensus        80 ~~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         80 GSP--THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             CCc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence            111  1222223454 66665445788999886431 1 11211 1111112333333  45677777667899999997


Q ss_pred             CCc-eeEcc----ccccccCceEEE-EeCC-eEEEEecCCCeEEEEecc
Q 016552          315 MDD-WKEVV----KSDLLKGARHAA-AGGG-RVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       315 ~~~-W~~v~----~~~~~~~~~~~~-~~~g-~i~v~gg~~~~i~~~d~~  356 (387)
                      ++. -....    ..+.-.++..++ .-+| .+|+.....+.+.+||++
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            632 21110    111112222233 2333 577776668899999987

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.86  E-value=0.11  Score=47.28  Aligned_cols=114  Identities=22%  Similarity=0.343  Sum_probs=70.0

Q ss_pred             EEEEecCCCCCCCC-CcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeC------CeEEEEE
Q 016552          198 VYVASGIGSQFSSD-VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG------AEGAVYD  269 (387)
Q Consensus       198 iyv~GG~~~~~~~~-~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~------~~i~~yD  269 (387)
                      |||.|-...  .+. .+..+..||..+.+    |.....--.+.    -...... +++||+.|...      ..+..||
T Consensus         1 v~VGG~F~~--aGsL~C~~lC~yd~~~~q----W~~~g~~i~G~----V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd   70 (281)
T PF12768_consen    1 VYVGGSFTS--AGSLPCPGLCLYDTDNSQ----WSSPGNGISGT----VTDLQWASNNQLLVGGNFTLNGTNSSNLATYD   70 (281)
T ss_pred             CEEeeecCC--CCCcCCCEEEEEECCCCE----eecCCCCceEE----EEEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence            355555544  222 46789999999999    99887432121    1223333 67788776532      5688999


Q ss_pred             CCCCceeecccccccCCCCcEEE--E---eCCeEEEEeC-CCC--eEEEEeCCCCceeEccc
Q 016552          270 VVANTWDDMREGMVRGWRGPVAA--M---DEEVLYGIDE-NSC--TLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       270 ~~~~~W~~~~~~~~~~~~~~~~~--~---~~~~ly~~~~-~~~--~l~~yd~~~~~W~~v~~  323 (387)
                      .++.+|+.+.........++..+  +   ....+++-|. ..+  .|..|  +..+|..+..
T Consensus        71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence            99999998876332233334222  2   2335666554 223  35666  5778999876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0014  Score=58.72  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             CCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCC
Q 016552           41 PLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        41 ~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~   80 (387)
                      ..|-.|||||++.|++.||   |.++..|||||+++.++.+..
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW  138 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW  138 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence            3488999999999999999   999999999999999998763

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.72  E-value=0.031  Score=49.87  Aligned_cols=103  Identities=13%  Similarity=0.055  Sum_probs=71.7

Q ss_pred             ECCEEEEEeee-C-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552          251 WKGKLCLVNVK-G-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       251 ~~g~lyv~gg~-~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~  328 (387)
                      .+|.+|.-.|. + ..+..||+++++=..... ++....+-++++.+++||.+.-.++..++||.++  .+.+...+-..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~  130 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG  130 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSSSEEEEEETTT--TEEEEEEE-SS
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCccccceeEEEECCEEEEEEecCCeEEEEcccc--ceEEEEEecCC
Confidence            57899977653 3 789999999987544333 5555567788899999999998889999999975  56666655444


Q ss_pred             CceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          329 GARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ..-+++ .+|+-++++.+...++++|+.+
T Consensus       131 EGWGLt-~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  131 EGWGLT-SDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             S--EEE-ECSSCEEEE-SSSEEEEE-TTT
T ss_pred             cceEEE-cCCCEEEEECCccceEEECCcc
Confidence            566666 5566666667788899999884

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.69  E-value=0.065  Score=50.88  Aligned_cols=174  Identities=9%  Similarity=0.018  Sum_probs=89.2

Q ss_pred             ccEEEeccCCceee-CCCCCCCCc-ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTF-GPELVTPRR-WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~-l~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .+-+|+..+..-.+ +..+  .+. +.+....+|++..+|+...        .+.+||..+...   -+.+-.-.   ++
T Consensus        49 rvqly~~~~~~~~k~~srF--k~~v~s~~fR~DG~LlaaGD~sG--------~V~vfD~k~r~i---LR~~~ah~---ap  112 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSRF--KDVVYSVDFRSDGRLLAAGDESG--------HVKVFDMKSRVI---LRQLYAHQ---AP  112 (487)
T ss_pred             EEEEEecchhhhhhhHHhh--ccceeEEEeecCCeEEEccCCcC--------cEEEeccccHHH---HHHHhhcc---Cc
Confidence            45666665544332 1111  111 2233345799999988755        778899444220   11111000   11


Q ss_pred             ccceEEEEECCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceeE
Q 016552          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD-DWKE  320 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~-~W~~  320 (387)
                      -+.......++.+++.++.+..+..+|..+..=. ++.. ..+-.+.....-.++.|++-|+.+|.|..||+.+. .|..
T Consensus       113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~  191 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV  191 (487)
T ss_pred             eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence            0001123468888888887766666777766521 1111 11111122222345678999988999999999887 4443


Q ss_pred             ccccccccC-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          321 VVKSDLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       321 v~~~~~~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                        .+..-.. --.+..-.|.+++. .+|+.+-|||..++
T Consensus       192 --elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G  227 (487)
T KOG0310|consen  192 --ELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLTTG  227 (487)
T ss_pred             --EecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEecCC
Confidence              2222111 12122233344444 45566777777743

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.67  E-value=0.43  Score=42.59  Aligned_cols=174  Identities=11%  Similarity=0.083  Sum_probs=97.9

Q ss_pred             EEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceE
Q 016552          168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAID  247 (387)
Q Consensus       168 vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~  247 (387)
                      .+||.++.-+..+.....-.+-.++.-+|.+|+..=.+        +.+-..|+.+..    =++++ .|.+.....--.
T Consensus       172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag--------naiaridp~~~~----aev~p-~P~~~~~gsRri  238 (353)
T COG4257         172 RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG--------NAIARIDPFAGH----AEVVP-QPNALKAGSRRI  238 (353)
T ss_pred             ecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc--------cceEEcccccCC----cceec-CCCccccccccc
Confidence            56777766555443333333445666788998873221        234445665554    22332 222210000001


Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcccccc
Q 016552          248 AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL  326 (387)
Q Consensus       248 ~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~  326 (387)
                      .+---|++.+..--...+..|||...+|.+-+- +...-+..++-+ ..+++++-+-..+.|..||+++.+.+.+....+
T Consensus       239 wsdpig~~wittwg~g~l~rfdPs~~sW~eypL-Pgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         239 WSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL-PGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             ccCccCcEEEeccCCceeeEeCcccccceeeeC-CCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence            111235666553333578999999999998763 122222233333 245777766667889999999999888776555


Q ss_pred             ccCceEEEEeCCeEEEEecCCCeEEEEec
Q 016552          327 LKGARHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       327 ~~~~~~~~~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      ..+...+....|++...-.+-..++++.+
T Consensus       318 n~gn~ql~gr~ge~W~~e~gvd~lv~~r~  346 (353)
T COG4257         318 NSGNIQLDGRPGELWFTEAGVDALVTTRI  346 (353)
T ss_pred             CCCceeccCCCCceeecccCcceeEEEEe
Confidence            55566666666777776444455555543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.61  E-value=0.57  Score=43.13  Aligned_cols=239  Identities=16%  Similarity=0.205  Sum_probs=121.6

Q ss_pred             eeEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCC--CCcccccccCCCccccccceEEEEECCEEEEEecccCCCC
Q 016552           83 LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPP--DPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFN  160 (387)
Q Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  160 (387)
                      +.||+...+   ...+.+..|.+|+..++...+...+.  .|+               .+.++.-++..++.+-+..   
T Consensus        52 ~~LY~v~~~---~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p---------------~yvsvd~~g~~vf~AnY~~---  110 (346)
T COG2706          52 RHLYVVNEP---GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP---------------CYVSVDEDGRFVFVANYHS---  110 (346)
T ss_pred             CEEEEEEec---CCcCcEEEEEEcCCCCeEEEeeccccCCCCC---------------eEEEECCCCCEEEEEEccC---
Confidence            468887764   34566677888888777766553322  211               1333444444444443332   


Q ss_pred             CCCCccEEEeccCC-c-e------eeCCCCCCCC-----cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccc
Q 016552          161 PALTRPLIFDPICR-T-W------TFGPELVTPR-----RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN  227 (387)
Q Consensus       161 ~~~~~~~vyd~~t~-~-W------~~l~~~p~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~  227 (387)
                         ..+.+|-..++ . |      ....+-|.+|     .+++-..-++++.+.--.       -.+.+.+|+...+.  
T Consensus       111 ---g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-------G~Dri~~y~~~dg~--  178 (346)
T COG2706         111 ---GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-------GTDRIFLYDLDDGK--  178 (346)
T ss_pred             ---ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-------CCceEEEEEcccCc--
Confidence               23455544332 1 1      1122223445     222222334544333211       23578889888776  


Q ss_pred             cCeEEcCC--CCCCCccccceEEEEECCE-EEEEeeeCC--eEEEEECCCCceeeccc--ccccCCCCc--EEE----Ee
Q 016552          228 SRWEKTGE--LKDGRFSREAIDAVGWKGK-LCLVNVKGA--EGAVYDVVANTWDDMRE--GMVRGWRGP--VAA----MD  294 (387)
Q Consensus       228 ~~W~~~~~--~p~~~~~~~~~~~~~~~g~-lyv~gg~~~--~i~~yD~~~~~W~~~~~--~~~~~~~~~--~~~----~~  294 (387)
                        -.....  ++.+ ..+. |...--+++ .|++..-.+  .++.||...++.++++.  .+|..+.+.  +++    -.
T Consensus       179 --L~~~~~~~v~~G-~GPR-Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         179 --LTPADPAEVKPG-AGPR-HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             --cccccccccCCC-CCcc-eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence              444332  2221 1111 434444565 578776553  45567777788887763  255555421  222    23


Q ss_pred             CCeEEEEeCCCCeEEEE--eCCCCceeEccccc---cccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          295 EEVLYGIDENSCTLSRY--DEVMDDWKEVVKSD---LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~y--d~~~~~W~~v~~~~---~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      |..||+.......|.+|  |+.++.-.-+..-+   ...+.+.+..-++-|++.+-.++.+.+|.++..
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            55677765434456665  55555443333221   223345555555666666667788888888743

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.59  E-value=0.65  Score=43.76  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=38.6

Q ss_pred             eCCeEEEEe-C--------CCCeEEEEeCCCCceeEccccccccCceEE-EEeCCe--EEEEecCCCeEEEEeccCC
Q 016552          294 DEEVLYGID-E--------NSCTLSRYDEVMDDWKEVVKSDLLKGARHA-AAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~-~--------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~g~--i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++++|+.. +        ..+.++++|.++.  +.+...+--.....+ +.-+++  +|+..+..+.+.++|..+.
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECCCC--eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            367899943 2        1257999998665  455444333333333 344555  5555556788999999865

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.58  E-value=0.047  Score=51.54  Aligned_cols=114  Identities=9%  Similarity=0.052  Sum_probs=73.7

Q ss_pred             CCE-EEEEeeeCCeEEEEECCCCceeecccccccC--CCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552          252 KGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRG--WRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~--~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~  328 (387)
                      +|. ..+.+|....+++||+++.+-.++.......  ....-.+..++...++.|..|.|......+++|..--.++...
T Consensus       268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v  347 (514)
T KOG2055|consen  268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVV  347 (514)
T ss_pred             CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEE
Confidence            555 6666776678999999999888776422111  1112233345567777778899999999999987655555544


Q ss_pred             CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      ..++.. .+++.+++.++.+.|+++|+.+..--..|+.
T Consensus       348 ~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D  384 (514)
T KOG2055|consen  348 SDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVD  384 (514)
T ss_pred             eeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence            444333 4556555555555899999997622234553

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.53  E-value=0.12  Score=48.89  Aligned_cols=189  Identities=11%  Similarity=0.013  Sum_probs=104.3

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc--ceeEEEeCCE-EEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR--WCAAGCSRGA-VYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~--~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      .|++.+|.++     .-.+|..|=.+|.  .+.++...+.  ..+.-..+|. ..+++|...        ...+||.++.
T Consensus       226 plllvaG~d~-----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk--------y~ysyDle~a  290 (514)
T KOG2055|consen  226 PLLLVAGLDG-----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK--------YLYSYDLETA  290 (514)
T ss_pred             ceEEEecCCC-----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce--------EEEEeecccc
Confidence            5788888654     2345666777776  4444443221  1111122444 666665533        6788999999


Q ss_pred             ccccCeEEcCCCCCCCcccc-ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC
Q 016552          225 EKNSRWEKTGELKDGRFSRE-AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~-~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~  303 (387)
                      +    -.++.++-. +.... ....+..++.+.++.|....|......|+.|-.--. +. +.-.......+++..++.+
T Consensus       291 k----~~k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ie-G~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  291 K----VTKLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IE-GVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             c----cccccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ec-cEEeeEEEecCCcEEEEEc
Confidence            8    777764421 11000 012445566777777766678888888888843211 11 1000111123444444444


Q ss_pred             CCCeEEEEeCCCCceeEcccc-ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          304 NSCTLSRYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..|.|++||..++.-...-.. ....+...|...++..+.+|...+-+-+||-...
T Consensus       364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            578999999998843322222 2234455566678887777666666778875543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.52  E-value=1  Score=49.15  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=66.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccc---------c--cCCCCc-EEEEe--CCeEEEEeCCCCeEEEEeCCCCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGM---------V--RGWRGP-VAAMD--EEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~---------~--~~~~~~-~~~~~--~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      ++.+|+.....+.+.+||+.++.........         .  .....+ .+++.  ++.||+.+..++.|.+||++++.
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            6789988766678999999887655432100         0  001111 23332  44699998888899999998765


Q ss_pred             eeEccc-cc-------------------cccCceE-EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          318 WKEVVK-SD-------------------LLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~-~~-------------------~~~~~~~-~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      -..+.. .+                   ....+.. ++.-+|.|||.-..++.|.++|+.+.
T Consensus       774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            332210 00                   0112223 33456789999888899999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.50  E-value=0.16  Score=46.72  Aligned_cols=143  Identities=15%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-CCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-GELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      ++.+.+.||.++        ...+++..++.    |-.. +.-... ..   +.+...+|.+...|+....+.+++..++
T Consensus        75 ~~~l~aTGGgDD--------~AflW~~~~ge----~~~eltgHKDS-Vt---~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   75 NNNLVATGGGDD--------LAFLWDISTGE----FAGELTGHKDS-VT---CCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             CCceEEecCCCc--------eEEEEEccCCc----ceeEecCCCCc-eE---EEEEccCceEEEecCCCccEEEEEcccC
Confidence            567788888765        66788888888    6532 211111 11   3455668887777776678888888766


Q ss_pred             --ceeecccccccCCC--CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCe
Q 016552          274 --TWDDMREGMVRGWR--GPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGG  349 (387)
Q Consensus       274 --~W~~~~~~~~~~~~--~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~  349 (387)
                        +|......-...|-  .+     .+.+++.|..+|.+|+|......-.++-.-+..+...+.+.-+||-.+.|-....
T Consensus       139 ~~~~~~~~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ceEEEeecccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence              67654221111111  11     2457777778899999998776333332222233345555667888888778888


Q ss_pred             EEEEeccCC
Q 016552          350 IVVVDVKAA  358 (387)
Q Consensus       350 i~~~d~~~~  358 (387)
                      |.+||+.++
T Consensus       214 i~~Wn~ktg  222 (399)
T KOG0296|consen  214 IIVWNPKTG  222 (399)
T ss_pred             EEEEecCCC
Confidence            999999976

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.32  E-value=1.4  Score=44.26  Aligned_cols=196  Identities=17%  Similarity=0.269  Sum_probs=109.8

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCC--------cceeEEEeCCEEEEEecCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR--------RWCAAGCSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      ..++.++.||+....        ..++.+|..|.  .|+.-...+...        .....++.+++||+... +     
T Consensus        64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----  129 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----  129 (527)
T ss_pred             CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----
Confidence            345678888886431        25788898876  587643322111        11224566788887421 1     


Q ss_pred             CCcceEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECCEEEEEeee-----CCeEEEEECCCC--ceee--ccc
Q 016552          211 DVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDD--MRE  280 (387)
Q Consensus       211 ~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~--~~~  280 (387)
                         ..+.++|..|++..  |+.-. ..... +. ....-++.+++||+-...     ...+.+||.+++  .|+.  ++.
T Consensus       130 ---g~l~ALDa~TGk~~--W~~~~~~~~~~-~~-~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~  202 (527)
T TIGR03075       130 ---ARLVALDAKTGKVV--WSKKNGDYKAG-YT-ITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG  202 (527)
T ss_pred             ---CEEEEEECCCCCEE--eeccccccccc-cc-ccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence               26789999999866  87543 11111 11 112345678998875321     257899999988  4763  322


Q ss_pred             ccc------------c---CCC------Cc-----EEEEe--CCeEEEEeCC---------------CCeEEEEeCCCCc
Q 016552          281 GMV------------R---GWR------GP-----VAAMD--EEVLYGIDEN---------------SCTLSRYDEVMDD  317 (387)
Q Consensus       281 ~~~------------~---~~~------~~-----~~~~~--~~~ly~~~~~---------------~~~l~~yd~~~~~  317 (387)
                      ...            .   .|.      +.     ..++.  .+.||+-.++               +..|.+.|.+|++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~  282 (527)
T TIGR03075       203 DMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK  282 (527)
T ss_pred             CcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC
Confidence            100            0   010      00     11222  3456664432               1268999999874


Q ss_pred             --eeEcccccc------ccCceEEEE--eCCe---EEEEecCCCeEEEEeccCC
Q 016552          318 --WKEVVKSDL------LKGARHAAA--GGGR---VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 --W~~v~~~~~------~~~~~~~~~--~~g~---i~v~gg~~~~i~~~d~~~~  358 (387)
                        |.--. .+.      ......++-  .+|+   +++.+...+.++++|..++
T Consensus       283 ~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       283 IKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             EEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence              65322 221      112233443  4665   7878788888999999865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PTZ00420 coronin; Provisional

Probab=96.25  E-value=1.4  Score=44.48  Aligned_cols=142  Identities=13%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCcee
Q 016552          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD  276 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~  276 (387)
                      .+++.||.+.        .+.+||..+.+..  . .+. .+.. .   ...+...+|.+.+.++.+..+.+||+.+++=.
T Consensus       139 ~iLaSgS~Dg--------tIrIWDl~tg~~~--~-~i~-~~~~-V---~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        139 YIMCSSGFDS--------FVNIWDIENEKRA--F-QIN-MPKK-L---SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             eEEEEEeCCC--------eEEEEECCCCcEE--E-EEe-cCCc-E---EEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            4555666544        7788999877621  1 121 1111 1   01122347887777766678999999876421


Q ss_pred             -ecccccccCCCCcEEE-E----eCCeEEEEeCCC----CeEEEEeCCC-CceeEccccccccCceEE-E---EeCCeEE
Q 016552          277 -DMREGMVRGWRGPVAA-M----DEEVLYGIDENS----CTLSRYDEVM-DDWKEVVKSDLLKGARHA-A---AGGGRVC  341 (387)
Q Consensus       277 -~~~~~~~~~~~~~~~~-~----~~~~ly~~~~~~----~~l~~yd~~~-~~W~~v~~~~~~~~~~~~-~---~~~g~i~  341 (387)
                       ++..  ..+.....++ .    .++..++.++.+    ..+..||... ..-.......  .....+ -   .-.|.+|
T Consensus       203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--NASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--CCccceEEeeeCCCCCEE
Confidence             1111  0110001111 1    233333333322    3699999874 2211111111  111111 1   2247788


Q ss_pred             EEecCCCeEEEEeccCC
Q 016552          342 AVCENGGGIVVVDVKAA  358 (387)
Q Consensus       342 v~gg~~~~i~~~d~~~~  358 (387)
                      +.|.+...|.+||+...
T Consensus       279 lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEECCCeEEEEEccCC
Confidence            88878888999998743

>PTZ00421 coronin; Provisional

Probab=96.24  E-value=1.4  Score=43.67  Aligned_cols=144  Identities=12%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      +.+++.||.+.        .+.+||..+++    -. .+.......    .......+|.+.+.++.+..+.+||+.+++
T Consensus       138 ~~iLaSgs~Dg--------tVrIWDl~tg~----~~~~l~~h~~~V----~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        138 MNVLASAGADM--------VVNVWDVERGK----AVEVIKCHSDQI----TSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             CCEEEEEeCCC--------EEEEEECCCCe----EEEEEcCCCCce----EEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            35777777654        78899998776    22 222111110    011223367777777777889999998764


Q ss_pred             e-eecccccccCCCCcEEE-E-eCCeEEEEeC---CCCeEEEEeCCCCceeEccccc-cccCceEE--EEeCCeEEEEec
Q 016552          275 W-DDMREGMVRGWRGPVAA-M-DEEVLYGIDE---NSCTLSRYDEVMDDWKEVVKSD-LLKGARHA--AAGGGRVCAVCE  345 (387)
Q Consensus       275 W-~~~~~~~~~~~~~~~~~-~-~~~~ly~~~~---~~~~l~~yd~~~~~W~~v~~~~-~~~~~~~~--~~~~g~i~v~gg  345 (387)
                      = ..+..  ..+.....++ . .++.++..+.   .++.+..||..+..-. +.... .......+  ...++.++++||
T Consensus       202 ~v~tl~~--H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        202 IVSSVEA--HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             EEEEEec--CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence            2 12211  1110011122 1 2344544442   2467999998653211 11100 11111212  223566666666


Q ss_pred             -CCCeEEEEeccCC
Q 016552          346 -NGGGIVVVDVKAA  358 (387)
Q Consensus       346 -~~~~i~~~d~~~~  358 (387)
                       +...|.+||+.+.
T Consensus       279 kgDg~Iriwdl~~~  292 (493)
T PTZ00421        279 KGEGNIRCFELMNE  292 (493)
T ss_pred             eCCCeEEEEEeeCC
Confidence             4677889998865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.23  E-value=1  Score=42.01  Aligned_cols=181  Identities=15%  Similarity=0.066  Sum_probs=86.5

Q ss_pred             CccEEEecc-CCceeeCCCCCCCCc-ceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          164 TRPLIFDPI-CRTWTFGPELVTPRR-WCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vyd~~-t~~W~~l~~~p~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      ..+.+|+.. ++++..+...+.+.. .+.+..-++ .+|+..-.        .+.+.+||..++...  ...+...+...
T Consensus        57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~--------~~~v~v~~~~~~g~~--~~~~~~~~~~~  126 (330)
T PRK11028         57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN--------ANCVSVSPLDKDGIP--VAPIQIIEGLE  126 (330)
T ss_pred             CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC--------CCeEEEEEECCCCCC--CCceeeccCCC
Confidence            456777765 456655443332211 222222244 56776422        136778887644210  11122111111


Q ss_pred             ccccceEEE-EECC-EEEEEeeeCCeEEEEECCCC-ceeeccc---ccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEe
Q 016552          241 FSREAIDAV-GWKG-KLCLVNVKGAEGAVYDVVAN-TWDDMRE---GMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYD  312 (387)
Q Consensus       241 ~~~~~~~~~-~~~g-~lyv~gg~~~~i~~yD~~~~-~W~~~~~---~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd  312 (387)
                      .   .+.++ .-+| .+|+.+...+.+.+||..++ .......   ..+.+.....+++  .+..+|+....++.+.+||
T Consensus       127 ~---~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~  203 (330)
T PRK11028        127 G---CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ  203 (330)
T ss_pred             c---ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence            1   12222 2244 46666555578999999763 2221100   0111211122333  2447888876678898888


Q ss_pred             CC--CCceeEccc---ccc----ccCceEEE-EeCCe-EEEEecCCCeEEEEeccC
Q 016552          313 EV--MDDWKEVVK---SDL----LKGARHAA-AGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       313 ~~--~~~W~~v~~---~~~----~~~~~~~~-~~~g~-i~v~gg~~~~i~~~d~~~  357 (387)
                      .+  +++.+.+..   .|.    .+....+. .-+|+ +|+.....+.|.+||+++
T Consensus       204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            76  445544432   221    11111122 23454 666545567889998864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.23  E-value=0.7  Score=44.12  Aligned_cols=189  Identities=11%  Similarity=0.037  Sum_probs=96.5

Q ss_pred             EEEECCEEEEEecccCCCCCCCCccEEEeccCCc-eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRT-WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~-W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      ....+|+|+++|+..+       .+-+||..++. -+.+.....|-..--....++.+++.|+-+.        .+..+|
T Consensus        75 ~fR~DG~LlaaGD~sG-------~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~--------v~k~~d  139 (487)
T KOG0310|consen   75 DFRSDGRLLAAGDESG-------HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK--------VVKYWD  139 (487)
T ss_pred             EeecCCeEEEccCCcC-------cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc--------eEEEEE
Confidence            3446799999988543       57899944421 1222222222222223345778888876433        333444


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEE-EeCCeE
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAA-MDEEVL  298 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~-~~~~~l  298 (387)
                      ..+..     ..+.-....-+.|. ....-.++.+.+.|+++..+-.||..+. .|.  -. +..+.+.-.++ .-+|.+
T Consensus       140 ~s~a~-----v~~~l~~htDYVR~-g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v--~e-lnhg~pVe~vl~lpsgs~  210 (487)
T KOG0310|consen  140 LSTAY-----VQAELSGHTDYVRC-GDISPANDHIVVTGSYDGKVRLWDTRSLTSRV--VE-LNHGCPVESVLALPSGSL  210 (487)
T ss_pred             cCCcE-----EEEEecCCcceeEe-eccccCCCeEEEecCCCceEEEEEeccCCcee--EE-ecCCCceeeEEEcCCCCE
Confidence            44433     11110011112221 2233346778999999999999999887 443  11 22222222333 334456


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccc-cccCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSD-LLKGARHAAAG-GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~-~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~  356 (387)
                      ++..+ +..+.+||+.++. +.+..+. ....-.++... ++.=++-|+-...+-+||+.
T Consensus       211 iasAg-Gn~vkVWDl~~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  211 IASAG-GNSVKVWDLTTGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             EEEcC-CCeEEEEEecCCc-eehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            55543 4578999987542 2222322 23322333332 33444454556778888866

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.17  E-value=0.75  Score=48.76  Aligned_cols=169  Identities=12%  Similarity=0.032  Sum_probs=90.8

Q ss_pred             ccEEEeccCCceeeCCCCCCC-CcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          165 RPLIFDPICRTWTFGPELVTP-RRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      .+.+||..+++-..  .+... ....+.+.  .++.+++.||.+.        .+.+||..+...   ...+.. ...  
T Consensus       556 ~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~~~~---~~~~~~-~~~--  619 (793)
T PLN00181        556 VVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQGVS---IGTIKT-KAN--  619 (793)
T ss_pred             eEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCCCcE---EEEEec-CCC--
Confidence            57788887654322  22111 11222222  2467777777654        788899876651   222221 100  


Q ss_pred             cccceEEEE---ECCEEEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          242 SREAIDAVG---WKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       242 ~~~~~~~~~---~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                          ..++.   -+|.+++.|+.+..+.+||..+..  ...+..   ..-....+...++..++.++.++.|..||....
T Consensus       620 ----v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        620 ----ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             ----eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence                11222   246777777777889999987642  211111   000112333445566666667789999998643


Q ss_pred             ----ceeEccccccccC--ceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552          317 ----DWKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       317 ----~W~~v~~~~~~~~--~~~~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                          .|..+........  .......++.+++.|+..+.+.+||..
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence                2333332222111  222334467777777778889999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=96.15  E-value=0.59  Score=41.66  Aligned_cols=177  Identities=11%  Similarity=0.127  Sum_probs=100.0

Q ss_pred             ccEEEeccCCceeeCCCCCCCC--cce---eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPR--RWC---AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r--~~~---~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~  239 (387)
                      .+.+++...+.|....+...-.  .++   .+...++...+.++.+.        .+..+|.++++.+   .........
T Consensus        39 ~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~--------~lrlWDl~~g~~t---~~f~GH~~d  107 (315)
T KOG0279|consen   39 TIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG--------TLRLWDLATGEST---RRFVGHTKD  107 (315)
T ss_pred             EEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc--------eEEEEEecCCcEE---EEEEecCCc
Confidence            4566777777666543322111  111   22334667777776654        6677888886611   111100000


Q ss_pred             CccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeC--CeEEEEeCCCCeEEEEeCCCCc
Q 016552          240 RFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE--EVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       240 ~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~--~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      .    ...++.-|++-.+-|..++.+..||...+.=-++...+...|-.+....-+  +-+++-++.++.+.+||..+-+
T Consensus       108 V----lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  108 V----LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             e----EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence            0    022334467777777777888888877765555544333333222212222  3344444567889999997763


Q ss_pred             eeEccccccccC--ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          318 WKEVVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~~~~~~~--~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      -..  ..+...+  ..+.+..+|.++.-||.+..++++|.+.+
T Consensus       184 l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~  224 (315)
T KOG0279|consen  184 LRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG  224 (315)
T ss_pred             hhh--ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence            222  1222222  46667789999999999999999999965

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.11  E-value=0.41  Score=44.71  Aligned_cols=137  Identities=12%  Similarity=0.071  Sum_probs=82.9

Q ss_pred             ceEEEEECCCCc-cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc-eeecccccccCCCCcEE
Q 016552          214 KSVEKWDLMNGE-KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVA  291 (387)
Q Consensus       214 ~~v~~yd~~~~~-~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~  291 (387)
                      ..+.+|+..... ...+++.+......-   ...+.+.++|++.+..|  ..+.+|+...++ +..... ........++
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g---~V~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl  135 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKG---PVTAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAF-YDSPFYITSL  135 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS----EEEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEE-E-BSSSEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecC---cceEhhhhCCEEEEeec--CEEEEEEccCcccchhhhe-ecceEEEEEE
Confidence            578889888851 000166554333221   12456677888554433  589999998888 776664 3334455667


Q ss_pred             EEeCCeEEEEeCCCC-eEEEEeCCCCceeEccccccccCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552          292 AMDEEVLYGIDENSC-TLSRYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       292 ~~~~~~ly~~~~~~~-~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~  356 (387)
                      .+.++.|++-+...+ .++.||.+..+-..+..........++..+ ++..++++...+++.++...
T Consensus       136 ~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  136 SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            778887776654333 467789877777787765555544445555 65666665666778777666

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.07  E-value=1.6  Score=42.79  Aligned_cols=177  Identities=8%  Similarity=-0.006  Sum_probs=96.1

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+++-+.+...+......+....+.+|++....+.      ...++++|..+++    ...+........  
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~----~~~lt~~~~~~~--  309 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA----LTRITRHRAIDT--  309 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC----eEECccCCCCcc--
Confidence            4689999998887777655432222222222345665543221      2468889999888    877764321111  


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W  318 (387)
                        .....-||+ |++.....  ..++.+|+.+++++.+...... ...+.....|+.|++.....+  .|+.+|++++..
T Consensus       310 --~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        310 --EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             --ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence              112223554 55443322  5788899999888776421111 112223234556666654333  688999999887


Q ss_pred             eEccccccccCceEEEEeCCeEEEEec-C--CCeEEEEeccC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCE-N--GGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg-~--~~~i~~~d~~~  357 (387)
                      +.+...... ... ...-+|+.+++.. .  ...++++|...
T Consensus       387 ~~lt~~~~d-~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G  426 (448)
T PRK04792        387 QVLTSTRLD-ESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDG  426 (448)
T ss_pred             EEccCCCCC-CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence            766533211 111 2444555444432 2  24577788763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.89  E-value=1.1  Score=42.27  Aligned_cols=147  Identities=22%  Similarity=0.231  Sum_probs=79.1

Q ss_pred             CccEEEeccCCc--eeeC-----CCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECC--CCccccCeEEc
Q 016552          164 TRPLIFDPICRT--WTFG-----PELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLM--NGEKNSRWEKT  233 (387)
Q Consensus       164 ~~~~vyd~~t~~--W~~l-----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~~~~~W~~~  233 (387)
                      +.+++|+...+.  ....     ++-..||+  .+.. -+..+||+.-..        +.+.+|+..  +..    ++.+
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh--~~f~pdg~~~Yv~~e~s--------~~v~v~~~~~~~g~----~~~~  231 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH--LAFSPDGKYAYVVNELS--------NTVSVFDYDPSDGS----LTEI  231 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEE--EEE-TTSSEEEEEETTT--------TEEEEEEEETTTTE----EEEE
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcE--EEEcCCcCEEEEecCCC--------CcEEEEeecccCCc----eeEE
Confidence            568888776655  5442     22223442  1222 234789986443        366666666  555    5544


Q ss_pred             ---CCCCCCCccccceEEEEE--CCE-EEEEeeeCCeEEEEEC--CCCceeecccccccCCCCcEEEE--eCCeEEEEeC
Q 016552          234 ---GELKDGRFSREAIDAVGW--KGK-LCLVNVKGAEGAVYDV--VANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDE  303 (387)
Q Consensus       234 ---~~~p~~~~~~~~~~~~~~--~g~-lyv~gg~~~~i~~yD~--~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~  303 (387)
                         +.+|...........+.+  ||+ ||+.....+.|.+|+.  ++++-+.+......+..-..+++  .|+.||+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence               344433211112233333  455 7776655578999987  44566655542222221122333  4667887777


Q ss_pred             CCCeEEEE--eCCCCceeEcccc
Q 016552          304 NSCTLSRY--DEVMDDWKEVVKS  324 (387)
Q Consensus       304 ~~~~l~~y--d~~~~~W~~v~~~  324 (387)
                      .++.|.+|  |.+++.+..+...
T Consensus       312 ~s~~v~vf~~d~~tG~l~~~~~~  334 (345)
T PF10282_consen  312 DSNTVSVFDIDPDTGKLTPVGSS  334 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEEEeCCCCcEEEeccc
Confidence            77777666  6678888887653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.72  E-value=1.3  Score=43.72  Aligned_cols=178  Identities=15%  Similarity=0.062  Sum_probs=96.4

Q ss_pred             CccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+.+||...+  .-+.+..+....... +....+++++.|+.+.        ++.++|..+.+    =...-.......
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~-~f~p~g~~i~Sgs~D~--------tvriWd~~~~~----~~~~l~~hs~~i  291 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSV-AFSPDGNLLVSGSDDG--------TVRIWDVRTGE----CVRKLKGHSDGI  291 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEE-EecCCCCEEEEecCCC--------cEEEEeccCCe----EEEeeeccCCce
Confidence            35778888433  334444444444222 2223447888887765        88999999876    332221111111


Q ss_pred             cccceEEEEECCEEEEEeeeCCeEEEEECCCCcee---ecccccccCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCc
Q 016552          242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD---DMREGMVRGWRGPVAAMDEEVLYGID-ENSCTLSRYDEVMDD  317 (387)
Q Consensus       242 ~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~---~~~~~~~~~~~~~~~~~~~~~ly~~~-~~~~~l~~yd~~~~~  317 (387)
                      .   ..+.--+|.+++.+.++..+.+||+.++.-.   ++....... ....+...-+-.|++. ..++.+..||.....
T Consensus       292 s---~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  292 S---GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             E---EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence            1   2233346677777766688999999988742   222211111 2233444333344444 345678888887653


Q ss_pred             eeEccc-ccc-ccCceEEE-EeCCeEEEEecCCCeEEEEeccCC
Q 016552          318 WKEVVK-SDL-LKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~-~~~-~~~~~~~~-~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      =..... ... .+..+..+ ..+++..+.|.....|.++|+.+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            222111 111 11222222 446778888778889999999954

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=95.72  E-value=0.23  Score=39.54  Aligned_cols=75  Identities=11%  Similarity=0.023  Sum_probs=53.5

Q ss_pred             EEECCEEEEEeee----CCeEEEEECCCCceeecccc--cccCCCCcEEEEeCCeEEEEeCCC-C-----eEEEE-eCCC
Q 016552          249 VGWKGKLCLVNVK----GAEGAVYDVVANTWDDMREG--MVRGWRGPVAAMDEEVLYGIDENS-C-----TLSRY-DEVM  315 (387)
Q Consensus       249 ~~~~g~lyv~gg~----~~~i~~yD~~~~~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~~~~-~-----~l~~y-d~~~  315 (387)
                      +.+||.+|.+...    ...|.+||+++++|+.++.+  ..........+..+|+|-++.... +     +||+. |.++
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k   81 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK   81 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence            5679999988765    27899999999999988752  223334667778889998876432 1     35555 4567


Q ss_pred             CceeEccc
Q 016552          316 DDWKEVVK  323 (387)
Q Consensus       316 ~~W~~v~~  323 (387)
                      .+|.+...
T Consensus        82 ~~Wsk~~~   89 (129)
T PF08268_consen   82 QEWSKKHI   89 (129)
T ss_pred             ceEEEEEE
Confidence            89998653

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=95.70  E-value=0.65  Score=41.87  Aligned_cols=150  Identities=14%  Similarity=0.086  Sum_probs=86.5

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD  294 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~  294 (387)
                      ++..||..++.    -...-....+.     ..++..|..--+.|+-+..+..||+.++.=..+... ..+.  .++...
T Consensus        36 slrlYdv~~~~----l~~~~~~~~pl-----L~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-~~~i--~ci~~~  103 (323)
T KOG1036|consen   36 SLRLYDVPANS----LKLKFKHGAPL-----LDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-DEGI--RCIEYS  103 (323)
T ss_pred             cEEEEeccchh----hhhheecCCce-----eeeeccCCceEEEeccCceEEEEEecCCcceeeccC-CCce--EEEEee
Confidence            56778887776    22221111111     224444544344555557899999998875555431 1111  111111


Q ss_pred             -CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCc
Q 016552          295 -EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGF  372 (387)
Q Consensus       295 -~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~  372 (387)
                       .....+-|+.++.|..||+.+..  .+....... ...++...|..+|+|..+..+.+||+.+...+  .++ ..+-.+
T Consensus       104 ~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~--~q~reS~lky  178 (323)
T KOG1036|consen  104 YEVGCVISGSWDKTIKFWDPRNKV--VVGTFDQGK-KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP--FQRRESSLKY  178 (323)
T ss_pred             ccCCeEEEcccCccEEEEeccccc--cccccccCc-eEEEEeccCCEEEEeecCceEEEEEcccccch--hhhcccccee
Confidence             11245566678899999997621  111111122 44566667788888888899999999965222  133 555667


Q ss_pred             eeEEEEEcc
Q 016552          373 EALSVHIMP  381 (387)
Q Consensus       373 ~~~~~~~~~  381 (387)
                      +..++..+|
T Consensus       179 qtR~v~~~p  187 (323)
T KOG1036|consen  179 QTRCVALVP  187 (323)
T ss_pred             EEEEEEEec
Confidence            888888888

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.38  E-value=1.4  Score=43.70  Aligned_cols=119  Identities=14%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc--cceEEEEEC-CEEEEEeeeCCeEE
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR--EAIDAVGWK-GKLCLVNVKGAEGA  266 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~--~~~~~~~~~-g~lyv~gg~~~~i~  266 (387)
                      ..++.+++||+....         ..+.++|..+++..  |+.-...+......  -....++.+ +++|+.... ..+.
T Consensus        56 sPvv~~g~vy~~~~~---------g~l~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~-g~v~  123 (488)
T cd00216          56 TPLVVDGDMYFTTSH---------SALFALDAATGKVL--WRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD-GRLV  123 (488)
T ss_pred             CCEEECCEEEEeCCC---------CcEEEEECCCChhh--ceeCCCCCccccccccccCCcEEccCCeEEEecCC-CeEE
Confidence            446778999986431         36788899888766  88644322100000  001124456 888876543 4899


Q ss_pred             EEECCCC--ceeecccccc-cCC-CCcEEEEeCCeEEEEeC--------CCCeEEEEeCCCC--ceeE
Q 016552          267 VYDVVAN--TWDDMREGMV-RGW-RGPVAAMDEEVLYGIDE--------NSCTLSRYDEVMD--DWKE  320 (387)
Q Consensus       267 ~yD~~~~--~W~~~~~~~~-~~~-~~~~~~~~~~~ly~~~~--------~~~~l~~yd~~~~--~W~~  320 (387)
                      ++|.+++  .|+.-..... ... ...+.++.++.+|+-..        ..+.++++|.+++  .|+.
T Consensus       124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence            9999877  5875432110 111 12234455666665421        2467999999876  5865

The alignment model contains an 8-bladed beta-propeller.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.30  E-value=3.1  Score=40.47  Aligned_cols=175  Identities=5%  Similarity=-0.051  Sum_probs=98.4

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ..+|++|..+++=+.+...+..-... ...-++ +|.+.-....      ...++++|..++.    ++.+...+.... 
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~-~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~----~~~LT~~~~~d~-  280 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGMLVVS-DVSKDGSKLLLTMAPKG------QPDIYLYDTNTKT----LTQITNYPGIDV-  280 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCcEEee-EECCCCCEEEEEEccCC------CcEEEEEECCCCc----EEEcccCCCccC-
Confidence            36788888888777765432211111 122244 5655433211      2478999999998    998875542111 


Q ss_pred             ccceEEEEECC-EEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--------CeEEEE
Q 016552          243 REAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------CTLSRY  311 (387)
Q Consensus       243 ~~~~~~~~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--------~~l~~y  311 (387)
                         .....-|| +||+.....  ..++.+|+.+++.+.+...   +.........|+.|.+.....        ..|+.+
T Consensus       281 ---~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~  354 (419)
T PRK04043        281 ---NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI  354 (419)
T ss_pred             ---ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence               11222345 577765433  5799999998888666431   111222333444454444321        369999


Q ss_pred             eCCCCceeEccccccccCceEEEEeCCeEEE-Eec--CCCeEEEEeccCC
Q 016552          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCA-VCE--NGGGIVVVDVKAA  358 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v-~gg--~~~~i~~~d~~~~  358 (387)
                      |.+++.++.+.....  .......-+|+.++ ...  +...+.+++.+..
T Consensus       355 d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        355 STNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             ECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            999999888776421  11223455666444 432  2345777887743

>smart00284 OLF Olfactomedin-like domains

Probab=95.25  E-value=2.1  Score=38.27  Aligned_cols=191  Identities=15%  Similarity=0.175  Sum_probs=105.5

Q ss_pred             cCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE
Q 016552          172 ICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW  251 (387)
Q Consensus       172 ~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  251 (387)
                      ..+.|.+=|..+.+.        ++++|++.+.+.     ..+.+..|....+-...++...-.+|.+..   ....+++
T Consensus        19 ~~GaWmkD~~~~~~~--------~~~~wv~~~~~~-----~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~---GtG~VVY   82 (255)
T smart00284       19 KSGAWMKDPLWNTTK--------KSLYWYMPLNTR-----VLRSVREYSSMSDFQMGKNPTDHPLPHAGQ---GTGVVVY   82 (255)
T ss_pred             ccceeecCCCCCCCC--------CceEEEEccccC-----CCcEEEEecCHHHHhccCCceEEECCCccc---cccEEEE
Confidence            456777654332211        468888866532     123556664432211111444444664432   3568999


Q ss_pred             CCEEEEEeeeCCeEEEEECCCCce---eecccc-----cccCCCC---cEEEEeCCeEEEEe---CCCCeE--EEEeCCC
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTW---DDMREG-----MVRGWRG---PVAAMDEEVLYGID---ENSCTL--SRYDEVM  315 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W---~~~~~~-----~~~~~~~---~~~~~~~~~ly~~~---~~~~~l--~~yd~~~  315 (387)
                      +|.+|.-......|..||+.+++=   ..++..     .+-.+.+   .=.++..+-|+++=   .+.|.|  -..|+++
T Consensus        83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t  162 (255)
T smart00284       83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT  162 (255)
T ss_pred             CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence            999998766567899999999864   444421     1111112   22445555677763   333544  3577765


Q ss_pred             C----ceeEccccccccCceEEEEeCCeEEEEecC---CCe-EEEEeccCCCCCCceE-EeCCCCc-eeEEEEEccCC
Q 016552          316 D----DWKEVVKSDLLKGARHAAAGGGRVCAVCEN---GGG-IVVVDVKAAAAPTIFV-VDTPLGF-EALSVHIMPRM  383 (387)
Q Consensus       316 ~----~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~-i~~~d~~~~~~~~~W~-~~~p~~~-~~~~~~~~~~~  383 (387)
                      -    +|..  .. +.+....+..+.|.||++-..   +.. .+.||..+. . .... ++.+..+ -...++|+|+=
T Consensus       163 L~ve~tW~T--~~-~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~-~-~~~~~i~f~n~y~~~s~l~YNP~d  235 (255)
T smart00284      163 LTIENTWIT--TY-NKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTG-K-EGHLDIPFENMYEYISMLDYNPND  235 (255)
T ss_pred             ceEEEEEEc--CC-CcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCC-c-cceeeeeeccccccceeceeCCCC
Confidence            3    4544  11 222334556677899999632   233 488899865 2 2233 4555444 46668898874

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.23  E-value=2.5  Score=39.00  Aligned_cols=204  Identities=15%  Similarity=0.161  Sum_probs=90.1

Q ss_pred             EEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC-CCCCCCccee-EEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP-ELVTPRRWCA-AGCSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~-~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      ...++..|++|.. .       -++.-.=.-.+|++++ +.+.+-..+. .+.-++.+++++...           .+|-
T Consensus        68 ~f~~~~g~ivG~~-g-------~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G-----------~iy~  128 (302)
T PF14870_consen   68 SFDGNEGWIVGEP-G-------LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG-----------AIYR  128 (302)
T ss_dssp             EEETTEEEEEEET-T-------EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT-------------EEE
T ss_pred             EecCCceEEEcCC-c-------eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC-----------cEEE
Confidence            3356778887641 1       1232233456999975 2233333333 334456677765432           2233


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEE
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLY  299 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly  299 (387)
                      ....-.+  |+.+..-...-..   .....-+|++++++..+......|+....|......  ..++-.++. ..++.|+
T Consensus       129 T~DgG~t--W~~~~~~~~gs~~---~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw  201 (302)
T PF14870_consen  129 TTDGGKT--WQAVVSETSGSIN---DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLW  201 (302)
T ss_dssp             ESSTTSS--EEEEE-S----EE---EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EE
T ss_pred             eCCCCCC--eeEcccCCcceeE---eEEECCCCcEEEEECcccEEEEecCCCccceEEccC--ccceehhceecCCCCEE
Confidence            3322222  9987633222110   112234677666776666677889999999887652  223333333 3466788


Q ss_pred             EEeCCCCeEEEEe--CCCCceeEccccccccC-c-eEEEEe-CCeEEEEecCCCeEEEEeccCCCCCCceEE-----eCC
Q 016552          300 GIDENSCTLSRYD--EVMDDWKEVVKSDLLKG-A-RHAAAG-GGRVCAVCENGGGIVVVDVKAAAAPTIFVV-----DTP  369 (387)
Q Consensus       300 ~~~~~~~~l~~yd--~~~~~W~~v~~~~~~~~-~-~~~~~~-~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-----~~p  369 (387)
                      ++. ..+.|..=|  ....+|.+-..+....+ . .-++.. ++.+++.||.+ .+++=+-.    |+.|+.     ..|
T Consensus       202 ~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~S~Dg----GktW~~~~~~~~~~  275 (302)
T PF14870_consen  202 MLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLVSTDG----GKTWQKDRVGENVP  275 (302)
T ss_dssp             EEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESST----TSS-EE-GGGTTSS
T ss_pred             EEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEEeCCC----CccceECccccCCC
Confidence            876 466677666  45678888333222222 1 222322 47788876665 34433333    358995     335


Q ss_pred             CCceeEEEE
Q 016552          370 LGFEALSVH  378 (387)
Q Consensus       370 ~~~~~~~~~  378 (387)
                      ..|..+.|-
T Consensus       276 ~n~~~i~f~  284 (302)
T PF14870_consen  276 SNLYRIVFV  284 (302)
T ss_dssp             S---EEEEE
T ss_pred             CceEEEEEc
Confidence            566555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.20  E-value=0.38  Score=44.09  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             eEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccc
Q 016552          246 IDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKS  324 (387)
Q Consensus       246 ~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~  324 (387)
                      ...+-++++ |++...+ ..+-+.|..|......-.+   -.++.+.+-..|++.+-|..+.+|..||.+.+.--.+-  
T Consensus       323 VNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~g---HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL--  396 (499)
T KOG0281|consen  323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL--  396 (499)
T ss_pred             eeeeccccc-eEEEecCCceEEEEeccceeeehhhhc---ccccceehhccCeEEEecCCCceEEEEeccccHHHHHH--
Confidence            445667888 5555444 7788888888776543221   22344555567898888877889999999887543322  


Q ss_pred             ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          325 DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +....-..++-.+++=+|-|+..+.|-++|..++
T Consensus       397 eGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  397 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             hchHHhhhheeecCceeeeccccceEEEEecccc
Confidence            1222234567778888888888888888888866

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.16  E-value=2.6  Score=38.86  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             cCCceeeCCCCCCCCcceeEEEeC-CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE
Q 016552          172 ICRTWTFGPELVTPRRWCAAGCSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG  250 (387)
Q Consensus       172 ~t~~W~~l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  250 (387)
                      ..+.|+.+. +|...........+ ++-|++|-..         .  +|-....-.+  |.....-..............
T Consensus         4 ~~~~W~~v~-l~t~~~l~dV~F~d~~~G~~VG~~g---------~--il~T~DGG~t--W~~~~~~~~~~~~~~l~~I~f   69 (302)
T PF14870_consen    4 SGNSWQQVS-LPTDKPLLDVAFVDPNHGWAVGAYG---------T--ILKTTDGGKT--WQPVSLDLDNPFDYHLNSISF   69 (302)
T ss_dssp             SS--EEEEE--S-SS-EEEEEESSSS-EEEEETTT---------E--EEEESSTTSS---EE-----S-----EEEEEEE
T ss_pred             cCCCcEEee-cCCCCceEEEEEecCCEEEEEecCC---------E--EEEECCCCcc--ccccccCCCccceeeEEEEEe
Confidence            356788875 44444444444444 5668876432         1  2222222222  998762211111111122334


Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeeccccccc-CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccC
Q 016552          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVR-GWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG  329 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~-~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~  329 (387)
                      .++..|++|..+ .++.-.=.-.+|+.++...+. +......+..++..++.+ ..|.|+.=.-...+|+.+.....-.-
T Consensus        70 ~~~~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~  147 (302)
T PF14870_consen   70 DGNEGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSETSGSI  147 (302)
T ss_dssp             ETTEEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S----E
T ss_pred             cCCceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCCccee
Confidence            577888876543 333333355689998632111 111122334555666665 35778887778889998764322111


Q ss_pred             ceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE---eCCCCceeEEEE
Q 016552          330 ARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV---DTPLGFEALSVH  378 (387)
Q Consensus       330 ~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~---~~p~~~~~~~~~  378 (387)
                      ......-+|++++++..|.-....|.-+.    .|+.   ......+.|++.
T Consensus       148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~----~w~~~~r~~~~riq~~gf~  195 (302)
T PF14870_consen  148 NDITRSSDGRYVAVSSRGNFYSSWDPGQT----TWQPHNRNSSRRIQSMGFS  195 (302)
T ss_dssp             EEEEE-TTS-EEEEETTSSEEEEE-TT-S----S-EEEE--SSS-EEEEEE-
T ss_pred             EeEEECCCCcEEEEECcccEEEEecCCCc----cceEEccCccceehhceec
Confidence            12223456777777666665556676654    6874   334445555543

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=95.13  E-value=2.3  Score=38.08  Aligned_cols=176  Identities=19%  Similarity=0.219  Sum_probs=98.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCc-cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGE-KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      ++++|++.+...       +.+..|....+- ...+....-.+|.+..   +...++++|.+|.--.....|..||+.++
T Consensus        30 ~~~iy~~~~~~~-------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~---GtG~vVYngslYY~~~~s~~IvkydL~t~   99 (250)
T PF02191_consen   30 SEKIYVTSGFSG-------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQ---GTGHVVYNGSLYYNKYNSRNIVKYDLTTR   99 (250)
T ss_pred             CCCEEEECccCC-------CEEEEEcCHhHHhhcCCCceEEEEeceec---cCCeEEECCcEEEEecCCceEEEEECcCC
Confidence            457888877644       144555332221 0001444445554332   35678899999988776689999999988


Q ss_pred             c---eeeccccccc-----CCCC---cEEEEeCCeEEEEeC---CCCe--EEEEeCCC----CceeEccccccccCceEE
Q 016552          274 T---WDDMREGMVR-----GWRG---PVAAMDEEVLYGIDE---NSCT--LSRYDEVM----DDWKEVVKSDLLKGARHA  333 (387)
Q Consensus       274 ~---W~~~~~~~~~-----~~~~---~~~~~~~~~ly~~~~---~~~~--l~~yd~~~----~~W~~v~~~~~~~~~~~~  333 (387)
                      +   |..++.....     .+.+   .-.++.++-|+++-.   ..|.  |-..|+++    .+|..-  . +.+....+
T Consensus       100 ~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~--~-~k~~~~na  176 (250)
T PF02191_consen  100 SVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS--Y-PKRSAGNA  176 (250)
T ss_pred             cEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec--c-Cchhhcce
Confidence            5   5556532111     1111   224455556777632   2333  34467654    356531  1 22233445


Q ss_pred             EEeCCeEEEEecCC---CeE-EEEeccCCCCCCceEEeCCCCc-eeEEEEEccCCC
Q 016552          334 AAGGGRVCAVCENG---GGI-VVVDVKAAAAPTIFVVDTPLGF-EALSVHIMPRMS  384 (387)
Q Consensus       334 ~~~~g~i~v~gg~~---~~i-~~~d~~~~~~~~~W~~~~p~~~-~~~~~~~~~~~~  384 (387)
                      ..+.|.||++-...   ..| ++||..++ +...=.++.+..+ ....++|.|+=.
T Consensus       177 FmvCGvLY~~~s~~~~~~~I~yafDt~t~-~~~~~~i~f~~~~~~~~~l~YNP~dk  231 (250)
T PF02191_consen  177 FMVCGVLYATDSYDTRDTEIFYAFDTYTG-KEEDVSIPFPNPYGNISMLSYNPRDK  231 (250)
T ss_pred             eeEeeEEEEEEECCCCCcEEEEEEECCCC-ceeceeeeeccccCceEeeeECCCCC
Confidence            66778999997542   333 88999965 2221113444333 677889999743

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.00  E-value=3.9  Score=43.42  Aligned_cols=144  Identities=8%  Similarity=0.022  Sum_probs=73.5

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-  273 (387)
                      +++++++|+.+.        .+.+||..+....  ...+......     .......++..++.++.+..+.++|+... 
T Consensus       629 ~g~~latgs~dg--------~I~iwD~~~~~~~--~~~~~~h~~~-----V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        629 SGRSLAFGSADH--------KVYYYDLRNPKLP--LCTMIGHSKT-----VSYVRFVDSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             CCCEEEEEeCCC--------eEEEEECCCCCcc--ceEecCCCCC-----EEEEEEeCCCEEEEEECCCEEEEEeCCCCc
Confidence            466777776544        7888998765300  2222111111     01223346666666666678999998653 


Q ss_pred             ---ceeecccccccCCCC--cEEEE-eCCeEEEEeCCCCeEEEEeCCCCc--eeEcc----cccc-----ccCceEEE--
Q 016552          274 ---TWDDMREGMVRGWRG--PVAAM-DEEVLYGIDENSCTLSRYDEVMDD--WKEVV----KSDL-----LKGARHAA--  334 (387)
Q Consensus       274 ---~W~~~~~~~~~~~~~--~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~--W~~v~----~~~~-----~~~~~~~~--  334 (387)
                         .|..+.. . .+...  ..++. .++.+++.++.++.+.+||.....  |....    ....     .......+  
T Consensus       694 ~~~~~~~l~~-~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w  771 (793)
T PLN00181        694 SGINETPLHS-F-MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW  771 (793)
T ss_pred             cccCCcceEE-E-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEE
Confidence               2332221 0 11111  12222 245666667678899999976432  22110    0000     11112222  


Q ss_pred             EeCCeEEEEecCCCeEEEEec
Q 016552          335 AGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       335 ~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      .-++..++.|+..+.|.+||+
T Consensus       772 s~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        772 RGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCeEEEecCCCcEEEEec
Confidence            335667777777788888875

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.99  E-value=0.46  Score=43.30  Aligned_cols=107  Identities=10%  Similarity=0.208  Sum_probs=64.9

Q ss_pred             CCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC----
Q 016552          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL----  236 (387)
Q Consensus       162 ~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~----  236 (387)
                      .+..+-.||..+.+|..+..--.. ........ +++||+.|-...  +......+..||..+.+    |..++.-    
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~--~~~~~~~la~yd~~~~~----w~~~~~~~s~~   86 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTL--NGTNSSNLATYDFKNQT----WSSLGGGSSNS   86 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEE--CCCCceeEEEEecCCCe----eeecCCccccc
Confidence            577889999999999986543111 11222223 678888886654  22245578999999999    9988752    


Q ss_pred             -CCCCccccceEEEEECC-EEEEEeeeC---CeEEEEECCCCceeeccc
Q 016552          237 -KDGRFSREAIDAVGWKG-KLCLVNVKG---AEGAVYDVVANTWDDMRE  280 (387)
Q Consensus       237 -p~~~~~~~~~~~~~~~g-~lyv~gg~~---~~i~~yD~~~~~W~~~~~  280 (387)
                       |.+...   ......|+ .+++.|...   ..+..||  ..+|+.+..
T Consensus        87 ipgpv~a---~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVTA---LTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             CCCcEEE---EEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence             322110   11111233 466555422   5577775  557998875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.93  E-value=0.79  Score=42.56  Aligned_cols=193  Identities=19%  Similarity=0.206  Sum_probs=95.5

Q ss_pred             CCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCcee
Q 016552           98 TPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT  177 (387)
Q Consensus        98 ~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~  177 (387)
                      +..++-+.|...++-..--+.|.+        ..-|.....+|.+.+-+|.+..+.=-..+ .......-+|++..+-.-
T Consensus       116 Pa~SVtVVDl~~~kvv~ei~~PGC--------~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G-k~~~~~t~~F~~~~dp~f  186 (342)
T PF06433_consen  116 PATSVTVVDLAAKKVVGEIDTPGC--------WLIYPSGNRGFSMLCGDGSLLTVTLDADG-KEAQKSTKVFDPDDDPLF  186 (342)
T ss_dssp             SSEEEEEEETTTTEEEEEEEGTSE--------EEEEEEETTEEEEEETTSCEEEEEETSTS-SEEEEEEEESSTTTS-B-
T ss_pred             CCCeEEEEECCCCceeeeecCCCE--------EEEEecCCCceEEEecCCceEEEEECCCC-CEeEeeccccCCCCcccc
Confidence            677788899988876544344442        11122233457777777776665431121 112223356676665433


Q ss_pred             eCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc-ccCeEEcCCCCCCCccccceEEEE--ECCE
Q 016552          178 FGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK-NSRWEKTGELKDGRFSREAIDAVG--WKGK  254 (387)
Q Consensus       178 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~-~~~W~~~~~~p~~~~~~~~~~~~~--~~g~  254 (387)
                      .-+.....-.......++|+||-+-=.+.     ...-...+...++.+ .-.|+.-.      +    ...+.  -.++
T Consensus       187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-----~~~~~~~~~~~t~~e~~~~WrPGG------~----Q~~A~~~~~~r  251 (342)
T PF06433_consen  187 EHPAYSRDGGRLYFVSYEGNVYSADLSGD-----SAKFGKPWSLLTDAEKADGWRPGG------W----QLIAYHAASGR  251 (342)
T ss_dssp             S--EEETTTTEEEEEBTTSEEEEEEETTS-----SEEEEEEEESS-HHHHHTTEEE-S------S----S-EEEETTTTE
T ss_pred             cccceECCCCeEEEEecCCEEEEEeccCC-----cccccCcccccCccccccCcCCcc------e----eeeeeccccCe
Confidence            32222222223445677888887532211     111222333322110 00166443      2    22222  2578


Q ss_pred             EEEEeeeC---------CeEEEEECCCCcee-ecccccccCCCCcEEEEeC-C--eEEEEeCCCCeEEEEeCCCCce
Q 016552          255 LCLVNVKG---------AEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDE-E--VLYGIDENSCTLSRYDEVMDDW  318 (387)
Q Consensus       255 lyv~gg~~---------~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~-~--~ly~~~~~~~~l~~yd~~~~~W  318 (387)
                      ||++-..+         ..|++||+++++=- .++-  ...  ..++.+.. .  .||.+...++.|.+||..+++-
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            99874332         78999999998632 2221  111  12344432 2  5777776678999999999843

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02889 tolB translocation protein TolB; Provisional

Probab=94.81  E-value=4.3  Score=39.55  Aligned_cols=177  Identities=9%  Similarity=-0.030  Sum_probs=89.8

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+++=+.+...+......+....+.+|++....+.      ...++.+|..++.    ...+..-....   
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~---  286 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSG----LRRLTQSSGID---  286 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC------CceEEEEECCCCC----cEECCCCCCCC---
Confidence            4589999988876666544422221111122335655433222      2467788887776    66654321110   


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W  318 (387)
                       ......-||+ |++.+...  ..++.+|..++..+.+... ......+.....|..|++.....+  .|++||.+++..
T Consensus       287 -~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        287 -TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             -cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence             1122333565 55443322  4677778777766655321 111112222223445555543333  699999998877


Q ss_pred             eEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~  357 (387)
                      +.+.....  .......-+|+.+++...   ...++++|.+.
T Consensus       365 ~~lt~~~~--~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        365 TALTDTTR--DESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             EEccCCCC--ccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            76653211  122234556665555432   24567777753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.77  E-value=4.4  Score=39.53  Aligned_cols=178  Identities=7%  Similarity=-0.036  Sum_probs=96.7

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+++-+.+...+...........+.+|++....+.      ...+.++|..+++    -..+........  
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~----~~~lt~~~~~~~--  295 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ----LTRLTNHFGIDT--  295 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC----eEECccCCCCcc--
Confidence            4689999999888777655432222222222345655432221      1478889998888    666653221111  


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W  318 (387)
                        .....-||+ |++.....  ..++.+|..+++.+.+... ......+...-.++.|++.....+  .|++||++++..
T Consensus       296 --~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        296 --EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             --ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence              112233554 54443322  4688889888887766421 111112222234556666654332  599999998888


Q ss_pred             eEccccccccCceEEEEeCCeEEEEec---CCCeEEEEeccCC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCE---NGGGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg---~~~~i~~~d~~~~  358 (387)
                      +.+......  ......-+|+.+++..   +...++++|.+..
T Consensus       373 ~~Lt~~~~~--~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        373 RTLTPGSLD--ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EECCCCCCC--CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            766543211  1223455666555443   2356888888643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.70  E-value=4.5  Score=39.33  Aligned_cols=177  Identities=10%  Similarity=0.006  Sum_probs=97.8

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+++-+.+...+..-........+.+|++....+.      ...++++|..++.    ...+..-+....  
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~~--  290 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ----LSRVTNHPAIDT--  290 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC----eEEcccCCCCcC--
Confidence            4689999999988877654422111111122345654432211      1478899999998    877764321111  


Q ss_pred             cceEEEEECC-EEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCce
Q 016552          244 EAIDAVGWKG-KLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g-~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W  318 (387)
                        .....-|| +|++.....  ..++.+|+.+++++.+... ......+.....++.|++.....+  .|+.+|.+++..
T Consensus       291 --~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        291 --EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             --CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence              11222355 465554332  5788899988888766421 111111222234556666654333  589999999888


Q ss_pred             eEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~  357 (387)
                      +.+.......  .....-+|+.+++...   ...+++++...
T Consensus       368 ~~lt~~~~~~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        368 RILTDTSLDE--SPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEccCCCCCC--CceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            7776432211  1234556676666532   24577777764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=94.67  E-value=3.2  Score=37.43  Aligned_cols=189  Identities=14%  Similarity=0.109  Sum_probs=106.5

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC----CCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP----ELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~----~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      -.+..+.+||.+.       .+.+|+..+..=+-..    .++....+.+++. .++.-++.|..+        .++..+
T Consensus       107 PSg~~VAcGGLdN-------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--------~TCalW  171 (343)
T KOG0286|consen  107 PSGNFVACGGLDN-------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--------MTCALW  171 (343)
T ss_pred             CCCCeEEecCcCc-------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC--------ceEEEE
Confidence            4677888888643       4688888866433222    2333444444443 344444444322        266778


Q ss_pred             ECCCCccccCeEEcCCCCCCCccccceE-EE-EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCC
Q 016552          220 DLMNGEKNSRWEKTGELKDGRFSREAID-AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEE  296 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~-~~-~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~  296 (387)
                      |.++.+    =...-.   +.. .+..+ .. -.+++.|+-|+.+......|.....-...=.+....  ..++. .-+|
T Consensus       172 Die~g~----~~~~f~---GH~-gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD--INsv~ffP~G  241 (343)
T KOG0286|consen  172 DIETGQ----QTQVFH---GHT-GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD--INSVRFFPSG  241 (343)
T ss_pred             Ecccce----EEEEec---CCc-ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc--cceEEEccCC
Confidence            888887    222110   000 00010 11 116788888887767777777766432221111111  12222 3466


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceeEcccccc-ccC-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          297 VLYGIDENSCTLSRYDEVMDDWKEVVKSDL-LKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~-~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .-|..|.+++....||...+.=..+-..+. ..+ ........|++++.|.....+.++|.-+.
T Consensus       242 ~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  242 DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence            777777778889999999884444333332 222 34445678999999888889999998854

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.67  E-value=0.88  Score=45.65  Aligned_cols=119  Identities=15%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc-----cceEEEEECCEEEEEeeeCCe
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR-----EAIDAVGWKGKLCLVNVKGAE  264 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~-----~~~~~~~~~g~lyv~gg~~~~  264 (387)
                      ..++.++.||+....         ..+.++|..+++..  |+.-...+......     .....++.++++|+.... ..
T Consensus        64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~l--W~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g~  131 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKEL--WKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-AR  131 (527)
T ss_pred             CCEEECCEEEEECCC---------CcEEEEECCCCcee--eEecCCCCcccccccccccccccceEECCEEEEEcCC-CE
Confidence            445678999996431         25788999988866  88654333211100     001235678899875443 47


Q ss_pred             EEEEECCCC--ceeecccccccCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceeE
Q 016552          265 GAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSRYDEVMD--DWKE  320 (387)
Q Consensus       265 i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~-----~~~~l~~yd~~~~--~W~~  320 (387)
                      +.++|.+++  .|+.-......+. ...+.++.+++||+-..     ..+.|.+||.+++  .|+.
T Consensus       132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            999999888  5875432122111 12334456778777532     2468999999886  4764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.66  E-value=4.9  Score=39.55  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=76.5

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-E
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-M  293 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~  293 (387)
                      .+.+||...+...  -..+...+...+    +.+..-+|.+++.|+.+..+.++|.++.+-...-.....+  ..+++ -
T Consensus       226 tiriwd~~~~~~~--~~~l~gH~~~v~----~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~  297 (456)
T KOG0266|consen  226 TLRIWDLKDDGRN--LKTLKGHSTYVT----SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFS  297 (456)
T ss_pred             eEEEeeccCCCeE--EEEecCCCCceE----EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEEC
Confidence            7888999544211  334443433321    3344446678888888889999999985543321111111  11222 2


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCCCcee---Eccccccc-cCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 DEEVLYGIDENSCTLSRYDEVMDDWK---EVVKSDLL-KGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~~~~~~l~~yd~~~~~W~---~v~~~~~~-~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.+++.+..++.+.+||.++..=.   .+...... ....+...-+++.++.+..+..+-.||+...
T Consensus       298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            35566666666788999999888632   33322222 2233333445666666556667888888754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.62  E-value=4.3  Score=38.68  Aligned_cols=199  Identities=14%  Similarity=0.152  Sum_probs=110.1

Q ss_pred             EEECCEEEEEecccCCCCCCCCccEEEeccCCc--eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      +..++++|+... +       ..++.+|+.+.+  |+....-............+|+||+-...         ..+.+||
T Consensus        65 ~~~dg~v~~~~~-~-------G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~---------g~~y~ld  127 (370)
T COG1520          65 ADGDGTVYVGTR-D-------GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD---------GKLYALD  127 (370)
T ss_pred             EeeCCeEEEecC-C-------CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc---------ceEEEEE
Confidence            566788888611 1       168899999886  87643220011111122237888775321         1678899


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-cccCCCCcEEEEeCCe
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-MVRGWRGPVAAMDEEV  297 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-~~~~~~~~~~~~~~~~  297 (387)
                      ..+++..  |....... ....   ...++.++.+|+.. ....+.++|..++  .|..--.. ......+..+ +.++.
T Consensus       128 ~~~G~~~--W~~~~~~~-~~~~---~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~  199 (370)
T COG1520         128 ASTGTLV--WSRNVGGS-PYYA---SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT  199 (370)
T ss_pred             CCCCcEE--EEEecCCC-eEEe---cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecce
Confidence            9766644  88665441 1111   33566788888775 2247888888866  58733321 1222222222 56678


Q ss_pred             EEEEeCC-CCeEEEEeCCCC--ceeEcccccc--------ccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          298 LYGIDEN-SCTLSRYDEVMD--DWKEVVKSDL--------LKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       298 ly~~~~~-~~~l~~yd~~~~--~W~~v~~~~~--------~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      +|+-... ++.++++|++++  .|..-...+.        .......+..++.+|.. ..+..++.+|....  ..+|+.
T Consensus       200 vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~-~~~g~~~~l~~~~G--~~~W~~  276 (370)
T COG1520         200 VYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG-SYGGKLLCLDADTG--ELIWSF  276 (370)
T ss_pred             EEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE-ecCCeEEEEEcCCC--ceEEEE
Confidence            8876432 457999999775  5774221111        11123334445555444 33344777777733  357887


Q ss_pred             eCC
Q 016552          367 DTP  369 (387)
Q Consensus       367 ~~p  369 (387)
                      +.+
T Consensus       277 ~~~  279 (370)
T COG1520         277 PAG  279 (370)
T ss_pred             ecc
Confidence            654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.35  E-value=5.6  Score=38.86  Aligned_cols=178  Identities=11%  Similarity=0.038  Sum_probs=94.7

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|+.+++.+.+...+...........+.+|++....+.      ...++++|..++.    -..+...+...   
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~----~~~Lt~~~~~~---  292 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGT----TTRLTDSPAID---  292 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCc----eEEccCCCCcc---
Confidence            5789999999988887655543222222222345655433221      2467888998888    77665433111   


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W  318 (387)
                       ......-||+ |++.....  ..++.+|..++..+.+... ......+.....|+.|++.....  ..++.+|++++..
T Consensus       293 -~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~  370 (435)
T PRK05137        293 -TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE  370 (435)
T ss_pred             -CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence             0122233554 44443222  5688889887776665431 11111222223455666554322  3689999987766


Q ss_pred             eEccccccccCceEEEEeCCeEEEE-ecC-C----CeEEEEeccCC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAV-CEN-G----GGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~-gg~-~----~~i~~~d~~~~  358 (387)
                      +.+.....  .......-+|+.+++ ... +    ..++++|.++.
T Consensus       371 ~~lt~~~~--~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSGFL--VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCCCC--CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            55543211  112223445554444 321 1    46888888754

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.26  E-value=0.023  Score=51.32  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=36.7

Q ss_pred             CCCChHHHHHHHhhhcC--------chhhhhhhHhhhhhhcCCCCCceeeE
Q 016552           43 LPGLPDHIAHLCLSHVH--------PSILHNVCHSWRRLIYSPSFPPFLSL   85 (387)
Q Consensus        43 ~~~LPddl~~~iL~rLP--------l~~~r~VcK~W~~li~~~~f~~~~~l   85 (387)
                      |..|||||+.+||.++=        +.++.+|||.|.-.+.+|+|.+..|+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            57899999999998753        78999999999999999999655443

>PRK13684 Ycf48-like protein; Provisional

Probab=94.21  E-value=5  Score=37.72  Aligned_cols=170  Identities=11%  Similarity=0.055  Sum_probs=86.6

Q ss_pred             cEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEE-EEECCCCccccCeEEcCCCCCCCcccc
Q 016552          166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVE-KWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~-~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      +++=+-.-++|+++.... .-.........+..|++.|...        .+. ..|....+    |..+.......    
T Consensus       154 i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~t----W~~~~~~~~~~----  216 (334)
T PRK13684        154 IYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTA----WTPHQRNSSRR----  216 (334)
T ss_pred             EEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCe----EEEeeCCCccc----
Confidence            444444567999875432 2233333333444444444322        111 12344456    99886422111    


Q ss_pred             ceEE-EEECCEEEEEeeeCCeEEEEE-C-CCCceeecccccc-cCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCcee
Q 016552          245 AIDA-VGWKGKLCLVNVKGAEGAVYD-V-VANTWDDMREGMV-RGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWK  319 (387)
Q Consensus       245 ~~~~-~~~~g~lyv~gg~~~~i~~yD-~-~~~~W~~~~~~~~-~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~  319 (387)
                      .... ..-++++++++..+  ...+. . .-.+|+.+..... .......+++. ++.+|+.+. .|.++.-.....+|+
T Consensus       217 l~~i~~~~~g~~~~vg~~G--~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G~v~~S~d~G~tW~  293 (334)
T PRK13684        217 LQSMGFQPDGNLWMLARGG--QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NGTLLVSKDGGKTWE  293 (334)
T ss_pred             ceeeeEcCCCCEEEEecCC--EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC-CCeEEEeCCCCCCCe
Confidence            1222 23467888886644  33342 2 2348997653111 11112233333 567877764 566666566678999


Q ss_pred             Eccccccc-cCceEEEEe-CCeEEEEecCCCeEEEEecc
Q 016552          320 EVVKSDLL-KGARHAAAG-GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       320 ~v~~~~~~-~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~  356 (387)
                      .+...... .....++.. +++++++ |..+.|+.++.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~~  331 (334)
T PRK13684        294 KDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVGS  331 (334)
T ss_pred             ECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecCC
Confidence            97643222 233444544 5667666 666667777765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=94.06  E-value=6  Score=38.13  Aligned_cols=176  Identities=11%  Similarity=0.001  Sum_probs=89.6

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+++-..+..........+....+.+|++....+.      ...+..+|..++.    ...+........  
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~----~~~l~~~~~~~~--  281 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQ----LTRLTNGPGIDT--  281 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC------CccEEEEECCCCC----EEECCCCCCCCC--
Confidence            4689999998877766554432222222122335665543222      2367888998887    776654332111  


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W  318 (387)
                        .....-+|+ |++.....  ..++.+|..++.+..+.... .....+.....+..|++.....  ..|+.||.+++.+
T Consensus       282 --~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       282 --EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             --CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence              111222554 54443332  47888999888877664311 1111122222233444443322  2799999998777


Q ss_pred             eEccccccccCceEEEEeCCeEEEEec-C-C-CeEEEEecc
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCE-N-G-GGIVVVDVK  356 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg-~-~-~~i~~~d~~  356 (387)
                      +.+.......  ......+|+.+++.. . + ..+++++..
T Consensus       359 ~~l~~~~~~~--~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       359 RVLTDTGLDE--SPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEccCCCCCC--CceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            6665422111  113344555444432 2 2 345555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.03  E-value=2.7  Score=39.68  Aligned_cols=193  Identities=13%  Similarity=0.092  Sum_probs=101.8

Q ss_pred             cEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          166 PLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      +..+|..|+.-+.+-+-...-+..+++ ..++.-+|+|+.+.        .+..+|..-+..+ .|+-+..   ++..  
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr--------~i~~wdlDgn~~~-~W~gvr~---~~v~--  358 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR--------TIIMWDLDGNILG-NWEGVRD---PKVH--  358 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC--------cEEEecCCcchhh-ccccccc---ceeE--
Confidence            566676666544432211122222223 23666788887654        5566666544322 2876652   2221  


Q ss_pred             ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccc
Q 016552          245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       245 ~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~  323 (387)
                       ..++..||+-.+.-+.+..+..|+.++..=..+-. ...+  ..+..+ .++++.++.-...++..||.+  .|+.+..
T Consensus       359 -dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~--its~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~k  432 (519)
T KOG0293|consen  359 -DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQP--ITSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRK  432 (519)
T ss_pred             -EEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCc--eeEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHH
Confidence             34556788744333444678888887764332111 0111  122232 366888887777789999998  5666554


Q ss_pred             ccc-ccCce---EEEEeCC-eEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCceeEEEEEccC
Q 016552          324 SDL-LKGAR---HAAAGGG-RVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHIMPR  382 (387)
Q Consensus       324 ~~~-~~~~~---~~~~~~g-~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~~~  382 (387)
                      ... -++.+   .|..-.+ +.++-|.....|++++..++    .=-. ...+.=..-+|+++|.
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg----kll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG----KLLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC----ceeEeecCCcceeeEEecCCC
Confidence            322 22322   2233333 44444445688999988865    2222 2222235567777775

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=93.93  E-value=5.3  Score=37.08  Aligned_cols=146  Identities=10%  Similarity=0.131  Sum_probs=81.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc--ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR--WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +..+.+.||.+.       ..++++..+..|--  .++....  .+..-..++.+.+.|+...        .+.+++..+
T Consensus        75 ~~~l~aTGGgDD-------~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG--------~v~v~~~st  137 (399)
T KOG0296|consen   75 NNNLVATGGGDD-------LAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG--------KVLVFKVST  137 (399)
T ss_pred             CCceEEecCCCc-------eEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc--------cEEEEEccc
Confidence            456777887533       46899998888532  2333322  2233345677777777655        677777777


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~  303 (387)
                      +...  |.....+..-.+-+. |    --+.+.+.|..+..+++|...++.=.++-.+.... ....-.+.+|+..+.+.
T Consensus       138 g~~~--~~~~~e~~dieWl~W-H----p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  138 GGEQ--WKLDQEVEDIEWLKW-H----PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP-CTCGEFIPDGKRILTGY  209 (399)
T ss_pred             CceE--EEeecccCceEEEEe-c----ccccEEEeecCCCcEEEEECCCcceeeEecCCCCC-cccccccCCCceEEEEe
Confidence            6644  665422211101000 1    02345566655577888877765322222211111 11122244577777777


Q ss_pred             CCCeEEEEeCCCC
Q 016552          304 NSCTLSRYDEVMD  316 (387)
Q Consensus       304 ~~~~l~~yd~~~~  316 (387)
                      .++.|.+||+++.
T Consensus       210 ~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  210 DDGTIIVWNPKTG  222 (399)
T ss_pred             cCceEEEEecCCC
Confidence            7899999999987

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.92  E-value=4.1  Score=35.69  Aligned_cols=134  Identities=12%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      .+-.+||....--+--.-......-++...++.=+..||.+.        .+.++|..|++    =...-  .   -...
T Consensus        40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk--------~v~vwDV~TGk----v~Rr~--r---gH~a  102 (307)
T KOG0316|consen   40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK--------AVQVWDVNTGK----VDRRF--R---GHLA  102 (307)
T ss_pred             eEEeecccccceeeeecCCCceeeeccccccccccccCCCCc--------eEEEEEcccCe----eeeec--c---cccc
Confidence            456677776654432111111111123334444455555443        77899999998    11110  0   0001


Q ss_pred             ceEEEEECC--EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          245 AIDAVGWKG--KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       245 ~~~~~~~~g--~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                      ...++.+|.  .+.+-|+.+..+.++|=.++.-+.++. +.....+...+...+...+-|..+|.+..||+..+
T Consensus       103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             eeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-hhhhcCceeEEEecccEEEeeccCCcEEEEEeecc
Confidence            123455554  355666677889999999888887765 44444444445555677777777899999998665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=93.90  E-value=7.1  Score=38.36  Aligned_cols=180  Identities=15%  Similarity=-0.029  Sum_probs=90.4

Q ss_pred             CCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ...+++.|.....-+.+...+.+-.......-+.+|+...-. .     ....++++|..+++    -..+...+.... 
T Consensus       197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~-~-----g~~~L~~~dl~tg~----~~~lt~~~g~~~-  265 (448)
T PRK04792        197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE-N-----RKAEIFVQDIYTQV----REKVTSFPGING-  265 (448)
T ss_pred             ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEec-C-----CCcEEEEEECCCCC----eEEecCCCCCcC-
Confidence            356777777655444443222211111122223345433211 1     12468889998887    666654432211 


Q ss_pred             ccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCc
Q 016552          243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDD  317 (387)
Q Consensus       243 ~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~  317 (387)
                         .....-||+ |++.....  ..++.+|+++++.+.+..... ....+.-...+..|++.....  ..++.+|.++++
T Consensus       266 ---~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        266 ---APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             ---CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence               112223554 54443322  468899999988877654211 111222222344566554322  369999999998


Q ss_pred             eeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552          318 WKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~  358 (387)
                      ++.+......... ....-+|+ |++.+..  ...|+++|+.++
T Consensus       342 ~~~Lt~~g~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        342 VSRLTFEGEQNLG-GSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             EEEEecCCCCCcC-eeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            8877522111111 12344544 4444332  346788888754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=93.89  E-value=3.6  Score=39.77  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=63.8

Q ss_pred             CeEEEEECCCC----ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCC
Q 016552          263 AEGAVYDVVAN----TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG  338 (387)
Q Consensus       263 ~~i~~yD~~~~----~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g  338 (387)
                      ..+..||....    .|.+.-..+.   .+.+....+..|++--|-+.+|..||.....-..--.-. ..-......-+|
T Consensus       187 G~VtlwDv~g~sp~~~~~~~HsAP~---~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G  262 (673)
T KOG4378|consen  187 GAVTLWDVQGMSPIFHASEAHSAPC---RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-HPLSTVAFSECG  262 (673)
T ss_pred             CeEEEEeccCCCcccchhhhccCCc---CcceecCCccceEEEecccceEEEeecccccccceeeec-CCcceeeecCCc
Confidence            46777887654    3544432111   123333456677776667889999998755322211100 111222334467


Q ss_pred             eEEEEecCCCeEEEEeccCCCCCCceEE--eCCCCceeEEEEEccC
Q 016552          339 RVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGFEALSVHIMPR  382 (387)
Q Consensus       339 ~i~v~gg~~~~i~~~d~~~~~~~~~W~~--~~p~~~~~~~~~~~~~  382 (387)
                      .++++|...+.++.||+...+++=  .+  ........+++++.|.
T Consensus       263 ~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~vafq~s~t  306 (673)
T KOG4378|consen  263 TYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVAFQPSPT  306 (673)
T ss_pred             eEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEEeeecce
Confidence            888887778999999999653331  11  1122356667777663

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=93.76  E-value=4.2  Score=36.61  Aligned_cols=79  Identities=14%  Similarity=0.040  Sum_probs=47.7

Q ss_pred             CCCCCCCCcceeEEEe--CC--EEEEEecCCCCCCC-----------CCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          179 GPELVTPRRWCAAGCS--RG--AVYVASGIGSQFSS-----------DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       179 l~~~p~~r~~~~~~~~--~~--~iyv~GG~~~~~~~-----------~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      +...|.+|+.|+..++  .|  ...++||....-..           +....|...|++-+-    .+.- .+|.-.-..
T Consensus        81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC----~tah-~lpEl~dG~  155 (337)
T PF03089_consen   81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGC----CTAH-TLPELQDGQ  155 (337)
T ss_pred             cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccc----cccc-cchhhcCCe
Confidence            4678999998887665  33  35778887432100           112345566776665    4322 233332333


Q ss_pred             cceEEEEECCEEEEEeeeC
Q 016552          244 EAIDAVGWKGKLCLVNVKG  262 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~  262 (387)
                      ..|.+.+-++.+|++||+.
T Consensus       156 SFHvslar~D~VYilGGHs  174 (337)
T PF03089_consen  156 SFHVSLARNDCVYILGGHS  174 (337)
T ss_pred             EEEEEEecCceEEEEccEE
Confidence            3477888899999999964

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=93.60  E-value=4.9  Score=35.52  Aligned_cols=171  Identities=11%  Similarity=0.054  Sum_probs=87.1

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .+-.||..++.=..+...-.++...+++  -.+|+-...||.+.        ++.++|...-.    -...-..+.+   
T Consensus        62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~----~qR~~~~~sp---  126 (311)
T KOG0315|consen   62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLS----CQRNYQHNSP---  126 (311)
T ss_pred             eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcc----cchhccCCCC---
Confidence            5678888777533222222333333333  34678777777755        66777766544    2222222211   


Q ss_pred             ccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccC-CCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          243 REAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRG-WRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       243 ~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~-~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                         ...+++   .+.|++- .....|.+.|+.++.......  |+. ....+++ ..+|.+.+-..+.|.+++|+.-++.
T Consensus       127 ---Vn~vvlhpnQteLis~-dqsg~irvWDl~~~~c~~~li--Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~  200 (311)
T KOG0315|consen  127 ---VNTVVLHPNQTELISG-DQSGNIRVWDLGENSCTHELI--PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ  200 (311)
T ss_pred             ---cceEEecCCcceEEee-cCCCcEEEEEccCCccccccC--CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence               223333   2344332 223689999999997654432  222 1222333 3456655555556889999986632


Q ss_pred             ee-Eccccccc--cC---ceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552          318 WK-EVVKSDLL--KG---ARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       318 W~-~v~~~~~~--~~---~~~~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      -. ++.+....  ..   .-+...-+++.+...+....+.+++.+
T Consensus       201 ~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  201 TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence            11 11111111  11   133344566666666666666666555

>PRK13684 Ycf48-like protein; Provisional

Probab=93.60  E-value=6.5  Score=36.96  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=63.4

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEE-eCCCCceeEccccccccCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRY-DEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~y-d~~~~~W~~v~~~~~~~~~  330 (387)
                      ++.+|+.+..+ .++.=+-.-.+|+.+.... .+ ....+....+..|++.+..|.++.- |....+|+.+.......-.
T Consensus       142 ~~~~~~~g~~G-~i~~S~DgG~tW~~~~~~~-~g-~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~  218 (334)
T PRK13684        142 PGTAEMATNVG-AIYRTTDGGKNWEALVEDA-AG-VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ  218 (334)
T ss_pred             CCcceeeeccc-eEEEECCCCCCceeCcCCC-cc-eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce
Confidence            34566665443 3444333456999886532 22 1122333333345554456666654 5566789987553222212


Q ss_pred             eEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCC---CCceeEEEEEcc
Q 016552          331 RHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTP---LGFEALSVHIMP  381 (387)
Q Consensus       331 ~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p---~~~~~~~~~~~~  381 (387)
                      .....-+++++++|.+| .+ ++.  +...+..|+. ..|   ..+.+..+++.|
T Consensus       219 ~i~~~~~g~~~~vg~~G-~~-~~~--s~d~G~sW~~~~~~~~~~~~~l~~v~~~~  269 (334)
T PRK13684        219 SMGFQPDGNLWMLARGG-QI-RFN--DPDDLESWSKPIIPEITNGYGYLDLAYRT  269 (334)
T ss_pred             eeeEcCCCCEEEEecCC-EE-EEc--cCCCCCccccccCCccccccceeeEEEcC
Confidence            22233468888886544 23 232  1234468995 555   335566666554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.57  E-value=7.7  Score=37.73  Aligned_cols=135  Identities=16%  Similarity=0.093  Sum_probs=72.8

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEee-eC-CeEEEEECCCCceeecccccccCCCCcE
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..++++|..+++    -..+...+....    .....-||+ |++... .+ ..++++|+.++..+.+.... .....+.
T Consensus       223 ~~l~~~~l~~g~----~~~l~~~~g~~~----~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~  293 (430)
T PRK00178        223 PRIFVQNLDTGR----REQITNFEGLNG----APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPF  293 (430)
T ss_pred             CEEEEEECCCCC----EEEccCCCCCcC----CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeE
Confidence            478899999888    776654432110    112223554 443322 22 57899999999887665321 1111222


Q ss_pred             EEEeCCeEEEEeCCC--CeEEEEeCCCCceeEccccccccCceEEEEeCC-eEEEEecC--CCeEEEEeccCC
Q 016552          291 AAMDEEVLYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g-~i~v~gg~--~~~i~~~d~~~~  358 (387)
                      ....+.+|++.....  ..|+.+|.+++.++.+....... .......+| .|++....  ...++++|..++
T Consensus       294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN-ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            222345666665433  36999999988887765322111 111223344 45444332  246888888754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.51  E-value=9.9  Score=38.83  Aligned_cols=154  Identities=12%  Similarity=0.066  Sum_probs=84.6

Q ss_pred             CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCe
Q 016552          185 PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAE  264 (387)
Q Consensus       185 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~  264 (387)
                      .|..+....-+|.+.+.|+.+.        .|.+||...+-    -...-.-+.  .. -........|+..+...-+..
T Consensus       351 ~~i~~l~YSpDgq~iaTG~eDg--------KVKvWn~~Sgf----C~vTFteHt--s~-Vt~v~f~~~g~~llssSLDGt  415 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAEDG--------KVKVWNTQSGF----CFVTFTEHT--SG-VTAVQFTARGNVLLSSSLDGT  415 (893)
T ss_pred             cceeeEEECCCCcEEEeccCCC--------cEEEEeccCce----EEEEeccCC--Cc-eEEEEEEecCCEEEEeecCCe
Confidence            3444444455788888888765        77888777654    222211111  11 001122335555444443457


Q ss_pred             EEEEECCCCc-eeecccccccCCCCcEEEEe-CCeEEEEeCC-CCeEEEEeCCCCceeEccccccccCceE--EEEeCCe
Q 016552          265 GAVYDVVANT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDEN-SCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGR  339 (387)
Q Consensus       265 i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~-~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~  339 (387)
                      +-++|+.... .++...  |.+....++++. .|.|.+.|.. .-.|++|+.+|+.-..+-.  ..-++..  +....+.
T Consensus       416 VRAwDlkRYrNfRTft~--P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  416 VRAWDLKRYRNFRTFTS--PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGS  491 (893)
T ss_pred             EEeeeecccceeeeecC--CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccC
Confidence            8888887552 444332  333334444443 2677777653 3369999999985544332  2222222  3455667


Q ss_pred             EEEEecCCCeEEEEeccC
Q 016552          340 VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       340 i~v~gg~~~~i~~~d~~~  357 (387)
                      ++.-|.....|-+||+-.
T Consensus       492 ~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             eEEeccccceEEEEEeec
Confidence            777766677788888874

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.49  E-value=3.6  Score=36.89  Aligned_cols=158  Identities=13%  Similarity=0.046  Sum_probs=87.2

Q ss_pred             ceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCcee---eCCCCCCC---------CcceeEEEeCCEEEEEecCCC
Q 016552          139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWT---FGPELVTP---------RRWCAAGCSRGAVYVASGIGS  206 (387)
Q Consensus       139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~---~l~~~p~~---------r~~~~~~~~~~~iyv~GG~~~  206 (387)
                      |-+-++.+|.+|.--.       ..+.+..||..+++-.   .||.....         -...-.++.++-|+|+=....
T Consensus        71 GtG~vVYngslYY~~~-------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~  143 (250)
T PF02191_consen   71 GTGHVVYNGSLYYNKY-------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED  143 (250)
T ss_pred             cCCeEEECCcEEEEec-------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCC
Confidence            4556667777777532       3467999999998654   45432211         123445666677877744433


Q ss_pred             CCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 016552          207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM  282 (387)
Q Consensus       207 ~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~  282 (387)
                      .. +.  -.+-..|+.+=...-.|..-  .+....    ..+.++-|.||++....    .-..+||+.+++=..+.-.+
T Consensus       144 ~~-g~--ivvskld~~tL~v~~tw~T~--~~k~~~----~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f  214 (250)
T PF02191_consen  144 NN-GN--IVVSKLDPETLSVEQTWNTS--YPKRSA----GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPF  214 (250)
T ss_pred             CC-Cc--EEEEeeCcccCceEEEEEec--cCchhh----cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeee
Confidence            11 10  12233344322211127743  232222    33566679999997654    34578999988655444323


Q ss_pred             ccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 016552          283 VRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEV  314 (387)
Q Consensus       283 ~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~  314 (387)
                      +......+..   -.+.+||+.+  +|.+..|+..
T Consensus       215 ~~~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v~  247 (250)
T PF02191_consen  215 PNPYGNISMLSYNPRDKKLYAWD--NGYQVTYDVR  247 (250)
T ss_pred             ccccCceEeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence            3332233333   2367899885  6778888764

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=93.40  E-value=5.3  Score=35.31  Aligned_cols=131  Identities=11%  Similarity=0.072  Sum_probs=75.2

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccc--cc--eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcE
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSR--EA--IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~--~~--~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      .+..||..++.         +.|...+..  .+  ..+..++|+....|+.+..+-+.|+..-.-...-   ........
T Consensus        62 hvRlyD~~S~n---------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~---~~~spVn~  129 (311)
T KOG0315|consen   62 HVRLYDLNSNN---------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY---QHNSPVNT  129 (311)
T ss_pred             eeEEEEccCCC---------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc---cCCCCcce
Confidence            57889998887         222221211  11  2234568997778887778888888773322211   11111234


Q ss_pred             EEEeC--CeEEEEeCCCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          291 AAMDE--EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~--~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.+-  +.|++ +..+|.|++||..++.-.....+.... -....+..+|+.++.+-+.+..++++.-+.
T Consensus       130 vvlhpnQteLis-~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~  199 (311)
T KOG0315|consen  130 VVLHPNQTELIS-GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH  199 (311)
T ss_pred             EEecCCcceEEe-ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence            44432  34443 335789999999999766544332222 123334556776666556678889888754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=93.21  E-value=8.9  Score=37.42  Aligned_cols=180  Identities=13%  Similarity=0.016  Sum_probs=89.2

Q ss_pred             CCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ...+++.|.....=+.+..-..+-..+....-+.+|+...-. .     ....++++|+.+++    ...+...+.... 
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~-~-----g~~~i~~~dl~~g~----~~~l~~~~g~~~-  249 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYA-N-----GRPRVYLLDLETGQ----RELVGNFPGMTF-  249 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEec-C-----CCCEEEEEECCCCc----EEEeecCCCccc-
Confidence            467888887655444443221111111111223345333211 1     12478999999988    777765443211 


Q ss_pred             ccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCc
Q 016552          243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDD  317 (387)
Q Consensus       243 ~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~  317 (387)
                         .....-||+ |++.....  ..++.+|++++.-..+..... ....+...-.+.+|++.....  ..|+.+|.++..
T Consensus       250 ---~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        250 ---APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             ---CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence               112233564 44333222  568888998887766643211 111222223344565544322  369999988877


Q ss_pred             eeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552          318 WKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~  358 (387)
                      .+.+.......... ...-+|+ |++....  ...++++|..++
T Consensus       326 ~~~lt~~~~~~~~~-~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        326 PRRISFGGGRYSTP-VWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             eEEeecCCCcccCe-EECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            76665322111112 2333444 4444322  256888887543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.11  E-value=8.7  Score=37.02  Aligned_cols=119  Identities=14%  Similarity=0.149  Sum_probs=63.2

Q ss_pred             EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-----ceeecccccccCCCCcEEE-
Q 016552          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-----TWDDMREGMVRGWRGPVAA-  292 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-----~W~~~~~~~~~~~~~~~~~-  292 (387)
                      .|.....    |..+..-......   ......+|.+++++..+ .+..-+-...     +|.+++.. .....-..++ 
T Consensus       265 ~d~G~~~----W~~~~~~~~~~l~---~v~~~~dg~l~l~g~~G-~l~~S~d~G~~~~~~~f~~~~~~-~~~~~l~~v~~  335 (398)
T PLN00033        265 WEPGQPY----WQPHNRASARRIQ---NMGWRADGGLWLLTRGG-GLYVSKGTGLTEEDFDFEEADIK-SRGFGILDVGY  335 (398)
T ss_pred             cCCCCcc----eEEecCCCcccee---eeeEcCCCCEEEEeCCc-eEEEecCCCCcccccceeecccC-CCCcceEEEEE
Confidence            4455555    8887733322211   22234578888877554 3333333333     45554431 1111112222 


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCc-eEEE-EeCCeEEEEecCC
Q 016552          293 MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGA-RHAA-AGGGRVCAVCENG  347 (387)
Q Consensus       293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~-~~~~-~~~g~i~v~gg~~  347 (387)
                      ..++.+++.|. .|.++.-....++|+.+......... +.+. .-+++.|++|.+|
T Consensus       336 ~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G  391 (398)
T PLN00033        336 RSKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDG  391 (398)
T ss_pred             cCCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCc
Confidence            34667877764 67788888888999997643333332 3344 3447899885433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.01  E-value=3.4  Score=38.48  Aligned_cols=63  Identities=16%  Similarity=0.142  Sum_probs=37.2

Q ss_pred             eCCeEEEEeCC---------CCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEE--EecCCCeEEEEeccCC
Q 016552          294 DEEVLYGIDEN---------SCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCA--VCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~~~---------~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v--~gg~~~~i~~~d~~~~  358 (387)
                      ..++||++-..         ..+||+||+++.+  .+...+... .....+.-+++-++  +...+..+++||..++
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            36799997421         1259999999984  344333211 11223445666444  4456688999999976

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=92.99  E-value=6.8  Score=35.42  Aligned_cols=176  Identities=10%  Similarity=0.056  Sum_probs=85.5

Q ss_pred             cEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccc
Q 016552          166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA  245 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~  245 (387)
                      +.++|..|-.=...-|||..-....+-.-.++....||.++        ..-+|+..+..... =..+...-..... ..
T Consensus        79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN--------~Csiy~ls~~d~~g-~~~v~r~l~gHtg-yl  148 (343)
T KOG0286|consen   79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN--------KCSIYPLSTRDAEG-NVRVSRELAGHTG-YL  148 (343)
T ss_pred             EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--------eeEEEecccccccc-cceeeeeecCccc-ee
Confidence            44455443222222234433322223333567778888866        56789888653100 1111111111110 00


Q ss_pred             eEEEEEC-CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552          246 IDAVGWK-GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       246 ~~~~~~~-g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~~~~~ly~~~~~~~~l~~yd~~~~~W~~  320 (387)
                      .++-.++ +.|.--.|. ...-..|.++++=...-.    +..+..++    -.+++.|+-|+.+..-+.||.....  -
T Consensus       149 ScC~f~dD~~ilT~SGD-~TCalWDie~g~~~~~f~----GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--c  221 (343)
T KOG0286|consen  149 SCCRFLDDNHILTGSGD-MTCALWDIETGQQTQVFH----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--C  221 (343)
T ss_pred             EEEEEcCCCceEecCCC-ceEEEEEcccceEEEEec----CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--e
Confidence            1122333 333322232 466778888876433221    11122111    2267889988888888999987762  3


Q ss_pred             ccccccccC--ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          321 VVKSDLLKG--ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       321 v~~~~~~~~--~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++..+....  +.....-+|.-+..|......-+||+...
T Consensus       222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence            333333222  23333446667777666666666776643

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.98  E-value=0.9  Score=36.09  Aligned_cols=70  Identities=13%  Similarity=0.083  Sum_probs=51.1

Q ss_pred             eCCeEEEEeCC----CCeEEEEeCCCCceeEcccc--c-cccCceEEEEeCCeEEEEecCC------CeEEEEeccCCCC
Q 016552          294 DEEVLYGIDEN----SCTLSRYDEVMDDWKEVVKS--D-LLKGARHAAAGGGRVCAVCENG------GGIVVVDVKAAAA  360 (387)
Q Consensus       294 ~~~~ly~~~~~----~~~l~~yd~~~~~W~~v~~~--~-~~~~~~~~~~~~g~i~v~gg~~------~~i~~~d~~~~~~  360 (387)
                      .+|-||.+...    ...|.+||.++.+|+.+..+  + .......++.++|+|.++....      -++++++-..+  
T Consensus         4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k--   81 (129)
T PF08268_consen    4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK--   81 (129)
T ss_pred             ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--
Confidence            46788888653    34699999999999988875  2 2345688899999999986532      47888864433  


Q ss_pred             CCceEE
Q 016552          361 PTIFVV  366 (387)
Q Consensus       361 ~~~W~~  366 (387)
                       ++|..
T Consensus        82 -~~Wsk   86 (129)
T PF08268_consen   82 -QEWSK   86 (129)
T ss_pred             -ceEEE
Confidence             47883

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=92.75  E-value=9.8  Score=36.65  Aligned_cols=135  Identities=15%  Similarity=0.086  Sum_probs=72.8

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcE
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..+.++|..++.    -..+...+....    .....-||+ |++.....  ..++.+|+.++....+.... .....+.
T Consensus       214 ~~i~v~d~~~g~----~~~~~~~~~~~~----~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~  284 (417)
T TIGR02800       214 PEIYVQDLATGQ----REKVASFPGMNG----APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPS  284 (417)
T ss_pred             cEEEEEECCCCC----EEEeecCCCCcc----ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEE
Confidence            478899999887    665554332211    112233554 55443222  56899999988776664311 1111122


Q ss_pred             EEEeCCeEEEEeCCC--CeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC---CeEEEEeccCC
Q 016552          291 AAMDEEVLYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG---GGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~---~~i~~~d~~~~  358 (387)
                      ....+.+|++.....  ..|+.+|.++..++.+........ ......+|+.++++...   ..++++|+.+.
T Consensus       285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~-~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA-SPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc-CeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            122344565554332  369999999888776653221111 11233455555554432   47889998864

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=92.69  E-value=2.5  Score=38.01  Aligned_cols=71  Identities=15%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             cccceEEEEE--CCE--EEEEecccCC--C------CC----CCCccEEEeccCCcee--eCCCCCCCCcceeEEEeCCE
Q 016552          136 RNLPVQLVSL--SGK--LILLAATTHN--F------NP----ALTRPLIFDPICRTWT--FGPELVTPRRWCAAGCSRGA  197 (387)
Q Consensus       136 ~~~~~~~~~~--~~~--l~v~GG~~~~--~------~~----~~~~~~vyd~~t~~W~--~l~~~p~~r~~~~~~~~~~~  197 (387)
                      +|+||.+.++  .|+  .++|||...-  .      +.    ..-.|+..|+.-+-..  .+|.+...-++|.+.+-++.
T Consensus        87 aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~  166 (337)
T PF03089_consen   87 ARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDC  166 (337)
T ss_pred             ccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCce
Confidence            3888876654  333  6778886531  0      11    1234566787766544  47777778888988899999


Q ss_pred             EEEEecCCC
Q 016552          198 VYVASGIGS  206 (387)
Q Consensus       198 iyv~GG~~~  206 (387)
                      ||++||...
T Consensus       167 VYilGGHsl  175 (337)
T PF03089_consen  167 VYILGGHSL  175 (337)
T ss_pred             EEEEccEEc
Confidence            999999855

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.50  E-value=4.6  Score=36.61  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=67.7

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCe---EEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV---LYGIDENSCTLSRYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~---ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~  328 (387)
                      +|...+.++.+..+..+|+.+++=..+...-. +  ..++-..++.   +.+.|..+.+|.-||+...  ..+..+..+ 
T Consensus        83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~-p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LP-  156 (347)
T KOG0647|consen   83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA-P--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLP-  156 (347)
T ss_pred             CCceEEeeccCCceEEEEccCCCeeeeeeccc-c--eeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeecc-
Confidence            45555566666789999999998777653211 1  1122223333   3344555677888888643  222222222 


Q ss_pred             CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCceeEEEEEc
Q 016552          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVHIM  380 (387)
Q Consensus       329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~  380 (387)
                      ...-++-+...+.+++-.+..|.+|++.+.  +.+.+. ..|..|+..+++.-
T Consensus       157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~--~te~k~~~SpLk~Q~R~va~f  207 (347)
T KOG0647|consen  157 ERVYAADVLYPMAVVATAERHIAVYNLENP--PTEFKRIESPLKWQTRCVACF  207 (347)
T ss_pred             ceeeehhccCceeEEEecCCcEEEEEcCCC--cchhhhhcCcccceeeEEEEE
Confidence            222233344456666666777888888633  234443 55666666666553

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=92.44  E-value=5.7  Score=36.52  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=58.1

Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecC--------------------CCe
Q 016552          290 VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN--------------------GGG  349 (387)
Q Consensus       290 ~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~--------------------~~~  349 (387)
                      +.-.++|+||+.+...+++..+|++++..+.+...|......  .-. |.+.++|-.                    .-+
T Consensus       207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL--~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG  283 (335)
T TIGR03032       207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGL--AFA-GDFAFVGLSKLRESRVFGGLPIEERLDALGCG  283 (335)
T ss_pred             CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccc--cee-CCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence            344678999999988899999999999999998777544322  222 677777631                    125


Q ss_pred             EEEEeccCCCCCCceEE-eCCCCceeEEEEEccCC
Q 016552          350 IVVVDVKAAAAPTIFVV-DTPLGFEALSVHIMPRM  383 (387)
Q Consensus       350 i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~~~~~~  383 (387)
                      ++++|+.++.-. .|-. .-.- -|+-.|+++|-+
T Consensus       284 v~vidl~tG~vv-~~l~feg~v-~EifdV~vLPg~  316 (335)
T TIGR03032       284 VAVIDLNSGDVV-HWLRFEGVI-EEIYDVAVLPGV  316 (335)
T ss_pred             EEEEECCCCCEE-EEEEeCCce-eEEEEEEEecCC
Confidence            778888765111 1332 2222 267777777765

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=92.39  E-value=3.5  Score=36.28  Aligned_cols=123  Identities=14%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             eEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE--eCCeEEEEeCC
Q 016552          230 WEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDEN  304 (387)
Q Consensus       230 W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~~  304 (387)
                      |+...|+...........+..+   .|.+++.||.+ .++..|+++++-+..-.+..+-  .++++.  .++++ +-|++
T Consensus       101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtDY--vH~vv~R~~~~qi-lsG~E  176 (325)
T KOG0649|consen  101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYRGHTDY--VHSVVGRNANGQI-LSGAE  176 (325)
T ss_pred             hhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEcCCcce--eeeeeecccCcce-eecCC
Confidence            8877766543211111223333   47788888765 7888999999876543322211  233443  23343 44567


Q ss_pred             CCeEEEEeCCCCceeEcccc---c-ccc---Cc-eEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          305 SCTLSRYDEVMDDWKEVVKS---D-LLK---GA-RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       305 ~~~l~~yd~~~~~W~~v~~~---~-~~~---~~-~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +|.+.+||.++.+=..+-..   | ..|   +. ..+.+. +.=+++.|+|..+.++....
T Consensus       177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-~edWlvCGgGp~lslwhLrs  236 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-NEDWLVCGGGPKLSLWHLRS  236 (325)
T ss_pred             CccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-cCceEEecCCCceeEEeccC
Confidence            89999999999876654332   1 122   12 223333 34455556665565555543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=92.30  E-value=12  Score=36.54  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=71.9

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeee-C-CeEEEEECCCCceeecccccccCCCCcE
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVK-G-AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~-~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..+.++|..+++    -..+...+....    .....-||+ |++.... + ..++.+|+.++.-+.+..... ....+.
T Consensus       228 ~~l~~~dl~~g~----~~~l~~~~g~~~----~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~  298 (433)
T PRK04922        228 SAIYVQDLATGQ----RELVASFRGING----APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG-IDTEPT  298 (433)
T ss_pred             cEEEEEECCCCC----EEEeccCCCCcc----CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC-CccceE
Confidence            468889998888    776665442211    112233554 5443222 2 479999999887665543211 111222


Q ss_pred             EEEeCCeEEEEeCCCC--eEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552          291 AAMDEEVLYGIDENSC--TLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~  358 (387)
                      ..-.+..|++.....+  .++.+|.+++..+.+.......... ....+|+ |++..+.  ...++++|..++
T Consensus       299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~-~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA-SVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE-EECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            2223445655543333  5899999888877765322111122 2333444 5444332  246888888754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.18  E-value=7.6  Score=34.06  Aligned_cols=197  Identities=10%  Similarity=0.051  Sum_probs=101.5

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeC--CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      +.+.+||..|++--+-  +...-...-++.+|  ..+.+-|+.+.        ++.++|-..+.    -+.+.-+-..  
T Consensus        81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD~--------s~r~wDCRS~s----~ePiQildea--  144 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFDS--------SVRLWDCRSRS----FEPIQILDEA--  144 (307)
T ss_pred             ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEeccccc--------eeEEEEcccCC----CCccchhhhh--
Confidence            4689999999865431  11111111223333  35666666544        77889998888    6655544332  


Q ss_pred             cccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552          242 SREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       242 ~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~  320 (387)
                       .+...++.+.+...+.|..+..+-.||...++-..--  +..+  ..++.+ .++...+.+.-++.+...|-++++--.
T Consensus       145 -~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~p--it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~  219 (307)
T KOG0316|consen  145 -KDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHP--ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK  219 (307)
T ss_pred             -cCceeEEEecccEEEeeccCCcEEEEEeecceeehhh--cCCc--ceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence             3446677777877777766678999998877643211  2222  122222 233444444345567778877764322


Q ss_pred             cc-ccccccCceEEEEeCCeEEEEec-CCCeEEEEeccCCCCCCceEEeCCCCceeEEEEEccCC
Q 016552          321 VV-KSDLLKGARHAAAGGGRVCAVCE-NGGGIVVVDVKAAAAPTIFVVDTPLGFEALSVHIMPRM  383 (387)
Q Consensus       321 v~-~~~~~~~~~~~~~~~g~i~v~gg-~~~~i~~~d~~~~~~~~~W~~~~p~~~~~~~~~~~~~~  383 (387)
                      .- .........-+...+..-.|++| ..+.+++||.....  +.=....+..-....+.+-|+|
T Consensus       220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCceeEEeeecccCc
Confidence            11 11111111222223333445544 46788999988541  0011133333344555555555

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.17  E-value=9.2  Score=40.19  Aligned_cols=120  Identities=15%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC-c----cccc---------------eEE
Q 016552          189 CAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-F----SREA---------------IDA  248 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~-~----~~~~---------------~~~  248 (387)
                      ....+++++||+...         .+.+.++|..|++..  |+.-+..+... .    +|..               ...
T Consensus       188 ~TPlvvgg~lYv~t~---------~~~V~ALDa~TGk~l--W~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p  256 (764)
T TIGR03074       188 ATPLKVGDTLYLCTP---------HNKVIALDAATGKEK--WKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAP  256 (764)
T ss_pred             cCCEEECCEEEEECC---------CCeEEEEECCCCcEE--EEEcCCCCcccccccccccceEEecCCcccccccccccc
Confidence            445678999999743         236788899888866  88665443211 0    0000               001


Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCCc--eeecc-------ccc---ccCC--CCcEEEEeCCeEEEEeC---------CC
Q 016552          249 VGWKGKLCLVNVKGAEGAVYDVVANT--WDDMR-------EGM---VRGW--RGPVAAMDEEVLYGIDE---------NS  305 (387)
Q Consensus       249 ~~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~-------~~~---~~~~--~~~~~~~~~~~ly~~~~---------~~  305 (387)
                      +.++++||+.... ..+.++|.++++  |..-.       ..+   +.+.  ...+.++.++.+|+-+.         ..
T Consensus       257 ~~~~~rV~~~T~D-g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~  335 (764)
T TIGR03074       257 ADCARRIILPTSD-ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPS  335 (764)
T ss_pred             cccCCEEEEecCC-CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCC
Confidence            2355677765443 478888888774  64211       111   1111  12334556777766321         14


Q ss_pred             CeEEEEeCCCC--ceeE
Q 016552          306 CTLSRYDEVMD--DWKE  320 (387)
Q Consensus       306 ~~l~~yd~~~~--~W~~  320 (387)
                      |.|.+||.+++  .|+-
T Consensus       336 G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       336 GVIRAFDVNTGALVWAW  352 (764)
T ss_pred             cEEEEEECCCCcEeeEE
Confidence            67999999887  4664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=91.68  E-value=13  Score=35.69  Aligned_cols=198  Identities=13%  Similarity=0.024  Sum_probs=94.5

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcc-eeEEEeCCEEEEEecCCCCCCCCCcceEEE
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGCSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      .+.+..+...|++||.-.      ..+|++...|+.--..- +...+.. +-....||+.++.||.+.        .|.+
T Consensus        85 ~al~s~n~G~~l~ag~i~------g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg--------~V~v  149 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTIS------GNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDG--------AVLV  149 (476)
T ss_pred             eeeecCCCceEEEeeccc------CcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCc--------cEEE
Confidence            345556667788877322      35788888776532211 1112221 112234678888888765        3444


Q ss_pred             EECCCCccccCeEEcCCCCCCCccccceE-------EEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE
Q 016552          219 WDLMNGEKNSRWEKTGELKDGRFSREAID-------AVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~-------~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      |+..+---.  -..-.+.|...+..+...       ....+.++|-.+-. ..+-+||+..+.--.--. .|.  .-.++
T Consensus       150 W~l~~lv~a--~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LLlti~-fp~--si~av  223 (476)
T KOG0646|consen  150 WLLTDLVSA--DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLLLTIT-FPS--SIKAV  223 (476)
T ss_pred             EEEEeeccc--ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC-ceEEEEEeccceeeEEEe-cCC--cceeE
Confidence            322110000  000011111112111100       11134567655433 578889988874321111 121  12233


Q ss_pred             EEe-CCeEEEEeCCCCeEEEEeCCCCceeEc--------------cccccccC----ceEEEEeCCeEEEEecCCCeEEE
Q 016552          292 AMD-EEVLYGIDENSCTLSRYDEVMDDWKEV--------------VKSDLLKG----ARHAAAGGGRVCAVCENGGGIVV  352 (387)
Q Consensus       292 ~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v--------------~~~~~~~~----~~~~~~~~g~i~v~gg~~~~i~~  352 (387)
                      ++. .++.+.+|.+.|.++..+..+-.=...              ........    .+-.+..+|.+++.|+..+.+-+
T Consensus       224 ~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  224 ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV  303 (476)
T ss_pred             EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence            332 345555666667777655432110000              00111111    23345678999999888899999


Q ss_pred             EeccCC
Q 016552          353 VDVKAA  358 (387)
Q Consensus       353 ~d~~~~  358 (387)
                      +|+...
T Consensus       304 Wdi~S~  309 (476)
T KOG0646|consen  304 WDIYSK  309 (476)
T ss_pred             EecchH
Confidence            999865

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=91.53  E-value=11  Score=34.38  Aligned_cols=130  Identities=12%  Similarity=0.107  Sum_probs=65.1

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      .+-.||..++.-+.  .+........++..+..=.+.||.+.        .+..||..++.    =..+..-..+...  
T Consensus        36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~----~~~igth~~~i~c--   99 (323)
T KOG1036|consen   36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLDG--------QVRRYDLNTGN----EDQIGTHDEGIRC--   99 (323)
T ss_pred             cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccCc--------eEEEEEecCCc----ceeeccCCCceEE--
Confidence            46777777762221  11111112234444555556676654        78899999988    4444422222100  


Q ss_pred             ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       245 ~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                       ..-....|. .+.|+.+..+...|+....   .......+-...++.+.+++ .++|..+.++..||..+.
T Consensus       100 -i~~~~~~~~-vIsgsWD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~-LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen  100 -IEYSYEVGC-VISGSWDKTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNR-LVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             -EEeeccCCe-EEEcccCccEEEEeccccc---cccccccCceEEEEeccCCE-EEEeecCceEEEEEcccc
Confidence             111111333 3566777788888887611   11101111112233344544 455555678999998654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.44  E-value=17  Score=36.57  Aligned_cols=142  Identities=14%  Similarity=0.178  Sum_probs=82.2

Q ss_pred             EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECC
Q 016552          193 CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       193 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~  271 (387)
                      ..++.+.|.|..+.        .+-+||+.+.+    --..-.-...+     ..+..+++ ..++-|..+..|.+.|+.
T Consensus       338 ~~~~~~lvsgs~d~--------~v~VW~~~~~~----cl~sl~gH~~~-----V~sl~~~~~~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  338 QLDEPLLVSGSYDG--------TVKVWDPRTGK----CLKSLSGHTGR-----VYSLIVDSENRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             EecCCEEEEEecCc--------eEEEEEhhhce----eeeeecCCcce-----EEEEEecCcceEEeeeeccceEeecCC
Confidence            44566777766544        78899998776    22211111111     23456677 555566666778999988


Q ss_pred             CCceeecccccccCCCCcEEE----EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC
Q 016552          272 ANTWDDMREGMVRGWRGPVAA----MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG  347 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~----~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~  347 (387)
                      +.. . .    -....++...    ...+++++-+..++.|..||.+++.=.++..-+ ......++..+...++..+..
T Consensus       401 ~~~-~-c----~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~~  473 (537)
T KOG0274|consen  401 TKR-K-C----IHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSDD  473 (537)
T ss_pred             chh-h-h----hhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEecC
Confidence            874 1 1    1111122222    223455555556788999999888655544333 333444444444666776777


Q ss_pred             CeEEEEeccCC
Q 016552          348 GGIVVVDVKAA  358 (387)
Q Consensus       348 ~~i~~~d~~~~  358 (387)
                      ..+.++|+.+.
T Consensus       474 ~~~~l~dl~~~  484 (537)
T KOG0274|consen  474 GSVKLWDLRSG  484 (537)
T ss_pred             CeeEEEecccC
Confidence            77888888865

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=91.08  E-value=6.5  Score=38.11  Aligned_cols=93  Identities=13%  Similarity=0.042  Sum_probs=57.2

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-  293 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-  293 (387)
                      .|..||.....+...|.+....|..-     .+..-.+..|++--|++..|..||.....=...   +....+-.++++ 
T Consensus       188 ~VtlwDv~g~sp~~~~~~~HsAP~~g-----icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~---l~y~~Plstvaf~  259 (673)
T KOG4378|consen  188 AVTLWDVQGMSPIFHASEAHSAPCRG-----ICFSPSNEALLVSVGYDKKINIYDIRSQASTDR---LTYSHPLSTVAFS  259 (673)
T ss_pred             eEEEEeccCCCcccchhhhccCCcCc-----ceecCCccceEEEecccceEEEeecccccccce---eeecCCcceeeec
Confidence            56667776665555577776655322     334455778888888888999999886542211   111112234443 


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCC
Q 016552          294 DEEVLYGIDENSCTLSRYDEVM  315 (387)
Q Consensus       294 ~~~~ly~~~~~~~~l~~yd~~~  315 (387)
                      .+|...+.|...|+|+.||+..
T Consensus       260 ~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  260 ECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             CCceEEEeecCCceEEEEeccc
Confidence            3556666666678999999854

>PRK03629 tolB translocation protein TolB; Provisional

Probab=90.93  E-value=17  Score=35.52  Aligned_cols=177  Identities=8%  Similarity=-0.020  Sum_probs=93.1

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+++-+.+...+..-........+.+|++......      ...++++|..+++    ...+..-+....  
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~----~~~lt~~~~~~~--  290 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ----IRQVTDGRSNNT--  290 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC----EEEccCCCCCcC--
Confidence            4688999988887777655432222222222335655433211      1258889999888    777654321111  


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W  318 (387)
                        .....-||+ |++.....  ..++.+|+.++.-+.+... ......+.....|..|++.....  ..++.+|++++.+
T Consensus       291 --~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        291 --EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             --ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence              112233555 54443322  4677888887765555321 11111122222344555554332  3589999999988


Q ss_pred             eEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccC
Q 016552          319 KEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~  357 (387)
                      +.+....  ........-+|+.+++...   ...+.+++.+.
T Consensus       368 ~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        368 QVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            8776421  1112234466766555542   23466667764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.70  E-value=25  Score=37.09  Aligned_cols=204  Identities=14%  Similarity=0.161  Sum_probs=104.2

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCC--------Cc--ce-------------eEEEe
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RR--WC-------------AAGCS  194 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~--------r~--~~-------------~~~~~  194 (387)
                      ..-+.+++.||+...        ...++.+|+.|.  .|+.-+..+..        |.  ++             +.+..
T Consensus       188 ~TPlvvgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~  259 (764)
T TIGR03074       188 ATPLKVGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC  259 (764)
T ss_pred             cCCEEECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc
Confidence            456678999999754        145788888876  58765443311        10  00             01233


Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-----------CCCCCCCccccceEEEEECCEEEEEee--e
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-----------GELKDGRFSREAIDAVGWKGKLCLVNV--K  261 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-----------~~~p~~~~~~~~~~~~~~~g~lyv~gg--~  261 (387)
                      +++||+.. .+        ..+..+|.+|++.-  |..-           ...+...+. ....-++.++++|+-+.  .
T Consensus       260 ~~rV~~~T-~D--------g~LiALDA~TGk~~--W~fg~~G~vdl~~~~g~~~~g~~~-~ts~P~V~~g~VIvG~~v~d  327 (764)
T TIGR03074       260 ARRIILPT-SD--------ARLIALDADTGKLC--EDFGNNGTVDLTAGMGTTPPGYYY-PTSPPLVAGTTVVIGGRVAD  327 (764)
T ss_pred             CCEEEEec-CC--------CeEEEEECCCCCEE--EEecCCCceeeecccCcCCCcccc-cccCCEEECCEEEEEecccc
Confidence            45666532 11        25677788777754  5421           111111111 11334677888876321  0


Q ss_pred             -------CCeEEEEECCCC--ceeeccc--c----ccc----------CCCCcEEEEeCCeEEEEeC-------------
Q 016552          262 -------GAEGAVYDVVAN--TWDDMRE--G----MVR----------GWRGPVAAMDEEVLYGIDE-------------  303 (387)
Q Consensus       262 -------~~~i~~yD~~~~--~W~~~~~--~----~~~----------~~~~~~~~~~~~~ly~~~~-------------  303 (387)
                             ...+..||.+++  .|+.-..  .    +..          .|...+.-...|.+|+-.+             
T Consensus       328 ~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~  407 (764)
T TIGR03074       328 NYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTP  407 (764)
T ss_pred             cccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCcccc
Confidence                   156899999988  4764321  0    000          0111111112345555221             


Q ss_pred             ----CCCeEEEEeCCCC--ceeEccccc-----cccCceEEEEe---CCe---EEEEecCCCeEEEEeccCCCCCCceE
Q 016552          304 ----NSCTLSRYDEVMD--DWKEVVKSD-----LLKGARHAAAG---GGR---VCAVCENGGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       304 ----~~~~l~~yd~~~~--~W~~v~~~~-----~~~~~~~~~~~---~g~---i~v~gg~~~~i~~~d~~~~~~~~~W~  365 (387)
                          .++.|.+.|.+|+  .|..-....     .......++-+   +|+   +++.+..++.++++|..++  .-.|.
T Consensus       408 ~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG--~~l~~  484 (764)
T TIGR03074       408 ADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG--EPIVP  484 (764)
T ss_pred             CcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC--CEEee
Confidence                1246889999886  475422111     11122223322   563   6667677788999999864  13455

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=90.42  E-value=20  Score=35.60  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=84.5

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeC--CEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSR--GAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      .||+.|..        .++|++|...++|-.  |+...-...-++.++  ..++++||.+.        .++.+|+.+.+
T Consensus       147 Dly~~gsg--------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g--------~VEfwDpR~ks  208 (703)
T KOG2321|consen  147 DLYLVGSG--------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG--------VVEFWDPRDKS  208 (703)
T ss_pred             cEEEeecC--------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc--------eEEEecchhhh
Confidence            47776542        478999999998854  333222222222232  46778877655        78888888776


Q ss_pred             cccCeEEc------CCCCCCCccccceEEEEECC-EEEEEee-eCCeEEEEECCCCceeecccccccCCCCcEEE----E
Q 016552          226 KNSRWEKT------GELKDGRFSREAIDAVGWKG-KLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRGPVAA----M  293 (387)
Q Consensus       226 ~~~~W~~~------~~~p~~~~~~~~~~~~~~~g-~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~----~  293 (387)
                      .   -..+      ...|.....+. .++..+.+ -|-+.-| ....+++||+.+.+=-.+...... ...-...    -
T Consensus       209 r---v~~l~~~~~v~s~pg~~~~~s-vTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e-~pi~~l~~~~~~  283 (703)
T KOG2321|consen  209 R---VGTLDAASSVNSHPGGDAAPS-VTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE-LPIKKLDWQDTD  283 (703)
T ss_pred             h---heeeecccccCCCccccccCc-ceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc-cceeeecccccC
Confidence            1   1111      12222211111 23333433 4554444 337899999987653222211100 0000000    1


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEecCCCeE
Q 016552          294 DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVCENGGGI  350 (387)
Q Consensus       294 ~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~gg~~~~i  350 (387)
                      ..++|+-++  ...+..||..+++  .+....+.. -.-.|...++-+++++-.+..+
T Consensus       284 ~q~~v~S~D--k~~~kiWd~~~Gk--~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  284 QQNKVVSMD--KRILKIWDECTGK--PMASIEPTSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             CCceEEecc--hHHhhhcccccCC--ceeeccccCCcCceeeecCCceEEEecCCCcc
Confidence            123444442  2245667776652  222222222 2344566666677775544433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.31  E-value=6.1  Score=37.76  Aligned_cols=150  Identities=16%  Similarity=0.101  Sum_probs=79.9

Q ss_pred             ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC--EEEEEeeeCCeE
Q 016552          188 WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG--KLCLVNVKGAEG  265 (387)
Q Consensus       188 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g--~lyv~gg~~~~i  265 (387)
                      ...++..+++.+++||.+.        .+.++|..+.+    =...  ++..+-  .....+...|  .+|..+. +..+
T Consensus       206 l~~avS~Dgkylatgg~d~--------~v~Iw~~~t~e----hv~~--~~ghr~--~V~~L~fr~gt~~lys~s~-Drsv  268 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDR--------HVQIWDCDTLE----HVKV--FKGHRG--AVSSLAFRKGTSELYSASA-DRSV  268 (479)
T ss_pred             EEEEEcCCCcEEEecCCCc--------eEEEecCcccc----hhhc--cccccc--ceeeeeeecCccceeeeec-CCce
Confidence            3445566899999999866        56788877766    1111  111110  0012233333  4664432 2345


Q ss_pred             EEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEe
Q 016552          266 AVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVC  344 (387)
Q Consensus       266 ~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~g  344 (387)
                      -+++.+...-.+.-.+...+..+-. +..-+++..+|+.+.++..|+.... =+.+-.  ... ..-|++.+++.=||.|
T Consensus       269 kvw~~~~~s~vetlyGHqd~v~~Id-aL~reR~vtVGgrDrT~rlwKi~ee-sqlifr--g~~~sidcv~~In~~HfvsG  344 (479)
T KOG0299|consen  269 KVWSIDQLSYVETLYGHQDGVLGID-ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFR--GGEGSIDCVAFINDEHFVSG  344 (479)
T ss_pred             EEEehhHhHHHHHHhCCccceeeec-hhcccceEEeccccceeEEEecccc-ceeeee--CCCCCeeeEEEecccceeec
Confidence            5555444333222111111111111 1234578888887888888887222 111111  112 2345667888889998


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      +.++.|.++++.++
T Consensus       345 SdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  345 SDNGSIALWSLLKK  358 (479)
T ss_pred             cCCceEEEeeeccc
Confidence            88899999998865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=90.15  E-value=17  Score=34.38  Aligned_cols=72  Identities=11%  Similarity=-0.011  Sum_probs=41.5

Q ss_pred             CEEEEEecccC--CCCCCCCccEEEeccCCceee-CCCCCCCCc------ceeEEEeCC-EEEEEecCCCCCCCCCcceE
Q 016552          147 GKLILLAATTH--NFNPALTRPLIFDPICRTWTF-GPELVTPRR------WCAAGCSRG-AVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       147 ~~l~v~GG~~~--~~~~~~~~~~vyd~~t~~W~~-l~~~p~~r~------~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v  216 (387)
                      ..||+...+..  ........+.+||+.|.+-.. ++..+.||.      ...+..-+| .+||.       +....+.+
T Consensus        58 ~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-------n~~p~~~V  130 (352)
T TIGR02658        58 SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-------QFSPSPAV  130 (352)
T ss_pred             CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-------cCCCCCEE
Confidence            45777765211  112345678999999987654 433234441      122223344 57876       22234688


Q ss_pred             EEEECCCCc
Q 016552          217 EKWDLMNGE  225 (387)
Q Consensus       217 ~~yd~~~~~  225 (387)
                      -+.|..+++
T Consensus       131 ~VvD~~~~k  139 (352)
T TIGR02658       131 GVVDLEGKA  139 (352)
T ss_pred             EEEECCCCc
Confidence            999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=90.01  E-value=19  Score=34.85  Aligned_cols=20  Identities=15%  Similarity=0.386  Sum_probs=16.6

Q ss_pred             CeEEEEECCCCceeeccccc
Q 016552          263 AEGAVYDVVANTWDDMREGM  282 (387)
Q Consensus       263 ~~i~~yD~~~~~W~~~~~~~  282 (387)
                      .+|+.|||+++.-+++.-++
T Consensus       287 GdIylydP~td~lekldI~l  306 (668)
T COG4946         287 GDIYLYDPETDSLEKLDIGL  306 (668)
T ss_pred             CcEEEeCCCcCcceeeecCC
Confidence            78999999999988876543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=89.72  E-value=21  Score=34.69  Aligned_cols=178  Identities=12%  Similarity=0.048  Sum_probs=91.2

Q ss_pred             CCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       161 ~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      ....++++++...++-+++.-+-.+-+..+.-.-+|.|.|.--...    ......+.|-...+-     ....+++.+.
T Consensus       104 ~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~t----PF~q~~~lYkv~~dg-----~~~e~LnlGp  174 (668)
T COG4946         104 LQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHT----PFSQWTELYKVNVDG-----IKTEPLNLGP  174 (668)
T ss_pred             CccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCC----CcccceeeeEEccCC-----ceeeeccCCc
Confidence            3456789999998888887665221122222234678887654332    222345667666554     1122344332


Q ss_pred             ccccceEEEEECCEEEEEeeeC--------------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-
Q 016552          241 FSREAIDAVGWKGKLCLVNVKG--------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-  305 (387)
Q Consensus       241 ~~~~~~~~~~~~g~lyv~gg~~--------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-  305 (387)
                      .    ...+.-||.++ +|...              ..+|+=--...+.+++-+ +.-  ...+.+++++++|++.... 
T Consensus       175 a----thiv~~dg~iv-igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vd-l~~--~vS~PmIV~~RvYFlsD~eG  246 (668)
T COG4946         175 A----THIVIKDGIIV-IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVD-LDG--NVSSPMIVGERVYFLSDHEG  246 (668)
T ss_pred             e----eeEEEeCCEEE-EccCcccCcccccccCCccceEEEEecCCcceeeeee-cCC--CcCCceEEcceEEEEecccC
Confidence            1    22455577554 43321              222222111112332222 111  2334556788999997543 


Q ss_pred             -CeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          306 -CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       306 -~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                       |.|+.-|.+.+--++-......-  ..=+..+|+-+|| ..+++|++||+.+.
T Consensus       247 ~GnlYSvdldGkDlrrHTnFtdYY--~R~~nsDGkrIvF-q~~GdIylydP~td  297 (668)
T COG4946         247 VGNLYSVDLDGKDLRRHTNFTDYY--PRNANSDGKRIVF-QNAGDIYLYDPETD  297 (668)
T ss_pred             ccceEEeccCCchhhhcCCchhcc--ccccCCCCcEEEE-ecCCcEEEeCCCcC
Confidence             56888787766433322221111  1123456777777 45566888888865

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=89.65  E-value=12  Score=34.69  Aligned_cols=133  Identities=16%  Similarity=0.062  Sum_probs=73.9

Q ss_pred             CccEEEeccCC-----ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC
Q 016552          164 TRPLIFDPICR-----TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       164 ~~~~vyd~~t~-----~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~  238 (387)
                      ..+++|+....     +.+.+.....+-...+.+.++++|.+..|.          .+.+|+...++   ++...+.+..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~----------~l~v~~l~~~~---~l~~~~~~~~  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGN----------KLYVYDLDNSK---TLLKKAFYDS  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETT----------EEEEEEEETTS---SEEEEEEE-B
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecC----------EEEEEEccCcc---cchhhheecc
Confidence            56899999885     566555444444456667778887666552          56777776555   2777765544


Q ss_pred             CCccccceEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEE--EEeC
Q 016552          239 GRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLS--RYDE  313 (387)
Q Consensus       239 ~~~~~~~~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~--~yd~  313 (387)
                      +...   ....++++.|++-.... -.+..||.+..+-..++.... .....++.+. ++..++.+-..|.++  .|++
T Consensus       129 ~~~i---~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~-~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  129 PFYI---TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ-PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SSSE---EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             eEEE---EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC-CccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            4332   45667788776544333 445667886666776664222 2222333333 444444443456544  4564

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=89.47  E-value=16  Score=32.95  Aligned_cols=101  Identities=9%  Similarity=0.044  Sum_probs=57.2

Q ss_pred             EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE
Q 016552          255 LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA  334 (387)
Q Consensus       255 lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~  334 (387)
                      +.+-++.+..+-+.|+.+.+=...-.+ ..+.-....+..||.|...||.+|+++.||....+=  +..++....-+.++
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~  240 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLC  240 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEE
Confidence            334445557788888877554322110 111112334456889999999999999999876532  33333333334445


Q ss_pred             EeCCeEEEEecCCCeEEEEeccCC
Q 016552          335 AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       335 ~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...++..+.-+-+..|-++|...+
T Consensus       241 fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  241 FSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             ecCCceeEeeccCCceEEEeccch
Confidence            555555555455555666666543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=89.27  E-value=22  Score=34.52  Aligned_cols=138  Identities=9%  Similarity=-0.132  Sum_probs=77.2

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      .+++++|..++.++++...+..-........+.+||+......      ...+.++|..+++    .+++..-..  .  
T Consensus       257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g------~~~Iy~~dl~~g~----~~rlt~~g~--~--  322 (419)
T PRK04043        257 PDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG------YPNIFMKKLNSGS----VEQVVFHGK--N--  322 (419)
T ss_pred             cEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC------CceEEEEECCCCC----eEeCccCCC--c--
Confidence            5799999999999998765431112222223446777654322      2478889998888    766542211  1  


Q ss_pred             cceEEEEECCEEE-EEeee-------C-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEe
Q 016552          244 EAIDAVGWKGKLC-LVNVK-------G-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYD  312 (387)
Q Consensus       244 ~~~~~~~~~g~ly-v~gg~-------~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd  312 (387)
                        .....-+|+.. +....       + ..+.++|++++.++.+... .. -..++-.-.|..|++.....  ..|+.++
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~-~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GV-NQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CC-cCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence              11233355532 22221       1 4788999999998877652 11 11234334455565554332  2477777


Q ss_pred             CCCCcee
Q 016552          313 EVMDDWK  319 (387)
Q Consensus       313 ~~~~~W~  319 (387)
                      .+.+.=.
T Consensus       399 l~g~~~~  405 (419)
T PRK04043        399 LNYNKSF  405 (419)
T ss_pred             cCCCeeE
Confidence            7665333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=89.14  E-value=16  Score=34.99  Aligned_cols=126  Identities=11%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      +|-|+..|-.+.        .+.+||.....      .++.+|..-.. -......-||...+..-.+..+..+|+....
T Consensus       358 DgLifgtgt~d~--------~vkiwdlks~~------~~a~Fpght~~-vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  358 DGLIFGTGTPDG--------VVKIWDLKSQT------NVAKFPGHTGP-VKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             CceEEeccCCCc--------eEEEEEcCCcc------ccccCCCCCCc-eeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            566776654433        67888887665      33444432111 0011223355544444444568999987654


Q ss_pred             -eeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeC
Q 016552          275 -WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGG  337 (387)
Q Consensus       275 -W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~  337 (387)
                       ..+++  ........+..+. .|....+++++-.|+.|+-.+..|+++.......+....+..+
T Consensus       423 n~kt~~--l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg  485 (506)
T KOG0289|consen  423 NFKTIQ--LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG  485 (506)
T ss_pred             ccceee--ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence             22222  1222112222322 3455556555556888888999999999877666555555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=89.03  E-value=23  Score=34.42  Aligned_cols=179  Identities=13%  Similarity=0.036  Sum_probs=84.7

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..+++.|.....-+.+......-........+.+|+... ...     ....++++|..+++    =..+...+....  
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s-~~~-----~~~~I~~~dl~~g~----~~~l~~~~g~~~--  243 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVS-FES-----KKPVVYVHDLATGR----RRVVANFKGSNS--  243 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEE-ccC-----CCcEEEEEECCCCC----EEEeecCCCCcc--
Confidence            567888876555455432222211222222233454432 211     12368899998887    444443331111  


Q ss_pred             cceEEEEECC-EEEEEee-eC-CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--CeEEEEeCCCCce
Q 016552          244 EAIDAVGWKG-KLCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--CTLSRYDEVMDDW  318 (387)
Q Consensus       244 ~~~~~~~~~g-~lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--~~l~~yd~~~~~W  318 (387)
                        .....-|| +|++... .+ ..++.+|..++..+.+.... .....+.-.-.|..|++.....  ..|+.+|.+++..
T Consensus       244 --~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        244 --APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             --ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce
Confidence              12223355 4544322 22 56888888877665554311 1111222222344565554322  3578888877776


Q ss_pred             eEccccccccCceEEEEeCCe-EEEEecCC--CeEEEEeccCC
Q 016552          319 KEVVKSDLLKGARHAAAGGGR-VCAVCENG--GGIVVVDVKAA  358 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~g~-i~v~gg~~--~~i~~~d~~~~  358 (387)
                      +.+.......... ...-+|+ |+.....+  ..++++|..+.
T Consensus       321 ~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        321 QRVTFTGSYNTSP-RISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             EEEecCCCCcCce-EECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            6654221111112 2333454 44443322  46888887754

>smart00284 OLF Olfactomedin-like domains

Probab=88.37  E-value=18  Score=32.37  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             ceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCC----C--------cceeEEEeCCEEEEEecCCC
Q 016552          139 PVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP----R--------RWCAAGCSRGAVYVASGIGS  206 (387)
Q Consensus       139 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~----r--------~~~~~~~~~~~iyv~GG~~~  206 (387)
                      |-+.++.+|.+|.--.       ....+..||..+++-.....+|.+    +        ...-.++.++-|+|+=....
T Consensus        76 GtG~VVYngslYY~~~-------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~  148 (255)
T smart00284       76 GTGVVVYNGSLYFNKF-------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ  148 (255)
T ss_pred             cccEEEECceEEEEec-------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC
Confidence            4567888888888533       235789999999976433333321    1        22345556666766522211


Q ss_pred             CCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeeccccc
Q 016552          207 QFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGM  282 (387)
Q Consensus       207 ~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~  282 (387)
                      . .+. + .+-..|+.+=+..-.|..-  .+...+    ..+.++-|.||++....    .-..+||+.+++=..+.-.+
T Consensus       149 ~-~g~-i-vvSkLnp~tL~ve~tW~T~--~~k~sa----~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f  219 (255)
T smart00284      149 N-AGK-I-VISKLNPATLTIENTWITT--YNKRSA----SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPF  219 (255)
T ss_pred             C-CCC-E-EEEeeCcccceEEEEEEcC--CCcccc----cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeee
Confidence            0 011 0 2223344322211127762  222222    34566678999996422    44678999987633322212


Q ss_pred             ccCCCCcEEE---EeCCeEEEEeCCCCeEEEEeCC
Q 016552          283 VRGWRGPVAA---MDEEVLYGIDENSCTLSRYDEV  314 (387)
Q Consensus       283 ~~~~~~~~~~---~~~~~ly~~~~~~~~l~~yd~~  314 (387)
                      +......+..   ..+.+||+-+  +|.+..||..
T Consensus       220 ~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v~  252 (255)
T smart00284      220 ENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDIA  252 (255)
T ss_pred             ccccccceeceeCCCCCeEEEEe--CCeEEEEEEE
Confidence            2221222222   2367888884  6778888764

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=87.57  E-value=13  Score=30.78  Aligned_cols=75  Identities=8%  Similarity=0.070  Sum_probs=44.7

Q ss_pred             EEECCEEEEEeeeC---C--eEEEEECCCCce-eecccccccC--CCCcEE-EEeCCeEEEEeCC--C--CeEEEEe---
Q 016552          249 VGWKGKLCLVNVKG---A--EGAVYDVVANTW-DDMREGMVRG--WRGPVA-AMDEEVLYGIDEN--S--CTLSRYD---  312 (387)
Q Consensus       249 ~~~~g~lyv~gg~~---~--~i~~yD~~~~~W-~~~~~~~~~~--~~~~~~-~~~~~~ly~~~~~--~--~~l~~yd---  312 (387)
                      +.++|.+|-+....   .  .|.+||+.+++. ..++.+....  ...... ++.+++|-++...  .  -.||+.+   
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~   81 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG   81 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence            57899999776554   1  699999999999 5555311111  112223 2336777777431  2  2455544   


Q ss_pred             CCCCceeEccc
Q 016552          313 EVMDDWKEVVK  323 (387)
Q Consensus       313 ~~~~~W~~v~~  323 (387)
                      -...+|+++-.
T Consensus        82 ~~~~SWtK~~~   92 (164)
T PF07734_consen   82 YGKESWTKLFT   92 (164)
T ss_pred             cCcceEEEEEE
Confidence            23678998764

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=87.48  E-value=35  Score=34.53  Aligned_cols=54  Identities=19%  Similarity=0.260  Sum_probs=34.0

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCc
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ..+|+|++..+     |-...-++.+ ..+.--..+.. +++|+-.+..+ .+..+|+.+..
T Consensus        47 g~IEiwN~~~~-----w~~~~vi~g~-~drsIE~L~W~e~~RLFS~g~sg-~i~EwDl~~lk  101 (691)
T KOG2048|consen   47 GNIEIWNLSNN-----WFLEPVIHGP-EDRSIESLAWAEGGRLFSSGLSG-SITEWDLHTLK  101 (691)
T ss_pred             CcEEEEccCCC-----ceeeEEEecC-CCCceeeEEEccCCeEEeecCCc-eEEEEecccCc
Confidence            47899999986     8765544332 11222334455 78888877665 67777776653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.40  E-value=29  Score=33.51  Aligned_cols=109  Identities=10%  Similarity=-0.023  Sum_probs=55.8

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce-----eEccccc
Q 016552          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDW-----KEVVKSD  325 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W-----~~v~~~~  325 (387)
                      -+|.+++++..+.-....|.....|+.+.........+ .....++.+++++. .|.++.-+.....|     .++....
T Consensus       248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~-v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~  325 (398)
T PLN00033        248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQN-MGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKS  325 (398)
T ss_pred             CCCCEEEEECCccEEEecCCCCcceEEecCCCccceee-eeEcCCCCEEEEeC-CceEEEecCCCCcccccceeecccCC
Confidence            35566666655533334454455599887533222211 22235678888774 56666666666655     3333221


Q ss_pred             cccCceEEEEe-CCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          326 LLKGARHAAAG-GGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       326 ~~~~~~~~~~~-~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      .......+... ++.++++|..|. ++.-...    |+.|+.
T Consensus       326 ~~~~l~~v~~~~d~~~~a~G~~G~-v~~s~D~----G~tW~~  362 (398)
T PLN00033        326 RGFGILDVGYRSKKEAWAAGGSGI-LLRSTDG----GKSWKR  362 (398)
T ss_pred             CCcceEEEEEcCCCcEEEEECCCc-EEEeCCC----CcceeE
Confidence            11122333333 567877755543 3333333    347986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=87.20  E-value=14  Score=33.61  Aligned_cols=65  Identities=12%  Similarity=-0.025  Sum_probs=34.9

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                      |+...+..|.+..+..+|.++++=...-..-..........-.|-.|.+-+..++++..||..++
T Consensus       101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen  101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            44444555666789999999986432211001000000011123345555556788999998755

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.08  E-value=39  Score=34.77  Aligned_cols=107  Identities=12%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC-ceeEccccc
Q 016552          248 AVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD-DWKEVVKSD  325 (387)
Q Consensus       248 ~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~-~W~~v~~~~  325 (387)
                      ...-||.+.+.|+.++.+-+||..++... +... ...+..+-.... .|+..+-..-+|++.+||.... ..+....+.
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence            33458888888888889999998876432 2222 222222222223 3444443334789999999765 344444433


Q ss_pred             cccCceEEEEeC--CeEEEEecC-CCeEEEEeccCC
Q 016552          326 LLKGARHAAAGG--GRVCAVCEN-GGGIVVVDVKAA  358 (387)
Q Consensus       326 ~~~~~~~~~~~~--g~i~v~gg~-~~~i~~~d~~~~  358 (387)
                      +.  .+.+++.+  |.|+++|+. ...|+++++.++
T Consensus       435 p~--QfscvavD~sGelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  435 PI--QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             ce--eeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence            33  45566666  899999774 467888877765

>PTZ00421 coronin; Provisional

Probab=87.05  E-value=12  Score=37.17  Aligned_cols=105  Identities=5%  Similarity=-0.019  Sum_probs=57.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecc--c-ccccCCC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEcccc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMR--E-GMVRGWR--GPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKS  324 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~--~-~~~~~~~--~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~  324 (387)
                      ++.+.+.++.+..+.+||..++......  . ....+..  ...++..  ++.+++.++.++.|.+||.++..-  +..+
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l  164 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVI  164 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEE
Confidence            4455556666667888887654321100  0 0011111  1123332  335666666788999999987642  2222


Q ss_pred             ccccCce--EEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          325 DLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ~~~~~~~--~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .......  .....+|.+++.|+.+..|-+||+.+.
T Consensus       165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence            2222222  222347888888888888999998754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.68  E-value=29  Score=32.92  Aligned_cols=155  Identities=14%  Similarity=0.183  Sum_probs=87.4

Q ss_pred             EEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEEC
Q 016552          191 AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       191 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~  270 (387)
                      .+..++++|+...     +    ..+..+|+.+....  |+....-......   .....-+|+||+-...+ .+++||.
T Consensus        64 ~~~~dg~v~~~~~-----~----G~i~A~d~~~g~~~--W~~~~~~~~~~~~---~~~~~~~G~i~~g~~~g-~~y~ld~  128 (370)
T COG1520          64 PADGDGTVYVGTR-----D----GNIFALNPDTGLVK--WSYPLLGAVAQLS---GPILGSDGKIYVGSWDG-KLYALDA  128 (370)
T ss_pred             cEeeCCeEEEecC-----C----CcEEEEeCCCCcEE--ecccCcCcceecc---CceEEeCCeEEEecccc-eEEEEEC
Confidence            3677889999711     1    16788999988754  8755421001111   12333389988765554 7899999


Q ss_pred             CCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEccccc-cccCceEEEEeCCeEEEEec
Q 016552          271 VAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSD-LLKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       271 ~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~-~~~~~~~~~~~~g~i~v~gg  345 (387)
                      .++  .|..-... . ......+++.++.+|+.. .++.+++.|.++.  .|..-...+ ...........++.+|+-..
T Consensus       129 ~~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~  205 (370)
T COG1520         129 STGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD  205 (370)
T ss_pred             CCCcEEEEEecCC-C-eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC
Confidence            644  68765543 1 111223445566676653 4578888888854  577533321 11111112245566666533


Q ss_pred             C-CCeEEEEeccCCCCCCceE
Q 016552          346 N-GGGIVVVDVKAAAAPTIFV  365 (387)
Q Consensus       346 ~-~~~i~~~d~~~~~~~~~W~  365 (387)
                      + ...++.+|+.++  ..+|.
T Consensus       206 ~~~~~~~a~~~~~G--~~~w~  224 (370)
T COG1520         206 GYDGILYALNAEDG--TLKWS  224 (370)
T ss_pred             CCcceEEEEEccCC--cEeee
Confidence            2 346788888633  24677

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.10  E-value=26  Score=33.39  Aligned_cols=182  Identities=10%  Similarity=0.045  Sum_probs=93.5

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCC---ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICR---TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~---~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      .++.-+|.|+.+       ..+..+|..-+   .|+-+-   .++....+...+|+-.++-+.+.        .+..|+.
T Consensus       322 pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr---~~~v~dlait~Dgk~vl~v~~d~--------~i~l~~~  383 (519)
T KOG0293|consen  322 PDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVR---DPKVHDLAITYDGKYVLLVTVDK--------KIRLYNR  383 (519)
T ss_pred             cCCceeEecCCC-------CcEEEecCCcchhhcccccc---cceeEEEEEcCCCcEEEEEeccc--------ceeeech
Confidence            355566666633       34566666544   566442   24555555555665433333322        5566777


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccccc--ccCCCCcEEEEeC-CeE
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VRGWRGPVAAMDE-EVL  298 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~~~~~~~~~~~~-~~l  298 (387)
                      ++..    =+.+-....+..    ..+..-+|++.++.-....+...|.+  .|..+..-+  ..+..--..|+.| +.-
T Consensus       384 e~~~----dr~lise~~~it----s~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  384 EARV----DRGLISEEQPIT----SFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             hhhh----hhccccccCcee----EEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcc
Confidence            6665    221111111211    22445588888887777788999988  455444211  2222222223322 224


Q ss_pred             EEE-eCCCCeEEEEeCCCCceeEccccccccCceEEEEeCC--e-EEEEecCCCeEEEEecc
Q 016552          299 YGI-DENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG--R-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       299 y~~-~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g--~-i~v~gg~~~~i~~~d~~  356 (387)
                      |++ |.++++++.|+.+++.=  +..++.......+|+.+-  . ++.-+++.+.|-++-++
T Consensus       454 fiaSGSED~kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  454 FIASGSEDSKVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eEEecCCCceEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            454 44578899999888743  333444445556666542  2 22233344555555444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.00  E-value=45  Score=34.37  Aligned_cols=170  Identities=13%  Similarity=0.083  Sum_probs=88.0

Q ss_pred             CCccEEEeccCCceeeCCCCCCCC-cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          163 LTRPLIFDPICRTWTFGPELVTPR-RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ...+.+||..|..-.+.=.....| ........++.+.++-|+.+       ..+.+||...+..    .-   +    +
T Consensus        42 ~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaD-------GsVqif~~~s~~~----~~---t----f  103 (888)
T KOG0306|consen   42 LEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYAD-------GSVQIFSLESEEI----LI---T----F  103 (888)
T ss_pred             cccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecC-------ceEEeeccCCCce----ee---e----e
Confidence            456889999988443322222333 22233344666666666654       2778888776651    10   1    1


Q ss_pred             cccceEEE--EE--CCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          242 SREAIDAV--GW--KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       242 ~~~~~~~~--~~--~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                      ..+..+..  -+  .|...+-|+.+.+|.+||.....=. .+.. ...... ......+..+.+-.+.++.|..||.++.
T Consensus       104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G-Hkd~iT-~~~F~~~~~~lvS~sKDs~iK~WdL~tq  181 (888)
T KOG0306|consen  104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRG-HKDSIT-QALFLNGDSFLVSVSKDSMIKFWDLETQ  181 (888)
T ss_pred             cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeec-chHHHh-HHhccCCCeEEEEeccCceEEEEecccc
Confidence            11101111  12  3445566776678999887544211 0100 000000 0011223455555555677999999988


Q ss_pred             ceeEccccccccCc-eEEEEeCCeEEEEecCCCeEEEEec
Q 016552          317 DWKEVVKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       317 ~W~~v~~~~~~~~~-~~~~~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      .-.+.-  ...++- .+++.. ++++|+++.+..+-+|++
T Consensus       182 hCf~Th--vd~r~Eiw~l~~~-~~~lvt~~~dse~~v~~L  218 (888)
T KOG0306|consen  182 HCFETH--VDHRGEIWALVLD-EKLLVTAGTDSELKVWEL  218 (888)
T ss_pred             eeeeEE--ecccceEEEEEEe-cceEEEEecCCceEEEEe
Confidence            654432  233332 434444 478888787777777777

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=85.41  E-value=23  Score=34.64  Aligned_cols=106  Identities=10%  Similarity=-0.044  Sum_probs=63.4

Q ss_pred             EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCC-CcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccc
Q 016552          250 GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       250 ~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~  327 (387)
                      .-||+-.++||+...+-++|+.+-+=+.... ++..-. ..+.+ .-+.++.+-...+|.|.+||....+  .|..++..
T Consensus       474 ~pdgrtLivGGeastlsiWDLAapTprikae-ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGh  550 (705)
T KOG0639|consen  474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGH  550 (705)
T ss_pred             cCCCceEEeccccceeeeeeccCCCcchhhh-cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeecccCC
Confidence            3478888899988888888988766543332 222111 11222 2355666665668899999998773  44455544


Q ss_pred             cCceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552          328 KGARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...+.+..+  +|.=+-.||-.+.+-.||..+.
T Consensus       551 tDGascIdis~dGtklWTGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  551 TDGASCIDISKDGTKLWTGGLDNTVRCWDLREG  583 (705)
T ss_pred             CCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence            444333333  3555556665666666666644

>PRK03629 tolB translocation protein TolB; Provisional

Probab=84.33  E-value=43  Score=32.66  Aligned_cols=135  Identities=13%  Similarity=0.100  Sum_probs=70.2

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEee-eC-CeEEEEECCCCceeecccccccCCCCcE
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNV-KG-AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg-~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      ..++++|..+++    -+.+...+....    .....-||+ |++... .+ ..++.+|+++++.+.+... ......+.
T Consensus       223 ~~i~i~dl~~G~----~~~l~~~~~~~~----~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~  293 (429)
T PRK03629        223 SALVIQTLANGA----VRQVASFPRHNG----APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPT  293 (429)
T ss_pred             cEEEEEECCCCC----eEEccCCCCCcC----CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceE
Confidence            367888988887    666654443211    112333554 554422 22 4689999998877766432 11111222


Q ss_pred             EEEeCCeEEEEeCCC--CeEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552          291 AAMDEEVLYGIDENS--CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       291 ~~~~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~  358 (387)
                      -.-.+..|++.....  ..|+.+|.++..-+.+....... ......-+|+ |++.+..  ...++++|+.+.
T Consensus       294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             ECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc-cCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            222344455544322  36888898887665553321111 1222334554 4444332  356888888755

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=84.08  E-value=45  Score=32.80  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=50.5

Q ss_pred             CcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552          288 GPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       288 ~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..++++ .++...++||.++++.+|-.+.+.-.+.......++....+++  ++..+..|.....+++||....
T Consensus       446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence            344444 4667888999999999999999876666555566666555554  4555555555788999999865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=83.72  E-value=45  Score=32.46  Aligned_cols=160  Identities=9%  Similarity=-0.015  Sum_probs=79.1

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ..++++|..+++-+.+...+...... .-.-++ +|++....+.      ...++.+|..++.    ...+..-....  
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g~~~~~-~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~----~~~lt~~~~~~--  294 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRGHNGAP-AFSPDGSRLAFASSKDG------VLNIYVMGANGGT----PSQLTSGAGNN--  294 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCCccCce-eECCCCCEEEEEEecCC------cEEEEEEECCCCC----eEeeccCCCCc--
Confidence            45889999888766665544322211 222244 4554432221      1257778888777    66665322111  


Q ss_pred             ccceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCcee
Q 016552          243 REAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWK  319 (387)
Q Consensus       243 ~~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~  319 (387)
                        ......-||+ |++.....  ..++.+|..+..=+.+..   .+ ..+.....++.|++.+.  ..++.+|.+++.++
T Consensus       295 --~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~  366 (429)
T PRK01742        295 --TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--DNVVKQDLTSGSTE  366 (429)
T ss_pred             --CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--CCEEEEECCCCCeE
Confidence              1223334565 55544333  345555655443222211   11 11222223445555432  46788999998887


Q ss_pred             EccccccccCceEEEEeCCeEEEEecC
Q 016552          320 EVVKSDLLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       320 ~v~~~~~~~~~~~~~~~~g~i~v~gg~  346 (387)
                      .+....  ........-+|+.++++..
T Consensus       367 ~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        367 VLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             EecCCC--CCCCceECCCCCEEEEEEc
Confidence            654321  1122234557777776654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.93  E-value=42  Score=36.15  Aligned_cols=163  Identities=11%  Similarity=0.080  Sum_probs=84.6

Q ss_pred             eeeCCCC-CCCCcceeEEEe---CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc-ccceEEEE
Q 016552          176 WTFGPEL-VTPRRWCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS-REAIDAVG  250 (387)
Q Consensus       176 W~~l~~~-p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~-~~~~~~~~  250 (387)
                      |..+..| +.+|..-..+..   .|++++.|+.         +.|.++|.....      .+.++|..-.. ....++-.
T Consensus      1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~---------r~IRIWDa~~E~------~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV---------RSIRIWDAHKEQ------VVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred             eccccccCccCCCCCeeeehhhhCCeEEecCCe---------eEEEEEecccce------eEeecccCCCccceeecccc
Confidence            5555544 456644333332   5788887753         478888888776      34455543211 00111222


Q ss_pred             ECCEEEEEeeeCCeEEEEECCCC-------ceeecccccccCCCCcEEEEeCCeE-EEEeCCCCeEEEEeCCCCceeEcc
Q 016552          251 WKGKLCLVNVKGAEGAVYDVVAN-------TWDDMREGMVRGWRGPVAAMDEEVL-YGIDENSCTLSRYDEVMDDWKEVV  322 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~-------~W~~~~~~~~~~~~~~~~~~~~~~l-y~~~~~~~~l~~yd~~~~~W~~v~  322 (387)
                      .+|.+.+.|-.+..+.+||....       .|++-....+  .-+.+. --+|.- .+-+..+|.|..+|+...  ....
T Consensus      1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~--~~e~ 1293 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSL-QRQGLGELVSGSQDGDIQLLDLRMS--SKET 1293 (1387)
T ss_pred             cCCceEEEeecCCceEEeecccCCccccceeecccCCccc--ceeEEe-ecCCCcceeeeccCCeEEEEecccC--cccc
Confidence            35677777766678999996532       2333222100  000011 111222 233445789999998775  2222


Q ss_pred             cccccc----C--ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          323 KSDLLK----G--ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       323 ~~~~~~----~--~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+....    +  ..++..+...-.+..|.+..|.+|+.++.
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChh
Confidence            211111    2  24455565555555566688999998855

>cd00094 HX Hemopexin-like repeats

Probab=82.89  E-value=29  Score=29.63  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=36.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeec-ccccccCCC-----CcEEE-EeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDM-REGMVRGWR-----GPVAA-MDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~~~~~~-----~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      ++++|++.|.  ..+.||..+++-..- +..+...|.     ..++. ..++++|++.  ....+.||..+.+
T Consensus       110 ~~~~yfFkg~--~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~--g~~y~~~d~~~~~  178 (194)
T cd00094         110 NGKTYFFKGD--KYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFK--GDQYWRFDPRSKE  178 (194)
T ss_pred             CCEEEEEeCC--EEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEE--CCEEEEEeCccce
Confidence            6899999873  688898766553211 100111111     12222 3337899995  4579999998765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=82.85  E-value=14  Score=34.53  Aligned_cols=104  Identities=11%  Similarity=0.042  Sum_probs=61.1

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC-CCCeEEEEeCCCCceeEccccccccCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDLLKGA  330 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~  330 (387)
                      .+..++.|..+..+-+.|+++++-..--.+.-.  ..-.+++....=|++.. .++.+.+||.+.++-..-- -..+.+-
T Consensus       162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~--~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V  238 (460)
T KOG0285|consen  162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE--TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGV  238 (460)
T ss_pred             CceeEEecCCCceeEEEEcccCeEEEeecchhh--eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-cccccee
Confidence            456666666667889999999876532221111  12345566666666653 4678999999988543210 0122223


Q ss_pred             eEEEEe-CCeEEEEecCCCeEEEEeccCC
Q 016552          331 RHAAAG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       331 ~~~~~~-~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++..+ ...+++.||....+-++|+.++
T Consensus       239 ~~L~lhPTldvl~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  239 YCLDLHPTLDVLVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             EEEeccccceeEEecCCcceEEEeeeccc
Confidence            433333 2456667677777888888865

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=82.23  E-value=2.9  Score=25.40  Aligned_cols=25  Identities=16%  Similarity=0.070  Sum_probs=17.5

Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCC
Q 016552          290 VAAMDEEVLYGIDENSCTLSRYDEVM  315 (387)
Q Consensus       290 ~~~~~~~~ly~~~~~~~~l~~yd~~~  315 (387)
                      +.++.++.||+.+. ++.++++|+++
T Consensus        16 ~~~v~~g~vyv~~~-dg~l~ald~~t   40 (40)
T PF13570_consen   16 SPAVAGGRVYVGTG-DGNLYALDAAT   40 (40)
T ss_dssp             --EECTSEEEEE-T-TSEEEEEETT-
T ss_pred             CCEEECCEEEEEcC-CCEEEEEeCCC
Confidence            44677888888764 78999999875

>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A

Probab=82.19  E-value=43  Score=31.11  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=84.9

Q ss_pred             EEEEECCEEEEEecccCC-C-CC-CCCccEEEec-cCCceeeCCCCC-----CCC---cceeEEEeCCEEEEEecCCCCC
Q 016552          141 QLVSLSGKLILLAATTHN-F-NP-ALTRPLIFDP-ICRTWTFGPELV-----TPR---RWCAAGCSRGAVYVASGIGSQF  208 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~-~-~~-~~~~~~vyd~-~t~~W~~l~~~p-----~~r---~~~~~~~~~~~iyv~GG~~~~~  208 (387)
                      .++.++|.|+.++...-. . .. ...-+..+.. ...+|+......     ..|   ..+.+++-+++||++-|.....
T Consensus         3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~   82 (310)
T PF13859_consen    3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS   82 (310)
T ss_dssp             EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred             CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence            467789999988764321 1 11 1111222433 345788743211     122   2466677799999886653321


Q ss_pred             CCCCcceEEEEECCCCccccCeEEcCCCCCCCcc------ccceEEEEE-CCEEEEE-ee-----eC-CeEEEEECC-CC
Q 016552          209 SSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS------REAIDAVGW-KGKLCLV-NV-----KG-AEGAVYDVV-AN  273 (387)
Q Consensus       209 ~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~------~~~~~~~~~-~g~lyv~-gg-----~~-~~i~~yD~~-~~  273 (387)
                      .....-.+..+....+...  |.....++.....      ....+.+.. ||.|.+- -+     .. ..+.+|... ..
T Consensus        83 ~~~~~~~llLvks~~~g~~--W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~  160 (310)
T PF13859_consen   83 AGADDWGLLLVKSTDGGIK--WGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGK  160 (310)
T ss_dssp             -SSTTEEEEEEEEESSSSE--E---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTS
T ss_pred             ccccccceeeeeccCCcce--eeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCcc
Confidence            1112223344433222222  9987766543221      111222333 5655432 11     11 356788777 56


Q ss_pred             ceeecccccccCCCCcEEEEe-CCeEEEEeCC-CCeEEEE--eCCCCceeE-cccccc
Q 016552          274 TWDDMREGMVRGWRGPVAAMD-EEVLYGIDEN-SCTLSRY--DEVMDDWKE-VVKSDL  326 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~-~~~l~~y--d~~~~~W~~-v~~~~~  326 (387)
                      +|..-....+.+...|+++-. +|+|.++... .|.-.+|  .-...+|++ +..+++
T Consensus       161 ~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtlsr  218 (310)
T PF13859_consen  161 TWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLSR  218 (310)
T ss_dssp             S-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTTT
T ss_pred             ceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccce
Confidence            898765534555567888888 7899888753 4534444  456778999 556554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.64  E-value=52  Score=31.70  Aligned_cols=182  Identities=10%  Similarity=-0.026  Sum_probs=90.8

Q ss_pred             CCccEEEeccCCcee--eCCCCCCCCc-ceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCC-----ccccCeEEc
Q 016552          163 LTRPLIFDPICRTWT--FGPELVTPRR-WCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG-----EKNSRWEKT  233 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~--~l~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-----~~~~~W~~~  233 (387)
                      ...++.+...|..-.  .+-.-+.... ...+. .-+++..++.-...    ...+.+++.|....     .    |..+
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~----~~~s~v~~~d~~~~~~~~~~----~~~l  272 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG----TSESEVYLLDLDDGGSPDAK----PKLL  272 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS----SSEEEEEEEECCCTTTSS-S----EEEE
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc----ccCCeEEEEeccccCCCcCC----cEEE
Confidence            456777777776544  2211222222 22222 23444333322211    11357888888875     5    8877


Q ss_pred             CCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCCCc---ee-ecccccccCCCCcEEEEeCCeEEEEeCCC-
Q 016552          234 GELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANT---WD-DMREGMVRGWRGPVAAMDEEVLYGIDENS-  305 (387)
Q Consensus       234 ~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~~---W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-  305 (387)
                      .+--...    .......++.+|+....+   ..+..+++....   |. .+.. ......-..+.+.++.|++....+ 
T Consensus       273 ~~~~~~~----~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~  347 (414)
T PF02897_consen  273 SPREDGV----EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENG  347 (414)
T ss_dssp             EESSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETT
T ss_pred             eCCCCce----EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECC
Confidence            6422121    133445689999887654   688899988765   66 4432 122212334556678888765433 


Q ss_pred             -CeEEEEeCCCCceeEccccccccCceEEEE--e-CCeEEEE-ecCC--CeEEEEeccCC
Q 016552          306 -CTLSRYDEVMDDWKEVVKSDLLKGARHAAA--G-GGRVCAV-CENG--GGIVVVDVKAA  358 (387)
Q Consensus       306 -~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~-~g~i~v~-gg~~--~~i~~~d~~~~  358 (387)
                       ..|.+||.. ..|.......+..+......  . .+.+++. .+..  ..++.||+.++
T Consensus       348 ~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  348 SSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             ccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence             368999998 23333332222222222222  1 2444443 2322  57888888865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=81.47  E-value=26  Score=33.54  Aligned_cols=110  Identities=6%  Similarity=0.011  Sum_probs=62.3

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCc-eeEcccccccc
Q 016552          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDD-WKEVVKSDLLK  328 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~-W~~v~~~~~~~  328 (387)
                      -||-|+..|-.+..+.+||+.+..  .+...++..-...++.+. +|.-.+.+.+++.+..||....+ ...+.......
T Consensus       357 pDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~  434 (506)
T KOG0289|consen  357 PDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE  434 (506)
T ss_pred             CCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence            367777666555778899998877  444322211112234444 44444444556779999986653 11111111111


Q ss_pred             CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          329 GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       329 ~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      ......-..|..++++|..-.|+.++-.++    .|..
T Consensus       435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k----~W~~  468 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTK----SWTE  468 (506)
T ss_pred             ceeEEEcCCCCeEEeecceeEEEEEecccc----ccee
Confidence            122222344778888766777888887777    8983

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.40  E-value=44  Score=30.73  Aligned_cols=51  Identities=18%  Similarity=0.054  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCceeEccccc----------------cccCceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          307 TLSRYDEVMDDWKEVVKSD----------------LLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       307 ~l~~yd~~~~~W~~v~~~~----------------~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      .+..|+++.+....+....                ......++...++.-+++|+.+..|.++|.+.
T Consensus       172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds  238 (362)
T KOG0294|consen  172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS  238 (362)
T ss_pred             eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence            4667777776555444221                11224556666777888888888999999884

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.72  E-value=47  Score=30.58  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEeCCeE---EEE-eCCCCeEEEEeCCCCceeE
Q 016552          246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMDEEVL---YGI-DENSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~~~~l---y~~-~~~~~~l~~yd~~~~~W~~  320 (387)
                      ..++++++...+-|+.+..|.+||..++.  ++......  .+. .+......+   .++ +..+|.|.+|+.  +.|..
T Consensus        46 itavAVs~~~~aSGssDetI~IYDm~k~~--qlg~ll~H--agsitaL~F~~~~S~shLlS~sdDG~i~iw~~--~~W~~  119 (362)
T KOG0294|consen   46 ITALAVSGPYVASGSSDETIHIYDMRKRK--QLGILLSH--AGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--GSWEL  119 (362)
T ss_pred             eeEEEecceeEeccCCCCcEEEEeccchh--hhcceecc--ccceEEEEecCCcchhheeeecCCCcEEEEEc--CCeEE
Confidence            45778888866666667889999988763  12211110  111 111111111   233 335788999986  77988


Q ss_pred             ccccccccCc--eEEEEeCCeEEEEecC
Q 016552          321 VVKSDLLKGA--RHAAAGGGRVCAVCEN  346 (387)
Q Consensus       321 v~~~~~~~~~--~~~~~~~g~i~v~gg~  346 (387)
                      +..+....+.  ...+--.|+|-+-.|+
T Consensus       120 ~~slK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen  120 LKSLKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             eeeecccccccceeEecCCCceEEEEcC
Confidence            8776544332  2222234666664443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-10
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	6e-08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-10
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-05
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-05

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 49/263 (18%), Positives = 80/263 (30%), Gaps = 52/263 (19%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL--AATTHNFNPA 162
           ++P + TW  L        L +     +            + G L  +     + + N  
Sbjct: 44  YNPSNGTWLRL------ADLQVPRSGLA---------GCVVGGLLYAVGGRNNSPDGNTD 88

Query: 163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLM 222
            +    ++P+   W+    +  PR     G   G +Y    +G         SVE+++  
Sbjct: 89  SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYA---VGGSHGCIHHNSVERYEPE 145

Query: 223 NGEKNSRWEKTGELKDGRFS------REAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTW 275
             E    W     +   R           + AVG + G   L     AE   Y    N W
Sbjct: 146 RDE----WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL---NSAE--CYYPERNEW 196

Query: 276 DDMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDLLKGA 330
             +   M     G    +    +Y   G D      S  RYD   + W  V     +K  
Sbjct: 197 RMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP---MKHR 252

Query: 331 RHAAAGGGRVCAVCENGGGIVVV 353
           R A         +  + G I V+
Sbjct: 253 RSA-------LGITVHQGRIYVL 268

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 30/196 (15%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASG-IGSQFSSDVAKSVEKWDLMNGEK 226
            ++P   TW    +L  PR   A     G +Y   G   S   +  + +++ ++ M    
Sbjct: 43  AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-- 100

Query: 227 NSRWEKTGELKDGR--FSREAID----AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMR 279
             +W     +   R       ID    AV G  G +   +V   E   Y+   + W  + 
Sbjct: 101 --QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSV---E--RYEPERDEW-HLV 152

Query: 280 EGMVRGWRGPVAAMDEEVLY---GIDENSC--TLSRYDEVMDDWKEVVKSDLLKGARHAA 334
             M+    G   A+   +LY   G D  +   +   Y    ++W+ +  + +      A 
Sbjct: 153 APMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAMNTIRSGAG 210

Query: 335 AG--GGRVCAVCENGG 348
                  + A    GG
Sbjct: 211 VCVLHNCIYAA---GG 223

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 32/191 (16%), Positives = 50/191 (26%), Gaps = 39/191 (20%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            ++P    W     ++T R           +Y   G      ++   S E +        
Sbjct: 141 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD---GTNRLNSAECYYPERN--- 194

Query: 228 SRWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVANTWD---D 277
             W     +      R           +           +   E   YDV   TW     
Sbjct: 195 -EWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE--RYDVETETWTFVAP 248

Query: 278 MREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDLLKGARH 332
           M+    R   G +       +Y   G D ++   S   YD   D W EV +   +   R 
Sbjct: 249 MKHR--RSALG-ITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWSEVTR---MTSGRS 301

Query: 333 AAAGGGRVCAV 343
                    AV
Sbjct: 302 GVG-----VAV 307

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 50/264 (18%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL----AATTHNFN 160
           +DP ++           P  H              V LV+   ++ +         +  +
Sbjct: 18  YDPAANECYCASLSSQVPKNH--------------VSLVTKENQVFVAGGLFYNEDNKED 63

Query: 161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD 220
           P     L FD +   W   P L +PR     G +  ++YV  G   +       SV  +D
Sbjct: 64  PMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD 123

Query: 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV--------NVKGAEGAVYDVVA 272
            ++ +    W ++  L    +       +     + ++         +      VYD   
Sbjct: 124 RLSFK----WGESDPLPYVVYG---HTVLSHMDLVYVIGGKGSDRKCLNKMC--VYDPKK 174

Query: 273 NTWDDMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDLL 327
             W ++   M        A + +  +    G+ +   T S   Y    + W         
Sbjct: 175 FEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA---F 230

Query: 328 KGARH---AAAGGGRVCAVCENGG 348
              R      +  G + A+   GG
Sbjct: 231 PQERSSLSLVSLVGTLYAI---GG 251

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 169 FDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS 228
           +DP    W     + T R    A    G + VA+G+     + +  S E + + +     
Sbjct: 170 YDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVT---DTGLTSSAEVYSITDN---- 222

Query: 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLV------NVKGAEGA--------VYDVVANT 274
           +W         R S   +  V   G L  +        +  E           Y+     
Sbjct: 223 KWAPFEAFPQERSS---LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279

Query: 275 W 275
           W
Sbjct: 280 W 280

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 29/195 (14%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            +DP  + W+F P +   RR+ A+      +YV   IG         SVE  D    E  
Sbjct: 35  KYDPKTQEWSFLPSITRKRRYVASVSLHDRIYV---IGGYDGRSRLSSVECLDYTADEDG 91

Query: 228 SRWEKTGELKDGR--FSREAID----AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMRE 280
             W     +   R       +        G+ G     ++   E   YD   + W  M  
Sbjct: 92  -VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSM---E--RYDPNIDQW-SMLG 144

Query: 281 GMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDLLKGARHAAA 335
            M     G    +   V+Y   G D  +   S  +YD     W  V  + +      A  
Sbjct: 145 DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATKRSGAGV 202

Query: 336 G--GGRVCAVCENGG 348
                 +  V   GG
Sbjct: 203 ALLNDHIYVV---GG 214

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 48/262 (18%), Positives = 79/262 (30%), Gaps = 54/262 (20%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
           +DP +  W  L      P +     + +          VSL  +  +     ++    L+
Sbjct: 36  YDPKTQEWSFL------PSITRKRRYVA---------SVSLHDR--IYVIGGYDGRSRLS 78

Query: 165 RPLIFDPI---CRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL 221
                D        W     +   R    A      +YV    G    S    S+E++D 
Sbjct: 79  SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV---SGGFDGSRRHTSMERYDP 135

Query: 222 MNGEKNSRWEKTGELKDGRFS------REAIDAVG-WKGKLCLVNVKGAEGAVYDVVANT 274
              +    W   G+++  R           I  +G + G   L      E   YD     
Sbjct: 136 NIDQ----WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNIL---NSVE--KYDPHTGH 186

Query: 275 WDDMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDLLKG 329
           W ++   M     G   A+  + +Y   G D  +   S   Y+   D W  V     +  
Sbjct: 187 WTNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS---MTT 242

Query: 330 ARH---AAAGGGRVCAVCENGG 348
            R    A    GR+ A+    G
Sbjct: 243 PRCYVGATVLRGRLYAI---AG 261

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 19/114 (16%)

Query: 169 FDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS 228
           +DP    WT    + T R           +YV  G      +    SVE +++       
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD---GTAHLSSVEAYNIRTDS--- 233

Query: 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVANTW 275
            W     +   R     + A   +G+L  +        +   E   YD + ++W
Sbjct: 234 -WTTVTSMTTPRCY---VGATVLRGRLYAIAGYDGNSLLSSIE--CYDPIIDSW 281

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            ++    +WT    + TPR +  A   RG +Y  +G           S+E +D +     
Sbjct: 226 AYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS---SIECYDPIIDS-- 280

Query: 228 SRWEKTGELKDGRFS 242
             WE    +   R  
Sbjct: 281 --WEVVTSMGTQRCD 293

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 46/268 (17%), Positives = 79/268 (29%), Gaps = 62/268 (23%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
           F+P   +W  +   P +                     V     + +L     +    + 
Sbjct: 29  FNPKDYSWTDIR-CPFEKRRD--------------AACVFWDNVVYILGG---SQLFPIK 70

Query: 165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224
           R   ++ +  +W       TPR   AA  + G +Y  SG GS+  +      E +D    
Sbjct: 71  RMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIY-TSG-GSEVGNSALYLFECYDTRTE 128

Query: 225 EKNSRWEKTGELKDGRFS------REAIDAVG-----WKGKLCLVNVKGAEGAVYDVVAN 273
                W     +   R S         I   G           L + +     VYD    
Sbjct: 129 S----WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCE-----VYDPATE 179

Query: 274 TWD---DMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSD 325
           TW     M E   R   G +  +  + ++   G +      +   YD  +++WK V    
Sbjct: 180 TWTELCPMIEA--RKNHG-LVFVK-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP-- 233

Query: 326 LLKGARHAAAGGGRVCAVCENGGGIVVV 353
            +              AV   G  + V+
Sbjct: 234 -MPWKGVTVK----CAAV---GSIVYVL 253

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 24/204 (11%), Positives = 55/204 (26%), Gaps = 45/204 (22%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
           +D  + +W   P       +                 +V  +G +          N    
Sbjct: 123 YDTRTESWHTKP------SMLTQRCSHG---------MVEANGLI--YVCGGSLGNNVSG 165

Query: 165 RPL----IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD 220
           R L    ++DP   TWT    ++  R+       +  ++   G           +VE +D
Sbjct: 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN---GLGGLDNVEYYD 222

Query: 221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVAN 273
           +   E    W+    +    +    +        + ++        +       Y+   +
Sbjct: 223 IKLNE----WKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHIL--EYNTETD 273

Query: 274 TW---DDMREGMVRGWRGPVAAMD 294
            W     +R          +  +D
Sbjct: 274 KWVANSKVRAF--PVTSCLICVVD 295

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 28/171 (16%), Positives = 48/171 (28%), Gaps = 31/171 (18%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            F+P   +WT        RR  A       VY+  G            ++ ++++     
Sbjct: 28  YFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIK----RMDCYNVVKD--- 80

Query: 228 SRWEKTGELKDGR--FSREAID----AVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMR 279
             W         R   +  A +      G    G   L      E   YD    +W   +
Sbjct: 81  -SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLF---E--CYDTRTESW-HTK 133

Query: 280 EGMVRGWRGPVAAMDEEVLY---GIDENSCTLS------RYDEVMDDWKEV 321
             M+             ++Y   G   N+ +         YD   + W E+
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL 184

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 28/263 (10%), Positives = 56/263 (21%), Gaps = 46/263 (17%)

Query: 95  SSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL-- 152
           S+ T  +          W  L   P  P             R+       + G L +   
Sbjct: 28  SAGTAWYKLDTQAKDKKWTALAAFPGGP-------------RDQAT-SAFIDGNLYVFGG 73

Query: 153 -AATTHNFNPALTRPLIFDPICRTWT-FGPELVTPRRWCAAGCSRGAVYVASGIGSQFSS 210
               +            ++P   +W                    G  YV  G+     +
Sbjct: 74  IGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFN 133

Query: 211 DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV 270
                 E  +    +         ++    F +   +   +   L            +D 
Sbjct: 134 G---YFEDLNEAGKD----STAIDKINAHYFDK-KAEDYFFNKFLL----------SFDP 175

Query: 271 VANTWDDMREGMVRGWRGPVAAMDEEVLY--------GIDENSCTLSRYDEVMDDWKEVV 322
               W    E    G  G       +  +        G+  ++     +      W ++ 
Sbjct: 176 STQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA 235

Query: 323 KSDLLKGARHAAAG--GGRVCAV 343
                 G     AG     +   
Sbjct: 236 PVSSPDGVAGGFAGISNDSLIFA 258

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 38/276 (13%), Positives = 78/276 (28%), Gaps = 59/276 (21%)

Query: 105 FDPVSSTWDPLPRPPPDP-----------PLHLI--LHHPSFLS--------RNLPVQLV 143
           ++P +++W  L    P               ++   ++   F                + 
Sbjct: 91  YNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID 150

Query: 144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVAS 202
            ++       A  + FN  L   L FDP  + W++  E        AA  +     ++ +
Sbjct: 151 KINAHYFDKKAEDYFFNKFL---LSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLIN 207

Query: 203 GIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG 262
           G     +    ++   ++L     N +W K   +           A      L      G
Sbjct: 208 G----EAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD-GVAGGFAGISNDSLIFAGGAG 262

Query: 263 AEGA----------------------VYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY- 299
            +G+                      ++      WD   E + +G    V+      L  
Sbjct: 263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE-LSQGRAYGVSLPWNNSLLI 321

Query: 300 --GIDENSCTLSR-YDEVMDDWKEVVKSDLLKGARH 332
             G       ++      + D K  V++  L+   H
Sbjct: 322 IGGETAGGKAVTDSVLITVKDNKVTVQN--LEHHHH 355

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 26/159 (16%)

Query: 180 PELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG 239
           PE   P +          VY+  G           +  K D     K+ +W        G
Sbjct: 4   PETPVPFKSGTGAIDNDTVYIGLGSAGT-------AWYKLDTQA--KDKKWTALAAFPGG 54

Query: 240 RFSREAIDAVGWKGKLCLV--NVKGAEGA--------VYDVVANTWDDMREGMVRGWRGP 289
              R+   +    G L +     K +EG          Y+   N+W  +      G  G 
Sbjct: 55  P--RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH 112

Query: 290 VAAMDEEVLY---GIDENSC--TLSRYDEVMDDWKEVVK 323
           V  +     Y   G+++N         +E   D   + K
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 44/265 (16%), Positives = 82/265 (30%), Gaps = 53/265 (20%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILL----AATTHNFN 160
           +DP+ +           P      +H S         +V+   ++ ++        +   
Sbjct: 29  YDPMENECYLTALAEQIP-----RNHSS---------IVTQQNQVYVVGGLYVDEENKDQ 74

Query: 161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD 220
           P  +     D +   W   P L + R     G     +YV +G   Q +     SV  +D
Sbjct: 75  PLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ-TEASLDSVLCYD 133

Query: 221 LMNGEKNSRWEKTGELKDGRFS------REAIDAVG--WKGKLCLVNVKGAEGAVYDVVA 272
            +  +    W +   L    +          I  +G     K C   V      +Y+   
Sbjct: 134 PVAAK----WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV---F--IYNPKK 184

Query: 273 NTWDDMRE-GMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDL 326
             W D+      R   G VA      +    G+ E+  + S   +D   + W+ + +   
Sbjct: 185 GDWKDLAPMKTPRSMFG-VAIHK-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE--- 239

Query: 327 LKGARH---AAAGGGRVCAVCENGG 348
               R      +  G + A+   GG
Sbjct: 240 FPQERSSISLVSLAGSLYAI---GG 261

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 28/123 (22%)

Query: 169 FDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS 228
           ++P    W     + TPR        +G + +A G+       ++ SVE +DL   +   
Sbjct: 180 YNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVT---EDGLSASVEAFDLKTNK--- 233

Query: 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLV----------------NVKGAEGAVYDVVA 272
            WE   E    R S   I  V   G L  +                 V       Y+   
Sbjct: 234 -WEVMTEFPQERSS---ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIW--KYEDDK 287

Query: 273 NTW 275
             W
Sbjct: 288 KEW 290

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 58/265 (21%)

Query: 85  LYAL----FSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPV 140
           +Y +       ++       + F  D VSS W  LP      PL                
Sbjct: 59  VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP------PLPSARCLFG-------- 104

Query: 141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYV 200
            L  +  K+ ++A        +L   L +DP+   W+    L             G +Y 
Sbjct: 105 -LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163

Query: 201 ASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS------REAIDAV-GWKG 253
             G            V  ++   G     W+    +K  R        +  I    G   
Sbjct: 164 LGGKTD--DKKCTNRVFIYNPKKG----DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE 217

Query: 254 KLCLVNVKGAEGAVYDVVANTWD---DMREGMVRGWRGPVAAMDEEVLY---GIDENSCT 307
                +V   E   +D+  N W+   +  +   R     + ++    LY   G       
Sbjct: 218 DGLSASV---E--AFDLKTNKWEVMTEFPQE--RSSIS-LVSLAGS-LYAIGGFAMIQLE 268

Query: 308 LS-----------RYDEVMDDWKEV 321
                        +Y++   +W  +
Sbjct: 269 SKEFAPTEVNDIWKYEDDKKEWAGM 293

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 53/266 (19%), Positives = 83/266 (31%), Gaps = 60/266 (22%)

Query: 105 FDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALT 164
           +D     W  +        L                 +V ++G   + A    N +  + 
Sbjct: 35  YDFKEERWHQV------AELPSRRCRAG---------MVYMAGL--VFAVGGFNGSLRVR 77

Query: 165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG 224
               +DP+   WT    +   R    A    G +Y    +G    S    SVE +++ + 
Sbjct: 78  TVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYA---VGGFDGSTGLSSVEAYNIKSN 134

Query: 225 EKNSRWEKTGELKDGRFS------REAIDAVG---WKGKLCLVNVKGAEGAVYDVVANTW 275
           E    W     +   R S         + AVG      + CL  V   E   Y+   N W
Sbjct: 135 E----WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTV---E--CYNATTNEW 185

Query: 276 D---DMREGMVRGWRGPVAAMDEEVLY---GIDENSCTLS--RYDEVMDDWKEVVKSDLL 327
               +M     R   G V  ++  +LY   G D      S   YD   + W++V     +
Sbjct: 186 TYIAEMSTR--RSGAG-VGVLN-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD---M 238

Query: 328 KGARHAAAGGGRVCAVCENGGGIVVV 353
              R           VC   G + VV
Sbjct: 239 NMCRRN-------AGVCAVNGLLYVV 257

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 34/197 (17%)

Query: 168 IFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN 227
            +D     W    EL + R         G V+   G           +V+ +D +     
Sbjct: 34  CYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVR---TVDSYDPVKD--- 87

Query: 228 SRWEKTGELKDGR--FSREAID----AV-GWKGKLCLVNVKGAEGAVYDVVANTWDDMRE 280
            +W     ++D R       ++    AV G+ G   L +V   E   Y++ +N W     
Sbjct: 88  -QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSV---E--AYNIKSNEW-FHVA 140

Query: 281 GMVRGWRGPVAAMDEEVLY---GIDENSC----TLSRYDEVMDDWKEVVKSDLLKGARHA 333
            M          +   +LY   G D  S     T+  Y+   ++W  +  +++      A
Sbjct: 141 PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMSTRRSGA 198

Query: 334 AAG--GGRVCAVCENGG 348
             G     + AV   GG
Sbjct: 199 GVGVLNNLLYAV---GG 212

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 20/134 (14%)

Query: 169 FDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNS 228
           ++     WT+  E+ T R     G     +Y   G        V KSVE +D        
Sbjct: 178 YNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD---GPLVRKSVEVYDPTTNA--- 231

Query: 229 RWEKTGELKDGRFSREAIDAVGWKGKLCLV-------NVKGAEGAVYDVVANTWDDMREG 281
            W +  ++      R         G L +V       N+   E   Y+   + W  +   
Sbjct: 232 -WRQVADMN---MCRRNAGVCAVNGLLYVVGGDDGSCNLASVE--YYNPTTDKWTVVSSC 285

Query: 282 MVRGWRGP-VAAMD 294
           M  G     V  +D
Sbjct: 286 MSTGRSYAGVTVID 299

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 9   SSKRQKLTQTLTTQPLAQDQDKAQDDDGDDHQPLLPGLPDHIAHLCLSHVHPSILHN--- 65
           S + Q            +   +A++++  +    L  LP+ +    L+ +  + L     
Sbjct: 17  SPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACR 76

Query: 66  -VCHSWRRLIYSPSFPPFLSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPL 124
            VC  W+ L+                P+ ++     H   F  +S     L R P     
Sbjct: 77  LVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSKRRRNLLRNPCGEED 136

Query: 125 H 125
            
Sbjct: 137 L 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.25
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.11
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.62
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.32
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.27
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.26
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.25
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.2
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.17
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.11
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.02
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.02
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.01
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.99
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.97
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.9
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.87
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.87
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.85
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.84
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.81
3jro_A	753	Fusion protein of protein transport protein SEC13	97.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.77
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.77
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.77
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.76
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.75
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.74
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.73
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.72
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.71
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.71
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.69
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.68
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.67
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.65
2pm7_B	297	Protein transport protein SEC13, protein transport	97.64
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.59
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.59
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.58
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.56
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.56
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.55
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.54
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.54
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.53
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.52
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.5
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.5
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.5
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.48
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.48
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.47
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.46
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.44
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.43
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.37
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.36
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.35
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.35
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.31
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.29
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.29
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.29
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.29
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.27
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.26
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.25
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.24
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.2
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.18
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.18
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.18
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.17
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.16
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.15
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.15
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.11
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.11
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.1
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.1
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.09
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.09
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.08
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.06
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.05
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.05
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.04
3jro_A	753	Fusion protein of protein transport protein SEC13	97.03
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.02
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.01
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.99
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.98
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.91
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.9
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	96.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.89
2pm7_B	297	Protein transport protein SEC13, protein transport	96.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.86
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.84
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.83
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.83
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.82
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.79
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.78
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.78
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.78
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.77
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.77
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.74
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.73
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.66
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.63
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.58
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.56
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.54
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.53
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.5
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.48
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.47
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.45
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.44
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.39
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.39
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.38
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.38
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.33
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.19
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.17
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.17
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.16
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	96.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.03
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.01
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.93
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.9
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.85
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.78
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.77
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.76
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.63
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	95.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.6
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.59
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.58
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.57
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.52
3ott_A	758	Two-component system sensor histidine kinase; beta	95.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.48
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	95.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.25
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.24
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.24
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.18
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.04
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.79
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	94.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.79
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	94.66
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.48
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	94.17
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.12
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	94.1
3ott_A	758	Two-component system sensor histidine kinase; beta	94.07
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.01
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	93.99
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	93.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	93.65
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	93.51
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	93.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.33
1k32_A	1045	Tricorn protease; protein degradation, substrate g	92.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	92.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	92.66
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	92.48
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	91.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	91.82
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	91.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	91.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	91.4
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	91.07
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	90.8
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	90.79
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	90.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	90.13
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	90.02
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.9
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	88.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	88.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	88.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	88.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	88.43
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	87.48
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	87.26
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	86.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	86.29
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	85.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	85.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	85.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	85.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.41
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	83.58
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	83.56
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	81.75
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	80.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	80.58
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	80.24

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=280.78  Aligned_cols=253  Identities=17%  Similarity=0.282  Sum_probs=215.2

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++.   .......+++||+.+++|..++.+|.+               |.++++++++++||++||...  ....
T Consensus        17 ~i~v~GG~---~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~~--~~~~   76 (302)
T 2xn4_A           17 LMVVVGGQ---APKAIRSVECYDFKEERWHQVAELPSR---------------RCRAGMVYMAGLVFAVGGFNG--SLRV   76 (302)
T ss_dssp             EEEEECCB---SSSBCCCEEEEETTTTEEEEECCCSSC---------------CBSCEEEEETTEEEEESCBCS--SSBC
T ss_pred             EEEEECCC---CCCCCCcEEEEcCcCCcEeEcccCCcc---------------cccceEEEECCEEEEEeCcCC--Cccc
Confidence            46777763   112233589999999999999887763               556888999999999999765  3456


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      +++++||+.+++|+++++||.+|..+++++++++|||+||.+.   ...++++++||+.+++    |+.++++|.++.. 
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~-  148 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNE----WFHVAPMNTRRSS-  148 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECS---SCEEEEEEEEETTTTE----EEEECCCSSCCBS-
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCC---CccCceEEEEeCCCCe----EeecCCCCCcccC-
Confidence            8899999999999999999999999999999999999999865   2456789999999999    9999999977654 


Q ss_pred             cceEEEEECCEEEEEeeeC-------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEE
Q 016552          244 EAIDAVGWKGKLCLVNVKG-------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRY  311 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~-------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~y  311 (387)
                        +.+++++++||++||..       .++++||+.+++|+.++. ++..+..+++++.+++||++||.+     ..+++|
T Consensus       149 --~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y  225 (302)
T 2xn4_A          149 --VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE-MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY  225 (302)
T ss_dssp             --CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEE
T ss_pred             --ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC-CccccccccEEEECCEEEEECCCCCCcccceEEEE
Confidence              77889999999999863       679999999999999976 777888888999999999999853     469999


Q ss_pred             eCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE---eCCCC
Q 016552          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV---DTPLG  371 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~---~~p~~  371 (387)
                      |+++++|+.+..+|..+..+.++.++++||++||.+     ..+++||+.+.    +|..   .+|..
T Consensus       226 d~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~  289 (302)
T 2xn4_A          226 DPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD----KWTVVSSCMSTG  289 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT----EEEECSSCCSSC
T ss_pred             eCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC----eEEECCcccCcc
Confidence            999999999998888888888999999999999853     56999999988    9996   35544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.8e-36  Score=280.77  Aligned_cols=255  Identities=16%  Similarity=0.231  Sum_probs=215.9

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccC--CCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTH--NFNP  161 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~  161 (387)
                      .+|++++.   .......+++||+.+++|..++.+|.+               |.++++++++++||++||...  ....
T Consensus        26 ~i~v~GG~---~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~~~~~~~~   87 (308)
T 1zgk_A           26 LIYTAGGY---FRQSLSYLEAYNPSNGTWLRLADLQVP---------------RSGLAGCVVGGLLYAVGGRNNSPDGNT   87 (308)
T ss_dssp             CEEEECCB---SSSBCCCEEEEETTTTEEEECCCCSSC---------------CBSCEEEEETTEEEEECCEEEETTEEE
T ss_pred             EEEEEeCc---CCCCcceEEEEcCCCCeEeECCCCCcc---------------cccceEEEECCEEEEECCCcCCCCCCe
Confidence            47777763   122334589999999999999887763               556888999999999999731  1134


Q ss_pred             CCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       162 ~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+++++||+.+++|+++++||.+|..+++++++++|||+||...   ...++++++||+.+++    |+.++++|.++.
T Consensus        88 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd~~~~~----W~~~~~~p~~r~  160 (308)
T 1zgk_A           88 DSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDE----WHLVAPMLTRRI  160 (308)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTE----EEECCCCSSCCB
T ss_pred             ecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC---CcccccEEEECCCCCe----EeECCCCCcccc
Confidence            567899999999999999999999999999999999999999865   2356789999999999    999999997765


Q ss_pred             cccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEE
Q 016552          242 SREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRY  311 (387)
Q Consensus       242 ~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~y  311 (387)
                      .   +++++++++||++||..     +++++||+.+++|+.++. ++..+..+++++.+++||++||..     ..+++|
T Consensus       161 ~---~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          161 G---VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             S---CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred             c---eEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC-CCCccccceEEEECCEEEEEeCCCCCCccceEEEE
Confidence            4   78888999999999965     679999999999999986 777888888899999999999853     469999


Q ss_pred             eCCCCceeEccccccccCceEEEEeCCeEEEEecC-----CCeEEEEeccCCCCCCceEE--eCCCC
Q 016552          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~-----~~~i~~~d~~~~~~~~~W~~--~~p~~  371 (387)
                      |+++++|+++..+|..+..++++.++++|||+||.     ..++++||+.+.    +|..  .+|..
T Consensus       237 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~  299 (308)
T 1zgk_A          237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD----TWSEVTRMTSG  299 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT----EEEEEEECSSC
T ss_pred             eCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC----EEeecCCCCCC
Confidence            99999999999888888888899999999999984     367999999987    9995  56643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=279.25  Aligned_cols=246  Identities=19%  Similarity=0.267  Sum_probs=214.0

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|.+++.     .....+++||+.+++|..++++|.+               |.++++++++++||++||..   ....
T Consensus        13 ~l~~~GG~-----~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~---~~~~   69 (306)
T 3ii7_A           13 YRIALFGG-----SQPQSCRYFNPKDYSWTDIRCPFEK---------------RRDAACVFWDNVVYILGGSQ---LFPI   69 (306)
T ss_dssp             EEEEEECC-----SSTTSEEEEETTTTEEEECCCCSCC---------------CBSCEEEEETTEEEEECCBS---SSBC
T ss_pred             eEEEEeCC-----CCCceEEEecCCCCCEecCCCCCcc---------------cceeEEEEECCEEEEEeCCC---CCCc
Confidence            36777753     2245689999999999999988763               56689999999999999976   3567


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      +++++||+.+++|++++++|.+|..+++++++++|||+||.+.  .....+++++||+.+++    |+.++++|.++.. 
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~-  142 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV--GNSALYLFECYDTRTES----WHTKPSMLTQRCS-  142 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBT--TBSCCCCEEEEETTTTE----EEEECCCSSCCBS-
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCC--CCcEeeeEEEEeCCCCc----eEeCCCCcCCcce-
Confidence            8899999999999999999999999999999999999999864  23467899999999999    9999999987754 


Q ss_pred             cceEEEEECCEEEEEeeeC---------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEE
Q 016552          244 EAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLS  309 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~  309 (387)
                        +.+++++++||++||..         +++++||+++++|+.++. ++..+..+++++.+++||++||..     ..++
T Consensus       143 --~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~  219 (306)
T 3ii7_A          143 --HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-MIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE  219 (306)
T ss_dssp             --CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCEETTEEBCCEE
T ss_pred             --eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-ccchhhcceEEEECCEEEEEeCCCCCCCCceEE
Confidence              78889999999999853         569999999999999986 777888889999999999999842     4699


Q ss_pred             EEeCCCCceeEccccccccCceEEEEeCCeEEEEecC-----CCeEEEEeccCCCCCCceEE
Q 016552          310 RYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       310 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~-----~~~i~~~d~~~~~~~~~W~~  366 (387)
                      +||+++++|+.+..+|..+..+.++.++++|||+||.     ...+++||+.+.    +|..
T Consensus       220 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~----~W~~  277 (306)
T 3ii7_A          220 YYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD----KWVA  277 (306)
T ss_dssp             EEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT----EEEE
T ss_pred             EeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC----eEEe
Confidence            9999999999999988888888899999999999984     268999999987    9995

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=277.31  Aligned_cols=253  Identities=18%  Similarity=0.244  Sum_probs=215.0

Q ss_pred             eEEeecC-CCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCC
Q 016552           84 SLYALFS-PKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPA  162 (387)
Q Consensus        84 ~l~~~~~-~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  162 (387)
                      .+|++++ ..  .......+++||+.+++|..++.+|.+               |.+++++..+++||++||...  ...
T Consensus        16 ~i~~~GG~~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~l~v~GG~~~--~~~   76 (301)
T 2vpj_A           16 VLLVVGGFGS--QQSPIDVVEKYDPKTQEWSFLPSITRK---------------RRYVASVSLHDRIYVIGGYDG--RSR   76 (301)
T ss_dssp             EEEEECCEET--TTEECCCEEEEETTTTEEEECCCCSSC---------------CBSCEEEEETTEEEEECCBCS--SCB
T ss_pred             EEEEEeCccC--CCcceeEEEEEcCCCCeEEeCCCCChh---------------hccccEEEECCEEEEEcCCCC--Ccc
Confidence            4677765 21  112233589999999999999987762               556889999999999999764  456


Q ss_pred             CCccEEEeccCCc---eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552          163 LTRPLIFDPICRT---WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       163 ~~~~~vyd~~t~~---W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~  239 (387)
                      .+++++||+.+++   |++++++|.+|..++++..+++||++||...   ....+++++||+.+++    |+.++++|.+
T Consensus        77 ~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~----W~~~~~~p~~  149 (301)
T 2vpj_A           77 LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQ----WSMLGDMQTA  149 (301)
T ss_dssp             CCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTE----EEEEEECSSC
T ss_pred             CceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCC---CcccceEEEEcCCCCe----EEECCCCCCC
Confidence            7889999999999   9999999999999999999999999999875   2346799999999999    9999999977


Q ss_pred             CccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEE
Q 016552          240 RFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLS  309 (387)
Q Consensus       240 ~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~  309 (387)
                      +..   +.+++++++||++||..     +++++||+.+++|+.++. ++..+..+++++.+++||++||.+     ..++
T Consensus       150 r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~  225 (301)
T 2vpj_A          150 REG---AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVE  225 (301)
T ss_dssp             CBS---CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred             ccc---ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC-CCcccccceEEEECCEEEEEeCCCCCcccceEE
Confidence            654   77888999999999865     789999999999999976 677788888999999999999853     4699


Q ss_pred             EEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE--eCCC
Q 016552          310 RYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV--DTPL  370 (387)
Q Consensus       310 ~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~--~~p~  370 (387)
                      +||+++++|+++..+|..+..+.++.++|+||++||.+     ..+++||+.+.    +|..  .+|.
T Consensus       226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~~~  289 (301)
T 2vpj_A          226 AYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID----SWEVVTSMGT  289 (301)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT----EEEEEEEEEE
T ss_pred             EEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC----eEEEcCCCCc
Confidence            99999999999998888888888899999999999853     57899999987    8995  5554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=5e-36  Score=278.59  Aligned_cols=241  Identities=15%  Similarity=0.166  Sum_probs=203.9

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccC----CCCCCCCccEEEeccCCce
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTH----NFNPALTRPLIFDPICRTW  176 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~----~~~~~~~~~~vyd~~t~~W  176 (387)
                      .+++|||.+++|.. +++|.+             ..|.++++++.+++||++||...    ......+++++||+.+++|
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p-------------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQ-------------VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCC-------------SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             ceEEECCCCCeEec-CCCCCC-------------CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            58899999999986 555541             12667888899999999999631    1122234589999999999


Q ss_pred             eeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEE
Q 016552          177 TFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLC  256 (387)
Q Consensus       177 ~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~ly  256 (387)
                      +++++||.+|..+++++++++|||+||.+........+++++||+.+++    |+.++++|.+|..   +++++++++||
T Consensus        80 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~---~~~~~~~~~iy  152 (315)
T 4asc_A           80 LGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK----WGESDPLPYVVYG---HTVLSHMDLVY  152 (315)
T ss_dssp             EECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE----EEECCCCSSCCBS---CEEEEETTEEE
T ss_pred             EECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc----EeECCCCCCcccc---eeEEEECCEEE
Confidence            9999999999999999999999999997532123567899999999999    9999999987754   88889999999


Q ss_pred             EEeeeC------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccc
Q 016552          257 LVNVKG------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSD  325 (387)
Q Consensus       257 v~gg~~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~  325 (387)
                      ++||..      +++++||+.+++|+.++. ++.++..+++++.+++||++||..     ..+++||+++++|+.+..+|
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred             EEeCCCCCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence            999972      789999999999999987 777888889999999999999853     25999999999999999988


Q ss_pred             cccCceEEEEeCCeEEEEecCC--------------CeEEEEeccCCCCCCceEEe
Q 016552          326 LLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       326 ~~~~~~~~~~~~g~i~v~gg~~--------------~~i~~~d~~~~~~~~~W~~~  367 (387)
                      ..+..++++.++++||++||..              .++++||+.+.    +|+..
T Consensus       232 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~~  283 (315)
T 4asc_A          232 QERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK----KWEGV  283 (315)
T ss_dssp             SCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT----EEEEE
T ss_pred             CcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC----hhhhh
Confidence            8888888999999999999852              46899999987    99963

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=8e-35  Score=270.80  Aligned_cols=242  Identities=13%  Similarity=0.174  Sum_probs=201.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC----CCCCCccEEEeccCCce
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF----NPALTRPLIFDPICRTW  176 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~~~~~~vyd~~t~~W  176 (387)
                      ..++|||.+++|.. ++++.+             ..|.+++++..+++||++||.....    ....+++++||+.+++|
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~-------------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   90 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQ-------------IPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW   90 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTT-------------SCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred             ceEEECCCCCceec-ccCCcc-------------CCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence            37899999999988 334431             1255688888999999999953211    11223489999999999


Q ss_pred             eeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEE
Q 016552          177 TFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLC  256 (387)
Q Consensus       177 ~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~ly  256 (387)
                      +++++||.+|..+++++++++|||+||.... .....+++++||+.+++    |+.++++|.++..   +++++++++||
T Consensus        91 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~---~~~~~~~~~iy  162 (318)
T 2woz_A           91 VGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ-TEASLDSVLCYDPVAAK----WSEVKNLPIKVYG---HNVISHNGMIY  162 (318)
T ss_dssp             EECSCBSSCBCSCEEEEETTEEEEEEEEBTT-TCCEEEEEEEEETTTTE----EEEECCCSSCEES---CEEEEETTEEE
T ss_pred             EECCCCCccccccceEEECCEEEEEcCccCC-CCcccceEEEEeCCCCC----EeECCCCCCcccc---cEEEEECCEEE
Confidence            9999999999999999999999999998631 23456789999999999    9999999977654   77888999999


Q ss_pred             EEeeeC------CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccc
Q 016552          257 LVNVKG------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSD  325 (387)
Q Consensus       257 v~gg~~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~  325 (387)
                      ++||..      +++++||+.+++|+.++. ++..+..+++++.+++||++||..     ..+++||+++++|+.+..+|
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  241 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP  241 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS
T ss_pred             EEcCCCCCCCccceEEEEcCCCCEEEECCC-CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC
Confidence            999963      679999999999999986 777788888899999999999742     35899999999999999988


Q ss_pred             cccCceEEEEeCCeEEEEecCC--------------CeEEEEeccCCCCCCceEEeCC
Q 016552          326 LLKGARHAAAGGGRVCAVCENG--------------GGIVVVDVKAAAAPTIFVVDTP  369 (387)
Q Consensus       326 ~~~~~~~~~~~~g~i~v~gg~~--------------~~i~~~d~~~~~~~~~W~~~~p  369 (387)
                      ..+..+.++.++++||++||..              .++++||+.+.    +|...+|
T Consensus       242 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~----~W~~~~~  295 (318)
T 2woz_A          242 QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK----EWAGMLK  295 (318)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT----EEEEEES
T ss_pred             CcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC----Eehhhcc
Confidence            8888888999999999999842              57999999987    9996444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=260.39  Aligned_cols=218  Identities=17%  Similarity=0.228  Sum_probs=188.1

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccC-CCCCCCCccEEEeccCCceeeC
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTH-NFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~vyd~~t~~W~~l  179 (387)
                      .+++||+.+++|..++++|.+               |.++++++++++||++||... ......+++++||+.+++|+++
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~  132 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSP---------------RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES  132 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSC---------------EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC
T ss_pred             ceEEecCCCCeEEECCCCCcc---------------hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC
Confidence            388999999999999988763               566899999999999999753 2245678899999999999999


Q ss_pred             CCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEe
Q 016552          180 PELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVN  259 (387)
Q Consensus       180 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~g  259 (387)
                      +++|.+|..+++++.+++|||+||...  .....+++++||+.+++    |+.++++|.+|..   +.+++++++||++|
T Consensus       133 ~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~---~~~~~~~~~iyv~G  203 (315)
T 4asc_A          133 DPLPYVVYGHTVLSHMDLVYVIGGKGS--DRKCLNKMCVYDPKKFE----WKELAPMQTARSL---FGATVHDGRIIVAA  203 (315)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCT--TSCBCCCEEEEETTTTE----EEECCCCSSCCBS---CEEEEETTEEEEEE
T ss_pred             CCCCCcccceeEEEECCEEEEEeCCCC--CCcccceEEEEeCCCCe----EEECCCCCCchhc---eEEEEECCEEEEEe
Confidence            999999999999999999999999854  34567899999999999    9999999977654   78889999999999


Q ss_pred             eeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceeE
Q 016552          260 VKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------------CTLSRYDEVMDDWKE  320 (387)
Q Consensus       260 g~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--------------~~l~~yd~~~~~W~~  320 (387)
                      |..     +++++||+++++|+.++. ++..+..+++++.+++||++||.+              ..+++||+++++|++
T Consensus       204 G~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          204 GVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             ccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence            975     579999999999999987 778888888999999999999842              248999999999999


Q ss_pred             ccccccccCceEEEEeCCeEEEEec
Q 016552          321 VVKSDLLKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       321 v~~~~~~~~~~~~~~~~g~i~v~gg  345 (387)
                      +  ++..+..++++.++++||++..
T Consensus       283 ~--~~~~r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          283 V--LREIAYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             E--ESCSSCCSSCEEEEEEECGGGS
T ss_pred             h--ccCCcCccceEEeCCEEEEEEe
Confidence            9  4445556777889999999854

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=8.3e-33  Score=261.22  Aligned_cols=252  Identities=13%  Similarity=0.166  Sum_probs=197.5

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCC--CCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecc-c--CC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPV--SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAAT-T--HN  158 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~-~--~~  158 (387)
                      .+|++++.      ....+++||+.  +++|..++++|..|              |.++++++++++||++||. .  ..
T Consensus        21 ~iyv~GG~------~~~~~~~~d~~~~~~~W~~~~~~p~~~--------------R~~~~~~~~~~~lyv~GG~~~~~~~   80 (357)
T 2uvk_A           21 TVYIGLGS------AGTAWYKLDTQAKDKKWTALAAFPGGP--------------RDQATSAFIDGNLYVFGGIGKNSEG   80 (357)
T ss_dssp             EEEEECGG------GTTCEEEEETTSSSCCEEECCCCTTCC--------------CBSCEEEEETTEEEEECCEEECTTS
T ss_pred             EEEEEeCc------CCCeEEEEccccCCCCeeECCCCCCCc--------------CccceEEEECCEEEEEcCCCCCCCc
Confidence            47777763      12368899998  48999999988311              5668999999999999997 3  11


Q ss_pred             CCCCCCccEEEeccCCceeeCCCCC-CCCcceeEEEeCCEEEEEecCCCCC-C---------------------------
Q 016552          159 FNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGCSRGAVYVASGIGSQF-S---------------------------  209 (387)
Q Consensus       159 ~~~~~~~~~vyd~~t~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~-~---------------------------  209 (387)
                      .....+++++||+.+++|+++++|+ .+|..+++++.+++|||+||.+... +                           
T Consensus        81 ~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (357)
T 2uvk_A           81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK  160 (357)
T ss_dssp             CEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSC
T ss_pred             cceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccc
Confidence            2345788999999999999999998 8999998889999999999985410 0                           


Q ss_pred             ---CCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEEC--CCCceeec
Q 016552          210 ---SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDV--VANTWDDM  278 (387)
Q Consensus       210 ---~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~--~~~~W~~~  278 (387)
                         ...++.+++||+.+++    |+.++++|.++.  ..+++++++++||++||..      .++++||+  ++++|+.+
T Consensus       161 ~~~~~~~~~v~~yd~~~~~----W~~~~~~p~~~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~  234 (357)
T 2uvk_A          161 AEDYFFNKFLLSFDPSTQQ----WSYAGESPWYGT--AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL  234 (357)
T ss_dssp             GGGGCCCCEEEEEETTTTE----EEEEEECSSCCC--BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEEC
T ss_pred             ccccCCcccEEEEeCCCCc----EEECCCCCCCCc--ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec
Confidence               0135799999999999    999999886542  2367888999999999863      67888986  99999999


Q ss_pred             cccccc--CCCCcEEEEeCCeEEEEeCCC----------------------CeEEEEeCCCCceeEccccccccCceEEE
Q 016552          279 REGMVR--GWRGPVAAMDEEVLYGIDENS----------------------CTLSRYDEVMDDWKEVVKSDLLKGARHAA  334 (387)
Q Consensus       279 ~~~~~~--~~~~~~~~~~~~~ly~~~~~~----------------------~~l~~yd~~~~~W~~v~~~~~~~~~~~~~  334 (387)
                      +. ++.  .+.++++++.+++||++||.+                      ..+++||+++++|+++..+|..+..++++
T Consensus       235 ~~-~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  313 (357)
T 2uvk_A          235 AP-VSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL  313 (357)
T ss_dssp             CC-SSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE
T ss_pred             CC-CCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE
Confidence            76 333  344677888999999999831                      25889999999999999988888888889


Q ss_pred             EeCCeEEEEecCC------CeEEEEeccCCCCCCceEE
Q 016552          335 AGGGRVCAVCENG------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       335 ~~~g~i~v~gg~~------~~i~~~d~~~~~~~~~W~~  366 (387)
                      .++++|||+||.+      .++++++.+++    +|..
T Consensus       314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~----~~~~  347 (357)
T 2uvk_A          314 PWNNSLLIIGGETAGGKAVTDSVLITVKDN----KVTV  347 (357)
T ss_dssp             EETTEEEEEEEECGGGCEEEEEEEEEC-CC----SCEE
T ss_pred             EeCCEEEEEeeeCCCCCEeeeEEEEEEcCc----EeEe
Confidence            9999999999842      47888999987    8986

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=3.5e-33  Score=259.74  Aligned_cols=217  Identities=20%  Similarity=0.308  Sum_probs=187.3

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP  180 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~  180 (387)
                      .+++||+.+++|..++++|.+               |.++++++++++||++||.........+++++||+.+++|++++
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~  143 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPSA---------------RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK  143 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSSC---------------BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC
T ss_pred             cEEEEeCCCCcEEECCCCCcc---------------ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC
Confidence            388999999999999988763               55688999999999999976433455678999999999999999


Q ss_pred             CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee
Q 016552          181 ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV  260 (387)
Q Consensus       181 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg  260 (387)
                      ++|.+|..+++++.+++|||+||...  .....+++++||+.+++    |+.++++|.++..   +.+++++++||++||
T Consensus       144 ~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~---~~~~~~~~~iyv~GG  214 (318)
T 2woz_A          144 NLPIKVYGHNVISHNGMIYCLGGKTD--DKKCTNRVFIYNPKKGD----WKDLAPMKTPRSM---FGVAIHKGKIVIAGG  214 (318)
T ss_dssp             CCSSCEESCEEEEETTEEEEECCEES--SSCBCCCEEEEETTTTE----EEEECCCSSCCBS---CEEEEETTEEEEEEE
T ss_pred             CCCCcccccEEEEECCEEEEEcCCCC--CCCccceEEEEcCCCCE----EEECCCCCCCccc---ceEEEECCEEEEEcC
Confidence            99999999999999999999999854  23457789999999999    9999999977654   778899999999998


Q ss_pred             eC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC--------------CeEEEEeCCCCceeEc
Q 016552          261 KG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS--------------CTLSRYDEVMDDWKEV  321 (387)
Q Consensus       261 ~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~--------------~~l~~yd~~~~~W~~v  321 (387)
                      ..     +++++||+++++|+.++. ++..+..+++++.+++||++||..              .++++||+++++|+++
T Consensus       215 ~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          215 VTEDGLSASVEAFDLKTNKWEVMTE-FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EETTEEEEEEEEEETTTCCEEECCC-CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             cCCCCccceEEEEECCCCeEEECCC-CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            64     678999999999999987 777788888899999999999742              4699999999999999


Q ss_pred             cccccccCceEEEEeCCeEEEEe
Q 016552          322 VKSDLLKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~g~i~v~g  344 (387)
                        +|..+..++++.++++||++.
T Consensus       294 --~~~~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          294 --LKEIRYASGASCLATRLNLFK  314 (318)
T ss_dssp             --ESCCGGGTTCEEEEEEEEGGG
T ss_pred             --cccccccccceeeCCEEEEEE
Confidence              555666677788999999873

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=252.45  Aligned_cols=229  Identities=17%  Similarity=0.261  Sum_probs=191.0

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      .+|++++..  .......+++||+.+++|..++++|.+               |.++++++++++||++||...  ....
T Consensus        63 ~lyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~---------------r~~~~~~~~~~~iyv~GG~~~--~~~~  123 (302)
T 2xn4_A           63 LVFAVGGFN--GSLRVRTVDSYDPVKDQWTSVANMRDR---------------RSTLGAAVLNGLLYAVGGFDG--STGL  123 (302)
T ss_dssp             EEEEESCBC--SSSBCCCEEEEETTTTEEEEECCCSSC---------------CBSCEEEEETTEEEEEEEECS--SCEE
T ss_pred             EEEEEeCcC--CCccccceEEECCCCCceeeCCCCCcc---------------ccceEEEEECCEEEEEcCCCC--CccC
Confidence            477777631  111233589999999999999988763               556889999999999999765  3456


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      +++++||+.+++|+++++||.+|..+++++.+++||++||.+.. .....+++++||+.+++    |+.++++|.++.. 
T Consensus       124 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~-  197 (302)
T 2xn4_A          124 SSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA-SRQCLSTVECYNATTNE----WTYIAEMSTRRSG-  197 (302)
T ss_dssp             EEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT-TTEECCCEEEEETTTTE----EEEECCCSSCCBS-
T ss_pred             ceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCC-CCccccEEEEEeCCCCc----EEECCCCcccccc-
Confidence            78999999999999999999999999999999999999998652 11246789999999999    9999999977654 


Q ss_pred             cceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEEeC
Q 016552          244 EAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRYDE  313 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~yd~  313 (387)
                        +.+++++++||++||..     +++++||+++++|+.++. ++..+..+++++.+++||++||.+     ..+++||+
T Consensus       198 --~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          198 --AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-MNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             --CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             --ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-CCCccccCeEEEECCEEEEECCcCCCcccccEEEEcC
Confidence              78889999999999974     689999999999999986 677777888888999999999843     35999999


Q ss_pred             CCCceeEcc-ccccccCceEEEEeCCeE
Q 016552          314 VMDDWKEVV-KSDLLKGARHAAAGGGRV  340 (387)
Q Consensus       314 ~~~~W~~v~-~~~~~~~~~~~~~~~g~i  340 (387)
                      ++++|+.+. .+|..+..++++.++++|
T Consensus       275 ~~~~W~~~~~~~~~~r~~~~~~~~~~~i  302 (302)
T 2xn4_A          275 TTDKWTVVSSCMSTGRSYAGVTVIDKRL  302 (302)
T ss_dssp             TTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred             CCCeEEECCcccCcccccceEEEecccC
Confidence            999999997 677778788888888775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=5.6e-32  Score=250.07  Aligned_cols=248  Identities=17%  Similarity=0.191  Sum_probs=198.8

Q ss_pred             hhhhhHhhhhhhcCCCCCc--e-----eeEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccc
Q 016552           63 LHNVCHSWRRLIYSPSFPP--F-----LSLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLS  135 (387)
Q Consensus        63 ~r~VcK~W~~li~~~~f~~--~-----~~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~  135 (387)
                      +....++|..+...|.-..  .     -.+|++++.   .......+++||+.+++|..++++|.+              
T Consensus        29 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~d~~~~~W~~~~~~p~~--------------   91 (306)
T 3ii7_A           29 FNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGS---QLFPIKRMDCYNVVKDSWYSKLGPPTP--------------   91 (306)
T ss_dssp             EETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCB---SSSBCCEEEEEETTTTEEEEEECCSSC--------------
T ss_pred             ecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCC---CCCCcceEEEEeCCCCeEEECCCCCcc--------------
Confidence            3344556776654332211  0     147777764   122334689999999999999888763              


Q ss_pred             cccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCC-CCCcc
Q 016552          136 RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFS-SDVAK  214 (387)
Q Consensus       136 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~  214 (387)
                       |.++++++++++||++||.... ....+++++||+.+++|+++++||.+|..++++..+++||++||...... ....+
T Consensus        92 -r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A           92 -RDSLAACAAEGKIYTSGGSEVG-NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             -CBSCEEEEETTEEEEECCBBTT-BSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECC
T ss_pred             -ccceeEEEECCEEEEECCCCCC-CcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccc
Confidence             5668899999999999997632 45678899999999999999999999999999999999999999865211 11278


Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCc
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGP  289 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~  289 (387)
                      ++++||+.+++    |+.++++|.++..   +.+++++++||++||..     .++++||+++++|+.++. ++..+..+
T Consensus       170 ~~~~yd~~~~~----W~~~~~~p~~r~~---~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~  241 (306)
T 3ii7_A          170 SCEVYDPATET----WTELCPMIEARKN---HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP-MPWKGVTV  241 (306)
T ss_dssp             CEEEEETTTTE----EEEECCCSSCCBS---CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC-CSCCBSCC
T ss_pred             eEEEeCCCCCe----EEECCCccchhhc---ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC-CCCCccce
Confidence            99999999999    9999999977654   78889999999999864     689999999999999986 77778888


Q ss_pred             EEEEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccccccCceEEEEeC
Q 016552          290 VAAMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGG  337 (387)
Q Consensus       290 ~~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~  337 (387)
                      ++++.+++||++||.+     ..+++||+++++|+.+..+|..+..++++.+.
T Consensus       242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~  294 (306)
T 3ii7_A          242 KCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVV  294 (306)
T ss_dssp             EEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEE
T ss_pred             eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEEC
Confidence            8888999999999842     57999999999999999888777766666554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1e-31  Score=248.74  Aligned_cols=219  Identities=13%  Similarity=0.189  Sum_probs=184.9

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCC-CCCCCcce
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQ-FSSDVAKS  215 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~  215 (387)
                      +.++.++.+++.||++||. .  ....+++++||+.+++|++++++|.+|..+++++.+++||++||.... ......++
T Consensus        15 ~~~~~~~~~~~~i~v~GG~-~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~   91 (308)
T 1zgk_A           15 PRGSHAPKVGRLIYTAGGY-F--RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA   91 (308)
T ss_dssp             ------CCCCCCEEEECCB-S--SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCC
T ss_pred             eCCccccCCCCEEEEEeCc-C--CCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecce
Confidence            5567888899999999997 2  356788999999999999999999999999999999999999998310 01245678


Q ss_pred             EEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcE
Q 016552          216 VEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPV  290 (387)
Q Consensus       216 v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~  290 (387)
                      +++||+.+++    |+.++++|.+|..   +.+++++++||++||..     +++++||+.+++|+.++. ++..+..++
T Consensus        92 ~~~~d~~~~~----W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~  163 (308)
T 1zgk_A           92 LDCYNPMTNQ----WSPCAPMSVPRNR---IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGVG  163 (308)
T ss_dssp             EEEEETTTTE----EEECCCCSSCCBT---CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSCE
T ss_pred             EEEECCCCCe----EeECCCCCcCccc---cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCC-CCccccceE
Confidence            9999999999    9999999977654   78889999999999864     689999999999999987 777888888


Q ss_pred             EEEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCC
Q 016552          291 AAMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAA  360 (387)
Q Consensus       291 ~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~  360 (387)
                      +++.+++||++||..     ..+++||+++++|+.+..+|..+..++++.++++|||+||.+     ..+++||+.+.  
T Consensus       164 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--  241 (308)
T 1zgk_A          164 VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE--  241 (308)
T ss_dssp             EEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT--
T ss_pred             EEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC--
Confidence            899999999999843     469999999999999998888888888899999999999853     67999999987  


Q ss_pred             CCceEE--eCCC
Q 016552          361 PTIFVV--DTPL  370 (387)
Q Consensus       361 ~~~W~~--~~p~  370 (387)
                        +|+.  .+|.
T Consensus       242 --~W~~~~~~p~  251 (308)
T 1zgk_A          242 --TWTFVAPMKH  251 (308)
T ss_dssp             --EEEECCCCSS
T ss_pred             --cEEECCCCCC
Confidence              9996  4553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.7e-31  Score=243.91  Aligned_cols=246  Identities=15%  Similarity=0.219  Sum_probs=198.5

Q ss_pred             hhhhhhHhhhhhhcCCCCCce-------eeEEeecCCCCCCCCCCeEEEEEeCCCCC---eecCCCCCCCCcccccccCC
Q 016552           62 ILHNVCHSWRRLIYSPSFPPF-------LSLYALFSPKSNSSSTPIHLFTFDPVSST---WDPLPRPPPDPPLHLILHHP  131 (387)
Q Consensus        62 ~~r~VcK~W~~li~~~~f~~~-------~~l~~~~~~~~~~~~~~~~~~~~d~~~~~---W~~l~~~p~~p~~~~~~~~~  131 (387)
                      .+....++|..+...|.-...       ..+|++++..  .......+++||+.+++   |..++++|.+          
T Consensus        35 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~----------  102 (301)
T 2vpj_A           35 KYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD--GRSRLSSVECLDYTADEDGVWYSVAPMNVR----------  102 (301)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC--SSCBCCCEEEEETTCCTTCCCEEECCCSSC----------
T ss_pred             EEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC--CCccCceEEEEECCCCCCCeeEECCCCCCC----------
Confidence            334445667666544332110       1477777631  11223358999999999   9999888763          


Q ss_pred             CccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCC
Q 016552          132 SFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                           |..+++++.+++||++||...  ....+++++||+.+++|++++++|.+|..+++++.+++||++||.+.   ..
T Consensus       103 -----r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~  172 (301)
T 2vpj_A          103 -----RGLAGATTLGDMIYVSGGFDG--SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG---LN  172 (301)
T ss_dssp             -----CBSCEEEEETTEEEEECCBCS--SCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS---SC
T ss_pred             -----ccceeEEEECCEEEEEcccCC--CcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC---Cc
Confidence                 556889999999999999765  34578899999999999999999999999999999999999999865   23


Q ss_pred             CcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCC
Q 016552          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGW  286 (387)
Q Consensus       212 ~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~  286 (387)
                      ..+++++||+.+++    |+.++++|.++..   +.+++++++||++||..     +++++||+++++|++++. ++..+
T Consensus       173 ~~~~~~~~d~~~~~----W~~~~~~p~~r~~---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r  244 (301)
T 2vpj_A          173 ILNSVEKYDPHTGH----WTNVTPMATKRSG---AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-MTTPR  244 (301)
T ss_dssp             BCCCEEEEETTTTE----EEEECCCSSCCBS---CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC-CSSCC
T ss_pred             ccceEEEEeCCCCc----EEeCCCCCccccc---ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC-CCCcc
Confidence            57789999999999    9999999977654   78889999999999974     689999999999999986 67777


Q ss_pred             CCcEEEEeCCeEEEEeCCC-----CeEEEEeCCCCceeEccccccccCceEEEEeC
Q 016552          287 RGPVAAMDEEVLYGIDENS-----CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGG  337 (387)
Q Consensus       287 ~~~~~~~~~~~ly~~~~~~-----~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~  337 (387)
                      ..+++++.+++||++||.+     ..+++||+++++|+.+..+|..+..++++.++
T Consensus       245 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~  300 (301)
T 2vpj_A          245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR  300 (301)
T ss_dssp             BSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred             cceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence            7888888999999999853     36899999999999999988877777666653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.98  E-value=2.7e-30  Score=244.01  Aligned_cols=217  Identities=13%  Similarity=0.085  Sum_probs=173.1

Q ss_pred             ccceEEEEECCEEEEEecccCCCCCCCCccEEEecc--CCceeeCCCCC-CCCcceeEEEeCCEEEEEecC-CC-CCCCC
Q 016552          137 NLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPI--CRTWTFGPELV-TPRRWCAAGCSRGAVYVASGI-GS-QFSSD  211 (387)
Q Consensus       137 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~--t~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~-~~-~~~~~  211 (387)
                      |.++.++.++++||++||...      +++++||+.  +++|+++++|| .+|..+++++++++|||+||. .. .....
T Consensus        10 r~~~~~~~~~~~iyv~GG~~~------~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~   83 (357)
T 2uvk_A           10 FKSGTGAIDNDTVYIGLGSAG------TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQ   83 (357)
T ss_dssp             CCSCEEEEETTEEEEECGGGT------TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEE
T ss_pred             ccceEEEEECCEEEEEeCcCC------CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccce
Confidence            455777888999999999753      379999998  49999999999 899999999999999999998 31 11124


Q ss_pred             CcceEEEEECCCCccccCeEEcCCCC-CCCccccceEEEEECCEEEEEeeeC----------------------------
Q 016552          212 VAKSVEKWDLMNGEKNSRWEKTGELK-DGRFSREAIDAVGWKGKLCLVNVKG----------------------------  262 (387)
Q Consensus       212 ~~~~v~~yd~~~~~~~~~W~~~~~~p-~~~~~~~~~~~~~~~g~lyv~gg~~----------------------------  262 (387)
                      .++++++||+.+++    |+.+++|+ .+|..   +++++++++||++||..                            
T Consensus        84 ~~~~v~~yd~~~~~----W~~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (357)
T 2uvk_A           84 VFNDVHKYNPKTNS----WVKLMSHAPMGMAG---HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY  156 (357)
T ss_dssp             ECCCEEEEETTTTE----EEECSCCCSSCCSS---EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eeccEEEEeCCCCc----EEECCCCCCccccc---ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence            57789999999999    99999988 55543   77888999999999853                            


Q ss_pred             -----------CeEEEEECCCCceeecccccccCC-CCcEEEEeCCeEEEEeCC------CCeEEEEeC--CCCceeEcc
Q 016552          263 -----------AEGAVYDVVANTWDDMREGMVRGW-RGPVAAMDEEVLYGIDEN------SCTLSRYDE--VMDDWKEVV  322 (387)
Q Consensus       263 -----------~~i~~yD~~~~~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~~------~~~l~~yd~--~~~~W~~v~  322 (387)
                                 +++++||+.+++|+.++. ++... .++++++.+++||++||.      ...+++||+  ++++|+.+.
T Consensus       157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~  235 (357)
T 2uvk_A          157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGE-SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA  235 (357)
T ss_dssp             HSSCGGGGCCCCEEEEEETTTTEEEEEEE-CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECC
T ss_pred             ccccccccCCcccEEEEeCCCCcEEECCC-CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC
Confidence                       589999999999999976 55443 458888899999999973      346888976  999999998


Q ss_pred             cccccc--CceEEEEeCCeEEEEecCC----------------------CeEEEEeccCCCCCCceEE--eCCCC
Q 016552          323 KSDLLK--GARHAAAGGGRVCAVCENG----------------------GGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       323 ~~~~~~--~~~~~~~~~g~i~v~gg~~----------------------~~i~~~d~~~~~~~~~W~~--~~p~~  371 (387)
                      .++..+  ..++++.++++|||+||.+                      ..+++||+.+.    +|..  .+|..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~  306 (357)
T 2uvk_A          236 PVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG----KWDKSGELSQG  306 (357)
T ss_dssp             CSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-------CEEEEECSSC
T ss_pred             CCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC----ceeeCCCCCCC
Confidence            876543  3566889999999999832                      36899999987    8995  55543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.97  E-value=6.3e-29  Score=253.92  Aligned_cols=236  Identities=9%  Similarity=0.104  Sum_probs=183.1

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCC-CCCCCCcccccccCCCccccccceEEEEE--CCEEEEEecccCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLP-RPPPDPPLHLILHHPSFLSRNLPVQLVSL--SGKLILLAATTHNFN  160 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~  160 (387)
                      .+|++++..   ......+++||+.+++|..++ ++|... .         ...|.+|+++++  +++||++||.... .
T Consensus       399 ~iyv~GG~~---~~~~~~v~~yd~~~~~W~~~~~~~p~~~-~---------p~~R~~hs~~~~~~~~~lyv~GG~~~~-~  464 (695)
T 2zwa_A          399 DVFYMGGSN---PYRVNEILQLSIHYDKIDMKNIEVSSSE-V---------PVARMCHTFTTISRNNQLLLIGGRKAP-H  464 (695)
T ss_dssp             CEEEECCBS---SSBCCCEEEEEECSSCEEEEECCCCCSC-C---------CCCCBSCEEEEETTTTEEEEECCBSST-T
T ss_pred             EEEEECCCC---CCCcCcEEEEECCCCeEEEeccCCCCCC-C---------CccccceEEEEEccCCEEEEEcCCCCC-C
Confidence            367776631   122335899999999999988 643110 0         122677999999  9999999997653 2


Q ss_pred             CCCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCC---C
Q 016552          161 PALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE---L  236 (387)
Q Consensus       161 ~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~---~  236 (387)
                      ...+++++||+.+++|+.+++||.+|..|+++++ +++|||+||.+..  .    ++++||+.+++    |+.+++   +
T Consensus       465 ~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~--~----~v~~yd~~t~~----W~~~~~~g~~  534 (695)
T 2zwa_A          465 QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG--P----AMLLYNVTEEI----FKDVTPKDEF  534 (695)
T ss_dssp             CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS--C----SEEEEETTTTE----EEECCCSSGG
T ss_pred             CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC--C----CEEEEECCCCc----eEEccCCCCC
Confidence            3678899999999999999999999999999996 9999999998662  1    89999999999    999986   7


Q ss_pred             CCCCccccceEEEEEC---CEEEEEeeeC-------CeEEEEECCCCc------eeecccccccCCCCcEEEEeC-CeEE
Q 016552          237 KDGRFSREAIDAVGWK---GKLCLVNVKG-------AEGAVYDVVANT------WDDMREGMVRGWRGPVAAMDE-EVLY  299 (387)
Q Consensus       237 p~~~~~~~~~~~~~~~---g~lyv~gg~~-------~~i~~yD~~~~~------W~~~~~~~~~~~~~~~~~~~~-~~ly  299 (387)
                      |.++..   +++++++   ++||++||..       +++++||+.+++      |+.+...++.++.++++++.+ ++||
T Consensus       535 p~~r~~---~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          535 FQNSLV---SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             GGSCCB---SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred             CCcccc---eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence            766654   6667777   8999999972       679999999999      888876335667788888888 9999


Q ss_pred             EEeCC--------CCeEEEEeCCCCceeEccccc-------cccCceEEEEeCC-eEEEEecC
Q 016552          300 GIDEN--------SCTLSRYDEVMDDWKEVVKSD-------LLKGARHAAAGGG-RVCAVCEN  346 (387)
Q Consensus       300 ~~~~~--------~~~l~~yd~~~~~W~~v~~~~-------~~~~~~~~~~~~g-~i~v~gg~  346 (387)
                      ++||.        ...+++||+++++|+.+..+.       +.+..++++.+++ +|||+||+
T Consensus       612 v~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          612 IVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             EECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             EECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            99983        346999999999999754321       2234566777665 99999985

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=7.8e-28  Score=245.82  Aligned_cols=214  Identities=9%  Similarity=0.070  Sum_probs=178.5

Q ss_pred             cccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCC-C-----CCCCCcceeEEEe--CCEEEEEecCCCC
Q 016552          136 RNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGP-E-----LVTPRRWCAAGCS--RGAVYVASGIGSQ  207 (387)
Q Consensus       136 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~-~-----~p~~r~~~~~~~~--~~~iyv~GG~~~~  207 (387)
                      +|+++. ++.+++||++||...   ...+++++||+.+++|+.++ +     ||.+|..|+++++  +++|||+||.+. 
T Consensus       388 rr~g~~-~~~~~~iyv~GG~~~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~-  462 (695)
T 2zwa_A          388 RKFGDV-DVAGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA-  462 (695)
T ss_dssp             CBSCEE-EECSSCEEEECCBSS---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS-
T ss_pred             CceeEE-EEECCEEEEECCCCC---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC-
Confidence            355544 448999999999754   45678999999999999988 6     7899999999999  999999999876 


Q ss_pred             CCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeC--CeEEEEECCCCceeeccc--cc
Q 016552          208 FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKG--AEGAVYDVVANTWDDMRE--GM  282 (387)
Q Consensus       208 ~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~--~~  282 (387)
                       ....++++++||+.+++    |+.++++|.+|..   ++++++ +++||++||..  .++++||+.+++|+.++.  .+
T Consensus       463 -~~~~~~dv~~yd~~t~~----W~~~~~~p~~R~~---h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~  534 (695)
T 2zwa_A          463 -PHQGLSDNWIFDMKTRE----WSMIKSLSHTRFR---HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF  534 (695)
T ss_dssp             -TTCBCCCCEEEETTTTE----EEECCCCSBCCBS---CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGG
T ss_pred             -CCCccccEEEEeCCCCc----EEECCCCCCCccc---ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCC
Confidence             23357889999999999    9999999987765   778885 99999999976  379999999999999975  25


Q ss_pred             ccCCCCcEEEEeC---CeEEEEeCC-------CCeEEEEeCCCCc------eeEccccc-cccCceEEEEeC-CeEEEEe
Q 016552          283 VRGWRGPVAAMDE---EVLYGIDEN-------SCTLSRYDEVMDD------WKEVVKSD-LLKGARHAAAGG-GRVCAVC  344 (387)
Q Consensus       283 ~~~~~~~~~~~~~---~~ly~~~~~-------~~~l~~yd~~~~~------W~~v~~~~-~~~~~~~~~~~~-g~i~v~g  344 (387)
                      +..+.++++++.+   ++||++||.       ...+++||+++++      |+.+..+| ..+..++++.++ |+|||+|
T Consensus       535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~G  614 (695)
T 2zwa_A          535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVG  614 (695)
T ss_dssp             GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEEC
T ss_pred             CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEEC
Confidence            6677777766655   789999984       2469999999999      89888754 566677888888 9999999


Q ss_pred             cC--------CCeEEEEeccCCCCCCceEE
Q 016552          345 EN--------GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       345 g~--------~~~i~~~d~~~~~~~~~W~~  366 (387)
                      |.        ...+++||+.+.    .|..
T Consensus       615 G~~~~~~~~~~~~v~~yd~~t~----~W~~  640 (695)
T 2zwa_A          615 GTSPSGLFDRTNSIISLDPLSE----TLTS  640 (695)
T ss_dssp             CBCSSCCCCTTTSEEEEETTTT----EEEE
T ss_pred             CccCCCCCCCCCeEEEEECCCC----eEEE
Confidence            83        357999999988    9985

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=1.3e-26  Score=236.19  Aligned_cols=267  Identities=10%  Similarity=0.055  Sum_probs=191.0

Q ss_pred             hHhhhhhhcCCCCCce---e----eEEeecCCCCCC----CCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccc
Q 016552           67 CHSWRRLIYSPSFPPF---L----SLYALFSPKSNS----SSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLS  135 (387)
Q Consensus        67 cK~W~~li~~~~f~~~---~----~l~~~~~~~~~~----~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~  135 (387)
                      ..+|..+...|.....   .    .+|++++.....    ......+++||+.+++|..++.+|....            
T Consensus       175 ~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~------------  242 (656)
T 1k3i_A          175 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD------------  242 (656)
T ss_dssp             SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC------------
T ss_pred             CCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC------------
Confidence            3567666655543211   1    366665431100    0122358899999999999987765211            


Q ss_pred             cccceEEE-EECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCc
Q 016552          136 RNLPVQLV-SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       136 ~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~  213 (387)
                       ..+++++ ..+++||++||...      .++++||+.+++|.++++|+.+|..++++++ +++|||+||...  .....
T Consensus       243 -~~~~~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~--~~~~~  313 (656)
T 1k3i_A          243 -MFCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS--GGVFE  313 (656)
T ss_dssp             -CSSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC--SSSCC
T ss_pred             -CccccccCCCCCCEEEeCCCCC------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCccc--CCccc
Confidence             1223333 46899999999643      2799999999999999999999999998888 999999999543  13456


Q ss_pred             ceEEEEECCCCccccCeEEcC-----CCCCCCccccceEEEEECCEEEEEeeeC---------CeEEEEECCCCceeecc
Q 016552          214 KSVEKWDLMNGEKNSRWEKTG-----ELKDGRFSREAIDAVGWKGKLCLVNVKG---------AEGAVYDVVANTWDDMR  279 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~-----~~p~~~~~~~~~~~~~~~g~lyv~gg~~---------~~i~~yD~~~~~W~~~~  279 (387)
                      +++++||+.+++    |+.++     +|+..+.    ..++..++++|+++|..         ..++.||+++++|....
T Consensus       314 ~~~e~yd~~t~~----W~~~~~~~~~p~~~~~~----~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~  385 (656)
T 1k3i_A          314 KNGEVYSPSSKT----WTSLPNAKVNPMLTADK----QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA  385 (656)
T ss_dssp             CCEEEEETTTTE----EEEETTSCSGGGCCCCT----TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred             ccceEeCCCCCc----ceeCCCccccccccccc----cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence            789999999999    99984     4443322    23445689999998643         67899999999987543


Q ss_pred             ccccc------CCCCcEEE---EeCCeEEEEeCCC--------C---eEEEEeCCCCceeEcc--ccccccCceEEEEe-
Q 016552          280 EGMVR------GWRGPVAA---MDEEVLYGIDENS--------C---TLSRYDEVMDDWKEVV--KSDLLKGARHAAAG-  336 (387)
Q Consensus       280 ~~~~~------~~~~~~~~---~~~~~ly~~~~~~--------~---~l~~yd~~~~~W~~v~--~~~~~~~~~~~~~~-  336 (387)
                      ...+.      .....+++   ..+++||++||..        .   .+.+||+++++|.++.  .+|..+..+.++.+ 
T Consensus       386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~  465 (656)
T 1k3i_A          386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP  465 (656)
T ss_dssp             EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT
T ss_pred             CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC
Confidence            32222      11223333   2589999999842        2   6889999999999986  77777777777776 


Q ss_pred             CCeEEEEecCC-----------CeEEEEeccCCCCCCceEE
Q 016552          337 GGRVCAVCENG-----------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       337 ~g~i~v~gg~~-----------~~i~~~d~~~~~~~~~W~~  366 (387)
                      +|+|||+||..           ..+++||+.+.    +|..
T Consensus       466 ~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~----~W~~  502 (656)
T 1k3i_A          466 DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD----TFYK  502 (656)
T ss_dssp             TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT----EEEE
T ss_pred             CCCEEEECCcccCcCcCCCCcccceEEEcCCCC----ceee
Confidence            99999999842           56899999987    9996

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.92  E-value=1.6e-24  Score=220.63  Aligned_cols=236  Identities=11%  Similarity=0.057  Sum_probs=176.4

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEE-CCEEEEEecccCCCCCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSL-SGKLILLAATTHNFNPA  162 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~  162 (387)
                      .+|++++.    ..  ..+++||+.+++|..+++|+..               |..++++++ +++||++||.... ...
T Consensus       255 ~lyv~GG~----~~--~~v~~yd~~t~~W~~~~~~~~~---------------R~~~s~~~~~dg~iyv~GG~~~~-~~~  312 (656)
T 1k3i_A          255 QIVVTGGN----DA--KKTSLYDSSSDSWIPGPDMQVA---------------RGYQSSATMSDGRVFTIGGSWSG-GVF  312 (656)
T ss_dssp             CEEEECSS----ST--TCEEEEEGGGTEEEECCCCSSC---------------CSSCEEEECTTSCEEEECCCCCS-SSC
T ss_pred             CEEEeCCC----CC--CceEEecCcCCceeECCCCCcc---------------ccccceEEecCCeEEEEeCcccC-Ccc
Confidence            46777653    11  2689999999999999988763               556788888 9999999994322 336


Q ss_pred             CCccEEEeccCCceeeC-----CCCCCCCcceeEEEeCCEEEEEecCCCC-CCCCCcceEEEEECCCCccccCeEEcCCC
Q 016552          163 LTRPLIFDPICRTWTFG-----PELVTPRRWCAAGCSRGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGEL  236 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~~l-----~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~v~~yd~~~~~~~~~W~~~~~~  236 (387)
                      .+++++||+.+++|+.+     ++|+..|.. +++..++++|++||.+.. +.....+.++.||+.++.    |......
T Consensus       313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~  387 (656)
T 1k3i_A          313 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGK  387 (656)
T ss_dssp             CCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEE
T ss_pred             cccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcc----eeecCCc
Confidence            67899999999999997     466666654 555678999999998542 111245789999999999    8754321


Q ss_pred             CCC----CccccceEEEE---ECCEEEEEeeeC--------C---eEEEEECCCCceeecc-cccccCCCCcEEEEe-CC
Q 016552          237 KDG----RFSREAIDAVG---WKGKLCLVNVKG--------A---EGAVYDVVANTWDDMR-EGMVRGWRGPVAAMD-EE  296 (387)
Q Consensus       237 p~~----~~~~~~~~~~~---~~g~lyv~gg~~--------~---~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~~~-~~  296 (387)
                      +..    ...+..+.+++   .+++||++||..        .   .+++||+.+++|.++. ..++.++..+++++. +|
T Consensus       388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g  467 (656)
T 1k3i_A          388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG  467 (656)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS
T ss_pred             cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC
Confidence            110    00111233443   489999999953        2   7899999999999886 347778777777766 99


Q ss_pred             eEEEEeCCC-----------CeEEEEeCCCCceeEccccccccCceEEEEe--CCeEEEEecC
Q 016552          297 VLYGIDENS-----------CTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCEN  346 (387)
Q Consensus       297 ~ly~~~~~~-----------~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~g~i~v~gg~  346 (387)
                      +||++||.+           ..+++||+++++|+.+..++..+..+.++.+  +|+||++||+
T Consensus       468 ~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          468 STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            999999842           4589999999999999988877777766666  9999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.25  E-value=2.8e-09  Score=102.59  Aligned_cols=186  Identities=9%  Similarity=0.041  Sum_probs=108.6

Q ss_pred             EEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          142 LVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       142 ~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      ++...+.+++.|+.++       .+.+||..+++-..  .+........+...+++.++.|+.+.        .+.+||.
T Consensus       164 ~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~dg--------~i~~wd~  226 (445)
T 2ovr_B          164 SSQMRDNIIISGSTDR-------TLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVVSGSRDA--------TLRVWDI  226 (445)
T ss_dssp             EEEEETTEEEEEETTS-------CEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEEEEETTS--------EEEEEES
T ss_pred             EEEecCCEEEEEeCCC-------eEEEEECCcCcEEE--EECCCCCcEEEEEecCCEEEEEeCCC--------EEEEEEC
Confidence            3444466666666432       58899998875432  12222222223334555666666544        7889999


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEE
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGI  301 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~  301 (387)
                      .+.+    -...-.-...     ...++..++..++.++.+..+.+||+.+.+-...-.  .......++.. ++..++.
T Consensus       227 ~~~~----~~~~~~~~~~-----~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~-~~~~l~~  294 (445)
T 2ovr_B          227 ETGQ----CLHVLMGHVA-----AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQF-DGIHVVS  294 (445)
T ss_dssp             SSCC----EEEEEECCSS-----CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC--CCSSCEEEEEE-CSSEEEE
T ss_pred             CCCc----EEEEEcCCcc-----cEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEec--CCCCceEEEEE-CCCEEEE
Confidence            8876    3221111111     133455588877777777889999988764321111  00111223334 5666677


Q ss_pred             eCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          302 DENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 ~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.++.+..||..+.+-.  ...............++..++.|+.++.+.+||+.+.
T Consensus       295 ~~~d~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~  349 (445)
T 2ovr_B          295 GSLDTSIRVWDVETGNCI--HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG  349 (445)
T ss_dssp             EETTSCEEEEETTTCCEE--EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             EeCCCeEEEEECCCCCEE--EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC
Confidence            777889999999876432  2222233344455566778888888888999999754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.16  E-value=1.9e-09  Score=103.48  Aligned_cols=281  Identities=16%  Similarity=0.109  Sum_probs=154.8

Q ss_pred             CCCCCCChHH----HHHHHhhhcC---chhhhhhhHhhhhhhcCCCCCceeeEEeecCCC------CCCCCC----CeEE
Q 016552           40 QPLLPGLPDH----IAHLCLSHVH---PSILHNVCHSWRRLIYSPSFPPFLSLYALFSPK------SNSSST----PIHL  102 (387)
Q Consensus        40 ~~~~~~LPdd----l~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~~~~~l~~~~~~~------~~~~~~----~~~~  102 (387)
                      ...+..||+|    |+..||++|+   |.++..|||+|+.++.++.+.+.++...+....      ......    ....
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   87 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP   87 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC----
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCC
Confidence            3456789999    9999999999   899999999999999987653221100000000      000000    0000


Q ss_pred             EEEeCC-------------------CCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCC
Q 016552          103 FTFDPV-------------------SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPAL  163 (387)
Q Consensus       103 ~~~d~~-------------------~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  163 (387)
                      ...++.                   ...|........     .+.+|..   ...+..++..++..++.|+.++      
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~---~~~~v~~~~~d~~~l~~g~~dg------  153 (435)
T 1p22_A           88 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQ-----RIHCRSE---TSKGVYCLQYDDQKIVSGLRDN------  153 (435)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCC-----CEECCCS---SCCCEEEEECCSSEEEEEESSS------
T ss_pred             CCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccce-----EEecccC---CCCcEEEEEECCCEEEEEeCCC------
Confidence            000000                   112322111110     0001110   0112445556777888877433      


Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                       .+.+||..+.+-...  +........+...++++++.|+.+.        .+.+||..+++    -...-....     
T Consensus       154 -~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~dg--------~i~vwd~~~~~----~~~~~~~h~-----  213 (435)
T 1p22_A          154 -TIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSDS--------TVRVWDVNTGE----MLNTLIHHC-----  213 (435)
T ss_dssp             -CEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETTS--------CEEEEESSSCC----EEEEECCCC-----
T ss_pred             -eEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCCC--------eEEEEECCCCc----EEEEEcCCC-----
Confidence             688999887654332  2222222233344778888887654        78899998887    432221111     


Q ss_pred             cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCC--CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEc
Q 016552          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR--GPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEV  321 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~--~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v  321 (387)
                      ....++..++...+.++.+..+.+||..+..-..... ...+..  ..++.. ++..++.++.++.+.+||.++.+-  +
T Consensus       214 ~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~--~  289 (435)
T 1p22_A          214 EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR-VLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF--V  289 (435)
T ss_dssp             SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE-EECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCE--E
T ss_pred             CcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeee-EecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcE--E
Confidence            1133455566666777777889999998765321111 111111  223334 455566666788999999987643  2


Q ss_pred             cccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          322 VKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       322 ~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...........++..++..++.|+..+.|.+||+.+.
T Consensus       290 ~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          290 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             EEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence            2333333444555667888888888888999998854

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.11  E-value=1.8e-08  Score=97.22  Aligned_cols=187  Identities=11%  Similarity=-0.001  Sum_probs=103.1

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEEE---eCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAGC---SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      +.+++.|+.+       ..+.+||..+++-...  +.... ...+...   -+++.++.|+.+.        .+.+||..
T Consensus       173 ~~~l~s~s~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~l~s~s~d~--------~i~vwd~~  235 (464)
T 3v7d_B          173 GGILVSGSTD-------RTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRDN--------TLHVWKLP  235 (464)
T ss_dssp             TTEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEEEEEEEESSSCEEEEEEETTS--------CEEEEECC
T ss_pred             CCEEEEEeCC-------CCEEEEECCCCcEEEE--ECCCCCccEEEEEecCCCCCEEEEEcCCC--------cEEEeeCC
Confidence            4466666643       3588999988754331  11111 1111222   2457777777644        67788877


Q ss_pred             CCccccCeEEcCCCC----------C--------CCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccccccc
Q 016552          223 NGEKNSRWEKTGELK----------D--------GRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVR  284 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p----------~--------~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~  284 (387)
                      +..    -.......          .        .........++..++.+.+.++.+..+.+||..+.+-...-...  
T Consensus       236 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--  309 (464)
T 3v7d_B          236 KES----SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--  309 (464)
T ss_dssp             CCC----CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--
T ss_pred             CCc----ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence            665    11100000          0        00000112233455666667776778999999876532211101  


Q ss_pred             CCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          285 GWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       285 ~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .....+++. .++..++.++.++.|.+||.++.+  .+............+..++..++.|+..+.+.+||+.+.
T Consensus       310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence            111122333 245666677778899999998764  333333344455566667888888888888999999864

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.71  E-value=4.8e-09  Score=69.17  Aligned_cols=42  Identities=24%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             CCCCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCC
Q 016552           39 HQPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        39 ~~~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~   80 (387)
                      ....|..||+||+.+||++||   +.+++.|||+|+.++.++.|.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            345689999999999999999   889999999999999998773

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.68  E-value=4.9e-06  Score=76.65  Aligned_cols=215  Identities=13%  Similarity=-0.038  Sum_probs=125.6

Q ss_pred             eEEEEEeCCCCCe-ecCCCCCCCCcccccccCCCccccccceEEEE-ECCEEEEEecccCCCCCCCCccEEEeccCCcee
Q 016552          100 IHLFTFDPVSSTW-DPLPRPPPDPPLHLILHHPSFLSRNLPVQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWT  177 (387)
Q Consensus       100 ~~~~~~d~~~~~W-~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~  177 (387)
                      ..+.++|+.+.+- ..++....                  ...++. .++++|+....       ...+.++|+.|++-.
T Consensus        64 ~~v~viD~~t~~~~~~i~~~~~------------------p~~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITGFTS------------------PRYIHFLSDEKAYVTQIW-------DYRIFIINPKTYEIT  118 (328)
T ss_dssp             TEEEEEETTTCCEEEEEECCSS------------------EEEEEEEETTEEEEEEBS-------CSEEEEEETTTTEEE
T ss_pred             CEEEEEECcccEEEEEcCCCCC------------------CcEEEEeCCCeEEEEECC-------CCeEEEEECCCCeEE
Confidence            3578899988665 33432211                  134444 67899998642       247899999998755


Q ss_pred             eCCCCCCC----CcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC
Q 016552          178 FGPELVTP----RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG  253 (387)
Q Consensus       178 ~l~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g  253 (387)
                      ..-+....    ..-...+..++++||..-.       ..+.+.++|+.+++    ....-+...  .. . .....-+|
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-------~~~~v~viD~~t~~----~~~~i~~g~--~p-~-~i~~~~dG  183 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQYGKYVYVNCWS-------YQNRILKIDTETDK----VVDELTIGI--QP-T-SLVMDKYN  183 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEEETTEEEEEECT-------TCCEEEEEETTTTE----EEEEEECSS--CB-C-CCEECTTS
T ss_pred             EEEEcCCccccCCCcceEEEECCEEEEEcCC-------CCCEEEEEECCCCe----EEEEEEcCC--Cc-c-ceEEcCCC
Confidence            31111110    0112233478899998421       12378999999988    543222211  11 0 12333468


Q ss_pred             EEEEEeeeC----------CeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEc
Q 016552          254 KLCLVNVKG----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEV  321 (387)
Q Consensus       254 ~lyv~gg~~----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v  321 (387)
                      ++|+.....          ..+.++|+++++....-. .+.+.....+++.  ++.||+...   .+++||+++.+....
T Consensus       184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~  259 (328)
T 3dsm_A          184 KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR  259 (328)
T ss_dssp             EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSS
T ss_pred             CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeee
Confidence            999886432          579999999887542211 2222222345554  567888743   899999998765322


Q ss_pred             ccccc-ccCceEEEE--eCCeEEEEe----cCCCeEEEEeccCC
Q 016552          322 VKSDL-LKGARHAAA--GGGRVCAVC----ENGGGIVVVDVKAA  358 (387)
Q Consensus       322 ~~~~~-~~~~~~~~~--~~g~i~v~g----g~~~~i~~~d~~~~  358 (387)
                      ...+. ...+..++.  .+++||+..    ..++.|.+||++.+
T Consensus       260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~  303 (328)
T 3dsm_A          260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK  303 (328)
T ss_dssp             CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred             eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence            21121 123444444  368899997    55678999999843

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.62  E-value=3.3e-05  Score=71.02  Aligned_cols=178  Identities=6%  Similarity=-0.071  Sum_probs=110.4

Q ss_pred             CCccEEEeccCCceeeCC-----CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCe-EEcCCC
Q 016552          163 LTRPLIFDPICRTWTFGP-----ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRW-EKTGEL  236 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~~l~-----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W-~~~~~~  236 (387)
                      ...+.++|+.|+++..--     ..+........+..++++|+.....        ..+.++|+.+.+    - ..++..
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~--------~~v~viD~~t~~----~~~~i~~~   83 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNS--------HVIFAIDINTFK----EVGRITGF   83 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGG--------TEEEEEETTTCC----EEEEEECC
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCC--------CEEEEEECcccE----EEEEcCCC
Confidence            457899999999886521     1111122234456789999986532        378999999888    4 234322


Q ss_pred             CCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCcee-ecccccccC--CCCcEEEEeCCeEEEEeC-CCCeEEEEe
Q 016552          237 KDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRG--WRGPVAAMDEEVLYGIDE-NSCTLSRYD  312 (387)
Q Consensus       237 p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~--~~~~~~~~~~~~ly~~~~-~~~~l~~yd  312 (387)
                      ..++     ..++.-+|++|+.......+.++|+++++-. .++.....+  .....+++.+++||+.+. .++.|.++|
T Consensus        84 ~~p~-----~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           84 TSPR-----YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             SSEE-----EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEE
T ss_pred             CCCc-----EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEE
Confidence            2121     2223368999998855678999999988643 222111000  012234557899999975 367899999


Q ss_pred             CCCCceeEccccccccCceEEEEeCCeEEEEecCC----------CeEEEEeccCC
Q 016552          313 EVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG----------GGIVVVDVKAA  358 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~----------~~i~~~d~~~~  358 (387)
                      +++++....-...... ....+.-+|++|+...+.          ..+.++|..+.
T Consensus       159 ~~t~~~~~~i~~g~~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          159 TETDKVVDELTIGIQP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             TTTTEEEEEEECSSCB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred             CCCCeEEEEEEcCCCc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence            9998765432221111 122334568988886543          68999999865

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.58  E-value=1.1e-08  Score=91.81  Aligned_cols=46  Identities=17%  Similarity=0.302  Sum_probs=39.4

Q ss_pred             CCCCCCCCCCChHHHHHHHhhhcC---ch-hhhhhhHhhhhhhcCCCCCc
Q 016552           36 GDDHQPLLPGLPDHIAHLCLSHVH---PS-ILHNVCHSWRRLIYSPSFPP   81 (387)
Q Consensus        36 ~~~~~~~~~~LPddl~~~iL~rLP---l~-~~r~VcK~W~~li~~~~f~~   81 (387)
                      ..+....+..||+||+++||++||   |. ++++|||+|+.|++++.|.+
T Consensus        44 ~~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~   93 (297)
T 2e31_A           44 EAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWL   93 (297)
T ss_dssp             ---CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHH
T ss_pred             ccccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHH
Confidence            334456889999999999999999   88 99999999999999998843

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=2.9e-05  Score=67.78  Aligned_cols=151  Identities=22%  Similarity=0.236  Sum_probs=104.3

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEE
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYD  269 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD  269 (387)
                      .....++.+|+..|...      .+.+.++|+.+++    =...-+++...+.   ...+..+++||+.....+.+.+||
T Consensus        25 GL~~~~~~LyestG~~g------~S~v~~vD~~tgk----v~~~~~l~~~~fg---eGi~~~~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETG------RSSVRKVDLETGR----ILQRAEVPPPYFG---AGIVAWRDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             EEEEETTEEEEEECCTT------SCEEEEEETTTCC----EEEEEECCTTCCE---EEEEEETTEEEEEESSSSEEEEEE
T ss_pred             cEEEECCEEEEECCCCC------CceEEEEECCCCC----EEEEEeCCCCcce---eEEEEeCCEEEEEEeeCCEEEEEE
Confidence            45556889999988643      2478999999998    5544455544343   445677999999987778999999


Q ss_pred             CCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeE-c--ccccc-ccCceEEEEeCCeEEEEe
Q 016552          270 VVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKE-V--VKSDL-LKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       270 ~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~-v--~~~~~-~~~~~~~~~~~g~i~v~g  344 (387)
                      +++.+-. +++. ..   .+-+++..+++||+-++ +++|..+|+++.+=.. +  ...+. .....-+-..+|+||+-.
T Consensus        92 ~~tl~~~~ti~~-~~---~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv  166 (243)
T 3mbr_X           92 LATLTPRARFRY-PG---EGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV  166 (243)
T ss_dssp             TTTTEEEEEEEC-SS---CCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CCcCcEEEEEeC-CC---CceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence            9886532 3332 12   34566667788999886 7889999999864332 2  12111 122233455699999776


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      -..+.|.++|+.+.
T Consensus       167 w~s~~I~vIDp~tG  180 (243)
T 3mbr_X          167 WLTSRIARIDPASG  180 (243)
T ss_dssp             TTTTEEEEECTTTC
T ss_pred             CCCCeEEEEECCCC
Confidence            67889999999865

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.33  E-value=0.00015  Score=64.41  Aligned_cols=196  Identities=6%  Similarity=-0.138  Sum_probs=118.2

Q ss_pred             eEEEEEC-CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEE
Q 016552          140 VQLVSLS-GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       140 ~~~~~~~-~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      +.++..+ +.||+..|..     ..+.+.++|+.|++-..--+++........+..+++||+..-.+        +.+.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~-----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~--------~~v~v   90 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLY-----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK--------NIGFI   90 (266)
T ss_dssp             EEEEECSTTEEEEEECST-----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC--------SEEEE
T ss_pred             ccEEEeCCCeEEEECCCC-----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC--------CEEEE
Confidence            4555555 7899987732     23579999999998665333333223334566688999985432        37899


Q ss_pred             EECCCCccccCeEEcCCCCCCCccccceEEEEEC-CEEEEEeeeCCeEEEEECCCCce-eeccccc-ccCCC-CcEEEEe
Q 016552          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWK-GKLCLVNVKGAEGAVYDVVANTW-DDMREGM-VRGWR-GPVAAMD  294 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~-g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~-~~~~~-~~~~~~~  294 (387)
                      ||..+.+      .+..++.+ . .... ....| +++|+..+ .+.+.++|+++.+= ..++... +.... -..+...
T Consensus        91 iD~~t~~------v~~~i~~g-~-~~g~-glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           91 YDRRTLS------NIKNFTHQ-M-KDGW-GLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             EETTTTE------EEEEEECC-S-SSCC-EEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             EECCCCc------EEEEEECC-C-CCeE-EEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            9998766      22222222 0 1112 23334 56888775 46999999988642 2333211 11111 1123344


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCc---eeEccccc-c--------ccCceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDD---WKEVVKSD-L--------LKGARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~---W~~v~~~~-~--------~~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++||+-...++.|.+.|+++++   |..+..+. .        .....+++..  ++++||.|+..+.++++|+...
T Consensus       161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            88999877667899999999874   33333211 0        0122444443  4679999888899999999865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.32  E-value=0.00061  Score=59.39  Aligned_cols=196  Identities=11%  Similarity=-0.064  Sum_probs=121.1

Q ss_pred             cceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEE
Q 016552          138 LPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       138 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      +...+...++.||+-.|..+     .+.+.++|+.|++-..--+++..-.....+..+++||++....        +.+.
T Consensus        22 ftqGL~~~~~~LyestG~~g-----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~--------~~v~   88 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETG-----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN--------HEGF   88 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTT-----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEE
T ss_pred             ccccEEEECCEEEEECCCCC-----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC--------CEEE
Confidence            33567777899999888432     3578999999998766445554434455677799999985443        3889


Q ss_pred             EEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCce-eecccc-cccCCCC-cEEEEe
Q 016552          218 KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW-DDMREG-MVRGWRG-PVAAMD  294 (387)
Q Consensus       218 ~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~-~~~~~~~-~~~~~~  294 (387)
                      +||..+-+    -...  ++.+..   ....+.-+++||+..| ...+..+|+++.+= ..+... .+..... ..+...
T Consensus        89 v~D~~tl~----~~~t--i~~~~~---Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~  158 (243)
T 3mbr_X           89 VYDLATLT----PRAR--FRYPGE---GWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV  158 (243)
T ss_dssp             EEETTTTE----EEEE--EECSSC---CCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEECCcCc----EEEE--EeCCCC---ceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence            99998877    3322  221111   1223333567888877 56899999998753 222211 1111111 123345


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCc---eeEcccccc-c------c--CceEEEEe--CCeEEEEecCCCeEEEEecc
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDD---WKEVVKSDL-L------K--GARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~---W~~v~~~~~-~------~--~~~~~~~~--~g~i~v~gg~~~~i~~~d~~  356 (387)
                      +|+||+-...+..|.+.|+++++   |..+..+.+ .      .  ...+++..  ++++||.|..=..++...+.
T Consensus       159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            88999876667899999999875   444443311 1      1  12333332  57888887665777766665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.27  E-value=0.00012  Score=64.41  Aligned_cols=193  Identities=7%  Similarity=-0.161  Sum_probs=115.7

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ..+...++.||+..|..+     .+.+.++|+.|++-..--+++..-.....+..+++||++...+        +.+.+|
T Consensus        46 qGL~~~~~~LyestG~~g-----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~--------~~v~v~  112 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG-----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN--------GLGFVW  112 (262)
T ss_dssp             EEEEEETTEEEEEEEETT-----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS--------SEEEEE
T ss_pred             ceEEEECCEEEEECCCCC-----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC--------CEEEEE
Confidence            455556889999988533     2468999999997665434443222344667789999985433        388999


Q ss_pred             ECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCce-eeccccc-ccCCCC-cEEEEeC
Q 016552          220 DLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW-DDMREGM-VRGWRG-PVAAMDE  295 (387)
Q Consensus       220 d~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~-~~~~~~-~~~~~~~  295 (387)
                      |+.+.+    -. +++ .+  ..   ....+.-++++|+..| .+.+..+|+++.+= ..++... ...... ..+...+
T Consensus       113 D~~t~~----~~~ti~-~~--~e---G~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~  181 (262)
T 3nol_A          113 NIRNLR----QVRSFN-YD--GE---GWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD  181 (262)
T ss_dssp             ETTTCC----EEEEEE-CS--SC---CCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred             ECccCc----EEEEEE-CC--CC---ceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence            998887    33 222 21  11   1223333456887776 46899999998653 2333210 111111 1234458


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCce---eEcccccc-c-------cCceEEEEe--CCeEEEEecCCCeEEEEecc
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDW---KEVVKSDL-L-------KGARHAAAG--GGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W---~~v~~~~~-~-------~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~  356 (387)
                      |+||+-...++.|.+.|+++++=   ..+..+.+ .       ....+++..  ++++||.|..=..++...+.
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            89998776678999999999853   33432211 1       112333332  47788886665666666554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.26  E-value=6.5e-05  Score=70.12  Aligned_cols=179  Identities=18%  Similarity=0.130  Sum_probs=101.6

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCC-EEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      .+|+.++.+       ..+.+||..+++-...-...  ......+. -++ .||+.++.+.        .+.+||..+++
T Consensus         3 ~l~vs~~~d-------~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d~--------~i~v~d~~~~~   65 (391)
T 1l0q_A            3 FAYIANSES-------DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSN--------DVSIIDTATNN   65 (391)
T ss_dssp             EEEEEETTT-------TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTE
T ss_pred             EEEEEcCCC-------CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCCC--------eEEEEECCCCe
Confidence            466666532       36899999887654422211  11122222 244 5777775543        78999998887


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEE--CCE-EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~  300 (387)
                          -...-..+..      ...+.+  +|+ +|+.+.....+.+||+.+++-...-.   .......+++.  +..||+
T Consensus        66 ----~~~~~~~~~~------v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           66 ----VIATVPAGSS------PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---TGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             ----EEEEEECSSS------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEE
T ss_pred             ----EEEEEECCCC------ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---CCCCcceEEECCCCCEEEE
Confidence                4433222221      222222  454 66665555789999999886533221   11112233332  345777


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEEE-EeCC-eEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+..++.|.+||.++.+.......  ......+. ..++ .|++.+..++.+.++|+.+.
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            877788999999988765543322  11122222 2344 46677677788999999864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.26  E-value=0.0001  Score=64.94  Aligned_cols=149  Identities=18%  Similarity=0.135  Sum_probs=100.0

Q ss_pred             EEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECC
Q 016552          192 GCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       192 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ...++.+|+..|...      .+.+.++|+++++    =...-+++...+.   ...+..+++||+.....+.+.+||++
T Consensus        49 ~~~~~~LyestG~~g------~S~v~~vD~~Tgk----v~~~~~l~~~~Fg---eGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           49 FYRNGYFYESTGLNG------RSSIRKVDIESGK----TLQQIELGKRYFG---EGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEETTEEEEEEEETT------EEEEEEECTTTCC----EEEEEECCTTCCE---EEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             EEECCEEEEECCCCC------CceEEEEECCCCc----EEEEEecCCccce---eEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            344889999988643      2478899999998    4443345543332   34566789999998777899999998


Q ss_pred             CCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeE-ccc--ccc-ccCceEEEEeCCeEEEEecC
Q 016552          272 ANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKE-VVK--SDL-LKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       272 ~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~-v~~--~~~-~~~~~~~~~~~g~i~v~gg~  346 (387)
                      +.+=. +++. ..   .+-+++..+++||+.++ +++|+.+|+++.+=.. +..  ... ....--+...+|+||+-.-.
T Consensus       116 t~~~~~ti~~-~~---eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~  190 (262)
T 3nol_A          116 NLRQVRSFNY-DG---EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ  190 (262)
T ss_dssp             TCCEEEEEEC-SS---CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred             cCcEEEEEEC-CC---CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence            87543 3332 12   33456666778888876 6789999999864332 221  111 12111244558999977667


Q ss_pred             CCeEEEEeccCC
Q 016552          347 GGGIVVVDVKAA  358 (387)
Q Consensus       347 ~~~i~~~d~~~~  358 (387)
                      .+.|.++|+.+.
T Consensus       191 ~~~I~vIDp~tG  202 (262)
T 3nol_A          191 TNKIVRIDPETG  202 (262)
T ss_dssp             SSEEEEECTTTC
T ss_pred             CCeEEEEECCCC
Confidence            889999999865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.25  E-value=0.0003  Score=61.89  Aligned_cols=185  Identities=13%  Similarity=-0.017  Sum_probs=105.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.||+... .       ..+++||+.++............ -...+. -++++|+.....        ..+.+||..+.
T Consensus        77 ~g~l~v~~~-~-------~~i~~~d~~~~~~~~~~~~~~~~-p~~i~~~~~g~l~v~~~~~--------~~i~~~~~~~~  139 (270)
T 1rwi_B           77 AGTVYVTDF-N-------NRVVTLAAGSNNQTVLPFDGLNY-PEGLAVDTQGAVYVADRGN--------NRVVKLAAGSK  139 (270)
T ss_dssp             TCCEEEEET-T-------TEEEEECTTCSCCEECCCCSCSS-EEEEEECTTCCEEEEEGGG--------TEEEEECTTCC
T ss_pred             CCCEEEEcC-C-------CEEEEEeCCCceEeeeecCCcCC-CcceEECCCCCEEEEECCC--------CEEEEEECCCc
Confidence            467887653 1       36899999887655543211111 122222 267899875432        26778877666


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEEe-CCeEEEEe
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMD-EEVLYGID  302 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~-~~~ly~~~  302 (387)
                      .    .......... ..  ...++.-+|++|+.......+.+||+....-.....   ..... ..+++. +|.||+.+
T Consensus       140 ~----~~~~~~~~~~-~p--~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          140 T----QTVLPFTGLN-DP--DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             S----CEECCCCSCC-SC--CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEE
T ss_pred             e----eEeeccccCC-Cc--eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEE
Confidence            5    4433211100 11  111222368899887655689999998765433221   11112 234443 45899988


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...+.|.+||+++..-..... ........++. -+|+||+....++.|.+|+....
T Consensus       210 ~~~~~v~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          210 HNTNQVVKLLAGSTTSTVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTTSCEEEECTTCSCCEECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCcEEEEcCCCCcceeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            767789999998764332211 11222333333 35789998888889999998743

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.20  E-value=0.00051  Score=62.75  Aligned_cols=188  Identities=13%  Similarity=-0.010  Sum_probs=100.6

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC--------cceeEEE--eCCEEEEEecCCCCCCCCCcceE
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR--------RWCAAGC--SRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r--------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      +.+|+.+...       ..+.++|+.+++-...-+.+...        .....+.  .++.+|+.+....       ..+
T Consensus       101 ~~l~v~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-------~~i  166 (353)
T 3vgz_A          101 QTLWFGNTVN-------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-------SVI  166 (353)
T ss_dssp             TEEEEEETTT-------TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-------CEE
T ss_pred             CEEEEEecCC-------CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-------ceE
Confidence            3477765521       36899999988653321221111        1112222  2346888763222       368


Q ss_pred             EEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeCCeEEEEECCCCceeecccccccCC--CCcEEEE
Q 016552          217 EKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGW--RGPVAAM  293 (387)
Q Consensus       217 ~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~--~~~~~~~  293 (387)
                      .+||..+.+    -...-+.... ..  ...+..-+|+ +|+... ...+.+||+.+++-...-.....+.  ....+++
T Consensus       167 ~~~d~~~~~----~~~~~~~~~~-~~--~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          167 WVVDGGNIK----LKTAIQNTGK-MS--TGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             EEEETTTTE----EEEEECCCCT-TC--CCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred             EEEcCCCCc----eEEEecCCCC-cc--ceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence            999998877    3322111111 11  0223333554 666544 4688999998875322211011111  1112333


Q ss_pred             e--CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          294 D--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      .  ++.+|+.+...+.+.+||+++.+-......+..  ......-+|+ +|+....++.+.++|..+.
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            3  556888876678999999988765443332221  2223344554 7777667889999999854

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00049  Score=63.36  Aligned_cols=191  Identities=14%  Similarity=0.062  Sum_probs=111.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--C--CEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--R--GAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      ++..++.|+.+       ..+.+||..+.++..+..+........+...  +  +++++.|+.+.        .+.+||.
T Consensus        22 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEECC-------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC--------EEEEEEc
Confidence            35566666643       2578899887777665444433222222222  2  67777777644        6889999


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe---
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---  294 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---  294 (387)
                      .+++    |..+..+......   ..++.+  +  +.+.+.++.+..+.+||..+..-..............+++..   
T Consensus        87 ~~~~----~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           87 ENGR----WSQIAVHAVHSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             ETTE----EEEEEEECCCSSC---EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             CCCc----eeEeeeecCCCcc---eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            9998    7766544322111   223333  3  567777777778999999876322111100111111223322   


Q ss_pred             -----------CCeEEEEeCCCCeEEEEeCCCCc--eeEccccccccCceEEEE--eC---CeEEEEecCCCeEEEEecc
Q 016552          295 -----------EEVLYGIDENSCTLSRYDEVMDD--WKEVVKSDLLKGARHAAA--GG---GRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 -----------~~~ly~~~~~~~~l~~yd~~~~~--W~~v~~~~~~~~~~~~~~--~~---g~i~v~gg~~~~i~~~d~~  356 (387)
                                 ++.+++.++.++.|..||..+..  |..+..+.........+.  .+   +++++.++..+.+.+||+.
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       46777777778899999986543  544444433333332333  34   6888888888889999998


Q ss_pred             CC
Q 016552          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       240 ~~  241 (379)
T 3jrp_A          240 NE  241 (379)
T ss_dssp             ST
T ss_pred             CC
Confidence            64

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.17  E-value=0.00049  Score=64.10  Aligned_cols=164  Identities=13%  Similarity=0.085  Sum_probs=97.5

Q ss_pred             ccEEEeccCC--ceeeCCCCCCCC--------cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC
Q 016552          165 RPLIFDPICR--TWTFGPELVTPR--------RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG  234 (387)
Q Consensus       165 ~~~vyd~~t~--~W~~l~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~  234 (387)
                      .++.+|+.++  .|+.-...+...        .....+..++.||+.+. +        ..+.++|..+++..  |..-.
T Consensus       199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~--------g~l~~~d~~tG~~~--w~~~~  267 (376)
T 3q7m_A          199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-N--------GNLTALDLRSGQIM--WKREL  267 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-T--------SCEEEEETTTCCEE--EEECC
T ss_pred             EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-C--------cEEEEEECCCCcEE--eeccC
Confidence            5888999876  576532222111        12334456788888642 1        25788999888755  87542


Q ss_pred             CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEe
Q 016552          235 ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYD  312 (387)
Q Consensus       235 ~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd  312 (387)
                      .  .      ....+..++.+|+.... ..+.+||+.+++  |+.-..  . .....+.++.++.||+.. ..+.|+++|
T Consensus       268 ~--~------~~~~~~~~~~l~~~~~~-g~l~~~d~~tG~~~w~~~~~--~-~~~~~~~~~~~~~l~v~~-~~g~l~~~d  334 (376)
T 3q7m_A          268 G--S------VNDFIVDGNRIYLVDQN-DRVMALTIDGGVTLWTQSDL--L-HRLLTSPVLYNGNLVVGD-SEGYLHWIN  334 (376)
T ss_dssp             C--C------EEEEEEETTEEEEEETT-CCEEEEETTTCCEEEEECTT--T-TSCCCCCEEETTEEEEEC-TTSEEEEEE
T ss_pred             C--C------CCCceEECCEEEEEcCC-CeEEEEECCCCcEEEeeccc--C-CCcccCCEEECCEEEEEe-CCCeEEEEE
Confidence            1  1      13355668899987643 379999998874  865421  1 111223445688888765 367899999


Q ss_pred             CCCCc--eeEccccccccCceEEEEeCCeEEEEecCCCeEEEEec
Q 016552          313 EVMDD--WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       313 ~~~~~--W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      +++++  |+.-......  ....+..++.||+. ..++.++.||.
T Consensus       335 ~~tG~~~~~~~~~~~~~--~~~~~~~~~~l~v~-~~~G~l~~~~~  376 (376)
T 3q7m_A          335 VEDGRFVAQQKVDSSGF--QTEPVAADGKLLIQ-AKDGTVYSITR  376 (376)
T ss_dssp             TTTCCEEEEEECCTTCB--CSCCEEETTEEEEE-BTTSCEEEEEC
T ss_pred             CCCCcEEEEEecCCCcc--eeCCEEECCEEEEE-eCCCEEEEEeC
Confidence            98875  5432111111  12234458888876 44556887763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.17  E-value=9.8e-05  Score=68.90  Aligned_cols=179  Identities=16%  Similarity=0.094  Sum_probs=99.5

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CC-EEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RG-AVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      .||+.++.+       ..+.+||..+++....-+.+.  .....+.. ++ .||+.+..+        ..+.+||..+++
T Consensus        45 ~l~~~~~~d-------~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~--------~~v~v~d~~~~~  107 (391)
T 1l0q_A           45 KVYVANAHS-------NDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT  107 (391)
T ss_dssp             EEEEEEGGG-------TEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE
T ss_pred             EEEEECCCC-------CeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCC--------CEEEEEECCCCe
Confidence            466666533       368999998887654322222  21222222 33 567765432        378999999887


Q ss_pred             cccCeEEcCCCCCCCccccceEEEE--ECCE-EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~  300 (387)
                          -...-.....      ...+.  -+|+ +|+.+.....+.+||+.+++....-.   .+.....+++.  ++.||+
T Consensus       108 ----~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          108 ----VAGTVKTGKS------PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---VGRSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             ----EEEEEECSSS------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CCSSEEEEEECTTSSEEEE
T ss_pred             ----EEEEEeCCCC------cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---cCCCcceEEECCCCCEEEE
Confidence                4433222211      12222  2454 66776656789999998886543321   11111233332  446777


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEE-EEeCCeEEEEec---CCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCE---NGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~g~i~v~gg---~~~~i~~~d~~~~  358 (387)
                      .+..++.|.+||.++.+-......  ......+ ..-+|+.+++++   ....+.+||+.+.
T Consensus       175 ~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            777778999999988754433221  1111222 233455444444   5688999998854

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.14  E-value=0.00025  Score=62.47  Aligned_cols=185  Identities=11%  Similarity=0.002  Sum_probs=101.9

Q ss_pred             CCEEEE-EecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLIL-LAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v-~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.+|+ ....       ...+.+||+.+......+..........+..-++++||... +        ..+.+||+...
T Consensus        34 ~g~l~v~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~--------~~i~~~d~~~~   97 (270)
T 1rwi_B           34 AGNVYVTSEGM-------YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N--------NRVVTLAAGSN   97 (270)
T ss_dssp             TCCEEEEECSS-------SCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-T--------TEEEEECTTCS
T ss_pred             CCCEEEEccCC-------CCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-C--------CEEEEEeCCCc
Confidence            567888 4221       14688899887765554322111111112223578998864 2        26788998877


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEE
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGI  301 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~  301 (387)
                      .    .......... .    ...+.+  +|++|+.......+.+||..+........ .... ....+++. +|+||+.
T Consensus        98 ~----~~~~~~~~~~-~----p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~-~p~~i~~~~~g~l~v~  166 (270)
T 1rwi_B           98 N----QTVLPFDGLN-Y----PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLN-DPDGVAVDNSGNVYVT  166 (270)
T ss_dssp             C----CEECCCCSCS-S----EEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCC-SCCCEEECTTCCEEEE
T ss_pred             e----EeeeecCCcC-C----CcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCC-CceeEEEeCCCCEEEE
Confidence            6    4443311101 1    222333  67899886555689999877665433221 0101 11234443 5789998


Q ss_pred             eCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEeccCC
Q 016552          302 DENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 ~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +...+.|.+||+++..-..... ........++. -+|.||+....++.|.++|..+.
T Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             EGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             ECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            7666789999998775433221 11222333333 35689988777788999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.12  E-value=0.00028  Score=62.17  Aligned_cols=148  Identities=9%  Similarity=-0.011  Sum_probs=99.0

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEE
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYD  269 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD  269 (387)
                      .....++.||+..|...        .+.++|+++++.    ...- ++...+.   ...+..+++||+.....+.+.+||
T Consensus        59 GL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv----~~~~-l~~~~Fg---eGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           59 GLVFHQGHFFESTGHQG--------TLRQLSLESAQP----VWME-RLGNIFA---EGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEEETTEEEEEETTTT--------EEEECCSSCSSC----SEEE-ECTTCCE---EEEEECSSCEEEEESSSCEEEEEE
T ss_pred             eEEEECCEEEEEcCCCC--------EEEEEECCCCcE----EeEE-CCCCcce---eEEEEeCCEEEEEEccCCEEEEEE
Confidence            34455789999988754        388999999982    2222 4433232   335667889999987778999999


Q ss_pred             CCCCcee-ecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeE-cc--cccc-ccCceEEEEeCCeEEEEe
Q 016552          270 VVANTWD-DMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKE-VV--KSDL-LKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       270 ~~~~~W~-~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~-v~--~~~~-~~~~~~~~~~~g~i~v~g  344 (387)
                      +++.+=. +++. .+.   +-+++..+++||+.++ +++|..+|+++.+=.. +.  ..+. .....-+...+|+||+-.
T Consensus       123 ~~Tl~~~~ti~~-~~e---GwGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv  197 (268)
T 3nok_A          123 GMPPQRERTTRY-SGE---GWGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI  197 (268)
T ss_dssp             TTTTEEEEEEEC-SSC---CCCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CCcCcEEEEEeC-CCc---eeEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE
Confidence            9987543 3333 233   3456667888999876 7899999999874332 21  1111 112223445699999766


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      -..+.|.++|+.+.
T Consensus       198 w~s~~I~vIDp~TG  211 (268)
T 3nok_A          198 WHSSDVLEIDPATG  211 (268)
T ss_dssp             TTCSEEEEECTTTC
T ss_pred             CCCCeEEEEeCCCC
Confidence            66789999999865

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.11  E-value=0.00068  Score=59.73  Aligned_cols=191  Identities=12%  Similarity=-0.005  Sum_probs=113.9

Q ss_pred             cceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEE
Q 016552          138 LPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       138 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      +...+...++.||+..|..+       .+.++|+.|++-..-- ++..-.....+..+++||++...+        +.+.
T Consensus        56 ftqGL~~~~~~Ly~stG~~g-------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~--------~~v~  119 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQG-------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE--------GLLF  119 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTT-------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS--------CEEE
T ss_pred             ccceEEEECCEEEEEcCCCC-------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC--------CEEE
Confidence            33466667899999988533       3889999998754432 443222334666788999985433        3889


Q ss_pred             EEECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCcee-ecccc-cccCCC-CcEEEE
Q 016552          218 KWDLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWD-DMREG-MVRGWR-GPVAAM  293 (387)
Q Consensus       218 ~yd~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~-~~~~~~-~~~~~~  293 (387)
                      +||+.+.+    -. +++--+.+      ...+.-+++||+..| ...+..+|+++.+=. .+... .+.... -..+..
T Consensus       120 V~D~~Tl~----~~~ti~~~~eG------wGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          120 TWSGMPPQ----RERTTRYSGEG------WGLCYWNGKLVRSDG-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             EEETTTTE----EEEEEECSSCC------CCEEEETTEEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEECCcCc----EEEEEeCCCce------eEEecCCCEEEEECC-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            99998877    33 22211111      223444677888876 568999999987532 22210 111111 112334


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCCCc---eeEccccc-cc------c--CceEEEEe--CCeEEEEecCCCeEEEEec
Q 016552          294 DEEVLYGIDENSCTLSRYDEVMDD---WKEVVKSD-LL------K--GARHAAAG--GGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       294 ~~~~ly~~~~~~~~l~~yd~~~~~---W~~v~~~~-~~------~--~~~~~~~~--~g~i~v~gg~~~~i~~~d~  355 (387)
                      .+|+||+-...++.|.+.|+++++   |..+..+. ..      .  ...+++..  ++++||.|..=..++...+
T Consensus       189 ~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          189 ANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             ETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             eCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            588999876667899999999985   44444221 11      1  12333332  4778888665566655543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.10  E-value=0.00048  Score=61.15  Aligned_cols=152  Identities=19%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             eEEEeC-CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEE
Q 016552          190 AAGCSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVY  268 (387)
Q Consensus       190 ~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~y  268 (387)
                      ..+..+ +.+|+..|...      .+.+.++|+.+++    =...-+++...+.   ...+..++++|+.....+.+.+|
T Consensus        25 Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~----v~~~i~l~~~~fg---eGi~~~g~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYG------RSSVRQVALQTGK----VENIHKMDDSYFG---EGLTLLNEKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             EEEECSTTEEEEEECSTT------TCEEEEEETTTCC----EEEEEECCTTCCE---EEEEEETTEEEEEETTCSEEEEE
T ss_pred             cEEEeCCCeEEEECCCCC------CCEEEEEECCCCC----EEEEEecCCCcce---EEEEEeCCEEEEEEecCCEEEEE
Confidence            334444 79999877422      2488999999998    4433334332232   34555688999998777899999


Q ss_pred             ECCCCce-eecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeE-cc--ccc-cccCceEEEEeCCeEEEE
Q 016552          269 DVVANTW-DDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKE-VV--KSD-LLKGARHAAAGGGRVCAV  343 (387)
Q Consensus       269 D~~~~~W-~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~-v~--~~~-~~~~~~~~~~~~g~i~v~  343 (387)
                      |+++.+= .+++.+.+.   +..++..+++||+..+ ++.|..+|+++.+=.. +.  ..+ +......+...+|+||+-
T Consensus        92 D~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn  167 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDG-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN  167 (266)
T ss_dssp             ETTTTEEEEEEECCSSS---CCEEEECSSSEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred             ECCCCcEEEEEECCCCC---eEEEEECCCEEEEECC-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence            9987642 233321122   3456666778998774 7799999998864322 22  111 122233444458999988


Q ss_pred             ecCCCeEEEEeccCC
Q 016552          344 CENGGGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~~~i~~~d~~~~  358 (387)
                      ....+.|.++|+.+.
T Consensus       168 ~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          168 IWQTDCIARISAKDG  182 (266)
T ss_dssp             ETTSSEEEEEETTTC
T ss_pred             cCCCCeEEEEECCCC
Confidence            777889999999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.04  E-value=0.00085  Score=62.41  Aligned_cols=197  Identities=10%  Similarity=0.072  Sum_probs=111.2

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCC-------CCCcceeEEEeCCEEEEEecCCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELV-------TPRRWCAAGCSRGAVYVASGIGSQFSSD  211 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~  211 (387)
                      ..++.++.||+....        ..++.||+.|+  .|+.-.+..       ........+..+++||+....       
T Consensus        48 ~p~v~~~~v~~~~~~--------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------  112 (376)
T 3q7m_A           48 HPALADNVVYAADRA--------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------  112 (376)
T ss_dssp             CCEEETTEEEEECTT--------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------
T ss_pred             ccEEECCEEEEEcCC--------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-------
Confidence            456678899987531        26899999876  576532211       112234455678899985421       


Q ss_pred             CcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc--eeecccccccCC-CC
Q 016552          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGW-RG  288 (387)
Q Consensus       212 ~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~-~~  288 (387)
                        ..+.++|..+++..  |+.-..-.  ..    ...+..++.+|+.... ..+.+||+++++  |+.-........ ..
T Consensus       113 --g~l~a~d~~tG~~~--W~~~~~~~--~~----~~p~~~~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          113 --AQVYALNTSDGTVA--WQTKVAGE--AL----SRPVVSDGLVLIHTSN-GQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             --SEEEEEETTTCCEE--EEEECSSC--CC----SCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             --CEEEEEECCCCCEE--EEEeCCCc--eE----cCCEEECCEEEEEcCC-CeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence              36889999988755  87543211  11    2234568888876543 479999998774  875432111111 11


Q ss_pred             cEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEcccccccc--------CceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          289 PVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSDLLK--------GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~~~~--------~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+.++.++.+|+ +...+.+++||++++  .|+.-...+...        .....+..++.+|+. ..+..++.+|..++
T Consensus       182 ~~~~~~~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTAFGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-AYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEETTEEEE-CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE-CTTSCEEEEETTTC
T ss_pred             CCcEEECCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-ecCcEEEEEECCCC
Confidence            334455777766 444678999999866  476532211100        112223346666665 34456777777533


Q ss_pred             CCCCceEEe
Q 016552          359 AAPTIFVVD  367 (387)
Q Consensus       359 ~~~~~W~~~  367 (387)
                        ...|...
T Consensus       260 --~~~w~~~  266 (376)
T 3q7m_A          260 --QIMWKRE  266 (376)
T ss_dssp             --CEEEEEC
T ss_pred             --cEEeecc
Confidence              1346653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.02  E-value=0.0023  Score=56.75  Aligned_cols=181  Identities=8%  Similarity=0.012  Sum_probs=102.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC-CCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT-PRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+|+....       ...+++||+. ++.+... ++. .......+.. ++++|+.....        ..+.+||+ +
T Consensus        67 ~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~d~-~  128 (299)
T 2z2n_A           67 DGEVWFTENA-------ANKIGRITKK-GIIKEYT-LPNPDSAPYGITEGPNGDIWFTEMNG--------NRIGRITD-D  128 (299)
T ss_dssp             TSCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEECT-T
T ss_pred             CCCEEEeCCC-------CCeEEEECCC-CcEEEEe-CCCcCCCceeeEECCCCCEEEEecCC--------ceEEEECC-C
Confidence            5677776432       1357888886 4444432 121 1112222222 57899875432        26788898 6


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEe-CCeEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEVLY  299 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~ly  299 (387)
                      ++    ..... .+....   .......  +|.+|+.......+..||+ +++......  +.....+ .+++. +|.||
T Consensus       129 g~----~~~~~-~~~~~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~  197 (299)
T 2z2n_A          129 GK----IREYE-LPNKGS---YPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI--PTPASGPVGITKGNDDALW  197 (299)
T ss_dssp             CC----EEEEE-CSSTTC---CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSEE
T ss_pred             CC----EEEec-CCCCCC---CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC--CCCCCcceeEEECCCCCEE
Confidence            55    55433 111111   1223333  5789987654468999999 777665421  1111122 34443 57899


Q ss_pred             EEeCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEecc
Q 016552          300 GIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       300 ~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      +.+...+.|..||+ ++....+...........++. -+|+||+....++.+..+|+.
T Consensus       198 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          198 FVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            98766778999999 776665432212222333333 357888876667889999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.02  E-value=0.0013  Score=58.40  Aligned_cols=188  Identities=11%  Similarity=0.005  Sum_probs=103.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+|+.....      ...+.+||+..+.-..+...........+..-++++||.....        ..+.+||+....
T Consensus        88 ~g~l~v~~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~~~~g~~  153 (286)
T 1q7f_A           88 SGDIIVTERSP------THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--------MRVIIFDQNGNV  153 (286)
T ss_dssp             TTEEEEEECGG------GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--------TEEEEECTTSCE
T ss_pred             CCeEEEEcCCC------CCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCC--------CEEEEEcCCCCE
Confidence            67888876321      1368889965554444322111111112222367899875432        367889876554


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEE-eCCeEEEE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAM-DEEVLYGI  301 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~-~~~~ly~~  301 (387)
                          ...+........    ...+.+  +|++|+.+.....+.+||+....-..+... . .... ..+++ .+|.||+.
T Consensus       154 ----~~~~~~~~~~~~----p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~-g-~~~~p~~i~~d~~G~l~v~  223 (286)
T 1q7f_A          154 ----LHKFGCSKHLEF----PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE-G-ITNYPIGVGINSNGEILIA  223 (286)
T ss_dssp             ----EEEEECTTTCSS----EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT-T-TSCSEEEEEECTTCCEEEE
T ss_pred             ----EEEeCCCCccCC----cEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC-C-ccCCCcEEEECCCCCEEEE
Confidence                333321111101    223333  588998876567899999876544443321 0 0112 23444 36789998


Q ss_pred             eCCCC-eEEEEeCCCCceeEccccccccCceE-EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          302 DENSC-TLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 ~~~~~-~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +...+ .|.+||++...-..+........... ++.-+|++|+.. .+..|.+|+....
T Consensus       224 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~~~v~v~~~~~~  281 (286)
T 1q7f_A          224 DNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQL  281 (286)
T ss_dssp             ECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEECSCC
T ss_pred             eCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEEC-CCCeEEEEEcccc
Confidence            86665 89999987654444432211112222 333478888884 5678999988743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.01  E-value=0.00045  Score=65.31  Aligned_cols=187  Identities=12%  Similarity=-0.011  Sum_probs=102.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC---CCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV---TPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p---~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      ++.+++.++.+       ..+.+||+.+++.....+..   .........  ..++++|+.++.+.        .+.+||
T Consensus       133 ~~~~~~~~~~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~--------~v~~~d  197 (433)
T 3bws_A          133 NTRLAIPLLED-------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN--------AVHVFD  197 (433)
T ss_dssp             SSEEEEEBTTS-------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT--------EEEEEE
T ss_pred             CCeEEEEeCCC-------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC--------EEEEEE
Confidence            56777776532       35899999988776543321   222112222  23678888877543        789999


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-e
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-V  297 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~  297 (387)
                      ..+.+    -...-..... ..  ...+..-++ .+|+.+..+..+.+||+.+++....-.   .......+++. ++ .
T Consensus       198 ~~~~~----~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~  267 (433)
T 3bws_A          198 LKTLA----YKATVDLTGK-WS--KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---KIGLPRGLLLSKDGKE  267 (433)
T ss_dssp             TTTCC----EEEEEECSSS-SE--EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC---CCSEEEEEEECTTSSE
T ss_pred             CCCce----EEEEEcCCCC-Ce--eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec---CCCCceEEEEcCCCCE
Confidence            98876    3322111111 10  011222244 466665555789999998876533211   11111223332 34 5


Q ss_pred             EEEEeC-------CCCeEEEEeCCCCceeEccccccccCceEEEEeCC-eEEEEecCCCeEEEEeccCC
Q 016552          298 LYGIDE-------NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~-------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      |++.+.       .++.|.+||+.+.+-......+... ......-++ .+++.+...+.+.+||+.+.
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK-RHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE-EEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc-ceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            555442       2568999999887544332211111 112222344 57788777889999999854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.99  E-value=0.0012  Score=62.81  Aligned_cols=191  Identities=13%  Similarity=0.071  Sum_probs=111.8

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ..++..++.+++.|+.++       .+.+||..+++-..  .+........+...++..++.|+.+.        .+.+|
T Consensus       176 v~~l~~~~~~l~sg~~dg-------~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg--------~i~vw  238 (435)
T 1p22_A          176 VLCLQYDERVIITGSSDS-------TVRVWDVNTGEMLN--TLIHHCEAVLHLRFNNGMMVTCSKDR--------SIAVW  238 (435)
T ss_dssp             EEEEECCSSEEEEEETTS-------CEEEEESSSCCEEE--EECCCCSCEEEEECCTTEEEEEETTS--------CEEEE
T ss_pred             EEEEEECCCEEEEEcCCC-------eEEEEECCCCcEEE--EEcCCCCcEEEEEEcCCEEEEeeCCC--------cEEEE
Confidence            344555777888877543       58899998875432  12222222233334556667776544        77889


Q ss_pred             ECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEE
Q 016552          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY  299 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly  299 (387)
                      |..+...   ......+....   ....++..++...+.++.+..+.+||..+.+-...-...  .....++.. ++.++
T Consensus       239 d~~~~~~---~~~~~~~~~~~---~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~-~~~~l  309 (435)
T 1p22_A          239 DMASPTD---ITLRRVLVGHR---AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQY-RDRLV  309 (435)
T ss_dssp             ECSSSSC---CEEEEEECCCS---SCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEE-ETTEE
T ss_pred             eCCCCCC---ceeeeEecCCC---CcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEe-CCCEE
Confidence            9887651   11101111110   113344557777777777778999999886432211101  111123334 45666


Q ss_pred             EEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          300 GIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       300 ~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.++.++.|..||.++..  .+...........++..+++.++.|+.++.|.+||+.+.
T Consensus       310 ~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          310 VSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             EEEeCCCeEEEEECCCCC--EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence            777778899999998763  222333333445556668888888888889999998743

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.99  E-value=0.0014  Score=62.43  Aligned_cols=174  Identities=14%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      .+.+||..+.+-..  .+........+...++..++.|+.+.        .+.+||..+.+    -...-.....     
T Consensus       260 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~----~~~~~~~~~~-----  320 (445)
T 2ovr_B          260 MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT--------SIRVWDVETGN----CIHTLTGHQS-----  320 (445)
T ss_dssp             CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCCS-----
T ss_pred             EEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCCC--------eEEEEECCCCC----EEEEEcCCcc-----
Confidence            45666666553221  11111112222333666666666544        67889998876    3221111111     


Q ss_pred             ceEEEEECCEEEEEeeeCCeEEEEECCCCceee-cccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcc-
Q 016552          245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVV-  322 (387)
Q Consensus       245 ~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~-  322 (387)
                      ...+...++.+.+.++.+..+.+||..+++-.. +...........+++. ++.+++.++.++.|.+||.++++....- 
T Consensus       321 ~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  399 (445)
T 2ovr_B          321 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRNLV  399 (445)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEEEECCCCceeeeee
Confidence            133444566666777766789999998765321 1110001111223334 5566777777899999999988654322 


Q ss_pred             cc--ccccCce-EEEE-eCCeEEEEecCCC----eEEEEeccCC
Q 016552          323 KS--DLLKGAR-HAAA-GGGRVCAVCENGG----GIVVVDVKAA  358 (387)
Q Consensus       323 ~~--~~~~~~~-~~~~-~~g~i~v~gg~~~----~i~~~d~~~~  358 (387)
                      ..  ....... .+.. -++.++++|+.++    .+.++|.+..
T Consensus       400 ~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          400 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             ccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            11  1122222 2222 3455556665444    4999999854

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.97  E-value=0.0033  Score=55.39  Aligned_cols=184  Identities=7%  Similarity=-0.086  Sum_probs=106.7

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.||+.-..       ...++++|+.+..-..+.+...... ...+..  +++||+.-..        ...+.++|+..
T Consensus        47 ~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~p-~~ia~d~~~~~lyv~d~~--------~~~I~~~~~~g  110 (267)
T 1npe_A           47 DKVVYWTDIS-------EPSIGRASLHGGEPTTIIRQDLGSP-EGIALDHLGRTIFWTDSQ--------LDRIEVAKMDG  110 (267)
T ss_dssp             TTEEEEEETT-------TTEEEEEESSSCCCEEEECTTCCCE-EEEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred             CCEEEEEECC-------CCEEEEEecCCCCcEEEEECCCCCc-cEEEEEecCCeEEEEECC--------CCEEEEEEcCC
Confidence            5688887532       2468999998765433221111111 222332  5799998532        23788898875


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeee--CCeEEEEECCCCceeecccccccCCCC-cEEEEe--CC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVK--GAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMD--EE  296 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~--~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~--~~  296 (387)
                      ..    -..+...... .+   ...++-  ++.||+....  ...+.++++....-+.+..   ..... ..+++.  ++
T Consensus       111 ~~----~~~~~~~~~~-~P---~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~---~~~~~P~gia~d~~~~  179 (267)
T 1npe_A          111 TQ----RRVLFDTGLV-NP---RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---DNLGLPNGLTFDAFSS  179 (267)
T ss_dssp             CS----CEEEECSSCS-SE---EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---TTCSCEEEEEEETTTT
T ss_pred             CC----EEEEEECCCC-Cc---cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE---CCCCCCcEEEEcCCCC
Confidence            54    3333211101 11   222222  6889998754  3578899887543332221   11112 234443  57


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          297 VLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +||+.+...+.|.++|+++..-..+..  ....+..++.-++.||+....++.|.++|..+.
T Consensus       180 ~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          180 QLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence            899998878899999998653222221  223345556668899998777889999999854

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.95  E-value=0.0013  Score=58.41  Aligned_cols=189  Identities=11%  Similarity=0.087  Sum_probs=104.7

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC---CC-CcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV---TP-RRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p---~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ++.+|+.....       ..+.+||+..+....++...   .. ..-...+.  .++++||.+....       ..+.+|
T Consensus        40 ~g~l~v~~~~~-------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~-------~~i~~~  105 (286)
T 1q7f_A           40 QNDIIVADTNN-------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-------HQIQIY  105 (286)
T ss_dssp             TCCEEEEEGGG-------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-------CEEEEE
T ss_pred             CCCEEEEECCC-------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-------CEEEEE
Confidence            46788875432       35889998866544443211   11 11122333  3679999864211       367889


Q ss_pred             ECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEe-CCe
Q 016552          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEV  297 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~  297 (387)
                      |.....    -..+...... ..  ...++.-+|++|+.+.....+.+||+.......+..  ......+ .+++. +|+
T Consensus       106 d~~g~~----~~~~~~~~~~-~~--~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          106 NQYGQF----VRKFGATILQ-HP--RGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC--SKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             CTTSCE----EEEECTTTCS-CE--EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--TTTCSSEEEEEECSSSE
T ss_pred             CCCCcE----EEEecCccCC-Cc--eEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCC--CCccCCcEEEEECCCCC
Confidence            854443    3333211101 11  011222368899886655689999987654444321  1111122 33433 578


Q ss_pred             EEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCC-eEEEEeccC
Q 016552          298 LYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGG-GIVVVDVKA  357 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~-~i~~~d~~~  357 (387)
                      +|+.+...+.|.+||++...-..+...........++. -+|+||+....++ .|.+||...
T Consensus       177 l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             EEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             EEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence            99987667899999997765444433211222333333 4688998876665 899999764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.90  E-value=0.0024  Score=58.54  Aligned_cols=190  Identities=14%  Similarity=0.146  Sum_probs=106.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcc-eeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..++++..+..+...... ...+ .-++++++.|+.+.        .+.+||..+
T Consensus        19 ~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--------~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECSS-------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEEET
T ss_pred             CCCEEEEEeCC-------CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC--------eEEEEECCC
Confidence            45666666532       3689999999877665554432222 2222 22566777776543        678899988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCc-eeecccccccCCC--CcEEEEe-CCe
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWR--GPVAAMD-EEV  297 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~--~~~~~~~-~~~  297 (387)
                      .+    +.....+.....   ...++.+  ++++++.++.+..+.+||..+.. |..... ...+..  ..+++.. ++.
T Consensus        84 ~~----~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~  155 (372)
T 1k8k_C           84 RT----WKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-IKKPIRSTVLSLDWHPNSV  155 (372)
T ss_dssp             TE----EEEEEECCCCSS---CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-ECTTCCSCEEEEEECTTSS
T ss_pred             Ce----eeeeEEeecCCC---ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee-eecccCCCeeEEEEcCCCC
Confidence            87    765443221111   1223332  56666777666778888887654 332221 111111  2233332 556


Q ss_pred             EEEEeCCCCeEEEEeCCCC----------------ceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          298 LYGIDENSCTLSRYDEVMD----------------DWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~----------------~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++.++.++.+..||....                .-..+............+.  .+++.++.++..+.+.+||+.+.
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            7777777889999996421                1112222222222222333  36778888788888999999854

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.87  E-value=0.0046  Score=54.81  Aligned_cols=182  Identities=8%  Similarity=-0.025  Sum_probs=102.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.+|+....       ...+++||+. +++...............+. -++++|+.....        ..+..||+. +
T Consensus        72 ~g~l~v~~~~-------~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~i~~~~~~-g  134 (300)
T 2qc5_A           72 LGDIWFTENG-------ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG--------DRIGKLTAD-G  134 (300)
T ss_dssp             TSCEEEEETT-------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTT--------TEEEEECTT-S
T ss_pred             CCCEEEEecC-------CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCC--------CeEEEECCC-C
Confidence            4678876431       1358899988 66654321111111222222 267899875322        267888887 5


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEe-CCeEEE
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~ly~  300 (387)
                      +    ..... ++....   ......  -+|++|+.......+.+||+ +++......  +.....+ .+++. +|.||+
T Consensus       135 ~----~~~~~-~~~~~~---~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v  203 (300)
T 2qc5_A          135 T----IYEYD-LPNKGS---YPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPL--PTNAAAPVGITSGNDGALWF  203 (300)
T ss_dssp             C----EEEEE-CSSTTC---CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECTTSSEEE
T ss_pred             C----EEEcc-CCCCCC---CceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeC--CCCCCCcceEEECCCCCEEE
Confidence            5    55432 221111   122333  35789987654568999999 666655432  1111222 33343 578999


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEecc
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      .....+.|.+||+ ++....+...........++. -+|+||+....++.|..+|+.
T Consensus       204 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          204 VEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            8766678999999 555555432212222333333 357888887667889999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.0018  Score=59.51  Aligned_cols=194  Identities=8%  Similarity=0.012  Sum_probs=106.8

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--C--CEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--R--GAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      +.+++.|+.+       ..+.+||..+++|..+..+............  +  +.+++.|+.+.        .+.+||..
T Consensus        69 ~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--------~i~v~d~~  133 (379)
T 3jrp_A           69 GTILASCSYD-------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG--------KVSVVEFK  133 (379)
T ss_dssp             CSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS--------EEEEEECC
T ss_pred             CCEEEEeccC-------CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC--------cEEEEecC
Confidence            5666666643       2589999999988765554433222222222  3  56777776544        78889988


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEE---------------CCEEEEEeeeCCeEEEEECCCCc--eeecccccccC
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW---------------KGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRG  285 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---------------~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~  285 (387)
                      +..... -..+......      ..++..               ++.+++.++.+..+.+||..++.  |..+.......
T Consensus       134 ~~~~~~-~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~  206 (379)
T 3jrp_A          134 ENGTTS-PIIIDAHAIG------VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  206 (379)
T ss_dssp             TTSCCC-EEEEECCTTC------EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             CCCcee-eEEecCCCCc------eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence            774100 0111111101      112222               46777777777789999986553  44332211111


Q ss_pred             CCCcEEEEe-C---CeEEEEeCCCCeEEEEeCCCCceeEc---cccccccCceE--EEEeCCeEEEEecCCCeEEEEecc
Q 016552          286 WRGPVAAMD-E---EVLYGIDENSCTLSRYDEVMDDWKEV---VKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       286 ~~~~~~~~~-~---~~ly~~~~~~~~l~~yd~~~~~W~~v---~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      ....+++.. +   +.+++.++.++.+..||..+......   ...........  ....+++.+++++.++.+.+||+.
T Consensus       207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            112233333 3   57777777788999999887632111   11111222222  233467777787778889999988


Q ss_pred             CCCCCCceE
Q 016552          357 AAAAPTIFV  365 (387)
Q Consensus       357 ~~~~~~~W~  365 (387)
                      ..   ..|.
T Consensus       287 ~~---~~~~  292 (379)
T 3jrp_A          287 LE---GKWE  292 (379)
T ss_dssp             ET---TEEE
T ss_pred             CC---Cccc
Confidence            43   3676

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.85  E-value=0.0022  Score=56.89  Aligned_cols=183  Identities=8%  Similarity=-0.038  Sum_probs=101.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.||+....       ...++++|+ +++................+. -++++|+....        ...+.+||+ ++
T Consensus       109 ~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~-~g  171 (299)
T 2z2n_A          109 NGDIWFTEMN-------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ--------NNAIGRITE-SG  171 (299)
T ss_dssp             TSCEEEEETT-------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--------TTEEEEECT-TC
T ss_pred             CCCEEEEecC-------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--------CCEEEEEcC-CC
Confidence            4678876532       135788998 666554321111111122222 25689886432        136788999 77


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEe-CCeEEE
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD-EEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~ly~  300 (387)
                      +    ..... .+....   ......+  +|.+|+.......+.+||+ +++......  +.....+ .+++. +|.||+
T Consensus       172 ~----~~~~~-~~~~~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v  240 (299)
T 2z2n_A          172 D----ITEFK-IPTPAS---GPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI--PTPNARPHAITAGAGIDLWF  240 (299)
T ss_dssp             C----EEEEE-CSSTTC---CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTTCEEE
T ss_pred             c----EEEee-CCCCCC---cceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC--CCCCCCceeEEECCCCCEEE
Confidence            6    66542 111111   1223333  5789987654568999999 777665422  1111122 33343 568998


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .....+.|..||+. .....+...........++..+|.||+... ++.+..+|+.+.
T Consensus       241 ~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          241 TEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             eccCCceEEEECCC-CceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence            87667889999994 444443221111223333336678888754 678999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.84  E-value=0.002  Score=58.10  Aligned_cols=183  Identities=11%  Similarity=0.042  Sum_probs=102.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcce-eEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWC-AAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++..++.|+.+       ..+.+||..+++......+....... ..+ .-+++.++.|+.+.        .+.+||..+
T Consensus       108 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC--------cEEEEeCCC
Confidence            45566666532       36889999888754433333222211 222 22566666766543        678999988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYG  300 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~  300 (387)
                      .+    ....-......     ...+.+  ++..++.++.+..+.+||+.+.+-...-.   ......+++. .++.+++
T Consensus       173 ~~----~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          173 QT----LVRQFQGHTDG-----ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             TE----EEEEECCCSSC-----EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEE
T ss_pred             Cc----eeeeeecccCc-----eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEE
Confidence            76    43322111111     223333  66666777766789999998775322211   1111123333 3566777


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++..++.+..||.++..=..+.   .......  ....+++.++.++..+.+.+||+.+.
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEcCCCcEEEEECCCCCeEEEc---CCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence            7777889999999876432221   1222222  22335778888788888999998865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.83  E-value=0.0039  Score=55.97  Aligned_cols=186  Identities=13%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeE--EEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAA--GCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..+.+-..  .+.........  ..-++++++.|+.+.        .+.+||..+
T Consensus        76 ~~~~l~s~~~d-------~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~  138 (312)
T 4ery_A           76 DSNLLVSASDD-------KTLKIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVKT  138 (312)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTCCEEE--EEECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEECCC-------CEEEEEECCCCcEEE--EEcCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCC
Confidence            45666666643       357889988765322  11111111111  122456777776644        688999987


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYG  300 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~  300 (387)
                      .+    -...-.....     ...++.+  ++++++.++.+..+.+||..+.+-...-. .........++. .+++.++
T Consensus       139 ~~----~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  208 (312)
T 4ery_A          139 GK----CLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYIL  208 (312)
T ss_dssp             CC----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEE
T ss_pred             CE----EEEEecCCCC-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEE
Confidence            76    3222111111     1222322  56777777777789999998775432111 001111112222 2456666


Q ss_pred             EeCCCCeEEEEeCCCCceeEcccc-cccc-C-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKS-DLLK-G-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~-~~~~-~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.++.+..||..+.+-...-.. .... . .......++++++.|+..+.|.+||+.+.
T Consensus       209 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             EEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            666788999999987643322111 1111 1 12222346777788777888999999865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.81  E-value=0.00054  Score=64.77  Aligned_cols=178  Identities=11%  Similarity=0.099  Sum_probs=98.8

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      .++++|+.+++++.+..++........+ .-++++++.++.+.        .+.+||..+++    .......+......
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--------~i~~~d~~~g~----~~~~~~~~~~~~~~  169 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDE--------GMDVLDINSGQ----TVRLSPPEKYKKKL  169 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSS--------SEEEEETTTCC----EEEECCCHHHHTTC
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCC--------eEEEEECCCCe----EeeecCcccccccC
Confidence            6788888877666654444332211222 22678888876533        68999999888    55433221100000


Q ss_pred             cceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCcee
Q 016552          244 EAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWK  319 (387)
Q Consensus       244 ~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~  319 (387)
                      ....++.+  ++++++.++.+..+.+||+.+++-...-.  ........+++.  ++.+|+.+..++.|.+||+++.+..
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~  247 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI  247 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE
Confidence            11223333  78888887776789999998765332111  111111233333  4567777767789999999887554


Q ss_pred             EccccccccCceEEE-EeCCeEEEEec--------CCCeEEEEeccCC
Q 016552          320 EVVKSDLLKGARHAA-AGGGRVCAVCE--------NGGGIVVVDVKAA  358 (387)
Q Consensus       320 ~v~~~~~~~~~~~~~-~~~g~i~v~gg--------~~~~i~~~d~~~~  358 (387)
                      ....  .......+. ..+|+.+++++        .+..+.+||+.+.
T Consensus       248 ~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          248 RKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             EEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            3222  111122222 23555444444        2457889998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.81  E-value=0.0023  Score=56.77  Aligned_cols=181  Identities=11%  Similarity=0.068  Sum_probs=102.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcce-eEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWC-AAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+|+....       ...+.+||+. ++....+ ++...... ..+. -++++|+.....        ..+..||+. 
T Consensus        30 ~g~l~v~~~~-------~~~v~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~--------~~v~~~d~~-   91 (300)
T 2qc5_A           30 DGKVWFTQHK-------ANKISSLDQS-GRIKEFE-VPTPDAKVMCLIVSSLGDIWFTENGA--------NKIGKLSKK-   91 (300)
T ss_dssp             TSCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETTT--------TEEEEECTT-
T ss_pred             CCCEEEEcCC-------CCeEEEECCC-CceEEEE-CCCCCCcceeEEECCCCCEEEEecCC--------CeEEEECCC-
Confidence            5678886431       1368889988 6666532 12111112 2222 357898875322        267889988 


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEE-eCCeEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAM-DEEVLY  299 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~-~~~~ly  299 (387)
                      ++    +.... ++....   ....+.+  +|++|+.......+..||+. ++......  +..... ..+++ .+|+||
T Consensus        92 g~----~~~~~-~~~~~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--~~~~~~~~~i~~d~~g~l~  160 (300)
T 2qc5_A           92 GG----FTEYP-LPQPDS---GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDL--PNKGSYPAFITLGSDNALW  160 (300)
T ss_dssp             SC----EEEEE-CSSTTC---CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEEC--SSTTCCEEEEEECTTSSEE
T ss_pred             CC----eEEec-CCCCCC---CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccC--CCCCCCceeEEECCCCCEE
Confidence            66    65443 221111   1223333  68899876545689999998 65554321  111112 23333 357799


Q ss_pred             EEeCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEecc
Q 016552          300 GIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       300 ~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      +.+...+.|++||+ +++...+...........++. -+|.||+....+..+.++|..
T Consensus       161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence            98766778999999 666665432222222333333 367888886667788888884

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.001  Score=68.29  Aligned_cols=191  Identities=14%  Similarity=0.063  Sum_probs=111.7

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--C--CEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--R--GAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      ++..++.|+.+       ..+.+||..++++..+..+........+...  +  +..++.|+.+.        .+.+||.
T Consensus        20 dg~~latg~~d-------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg--------~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETT-------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCeEEEEECC-------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC--------eEEEEEC
Confidence            35556666543       3578899887777766555433322222222  3  67777777654        7889999


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe---
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---  294 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---  294 (387)
                      .++.    |..+..+......   ..++.+  +  +.+++.++.+..+.+||..++.-..............+++..   
T Consensus        85 ~~~~----~~~~~~~~~h~~~---V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           85 ENGR----WSQIAVHAVHSAS---VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             ETTE----EEEEEEECCCSSC---EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             CCCc----ccccccccCCCCC---eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            9988    7766544322111   223333  3  667777777789999999876322111100001111222222   


Q ss_pred             -----------CCeEEEEeCCCCeEEEEeCCCC--ceeEccccccccCceEEEE--eC---CeEEEEecCCCeEEEEecc
Q 016552          295 -----------EEVLYGIDENSCTLSRYDEVMD--DWKEVVKSDLLKGARHAAA--GG---GRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 -----------~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~~~~~~~~~~~--~~---g~i~v~gg~~~~i~~~d~~  356 (387)
                                 ++.+++.++.++.|..||..++  .+..+..+.........+.  .+   +++++.|+..+.|.+||+.
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                       3566777777889999998664  3444443333333333333  33   6888888888889999998


Q ss_pred             CC
Q 016552          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       238 ~~  239 (753)
T 3jro_A          238 NE  239 (753)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.77  E-value=0.016  Score=52.55  Aligned_cols=188  Identities=11%  Similarity=-0.011  Sum_probs=109.6

Q ss_pred             eEEEEE--CCEEEEEecccCCCCCCCCccEEEeccC----CceeeC-C-CCCCCCcceeEEE--eCCEEEEEecCCCCCC
Q 016552          140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPIC----RTWTFG-P-ELVTPRRWCAAGC--SRGAVYVASGIGSQFS  209 (387)
Q Consensus       140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t----~~W~~l-~-~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~  209 (387)
                      .+.+..  ++.||+....       ...++++|+.+    ..-..+ + .+..|   ...++  .+++||++-..     
T Consensus        33 ~g~~~d~~~~~ly~~D~~-------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~-----   97 (316)
T 1ijq_A           33 VALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV-----   97 (316)
T ss_dssp             EEEEEETTTTEEEEEETT-------TTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT-----
T ss_pred             EEEEEEeCCCEEEEEECC-------CCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC-----
Confidence            344443  5789988542       24688898876    222222 1 12222   12333  47899998432     


Q ss_pred             CCCcceEEEEECCCCccccCeEEcC--CCCCCCccccceEEEE--ECCEEEEEeeeC-CeEEEEECCCCceeeccccccc
Q 016552          210 SDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVR  284 (387)
Q Consensus       210 ~~~~~~v~~yd~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~  284 (387)
                         ...+.++|+....    -..+.  .+..+      ...++  .+|.||+..... ..|+++|+....=+.+..   .
T Consensus        98 ---~~~I~~~~~~g~~----~~~~~~~~~~~P------~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~---~  161 (316)
T 1ijq_A           98 ---LGTVSVADTKGVK----RKTLFRENGSKP------RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---E  161 (316)
T ss_dssp             ---TTEEEEEETTSSS----EEEEEECTTCCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---S
T ss_pred             ---CCEEEEEeCCCCc----eEEEEECCCCCc------ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE---C
Confidence               2478889987654    33322  12211      12222  368899886433 589999986543332211   1


Q ss_pred             CCCC-cEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          285 GWRG-PVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       285 ~~~~-~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .... .++++.  +++||+.+...+.|.++|.+...=+.+... .....+.+++..++.||+.-..+..|..+|..++
T Consensus       162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence            1112 244554  689999998788999999986544444332 2234456667778999999777889999998644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.77  E-value=0.0098  Score=55.76  Aligned_cols=183  Identities=10%  Similarity=-0.043  Sum_probs=109.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC--CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE--LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.||+.--       ....++++++.....+.+..  +..|. ..+....+++||+.-..        .+.++++++..
T Consensus       127 ~~~ly~~D~-------~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~--------~~~I~~~~~dg  190 (386)
T 3v65_B          127 RELVFWSDV-------TLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSG--------TSRIEVANLDG  190 (386)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETT--------TTEEEECBTTS
T ss_pred             CCeEEEEeC-------CCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCC--------CCeEEEEeCCC
Confidence            578888743       22468999998876655422  22222 11122247899998432        23778888765


Q ss_pred             CccccCeEEcC--CCCCCCccccceEEEE--ECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCC-cEEEE--eC
Q 016552          224 GEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRG-PVAAM--DE  295 (387)
Q Consensus       224 ~~~~~~W~~~~--~~p~~~~~~~~~~~~~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~--~~  295 (387)
                      ..    -..+.  .+..+      ...++  .+|.||+..... ..|+++|+....-..+..   .+... .++++  .+
T Consensus       191 ~~----~~~l~~~~l~~P------~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGlavd~~~  257 (386)
T 3v65_B          191 AH----RKVLLWQSLEKP------RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYAG  257 (386)
T ss_dssp             CS----CEEEECSSCSCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEEEGGG
T ss_pred             Cc----eEEeecCCCCCC------cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCeeeEEEeCCC
Confidence            54    33332  12111      11222  268899886554 689999987643333221   11111 23444  47


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++||+.+...+.|+++|.+...=+.+... ....+.+++..++.||+.-..+..|..+|..++
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTSCSCEEEECS-SCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEECCCCEEEEEeCCCCeeEEEEEC-CCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            89999998788999999876433333221 233456667788999999877888999985433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.77  E-value=0.0061  Score=55.38  Aligned_cols=186  Identities=10%  Similarity=-0.011  Sum_probs=101.9

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +.+++.|+.+       ..+.+||..+.+-...-..........+..-+++.++.|+.+.        .+.+||..+.+ 
T Consensus        92 ~~~l~s~s~D-------~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg--------~v~i~~~~~~~-  155 (321)
T 3ow8_A           92 LPIAASSSLD-------AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG--------KVNIFGVESGK-  155 (321)
T ss_dssp             SSEEEEEETT-------SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS--------EEEEEETTTCS-
T ss_pred             CCEEEEEeCC-------CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC--------cEEEEEcCCCc-
Confidence            4455555533       3578889887754321111111111222233566777766543        77889988776 


Q ss_pred             ccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCC
Q 016552          227 NSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENS  305 (387)
Q Consensus       227 ~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~  305 (387)
                         -...-..... ..  ...+..-+|++.+.++.+..+.+||..+++-...-.  .......+++. .++++++.++.+
T Consensus       156 ---~~~~~~~~~~-~v--~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          156 ---KEYSLDTRGK-FI--LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE--GHAMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             ---EEEEEECSSS-CE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCCCEEEECTTSCEEEEECTT
T ss_pred             ---eeEEecCCCc-eE--EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--ccCCceeEEEEcCCCCEEEEEcCC
Confidence               2211111111 10  011222367777777777889999998875322111  01111223443 356777777778


Q ss_pred             CeEEEEeCCCCceeEccccccccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          306 CTLSRYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       306 ~~l~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.|.+||..+..-..  .+.........+  ..+++.++.|+....+.+||+.+.
T Consensus       228 g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          228 GYIKIYDVQHANLAG--TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             SCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CeEEEEECCCcceeE--EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            899999998764432  222222222222  236778888888888999999854

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.76  E-value=0.0064  Score=55.27  Aligned_cols=185  Identities=10%  Similarity=0.030  Sum_probs=100.9

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      +.+++.|+.+.       .+.++|..+.+......+........++  ..++.+.+.|+.+.        .+.+||..++
T Consensus        48 ~~~l~tgs~D~-------~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~--------~i~lWd~~~~  112 (321)
T 3ow8_A           48 SETVVTGSLDD-------LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA--------HIRLWDLENG  112 (321)
T ss_dssp             -CEEEEEETTS-------CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--------EEEEEETTTT
T ss_pred             CCEEEEEcCCC-------CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC--------cEEEEECCCC
Confidence            34666666433       4677777665543322222222111122  22456666766644        7889999887


Q ss_pred             ccccCeEE-cCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEe
Q 016552          225 EKNSRWEK-TGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGID  302 (387)
Q Consensus       225 ~~~~~W~~-~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~  302 (387)
                      +    -.. +..-+....    ..+..-+++..+.++....+.+||..+++-...-.  .......+++. .++++++.+
T Consensus       113 ~----~~~~~~~~~~~~~----~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          113 K----QIKSIDAGPVDAW----TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD--TRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             E----EEEEEECCTTCCC----CEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE--CSSSCEEEEEECTTSSEEEEE
T ss_pred             C----EEEEEeCCCccEE----EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec--CCCceEEEEEECCCCCEEEEE
Confidence            6    322 221111110    22233366766676666789999988765321111  11111122332 356777777


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.++.|..||.++.+-.  ..+......  ......++++++.|+....|.+||+.+.
T Consensus       183 ~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLL--HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             ETTSCEEEEETTTTEEE--EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             cCCCeEEEEECCCCcEE--EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence            77889999999887432  222222222  2233446788888888888999999854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.75  E-value=0.0056  Score=57.31  Aligned_cols=174  Identities=9%  Similarity=-0.040  Sum_probs=97.0

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      .+.+||..+++..............+.+. -+++++++|+.+.        .+.+||..+.+    -...-.....    
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------~i~iwd~~~~~----~~~~~~~~~~----  177 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG--------LVDIYDVESQT----KLRTMAGHQA----  177 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCSS----
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC--------eEEEEECcCCe----EEEEecCCCC----
Confidence            68999999887766544332222222222 2566777766543        67899998877    3332211111    


Q ss_pred             cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEcc
Q 016552          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVV  322 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~  322 (387)
                       ...++..++.+++.++.+..+.+||.....-..... ........+++.. ++.+++.++.++.|.+||..+..-..  
T Consensus       178 -~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--  253 (401)
T 4aez_A          178 -RVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF--  253 (401)
T ss_dssp             -CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE--
T ss_pred             -ceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE--
Confidence             133445577777777777899999998433111110 0011111223332 56677777778899999998753222  


Q ss_pred             ccccccCc-eEEEEe--CCeEEEEec--CCCeEEEEeccCC
Q 016552          323 KSDLLKGA-RHAAAG--GGRVCAVCE--NGGGIVVVDVKAA  358 (387)
Q Consensus       323 ~~~~~~~~-~~~~~~--~g~i~v~gg--~~~~i~~~d~~~~  358 (387)
                      ........ .++...  ++.+++.|+  ....+.+||+.+.
T Consensus       254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            11112222 222222  456777765  4678999998854

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.74  E-value=0.0024  Score=58.60  Aligned_cols=189  Identities=8%  Similarity=0.021  Sum_probs=98.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..++++.....+.... .....+ .-+++.++.|+.+.        .+.+||..+
T Consensus        63 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~v~i~d~~~  127 (372)
T 1k8k_C           63 DSNRIVTCGTD-------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR--------VISICYFEQ  127 (372)
T ss_dssp             TTTEEEEEETT-------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS--------SEEEEEEET
T ss_pred             CCCEEEEEcCC-------CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--------EEEEEEecC
Confidence            45666666643       35889999888876543322222 112222 22566667766543        567777766


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCc---------eee-------cccccccC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT---------WDD-------MREGMVRG  285 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~---------W~~-------~~~~~~~~  285 (387)
                      ...   |........+..  ....++.+  ++.+++.++.+..+.+||.....         |..       +.......
T Consensus       128 ~~~---~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          128 END---WWVCKHIKKPIR--STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             TTT---EEEEEEECTTCC--SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             CCc---ceeeeeeecccC--CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            541   333222211111  11222322  66777777766789999964221         111       11100001


Q ss_pred             CCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCc--eEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          286 WRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       286 ~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ....+++. .++.+++.++.++.+..||.++.+-..  ........  .....-++++++.| .++.+.+||+..
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA--TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE--EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE--EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            01122333 255566666678899999998765332  22222222  22334467776665 777899999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.73  E-value=0.002  Score=58.03  Aligned_cols=183  Identities=10%  Similarity=0.014  Sum_probs=100.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+....-.............-+++.++.|+.+.        .+.+||..+.+
T Consensus       152 ~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~~~d~~~~~  216 (337)
T 1gxr_A          152 DSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN--------TVRSWDLREGR  216 (337)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE
T ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC--------cEEEEECCCCc
Confidence            45566666633       3588999988754432111111111111222566666766543        78899998876


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCC
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDEN  304 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~  304 (387)
                          -...-..+...    ......-+++++++++....+.+||..+..=.....   .......++.. ++++++.++.
T Consensus       217 ----~~~~~~~~~~v----~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          217 ----QLQQHDFTSQI----FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             ----EEEEEECSSCE----EEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC---CSSCEEEEEECTTSSEEEEEET
T ss_pred             ----eEeeecCCCce----EEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC---CccceeEEEECCCCCEEEEecC
Confidence                33222222111    011222367777777766789999998775332221   11111233332 4566677767


Q ss_pred             CCeEEEEeCCCCceeEccccccccCceE-EEEeCCeEEEEecCCCeEEEEecc
Q 016552          305 SCTLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       305 ~~~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      ++.+..||.++++-....  ........ ....+++.+++++..+.+.+||+.
T Consensus       286 dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          286 DNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            889999999887544221  11111122 223467788887778888888863

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.73  E-value=0.028  Score=51.87  Aligned_cols=183  Identities=8%  Similarity=-0.072  Sum_probs=110.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.||+.--       ....++++++.+...+.+........ ...++  .+++||+.-..        .+.++++++..
T Consensus        84 ~~~ly~~D~-------~~~~I~r~~~~g~~~~~~~~~~~~~p-~glavd~~~g~ly~~d~~--------~~~I~~~~~dG  147 (349)
T 3v64_C           84 RELVFWSDV-------TLDRILRANLNGSNVEEVVSTGLESP-GGLAVDWVHDKLYWTDSG--------TSRIEVANLDG  147 (349)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTSCSCEEEECSSCSCC-CEEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred             ccEEEEEec-------cCCceEEEecCCCCceEEEeCCCCCc-cEEEEecCCCeEEEEcCC--------CCeEEEEcCCC
Confidence            578888743       22468889988776555322111111 12233  47899998432        23788888876


Q ss_pred             CccccCeEEcC--CCCCCCccccceEEEE--ECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCC-cEEEE--eC
Q 016552          224 GEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRG-PVAAM--DE  295 (387)
Q Consensus       224 ~~~~~~W~~~~--~~p~~~~~~~~~~~~~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~--~~  295 (387)
                      ..    -..+.  .+..+      ...++  .+|.||+..... ..|+++|+....-+.+..   .+... .++++  .+
T Consensus       148 ~~----~~~l~~~~l~~P------~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~~~~PnGla~d~~~  214 (349)
T 3v64_C          148 AH----RKVLLWQSLEKP------RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD---THLFWPNGLTIDYAG  214 (349)
T ss_dssp             CS----CEEEECTTCSCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC---SSCSCEEEEEEETTT
T ss_pred             Cc----eEEEEeCCCCCc------ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE---CCCCCcceEEEeCCC
Confidence            54    33332  12211      12223  268899887555 689999987654333321   11111 23454  37


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++||+.+...+.|+++|++...=+.+... ....+.+++..++.||+.-..+..|..+|..++
T Consensus       215 ~~lY~aD~~~~~I~~~~~dG~~~~~~~~~-~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          215 RRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEECCCCEEEEEeCCCCceEEEEeC-CCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            89999998788999999986533333221 133456666688999999878888999985433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.72  E-value=0.0065  Score=55.93  Aligned_cols=187  Identities=12%  Similarity=0.074  Sum_probs=99.2

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCC---CCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPEL---VTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~---p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      ..+..++.|+.+       ..+.+||..+++-......   .......+.+ .-+++.++.|+.+.        .+.+||
T Consensus        91 s~d~~l~~~s~d-------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~--------~i~iwd  155 (344)
T 4gqb_B           91 VGERGILVASDS-------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--------CIKVWD  155 (344)
T ss_dssp             ETTTEEEEEETT-------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEE
T ss_pred             eCCCeEEEEECC-------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEE
Confidence            344445555532       3578899887753221111   1111111222 23667777777654        688999


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEE--ECC-EEEEEeeeCCeEEEEECCCCceee-cccccccCCCCcEEEE--e
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKG-KLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAM--D  294 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g-~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~--~  294 (387)
                      ..+++    -...-.-...     ...++.  .++ .+++.++.+..+.+||..+.+-.. +.. ...+....+++.  .
T Consensus       156 ~~~~~----~~~~~~~h~~-----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          156 LAQQV----VLSSYRAHAA-----QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             TTTTE----EEEEECCCSS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSS
T ss_pred             CCCCc----EEEEEcCcCC-----ceEEEEecCCCCCceeeeccccccccccccccceeeeeec-ceeeccceeeeecCC
Confidence            98877    3221111111     122222  234 466667766789999998775432 211 111111223333  2


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--CC-eEEEEecCCCeEEEEeccCC
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--GG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++++++.+..++.|.+||.++.+  .+..+.........++.  ++ ++++.|+....|.+||..+.
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             CCcceEEeccCCcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            56778888778999999998753  22233223333333332  34 56666777788999998855

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.71  E-value=0.01  Score=55.43  Aligned_cols=189  Identities=9%  Similarity=0.002  Sum_probs=101.2

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      .++.+++.|+.+       ..+.+||..+++-...-.... ....+.+ .-++++++.|+.+.        .+.+||..+
T Consensus       107 ~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d~--------~i~iwd~~~  170 (420)
T 3vl1_A          107 LQMRRFILGTTE-------GDIKVLDSNFNLQREIDQAHV-SEITKLKFFPSGEALISSSQDM--------QLKIWSVKD  170 (420)
T ss_dssp             SSSCEEEEEETT-------SCEEEECTTSCEEEEETTSSS-SCEEEEEECTTSSEEEEEETTS--------EEEEEETTT
T ss_pred             cCCCEEEEEECC-------CCEEEEeCCCcceeeeccccc-CccEEEEECCCCCEEEEEeCCC--------eEEEEeCCC
Confidence            356677777643       257899988776544321111 1111222 22566667776544        789999987


Q ss_pred             CccccCeEEcCCCCCCCccccceEEE-EECCEEEEEeeeCCeEEEEECCCCceee-cccccccCCCCcEEEE--------
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAV-GWKGKLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAM--------  293 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~-~~~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~--------  293 (387)
                      .+.   -..+...... .    ...+ .-++.+.+.++.+..+.+||..+++-.. +............++.        
T Consensus       171 ~~~---~~~~~~h~~~-v----~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  242 (420)
T 3vl1_A          171 GSN---PRTLIGHRAT-V----TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL  242 (420)
T ss_dssp             CCC---CEEEECCSSC-E----EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred             CcC---ceEEcCCCCc-E----EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence            761   1122111111 0    1122 2266666677766789999998774321 1110000000011111        


Q ss_pred             --------------eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCe-EEEEecCCCeEEEEecc
Q 016552          294 --------------DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       294 --------------~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~-i~v~gg~~~~i~~~d~~  356 (387)
                                    .++++++.+..++.+..||..+..-..... .........+.  -+++ +++.|+..+.+.+||+.
T Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence                          256677777778899999998764222111 11222222222  3455 78887888899999998


Q ss_pred             CC
Q 016552          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       322 ~~  323 (420)
T 3vl1_A          322 SP  323 (420)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.71  E-value=0.0031  Score=56.99  Aligned_cols=147  Identities=10%  Similarity=0.072  Sum_probs=77.0

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCC-CccccCeEEcC----CCCCCCccccceEEEEECCE-EEEEeeeCCeEEEEE
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMN-GEKNSRWEKTG----ELKDGRFSREAIDAVGWKGK-LCLVNVKGAEGAVYD  269 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~~~~~W~~~~----~~p~~~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD  269 (387)
                      ..||+.+..+        ..+.+||..+ ++    ...+.    ..+.....  ...+..-+|+ +|+.+.....+.+||
T Consensus       141 ~~l~~~~~~~--------~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~pdg~~l~~~~~~~~~i~~~~  206 (343)
T 1ri6_A          141 RTLWVPALKQ--------DRICLFTVSDDGH----LVAQDPAEVTTVEGAGP--RHMVFHPNEQYAYCVNELNSSVDVWE  206 (343)
T ss_dssp             SEEEEEEGGG--------TEEEEEEECTTSC----EEEEEEEEEECSTTCCE--EEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEecCCC--------CEEEEEEecCCCc----eeeecccccccCCCCCc--ceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            3577765332        2688899887 55    54322    11111111  0112222554 676665557899999


Q ss_pred             CC--CCceeeccc--ccccCCC---Cc-EEEEe--CCeEEEEeCCCCeEEEEeCC--CCceeEccccccccCceE-EEEe
Q 016552          270 VV--ANTWDDMRE--GMVRGWR---GP-VAAMD--EEVLYGIDENSCTLSRYDEV--MDDWKEVVKSDLLKGARH-AAAG  336 (387)
Q Consensus       270 ~~--~~~W~~~~~--~~~~~~~---~~-~~~~~--~~~ly~~~~~~~~l~~yd~~--~~~W~~v~~~~~~~~~~~-~~~~  336 (387)
                      ..  ++++.....  ..+.+..   .+ .+++.  +..||+.+..++.+.+||.+  +++++.+...+....... ...-
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~  286 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH  286 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECC
Confidence            84  455433221  1222211   11 23333  34677776667889999987  566776655433222222 2333


Q ss_pred             CCe-EEEEecCCCeEEEEecc
Q 016552          337 GGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       337 ~g~-i~v~gg~~~~i~~~d~~  356 (387)
                      +|+ |++.+...+.+.+|+++
T Consensus       287 dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          287 SGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCEEEEecCCCCeEEEEEEc
Confidence            555 55554456778888554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.70  E-value=0.0023  Score=58.51  Aligned_cols=229  Identities=14%  Similarity=0.063  Sum_probs=117.8

Q ss_pred             CCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCCCCCCCccEEEeccCCce
Q 016552           97 STPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTW  176 (387)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W  176 (387)
                      +..+.++.+|..++++..+......       .+|.       .-+..-+++||+.+...     ....+++||..++++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~-------~~p~-------~~a~spdg~l~~~~~~~-----~~~~v~~~~~~~g~~   75 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAAT-------QNPT-------YLALSAKDCLYSVDKED-----DEGGIAAWQIDGQTA   75 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEEC-------SCCC-------CEEECTTCEEEEEEEET-----TEEEEEEEEEETTEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeecc-------CCcc-------eEEEccCCeEEEEEecC-----CCceEEEEEecCCcE
Confidence            4566788889988877654321110       0010       12233467777765421     124689999988887


Q ss_pred             eeCCCCCC--CCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECC-CCccccCeEEcCCCCC------CCccccce
Q 016552          177 TFGPELVT--PRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKD------GRFSREAI  246 (387)
Q Consensus       177 ~~l~~~p~--~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~~~~~W~~~~~~p~------~~~~~~~~  246 (387)
                      +.+.....  ......+..-++ .||+.+..+        ..+.+||.. ++.    ...+...+.      .+......
T Consensus        76 ~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~--------~~v~v~~~~~~g~----~~~~~~~~~~~~~p~~~~~~~~~  143 (347)
T 3hfq_A           76 HKLNTVVAPGTPPAYVAVDEARQLVYSANYHK--------GTAEVMKIAADGA----LTLTDTVQHSGHGPRPEQDGSHI  143 (347)
T ss_dssp             EEEEEEEEESCCCSEEEEETTTTEEEEEETTT--------TEEEEEEECTTSC----EEEEEEEECCCCCSSTTCSSCCE
T ss_pred             EEeeeeecCCCCCEEEEECCCCCEEEEEeCCC--------CEEEEEEeCCCCC----eeecceeecCCCCCCccccCCCc
Confidence            76654321  111222223344 577765322        267788874 333    333321111      00000012


Q ss_pred             EEE--EECCEEEEEeeeCCeEEEEECC-CCceeecccc-cccCCCCcEEEE-eCC-eEEEEeCCCCeEEEEeCC--CCce
Q 016552          247 DAV--GWKGKLCLVNVKGAEGAVYDVV-ANTWDDMREG-MVRGWRGPVAAM-DEE-VLYGIDENSCTLSRYDEV--MDDW  318 (387)
Q Consensus       247 ~~~--~~~g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~-~~~~~~~~~~~~-~~~-~ly~~~~~~~~l~~yd~~--~~~W  318 (387)
                      ..+  .-+|++|+.+.....+.+||+. +++...+... ...+.....+++ -+| .||+.+...+.+.+||.+  ++++
T Consensus       144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF  223 (347)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence            222  2377877766555789999988 5555543321 111111112333 244 488877667777777765  4666


Q ss_pred             eEcccccccc-------Cce-EEEEeCCe-EEEEecCCCeEEEEecc
Q 016552          319 KEVVKSDLLK-------GAR-HAAAGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       319 ~~v~~~~~~~-------~~~-~~~~~~g~-i~v~gg~~~~i~~~d~~  356 (387)
                      ..+.......       ... ....-+|+ ||+.....+.+.+||+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            5544322111       122 22334565 66776667889999986

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.69  E-value=0.0036  Score=56.96  Aligned_cols=181  Identities=13%  Similarity=0.019  Sum_probs=92.7

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeC-CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc-
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF-  241 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~-  241 (387)
                      ..++++|+.+.+-...-+... +....+..-+ +.+|+.+..+        ..+.+||..+.+    -...-+.+.... 
T Consensus        69 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~~~  135 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVN--------SAVTAIDAKTGE----VKGRLVLDDRKRT  135 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTT--------TEEEEEETTTCC----EEEEEESCCCCCC
T ss_pred             ccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCC--------CEEEEEeCCCCe----eEEEEecCCCccc
Confidence            468999998876544222221 1112222234 4588876543        278999998887    322221211100 


Q ss_pred             --c-ccceEEEEE--CC-EEEEEee-eCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCC
Q 016552          242 --S-REAIDAVGW--KG-KLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEV  314 (387)
Q Consensus       242 --~-~~~~~~~~~--~g-~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~  314 (387)
                        . ......+.+  +| .+|+.+. ....+.+||+.+.+-...-........+......++.||+.. .++.+.+||.+
T Consensus       136 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~i~~~d~~  214 (353)
T 3vgz_A          136 EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN-ADGELITIDTA  214 (353)
T ss_dssp             SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC-TTSEEEEEETT
T ss_pred             cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEc-CCCeEEEEECC
Confidence              0 000112222  44 5777663 346799999987753221110111111222222345566654 46789999998


Q ss_pred             CCceeEcccccc--ccC-ceEE-EEeC-CeEEEEecCCCeEEEEeccCC
Q 016552          315 MDDWKEVVKSDL--LKG-ARHA-AAGG-GRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       315 ~~~W~~v~~~~~--~~~-~~~~-~~~~-g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.+-........  ... ...+ ..-+ +.+|+....++.+.++|+.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          215 DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            875333222211  111 1222 2334 457777666789999999754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.69  E-value=0.016  Score=52.65  Aligned_cols=193  Identities=11%  Similarity=0.116  Sum_probs=103.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCC------CCCCcce-eEEEe--CCEEEEEecCCCCCCCCCcc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPEL------VTPRRWC-AAGCS--RGAVYVASGIGSQFSSDVAK  214 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~------p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~  214 (387)
                      ++.||+....       ...+.+||+..+  .-..+...      ......+ ..++.  ++.|||..+...       .
T Consensus       101 ~g~l~v~d~~-------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~-------~  166 (329)
T 3fvz_A          101 DGNYWVTDVA-------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN-------S  166 (329)
T ss_dssp             TSCEEEEETT-------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC-------C
T ss_pred             CCCEEEEECC-------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC-------C
Confidence            5678887542       246889998765  22222211      0111122 22332  679999975322       3


Q ss_pred             eEEEEECCCCccccCeEEcCCCCC------CCccccceEEEEE--C-CEEEEEeeeCCeEEEEECCCCceeecccccccC
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKD------GRFSREAIDAVGW--K-GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRG  285 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~------~~~~~~~~~~~~~--~-g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~  285 (387)
                      .+.+||+....    -..+.....      ..+.  ....+.+  + |.||+.......+.+||+.+++....-.....+
T Consensus       167 ~I~~~~~~g~~----~~~~~~~g~~~~~~~~~~~--~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~  240 (329)
T 3fvz_A          167 RIVQFSPSGKF----VTQWGEESSGSSPRPGQFS--VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG  240 (329)
T ss_dssp             EEEEECTTSCE----EEEECEECCSSSCCTTEES--CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT
T ss_pred             eEEEEcCCCCE----EEEeccCCCCCCCCCcccC--CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC
Confidence            78888854433    223321110      0111  1223333  4 899998877788999999977654321111111


Q ss_pred             CCCcEEEEeCCeEEEEeC-------CCCeEEEEeCCCCceeEccc-c-ccccCceEEE-EeCCeEEEEecCCCeEEEEec
Q 016552          286 WRGPVAAMDEEVLYGIDE-------NSCTLSRYDEVMDDWKEVVK-S-DLLKGARHAA-AGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       286 ~~~~~~~~~~~~ly~~~~-------~~~~l~~yd~~~~~W~~v~~-~-~~~~~~~~~~-~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      .....++...+.+|...+       ....+.+||..+++....-. . .....+..++ .-+|.||+....++.|.+|++
T Consensus       241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            111122333345555543       34479999988876554322 1 1222233333 346789999888889999998


Q ss_pred             cCC
Q 016552          356 KAA  358 (387)
Q Consensus       356 ~~~  358 (387)
                      ...
T Consensus       321 ~~~  323 (329)
T 3fvz_A          321 TEK  323 (329)
T ss_dssp             EEC
T ss_pred             Ccc
Confidence            743

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.69  E-value=0.0037  Score=56.17  Aligned_cols=188  Identities=9%  Similarity=0.007  Sum_probs=100.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++..++.|+.++       .+.+||..+.+....-.-. .......+ .-++++++.|+.+.        .+.+||..+.
T Consensus        34 ~~~~l~s~~~dg-------~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~--------~i~vwd~~~~   97 (312)
T 4ery_A           34 NGEWLASSSADK-------LIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDDK--------TLKIWDVSSG   97 (312)
T ss_dssp             TSSEEEEEETTS-------CEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTC
T ss_pred             CCCEEEEeeCCC-------eEEEEeCCCcccchhhccC-CCceEEEEEcCCCCEEEEECCCC--------EEEEEECCCC
Confidence            345566665332       5788888777655421111 11111122 22567777777644        7889999887


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeC
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDE  303 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~  303 (387)
                      +    -...-.-.....   .+....-++.+.+.++.+..+.+||+.+++-...-.  .......+++. .++.+++.+.
T Consensus        98 ~----~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           98 K----CLKTLKGHSNYV---FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             C----EEEEEECCSSCE---EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEE
T ss_pred             c----EEEEEcCCCCCE---EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec--CCCCcEEEEEEcCCCCEEEEEe
Confidence            6    322111111100   011122256666677777789999998765321111  00111122333 2566777777


Q ss_pred             CCCeEEEEeCCCCceeEcccccccc-CceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          304 NSCTLSRYDEVMDDWKEVVKSDLLK-GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~v~~~~~~~-~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.+..||..+..-.......... ........+++.++.++..+.+.+||+.+.
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            7889999999877543321111111 112223346777777777788999998754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.68  E-value=0.005  Score=54.90  Aligned_cols=190  Identities=8%  Similarity=0.012  Sum_probs=107.1

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCc--eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      +++++.+..+       ..+.++|+.|++  |+.-..-. ...+.....-+|++++.+  +        +.+.+||+ ++
T Consensus         5 ~~~lv~~~~~-------~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--~--------~~V~~~d~-~G   65 (276)
T 3no2_A            5 QHLLVGGSGW-------NKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--S--------KGAKMITR-DG   65 (276)
T ss_dssp             CEEEEECTTC-------SEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--B--------SEEEEECT-TS
T ss_pred             CcEEEeeCCC-------CEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--C--------CCEEEECC-CC
Confidence            5666665422       468889987774  66532110 123344455578888832  1        25888999 66


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeee-CCeEEEEECCCC-ceeec-cccc--ccCCCCcEEEEeCCeEE
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-GAEGAVYDVVAN-TWDDM-REGM--VRGWRGPVAAMDEEVLY  299 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~-~~~i~~yD~~~~-~W~~~-~~~~--~~~~~~~~~~~~~~~ly  299 (387)
                      +..  |+.-.+.....    ......-+|++++.... ...+..+|++.. .|+.. ....  +...........+|.++
T Consensus        66 ~~~--W~~~~~~~~~~----~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           66 REL--WNIAAPAGCEM----QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             CEE--EEEECCTTCEE----EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred             CEE--EEEcCCCCccc----cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence            544  77544211110    02233457888777654 457888898544 34422 1111  00111122334466777


Q ss_pred             EEeCCCCeEEEEeCCCC-ceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          300 GIDENSCTLSRYDEVMD-DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       300 ~~~~~~~~l~~yd~~~~-~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      +.....+.+.+||++.+ .|+.-..  . .........+|.+++++..+..++.+|+.++  .-.|+.
T Consensus       140 v~~~~~~~v~~~d~~G~~~w~~~~~--~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG--~~~w~~  202 (276)
T 3no2_A          140 VPLFATSEVREIAPNGQLLNSVKLS--G-TPFSSAFLDNGDCLVACGDAHCFVQLNLESN--RIVRRV  202 (276)
T ss_dssp             EEETTTTEEEEECTTSCEEEEEECS--S-CCCEEEECTTSCEEEECBTTSEEEEECTTTC--CEEEEE
T ss_pred             EEecCCCEEEEECCCCCEEEEEECC--C-CccceeEcCCCCEEEEeCCCCeEEEEeCcCC--cEEEEe
Confidence            77766789999999854 3543222  1 1112233447889988877888999999843  146876

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.0035  Score=57.21  Aligned_cols=187  Identities=13%  Similarity=0.103  Sum_probs=97.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..+.+-...  +..... ....+. -+++.++.|+.+.        .+.+||..+
T Consensus        43 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKD-------SSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSADY--------SIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESS-------SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTT--------EEEEEETTT
T ss_pred             CCCEEEEEeCC-------CEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCC
Confidence            45566666533       2578899877654331  221111 112222 2466667776544        788999988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCce----eecccccc---cCC----C
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTW----DDMREGMV---RGW----R  287 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W----~~~~~~~~---~~~----~  287 (387)
                      .+    -...-..+...    ......-+++.++.+...     ..+.+||..+..-    ........   ...    .
T Consensus       106 ~~----~~~~~~~~~~v----~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          106 GQ----CVATWKSPVPV----KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             CC----EEEEEECSSCE----EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             Cc----EEEEeecCCCe----EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            77    44332222111    011222355655555544     5788888765531    11110000   000    1


Q ss_pred             CcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          288 GPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       288 ~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..+++. .++++++.+..++.|.+||..++ ...+............+.  -+++.+++++....+.+||+.+.
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            112222 24556666667889999999873 122222222222222222  36778888777888999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.65  E-value=0.015  Score=54.67  Aligned_cols=183  Identities=13%  Similarity=0.064  Sum_probs=98.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.++       .+.+||..+.+-..  .+........++.  -++..++.|+.+.        .+.+||..+
T Consensus       161 ~~~~l~sgs~D~-------~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D~--------~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSADM-------TIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRDK--------TIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETTS-------CCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETTS--------EEEEEETTT
T ss_pred             CCCEEEEEeCCC-------eEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCC
Confidence            456777776433       46788887654322  2221111111222  2566677777654        788999988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE--------
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--------  293 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--------  293 (387)
                      +.    -...-.-...     ....+.  -+|.+++.++.+..+.+||..+......-.....  ...+++.        
T Consensus       224 ~~----~~~~~~~h~~-----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          224 GY----CVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYSS  292 (410)
T ss_dssp             CC----EEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGGG
T ss_pred             Cc----EEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc--eEEEEEEcCcccccc
Confidence            76    3321111111     012222  3567777777777899999887654321100000  0011111        


Q ss_pred             -------------eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 -------------DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 -------------~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                                   ..+.+++.++.++.|..||..+..  .+..+........  ....+|+.++.|+....|.+||..+.
T Consensus       293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                         124566677778899999998763  2222222222222  22346777788788889999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.64  E-value=0.0083  Score=53.67  Aligned_cols=187  Identities=13%  Similarity=0.112  Sum_probs=102.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEEEe---CCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      +++.++.|+.+.       .+.+||..+...+.+..+..... ..+.+..   ++++++.|+.+.        .+.+||.
T Consensus        20 ~g~~las~s~D~-------~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~--------~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSDK-------TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG--------KVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETTS-------CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT--------EEEEEEB
T ss_pred             CCCEEEEEeCCC-------EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC--------EEEEEEc
Confidence            466667776432       57888887654433322322211 1122221   266777777654        7889999


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCCc-eeecccccccCCC--CcEEEEe
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWR--GPVAAMD  294 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~--~~~~~~~  294 (387)
                      .++.    |..+..+.....   ...++.+  +  |.+.+.++.+..+.+||..+.. +....   ..+..  ..+++..
T Consensus        85 ~~~~----~~~~~~~~~h~~---~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~---~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           85 ENGR----WSQIAVHAVHSA---SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWA  154 (297)
T ss_dssp             SSSC----BCCCEEECCCSS---CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE---EECCSSCEEEEEEC
T ss_pred             CCCc----eEEEEEeecCCC---ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee---eecccCccceEeec
Confidence            8887    765442221111   1223333  2  5666677767789999987652 32110   00111  1111111


Q ss_pred             --------------CCeEEEEeCCCCeEEEEeCCCCc--eeEccccccccCceEEEEe--C---CeEEEEecCCCeEEEE
Q 016552          295 --------------EEVLYGIDENSCTLSRYDEVMDD--WKEVVKSDLLKGARHAAAG--G---GRVCAVCENGGGIVVV  353 (387)
Q Consensus       295 --------------~~~ly~~~~~~~~l~~yd~~~~~--W~~v~~~~~~~~~~~~~~~--~---g~i~v~gg~~~~i~~~  353 (387)
                                    ++++++.++.++.|..||..+..  |..+..+.........+..  +   +.+++.|+....+.++
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                          24567777778899999986643  5554444433333333333  2   3677777778889999


Q ss_pred             eccC
Q 016552          354 DVKA  357 (387)
Q Consensus       354 d~~~  357 (387)
                      |+.+
T Consensus       235 d~~~  238 (297)
T 2pm7_B          235 TQDN  238 (297)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            9875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.59  E-value=0.0079  Score=56.67  Aligned_cols=185  Identities=11%  Similarity=0.053  Sum_probs=99.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.|+.++       .+.+||..+.+-...-..............++++++.|+.+.        .+.+||..+.+
T Consensus       119 ~~~~l~s~s~Dg-------~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~--------~i~iwd~~~~~  183 (410)
T 1vyh_C          119 VFSVMVSASEDA-------TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM--------TIKLWDFQGFE  183 (410)
T ss_dssp             SSSEEEEEESSS-------CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS--------CCCEEETTSSC
T ss_pred             CCCEEEEEeCCC-------eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCc
Confidence            356677776432       588999888754331111111111111223567777777654        56788887655


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEe
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~  302 (387)
                          -...  +....   ....++.+  ++...+.++.+..+.+||..++.-...-.... . ....+.. .++.+++.+
T Consensus       184 ----~~~~--~~~h~---~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~-~-~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          184 ----CIRT--MHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-E-WVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             ----EEEC--CCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-S-CEEEEEECTTSSEEEEE
T ss_pred             ----eeEE--EcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-c-cEEEEEECCCCCEEEEE
Confidence                3221  21111   11223333  56666777777899999998875322111001 0 0112222 356777777


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCceEEEE----------------------eCCeEEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA----------------------GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~----------------------~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.++.+.+||..+..-...-  ........++.                      ..|.+++.|+....|.+||+.+.
T Consensus       253 s~D~~v~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  328 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             cCCCeEEEEECCCCceeeEe--cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            77889999999877544321  11111111111                      12667788778888999998854

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.59  E-value=0.036  Score=52.19  Aligned_cols=184  Identities=10%  Similarity=-0.068  Sum_probs=107.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCC----ceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICR----TWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~----~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ++.||+.-.       ....++++++...    ....+...... .-...++  .+++||++-..        ...++++
T Consensus       123 ~~~lywsD~-------~~~~I~~~~~~g~~~~~~~~~~~~~~~~-~p~glavD~~~~~lY~~d~~--------~~~I~~~  186 (400)
T 3p5b_L          123 SNRIYWSDL-------SQRMICSTQLDRAHGVSSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSV--------LGTVSVA  186 (400)
T ss_dssp             TTEEEEEET-------TTTEEEEEEC------CCCEEEECSSCS-CEEEEEEETTTTEEEEEETT--------TTEEEEE
T ss_pred             cCceEEEec-------CCCeEEEEEcccCCCCCcceEEEeCCCC-CcccEEEEecCCceEEEECC--------CCeEEEE
Confidence            578988743       2246788887652    12222111111 1112233  37899998433        2378889


Q ss_pred             ECCCCccccCeEEcCC--CCCCCccccceEEEE--ECCEEEEEeee-CCeEEEEECCCCceeecccccccCCCC-cEEEE
Q 016552          220 DLMNGEKNSRWEKTGE--LKDGRFSREAIDAVG--WKGKLCLVNVK-GAEGAVYDVVANTWDDMREGMVRGWRG-PVAAM  293 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~--~~g~lyv~gg~-~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~  293 (387)
                      |+....    -..+..  +..+      ...++  .+|.||+.... ...|+++|+....=..+..   ..... .++++
T Consensus       187 ~~~g~~----~~~l~~~~~~~P------~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~---~~l~~P~glav  253 (400)
T 3p5b_L          187 DTKGVK----RKTLFRENGSKP------RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGITL  253 (400)
T ss_dssp             CTTTCS----EEEEEECSSCCE------EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC---SSCSCEEEEEE
T ss_pred             eCCCCc----eEEEEeCCCCCc------ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE---CCCCceEEEEE
Confidence            887665    444431  2111      11222  36889988632 3679999987543222211   11111 23444


Q ss_pred             e--CCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 D--EEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .  +++||+.+.....|+++|.+...=+.+... .....+.+++..++.||+.-..+..|..+|..++
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          254 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred             EeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence            4  789999998788999999987644444332 2345567777789999999877888999986544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.58  E-value=0.0013  Score=60.83  Aligned_cols=184  Identities=8%  Similarity=0.039  Sum_probs=99.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEEE-eC-CEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGC-SR-GAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      ++..++.|+.++       .+.+||..+++-...  +..... ....+. .+ +.+++.++.+.        .+.+||..
T Consensus       150 dg~~l~sgs~dg-------~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg--------~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF-------SVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGEDG--------RILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS-------CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETTS--------CEEECCTT
T ss_pred             CCCEEEEEeCCC-------eEEEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccCC--------ceEEEECC
Confidence            456666666432       578899988764332  221111 111222 23 34677776644        67888888


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCe
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEV  297 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~  297 (387)
                      +.+    -..........   ....++.+   ++.+++.++.+..+.+||+.+.+=...-.  .......++++.  +++
T Consensus       213 ~~~----~~~~~~~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~  283 (357)
T 4g56_B          213 KPK----PATRIDFCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSP  283 (357)
T ss_dssp             SSS----CBCBCCCTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSC
T ss_pred             CCc----eeeeeeecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCC
Confidence            776    32222111111   11223333   35666677666789999988754211101  011112233332  345


Q ss_pred             EEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE---eCCeEEEEecCCCeEEEEeccCC
Q 016552          298 LYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA---GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~---~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++.++.++.|.+||.++.+-...  . ........++   .++++++.++....|.+||+.+.
T Consensus       284 ~lasgs~D~~i~iwd~~~~~~~~~--~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          284 FLASISEDCTVAVLDADFSEVFRD--L-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEE--C-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEEeCCCEEEEEECCCCcEeEE--C-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            556666788999999988754332  1 1222333333   36788888888888999998743

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.58  E-value=0.011  Score=60.70  Aligned_cols=188  Identities=9%  Similarity=-0.066  Sum_probs=101.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..+++|+.+       ..+.+||..+++....-.-........+..-+++..+.|+.+.        .+.+||..++.
T Consensus        66 ~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~~  130 (814)
T 3mkq_A           66 RKNWIIVGSDD-------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWENNW  130 (814)
T ss_dssp             GGTEEEEEETT-------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTS--------EEEEEEGGGTS
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCC--------EEEEEECCCCc
Confidence            45566666632       3689999988765432111111111112222555556665533        78899988762


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe---CCeEEE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---EEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---~~~ly~  300 (387)
                      .   ....-.-....    ....+..  ++.+++.++.+..+.+||..+..-...-. .........++..   ++.+++
T Consensus       131 ~---~~~~~~~~~~~----v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          131 A---LEQTFEGHEHF----VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             E---EEEEEECCSSC----EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECCSTTCCEEE
T ss_pred             e---EEEEEcCCCCc----EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEECCCCCEEE
Confidence            0   22221111110    0222232  46677777766789999987654321111 0111112333432   567777


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCce--EEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.++.+..||..+..-.  ..........  .....++.+++.|+..+.+.+||..+.
T Consensus       203 ~~~~dg~i~~~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCV--ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             EECTTSEEEEEETTTTEEE--EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCcEE--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            7777889999999876432  2222222222  223346778888777788999998854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.56  E-value=0.013  Score=54.69  Aligned_cols=191  Identities=13%  Similarity=0.102  Sum_probs=101.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceee-----CCCCCCCCc-ceeEEEe-CC-EEEEEecCCCCCCCCCcceEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF-----GPELVTPRR-WCAAGCS-RG-AVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~-----l~~~p~~r~-~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      ++.+++.|+.+       ..+.+||..++....     +..+..... ....+.. ++ .+++.|+.+.        .+.
T Consensus        93 ~~~~l~s~s~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg--------~i~  157 (402)
T 2aq5_A           93 NDNVIASGSED-------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN--------VIL  157 (402)
T ss_dssp             CTTEEEEEETT-------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS--------CEE
T ss_pred             CCCEEEEEeCC-------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC--------EEE
Confidence            56677777643       358889988775421     111111111 1112222 33 5777777644        688


Q ss_pred             EEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-Ee
Q 016552          218 KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MD  294 (387)
Q Consensus       218 ~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~  294 (387)
                      +||..+++    ....-.....   .....++.+  ++.+++.++.+..+.+||+.+++-...-.....+.....++ ..
T Consensus       158 iwd~~~~~----~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (402)
T 2aq5_A          158 VWDVGTGA----AVLTLGPDVH---PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS  230 (402)
T ss_dssp             EEETTTTE----EEEEECTTTC---CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS
T ss_pred             EEECCCCC----ccEEEecCCC---CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC
Confidence            99998887    4432210000   011223333  67777777777789999998875432210011111122333 34


Q ss_pred             CCeEEEEe---CCCCeEEEEeCCCCce-eEccccccccCceEE-EEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          295 EEVLYGID---ENSCTLSRYDEVMDDW-KEVVKSDLLKGARHA-AAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~~~ly~~~---~~~~~l~~yd~~~~~W-~~v~~~~~~~~~~~~-~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++++++.+   ..++.+.+||..+..- ..............+ ..-+++ +++.|+..+.|.+||+.+.
T Consensus       231 ~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            67777776   5678899999987532 111111111122222 233445 4456556788999999865

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.56  E-value=0.014  Score=54.51  Aligned_cols=184  Identities=7%  Similarity=-0.014  Sum_probs=99.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..++.|+.+       ..+.+||..+.+-...  +........+...++++++.|+.+.        .+.+||..+..
T Consensus       145 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~  207 (401)
T 4aez_A          145 DGSFLSVGLGN-------GLVDIYDVESQTKLRT--MAGHQARVGCLSWNRHVLSSGSRSG--------AIHHHDVRIAN  207 (401)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEE--ECCCSSCEEEEEEETTEEEEEETTS--------EEEEEETTSSS
T ss_pred             CCCEEEEECCC-------CeEEEEECcCCeEEEE--ecCCCCceEEEEECCCEEEEEcCCC--------CEEEEecccCc
Confidence            45666666643       2588999887754331  1122222233344667777777644        78889987543


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEEE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGI  301 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~  301 (387)
                      ..  -.........      ..++.+  ++.+++.++.+..+.+||..+.+-...-.  .......+++..  ++.+++.
T Consensus       208 ~~--~~~~~~~~~~------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~ll~~  277 (401)
T 4aez_A          208 HQ--IGTLQGHSSE------VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSNLLAT  277 (401)
T ss_dssp             CE--EEEEECCSSC------EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC--CCSSCCCEEEECTTSTTEEEE
T ss_pred             ce--eeEEcCCCCC------eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec--CCcceEEEEEECCCCCCEEEE
Confidence            10  1112111111      222322  67777777777789999998754321111  111112344443  4567777


Q ss_pred             eC--CCCeEEEEeCCCCceeEccccccccCc-eEEEEeCCeEEEE--ecCCCeEEEEeccCC
Q 016552          302 DE--NSCTLSRYDEVMDDWKEVVKSDLLKGA-RHAAAGGGRVCAV--CENGGGIVVVDVKAA  358 (387)
Q Consensus       302 ~~--~~~~l~~yd~~~~~W~~v~~~~~~~~~-~~~~~~~g~i~v~--gg~~~~i~~~d~~~~  358 (387)
                      ++  .++.+..||..+..-.....  ..... ......+++.+++  |...+.+.+||..+.
T Consensus       278 ~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          278 GGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             ECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            64  57899999998765433221  11111 2122235665555  335788999998864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.55  E-value=0.028  Score=50.37  Aligned_cols=185  Identities=7%  Similarity=-0.020  Sum_probs=98.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++..++.|+.+       ..+.+||..+++-..  .+.... ...+.+ .-++++++.|+.+.        .+.+||..+
T Consensus        66 ~~~~l~s~s~d-------~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~sgs~D~--------~v~lWd~~~  128 (304)
T 2ynn_A           66 RKNWIIVGSDD-------FRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWEN  128 (304)
T ss_dssp             GGTEEEEEETT-------SEEEEEETTTCCEEE--EEECCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEGGG
T ss_pred             CCCEEEEECCC-------CEEEEEECCCCcEEE--EEeCCCCcEEEEEEcCCCCEEEEECCCC--------eEEEEECCC
Confidence            45566666633       357888988765322  111111 111222 22556677776654        778888876


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe---CCe
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---EEV  297 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---~~~  297 (387)
                      +.     .....+....   ....++.+   ++.+++.++.+..+.+||..+..=...-. .........+...   ++.
T Consensus       129 ~~-----~~~~~~~~h~---~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  199 (304)
T 2ynn_A          129 NW-----ALEQTFEGHE---HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKP  199 (304)
T ss_dssp             TT-----EEEEEECCCC---SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCC
T ss_pred             Cc-----chhhhhcccC---CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCC
Confidence            62     2211111110   11223333   45667777777889999986543111000 0000011122221   455


Q ss_pred             EEEEeCCCCeEEEEeCCCCceeEccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          298 LYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++.++.++.|..||.++..  .+..+........  ....++.+++.|+....|.+||..+.
T Consensus       200 ~l~s~s~D~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          200 YMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCCeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            66677778899999998764  2223322222222  23345677888778888999998854

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.54  E-value=0.015  Score=54.97  Aligned_cols=206  Identities=9%  Similarity=0.016  Sum_probs=110.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEE-EeCCE-EEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG-CSRGA-VYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +++.+++++...    ....++++|..+++...+...+.  .....+ .-+++ |++.+..+.      ...++++|..+
T Consensus       189 dg~~la~~s~~~----~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~~  256 (415)
T 2hqs_A          189 DGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLAS  256 (415)
T ss_dssp             TSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS------SCEEEEEETTT
T ss_pred             CCCEEEEEEecC----CCcEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC------CceEEEEECCC
Confidence            455555554322    22578999999988776544332  111222 22454 555544322      23689999998


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEE--ECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEE-eCCe
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVG--WKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV  297 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~  297 (387)
                      ++    ...+...+..      .....  -||+ |++.+..+  ..++.+|+.+++-..+...   +.....++. .+|+
T Consensus       257 ~~----~~~l~~~~~~------~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~---~~~~~~~~~spdG~  323 (415)
T 2hqs_A          257 GQ----IRQVTDGRSN------NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQNQDADVSSDGK  323 (415)
T ss_dssp             CC----EEECCCCSSC------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---SSEEEEEEECTTSS
T ss_pred             CC----EEeCcCCCCc------ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC---CCcccCeEECCCCC
Confidence            88    7666533211      22222  2666 44443322  4788889988765444321   111112232 2444


Q ss_pred             -EEEEeCC--CCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecC-C--CeEEEEeccCCCCCCceEEeCCCC
Q 016552          298 -LYGIDEN--SCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-G--GGIVVVDVKAAAAPTIFVVDTPLG  371 (387)
Q Consensus       298 -ly~~~~~--~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~-~--~~i~~~d~~~~~~~~~W~~~~p~~  371 (387)
                       |++....  ...|+.||.++.....+....  ........-+|+.+++++. +  ..++++|+.+.    .-.......
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~----~~~~l~~~~  397 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATD  397 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSS
T ss_pred             EEEEEECcCCceEEEEEECCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC----cEEEeeCCC
Confidence             5444433  247999999998876654432  2223233456776666553 3  27899998855    333322222


Q ss_pred             ceeEEEEEccC
Q 016552          372 FEALSVHIMPR  382 (387)
Q Consensus       372 ~~~~~~~~~~~  382 (387)
                      -+...++.-|.
T Consensus       398 ~~v~~~~~~~~  408 (415)
T 2hqs_A          398 GQVKFPAWSPY  408 (415)
T ss_dssp             SEEEEEEECCC
T ss_pred             CCCcCCccccc
Confidence            25666666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.54  E-value=0.0073  Score=55.77  Aligned_cols=175  Identities=11%  Similarity=0.044  Sum_probs=88.3

Q ss_pred             ccEEEeccCCceeeCCCCC---CCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELV---TPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p---~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      .+.+||..+++-.......   ......+.+ .-+++.++.|+.+.        .+.+||..+.+    -...-..... 
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg--------~v~iwd~~~~~----~~~~~~~h~~-  182 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF--------SVKVWDLSQKA----VLKSYNAHSS-  182 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS-
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEEcCCCC-
Confidence            5788888776533322211   111111222 23667777777654        67889998877    3322111111 


Q ss_pred             ccccceEEEEE--CC-EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCC
Q 016552          241 FSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVM  315 (387)
Q Consensus       241 ~~~~~~~~~~~--~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~  315 (387)
                          ...++.+  ++ .+++.++.+..+.+||+.+.+-..............+++..  ++.+++.+..++.|..||..+
T Consensus       183 ----~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          183 ----EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             ----CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             ----CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence                1222322  33 35666666678999999876543221111111111233332  456777777788999999876


Q ss_pred             CceeEccccccccCceEEEE--eCC-eEEEEecCCCeEEEEeccCC
Q 016552          316 DDWKEVVKSDLLKGARHAAA--GGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~~~~~--~~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+  .+..+.........++  .++ ++++.|+....|.+||..+.
T Consensus       259 ~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          259 PD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             GG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             Cc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            53  2222222222322333  244 56666677788999999865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.53  E-value=0.0043  Score=56.08  Aligned_cols=185  Identities=12%  Similarity=-0.044  Sum_probs=99.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.+|+.....       ..+.+||+.+++....-..+.... ..+..-++ .+|+.+..+        ..+.+||..++
T Consensus         9 ~~~~~v~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~--------~~i~~~d~~~~   72 (331)
T 3u4y_A            9 SNFGIVVEQHL-------RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFC--------QTLVQIETQLE   72 (331)
T ss_dssp             CCEEEEEEGGG-------TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTT--------CEEEEEECSSS
T ss_pred             CCEEEEEecCC-------CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCC--------CeEEEEECCCC
Confidence            35677776532       368999999988765433332111 22222244 577776432        27899999988


Q ss_pred             ccccCe-EEcCCCCCCCccccce-EEEEECCE-EEEEeeeC-C--eEEEEECCCCceeecccccccCCCCcEEEEe-CC-
Q 016552          225 EKNSRW-EKTGELKDGRFSREAI-DAVGWKGK-LCLVNVKG-A--EGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-  296 (387)
Q Consensus       225 ~~~~~W-~~~~~~p~~~~~~~~~-~~~~~~g~-lyv~gg~~-~--~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-  296 (387)
                      +    - .........  .  .. .+..-+|+ +| .+... .  .+.+||+.+++-...-   +.+.....+++. +| 
T Consensus        73 ~----~~~~~~~~~~~--~--~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~spdg~  140 (331)
T 3u4y_A           73 P----PKVVAIQEGQS--S--MADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTI---PIPYDAVGIAISPNGN  140 (331)
T ss_dssp             S----CEEEEEEECSS--C--CCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEE---ECCTTEEEEEECTTSS
T ss_pred             c----eeEEecccCCC--C--ccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEE---ECCCCccceEECCCCC
Confidence            7    4 221111111  0  02 22333555 55 43333 3  8999999988654321   111111233332 34 


Q ss_pred             eEEEEeCCCCe-EEEEeCCCCce-eEcc--ccccccCceEE-EEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          297 VLYGIDENSCT-LSRYDEVMDDW-KEVV--KSDLLKGARHA-AAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~~~~~~~-l~~yd~~~~~W-~~v~--~~~~~~~~~~~-~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      .||+.+...+. +.+||.+.+.- ....  ..+.......+ ..-+|+ +|+.+..++.+.+||+.+.
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            58888766567 88888765321 1111  11111122222 234565 7777667788999999865

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.52  E-value=0.015  Score=54.27  Aligned_cols=105  Identities=10%  Similarity=-0.025  Sum_probs=62.4

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCe-EEEEeCCCCeEEEEeCCCCce--eEccccccc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEV-LYGIDENSCTLSRYDEVMDDW--KEVVKSDLL  327 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~-ly~~~~~~~~l~~yd~~~~~W--~~v~~~~~~  327 (387)
                      ++++.+.++.+..+.+||+.+.+-...-. ........+++.. ++. +++.++.++.|.+||..+..-  ..+... ..
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~  335 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EG  335 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TT
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CC
Confidence            66777777766789999998765321111 0001112233332 344 677777789999999987632  111110 11


Q ss_pred             cCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          328 KGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..-..+...++++++.++....+.+||+...
T Consensus       336 ~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          336 TPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             SCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            1123344557888888888889999998853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.50  E-value=0.0069  Score=55.56  Aligned_cols=189  Identities=15%  Similarity=0.196  Sum_probs=107.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC--CCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV--TPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p--~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      ++.+++.||.++       .+.+||..++.|.....+.  ........+ .-+++.++.|+.+.        .+.+||..
T Consensus        27 ~g~~las~~~D~-------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~   91 (345)
T 3fm0_A           27 AGTLLASCGGDR-------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKN   91 (345)
T ss_dssp             TSSCEEEEETTS-------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEEC
T ss_pred             CCCEEEEEcCCC-------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEcc
Confidence            456666666432       5788898888775422221  111111222 22567777777654        67788888


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCc-eeecccccccCCCCcEEEE-eCCeE
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAM-DEEVL  298 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~-~~~~l  298 (387)
                      ++.    +..+..+.....   ...++.+  ++++.+.++.+..+.++|..+.. +..+............++. .++.+
T Consensus        92 ~~~----~~~~~~~~~h~~---~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           92 QDD----FECVTTLEGHEN---EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             CC-----EEEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             CCC----eEEEEEccCCCC---CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            776    654433321111   1223332  57777777777789999987653 3222210000101122232 24566


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEecc
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      ++.++.++.+..||.+++.|..+..+.........+.  .+|+.++.|+....|.+||..
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            6777778899999999988876655444333332333  367778887777788888863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.50  E-value=0.0098  Score=54.34  Aligned_cols=169  Identities=11%  Similarity=0.030  Sum_probs=92.1

Q ss_pred             ccEEEeccCCceeeCCCCCCCC-cceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELVTPR-RWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .+.+||..+.+-...  +.... ...+.+ .-++++++.|+.+.        .+.+||..+..    -...-.-...   
T Consensus       165 ~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~--------~v~~wd~~~~~----~~~~~~~h~~---  227 (340)
T 1got_B          165 TCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA--------SAKLWDVREGM----CRQTFTGHES---  227 (340)
T ss_dssp             CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCS----EEEEECCCSS---
T ss_pred             cEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC--------cEEEEECCCCe----eEEEEcCCcC---
Confidence            578899888754331  11111 111122 23567788887654        78889988776    3221111111   


Q ss_pred             ccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCcee
Q 016552          243 REAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWK  319 (387)
Q Consensus       243 ~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~  319 (387)
                        ...++.  -++.+++.++.+..+.+||..+++-...-..........+++. .++++++.+..++.+.+||..+..  
T Consensus       228 --~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--  303 (340)
T 1got_B          228 --DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--  303 (340)
T ss_dssp             --CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--
T ss_pred             --CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc--
Confidence              122222  2677777777778899999987643211110000001122333 356777778788899999987653  


Q ss_pred             EccccccccCceEEE--EeCCeEEEEecCCCeEEEEe
Q 016552          320 EVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       320 ~v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d  354 (387)
                      .+..+........++  ..+|+.++.|+....|.+||
T Consensus       304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            333333333332223  33567777777777777775

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.50  E-value=0.011  Score=53.93  Aligned_cols=190  Identities=13%  Similarity=0.083  Sum_probs=99.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+..-...-+............-++++.+.||.+.        .+.+||..+..
T Consensus        66 d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--------~v~iw~~~~~~  130 (340)
T 1got_B           66 DSRLLLSASQD-------GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN--------ICSIYNLKTRE  130 (340)
T ss_dssp             TSSEEEEEETT-------TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC--------EEEEEETTTCS
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC--------eEEEEECccCC
Confidence            35566666643       2578888776653321111111111112223567777777644        77889887754


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCC
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDEN  304 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~  304 (387)
                      ..  ......+...... -.+....-+++ ++.++.+..+.+||+.+++-...-....  ....+++. .++.+++.++.
T Consensus       131 ~~--~~~~~~~~~h~~~-v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sg~~  204 (340)
T 1got_B          131 GN--VRVSRELAGHTGY-LSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             BS--CEEEEEEECCSSC-EEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred             Cc--ceeEEEecCCCcc-EEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCC--CceEEEEECCCCCEEEEEeC
Confidence            11  2221111110000 00112233565 4455555789999998875432211000  01122333 25677777777


Q ss_pred             CCeEEEEeCCCCceeEccccccccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          305 SCTLSRYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.+..||..+..-..  ...........+  ..+++.++.|+....+.+||+.+.
T Consensus       205 d~~v~~wd~~~~~~~~--~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          205 DASAKLWDVREGMCRQ--TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TSCEEEEETTTCSEEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCcEEEEECCCCeeEE--EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence            8999999998764322  222222222222  336788888888888999998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.48  E-value=0.002  Score=59.50  Aligned_cols=182  Identities=8%  Similarity=0.057  Sum_probs=97.6

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEE-EeC-CEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAG-CSR-GAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~-~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      ++..++.|+.++       .+.+||..+++-..  .+..... ....+ ..+ ..+++.|+.+.        .+.+||..
T Consensus       138 dg~~l~sgs~d~-------~i~iwd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~D~--------~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKDI-------CIKVWDLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSEDN--------RILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETTS-------CEEEEETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEETTS--------CEEEEETT
T ss_pred             CCCEEEEEeCCC-------eEEEEECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeecccc--------cccccccc
Confidence            556666666432       57889998875432  2221111 11122 223 35777777654        67899998


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCC--CcEEEEe-CC
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR--GPVAAMD-EE  296 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~--~~~~~~~-~~  296 (387)
                      +.+    -...-.......   ...++..   ++++++.++.+..+.+||..+++-  +.. + .+..  ..++++. ++
T Consensus       201 ~~~----~~~~~~~~~~~~---~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~-~-~~h~~~v~~v~fsp~g  269 (344)
T 4gqb_B          201 CPK----PASQIGCSAPGY---LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLS-S-AVHSQCVTGLVFSPHS  269 (344)
T ss_dssp             SSS----CEEECC----CC---CEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEE-E-ECCSSCEEEEEECSSS
T ss_pred             ccc----eeeeeecceeec---cceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEE-E-cCCCCCEEEEEEccCC
Confidence            877    332211111111   1222322   456777777777899999987642  111 1 1111  2234443 33


Q ss_pred             -eEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--CC-eEEEEecCCCeEEEEeccCC
Q 016552          297 -VLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--GG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 -~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                       ++++.++.++.|.+||.++++-..   ..........++.  +| .+++.++....|.++++.+.
T Consensus       270 ~~~lasgs~D~~i~vwd~~~~~~~~---~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          270 VPFLASLSEDCSLAVLDSSLSELFR---SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             SCCEEEEETTSCEEEECTTCCEEEE---ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CeEEEEEeCCCeEEEEECCCCcEEE---EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence             556666678899999998874322   2222333333332  34 57767777888999988754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.48  E-value=0.017  Score=51.80  Aligned_cols=184  Identities=8%  Similarity=-0.034  Sum_probs=97.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+..-...-..............++++++.|+.+.        .+.+||..+++
T Consensus        24 ~~~~l~s~~~d-------g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--------~i~vwd~~~~~   88 (304)
T 2ynn_A           24 TEPWVLTTLYS-------GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGE   88 (304)
T ss_dssp             SSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS--------EEEEEETTTCC
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCC--------EEEEEECCCCc
Confidence            34556666643       2578888887654321111111111222233566777776644        78899998876


Q ss_pred             cccCeE-EcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCC--CcEEEEe--CCeE
Q 016552          226 KNSRWE-KTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR--GPVAAMD--EEVL  298 (387)
Q Consensus       226 ~~~~W~-~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~--~~~~~~~--~~~l  298 (387)
                          -. .+......      ..++.  -++.+.+.++.+..+.++|..++. .....  ..+..  ..+++..  ++.+
T Consensus        89 ----~~~~~~~h~~~------v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~--~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           89 ----KVVDFEAHPDY------IRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQT--FEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             ----EEEEEECCSSC------EEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEE--ECCCCSCEEEEEECTTCTTE
T ss_pred             ----EEEEEeCCCCc------EEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhh--hcccCCcEEEEEECCCCCCE
Confidence                22 12111111      22222  356666667766789999987652 11111  11111  2233443  4567


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe----CCeEEEEecCCCeEEEEeccCC
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~----~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.++.++.+..||..+..=..... .........+..    ++.+++.|+....|.+||+.+.
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence            7777778999999986542111100 011112222222    5567777777888999998854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.48  E-value=0.0083  Score=61.54  Aligned_cols=188  Identities=9%  Similarity=-0.042  Sum_probs=100.6

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +..+++|+.+       ..+.+||..+++....-...........-.-+++.+++|+.+.        .+.+||..+++ 
T Consensus        25 ~~~la~~~~~-------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~~-   88 (814)
T 3mkq_A           25 EPWVLTTLYS-------GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGE-   88 (814)
T ss_dssp             SSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS--------EEEEEETTTCC-
T ss_pred             CCEEEEEeCC-------CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCc-
Confidence            4555555532       3578899887754432111111111222223566667766543        78999998887 


Q ss_pred             ccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEEEe--CCeEEEEeC
Q 016552          227 NSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMD--EEVLYGIDE  303 (387)
Q Consensus       227 ~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~  303 (387)
                         ....-.-......   ..+..-++...+.++.+..+.+||..++ .....-.  .......+++..  ++.+++.++
T Consensus        89 ---~~~~~~~~~~~v~---~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           89 ---KVVDFEAHPDYIR---SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ---EEEEEECCSSCEE---EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE--CCSSCEEEEEEETTEEEEEEEEE
T ss_pred             ---EEEEEecCCCCEE---EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc--CCCCcEEEEEEEcCCCCEEEEEe
Confidence               5432211111110   1122235666566666678999998776 2222111  111112233443  456777777


Q ss_pred             CCCeEEEEeCCCCceeEccccccccC-ceEEEEe--CCeEEEEecCCCeEEEEeccCC
Q 016552          304 NSCTLSRYDEVMDDWKEVVKSDLLKG-ARHAAAG--GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~v~~~~~~~~-~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.|..||..+..-........... .......  ++..+++|+....+.+||..+.
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            78899999987654322211111111 2222223  7788888888889999998754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.47  E-value=0.032  Score=53.01  Aligned_cols=150  Identities=10%  Similarity=0.064  Sum_probs=82.9

Q ss_pred             EECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       144 ~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ..++..++.|+.+       ..+.+||..+.+-...-..............+++.++.|+.+.        .+.+||..+
T Consensus       277 ~~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--------~i~vwd~~~  341 (464)
T 3v7d_B          277 SGHGNIVVSGSYD-------NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRIWDLEN  341 (464)
T ss_dssp             EEETTEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTT
T ss_pred             cCCCCEEEEEeCC-------CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCC
Confidence            3445566666643       2588999887654321111111111222223556667776544        688999988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE  303 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~  303 (387)
                      .+    -...-.-..     ....++..++...+.++.+..+.+||+.+..-.....  ............++.+.+.++
T Consensus       342 ~~----~~~~~~~h~-----~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          342 GE----LMYTLQGHT-----ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             TE----EEEEECCCS-----SCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE
T ss_pred             Cc----EEEEEeCCC-----CcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec
Confidence            76    322211111     1134555677777777777789999998764221111  111112223344566666665


Q ss_pred             CCCeEEEEeCCCCceeE
Q 016552          304 NSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~  320 (387)
                       ++.+.+||.++++-..
T Consensus       411 -dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          411 -ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             -TTEEEEEETTTCCEEE
T ss_pred             -CCeEEEEECCCCcEEe
Confidence             7899999999886544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.46  E-value=0.0064  Score=56.31  Aligned_cols=185  Identities=8%  Similarity=-0.060  Sum_probs=103.4

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC-CCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      .+++.|+.+       ..+.+||..+.+....-... ........+..  ++++++.|+.+.        .+.+||..+.
T Consensus        87 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKG-------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG--------ATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBT-------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT--------EEEEEETTSC
T ss_pred             CEEEEEcCC-------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC--------EEEEEECCCC
Confidence            355555533       25788898887766543322 12222222332  346777776544        7889999877


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCe-EEEEe
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEV-LYGID  302 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~-ly~~~  302 (387)
                      .    ...+......... -...+..-++++.+.++.+..+.+||+....-..+.. .  .....+++.. ++. +++.+
T Consensus       152 ~----~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-h--~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          152 V----IQVFAKTDSWDYW-YCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL-H--KAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             E----EEEEECCCCSSCC-EEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC-S--SSCEEEEEECSSCTTEEEEE
T ss_pred             c----eEEEeccCCCCCC-eEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc-C--CCcEEEEEECCCCCCEEEEE
Confidence            6    6655432211110 0022223366777777777899999986443333321 0  1112233332 344 77777


Q ss_pred             CCCCeEEEEeCCC----CceeEccccccccCceEEEE--e-CCeEEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVM----DDWKEVVKSDLLKGARHAAA--G-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~----~~W~~v~~~~~~~~~~~~~~--~-~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.++.+..||..+    ......  .. .......+.  - +++.++.++..+.+.+||+.+.
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~--~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAE--MP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEE--EE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             eCCCEEEEEeCCCCCcccceEEE--ec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            7788999999987    322221  11 222222233  3 6788888888889999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.44  E-value=0.0024  Score=58.93  Aligned_cols=190  Identities=12%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..++.|+.+..+...........  -++++++.|+.+.        .+.+||..+
T Consensus        22 ~g~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~--------~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTAT-------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR--------NAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSS-------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS--------SEEEC----
T ss_pred             CCCEEEEecCC-------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC--------eEEEEEcCC
Confidence            45666666532       357899999998888776654333222222  2567777776544        677888776


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCc-eeecccccccCCC--CcEEEEe-CCe
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWR--GPVAAMD-EEV  297 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~--~~~~~~~-~~~  297 (387)
                      ..   .|.....+.....   ...++.+  ++++.+.++.+..+.+||..+++ |..... +.....  ..+++.. +++
T Consensus        87 ~~---~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           87 DG---TWKQTLVLLRLNR---AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH-LKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             -----CCCCEEECCCCSS---CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE-ECSSCCSCEEEEEECTTSS
T ss_pred             CC---ceeeeeEecccCC---ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE-eecccCCCeEEEEEcCCCC
Confidence            54   0322221111111   1222322  56666666666789999998775 543332 111111  2233332 556


Q ss_pred             EEEEeCCCCeEEEEeCCCCceeE----------------ccccccccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          298 LYGIDENSCTLSRYDEVMDDWKE----------------VVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~W~~----------------v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++.++.++.+..||.++.....                +... ........+  ..+++.++.|+....|.+||+.+.
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            77777778899999986443221                1111 112222223  336778888777888999999865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.43  E-value=0.013  Score=52.89  Aligned_cols=220  Identities=8%  Similarity=-0.034  Sum_probs=111.9

Q ss_pred             eEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEE-EECC-EEEEEecccCCCCCCCCccEEEeccCCce-
Q 016552          100 IHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLV-SLSG-KLILLAATTHNFNPALTRPLIFDPICRTW-  176 (387)
Q Consensus       100 ~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~v~GG~~~~~~~~~~~~~vyd~~t~~W-  176 (387)
                      ..+.++|+.+++.......+..                . ..++ .-++ .+|+.+..       ...++++|+.+++. 
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~----------------~-~~~~~s~dg~~l~~~~~~-------~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYD----------------F-VDTAITSDCSNVVVTSDF-------CQTLVQIETQLEPPK   75 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCC----------------E-EEEEECSSSCEEEEEEST-------TCEEEEEECSSSSCE
T ss_pred             CeEEEEeCcccceeeeEEccCC----------------c-ceEEEcCCCCEEEEEeCC-------CCeEEEEECCCCcee
Confidence            3678889988776543323221                0 1122 2244 46666542       13789999998874 


Q ss_pred             e-eCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE
Q 016552          177 T-FGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK  254 (387)
Q Consensus       177 ~-~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~  254 (387)
                      . .+.....+... .+..-++ .+| ++....     ....+.+||..+++    -...-+....  .  ...+..-+|+
T Consensus        76 ~~~~~~~~~~~~~-~~~s~dg~~l~-~~~~~~-----~~~~i~v~d~~~~~----~~~~~~~~~~--~--~~~~~spdg~  140 (331)
T 3u4y_A           76 VVAIQEGQSSMAD-VDITPDDQFAV-TVTGLN-----HPFNMQSYSFLKNK----FISTIPIPYD--A--VGIAISPNGN  140 (331)
T ss_dssp             EEEEEECSSCCCC-EEECTTSSEEE-ECCCSS-----SSCEEEEEETTTTE----EEEEEECCTT--E--EEEEECTTSS
T ss_pred             EEecccCCCCccc-eEECCCCCEEE-EecCCC-----CcccEEEEECCCCC----eEEEEECCCC--c--cceEECCCCC
Confidence            2 22222222211 1222234 566 332211     11378999998887    5443222211  1  1222223564


Q ss_pred             -EEEEeeeCCe-EEEEECCCCce-eec-ccccccCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCce-eEccccccc
Q 016552          255 -LCLVNVKGAE-GAVYDVVANTW-DDM-REGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSRYDEVMDDW-KEVVKSDLL  327 (387)
Q Consensus       255 -lyv~gg~~~~-i~~yD~~~~~W-~~~-~~~~~~~~~~~~~~~~-~~-~ly~~~~~~~~l~~yd~~~~~W-~~v~~~~~~  327 (387)
                       +|+.+..... +.+||...+.- ... ......+.....+++. +| .||+.+...+.+.+||+++.+. ..+...+..
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~  220 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN  220 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC
Confidence             7777665556 88888765321 111 1101111111223332 44 5888877678999999988765 112222222


Q ss_pred             cCc-eEEEEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          328 KGA-RHAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~-~~~~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      ... .....-+|+ +|+.....+.+.++|..+.
T Consensus       221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            222 223344566 6666555677899998865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.40  E-value=0.01  Score=54.47  Aligned_cols=230  Identities=16%  Similarity=0.119  Sum_probs=112.0

Q ss_pred             CCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCE-EEEEecccCCCCCCCCcc--EEEeccC
Q 016552           97 STPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGK-LILLAATTHNFNPALTRP--LIFDPIC  173 (387)
Q Consensus        97 ~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~--~vyd~~t  173 (387)
                      +..+.++.+|+.++++..+.....        .+|.       +-+..-+++ ||+.... .   .....+  |.+|..+
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~--------~~p~-------~l~~spdg~~l~~~~~~-~---~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEV--------ANPS-------YLIPSADGKFVYSVNEF-S---KDQAAVSAFAFDKEK   86 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEEC--------SCCC-------SEEECTTSSEEEEEECC-S---STTCEEEEEEEETTT
T ss_pred             CCCEEEEEEeCCCCCEEEeecccC--------CCCc-------eEEECCCCCEEEEEEcc-C---CCCCcEEEEEEeCCC
Confidence            456677888998887765543311        0011       122223344 6665442 1   012344  4556666


Q ss_pred             CceeeCCCCCCCCc-ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC-------CCCCC-Ccccc
Q 016552          174 RTWTFGPELVTPRR-WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-------ELKDG-RFSRE  244 (387)
Q Consensus       174 ~~W~~l~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~-------~~p~~-~~~~~  244 (387)
                      ++.+.+...+..-. -+..+.-+..||+....+        ..+.+||..++..   ...+.       .-+.+ +....
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~--------~~v~~~~~~~~g~---~~~~~~~~~~~g~~~~~~~~~~~  155 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSG--------GSITVFPIGQDGA---LLPASDVIEFKGSGPDKERQTMP  155 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEECSSEEEEEETTT--------TEEEEEEBCTTSC---BCSCSEEEECCCCCSCTTTCSSC
T ss_pred             CcEEEeeEeccCCCCcEEEEECCCEEEEEECCC--------CEEEEEEeCCCCc---CcccceeEEccCCCCCccccCCC
Confidence            77777655442222 222233333567664322        3678888865431   11111       00100 00000


Q ss_pred             ceEEEE--ECCE-EEEEeeeCCeEEEEECCCCce-------eec---c-cccccCCCCcEEEEe-CC-eEEEEeCCCCeE
Q 016552          245 AIDAVG--WKGK-LCLVNVKGAEGAVYDVVANTW-------DDM---R-EGMVRGWRGPVAAMD-EE-VLYGIDENSCTL  308 (387)
Q Consensus       245 ~~~~~~--~~g~-lyv~gg~~~~i~~yD~~~~~W-------~~~---~-~~~~~~~~~~~~~~~-~~-~ly~~~~~~~~l  308 (387)
                      ....+.  -+|+ +|+.+.....+.+||.....-       ...   . .....+.....+++. +| .||+.+...+.+
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            112233  3665 776654446788887765442       111   0 001111111233332 44 588877667889


Q ss_pred             EEEeCCCCceeEcccccccc----CceEE-EEeCCe-EEEEecC-CCeEEEEecc
Q 016552          309 SRYDEVMDDWKEVVKSDLLK----GARHA-AAGGGR-VCAVCEN-GGGIVVVDVK  356 (387)
Q Consensus       309 ~~yd~~~~~W~~v~~~~~~~----~~~~~-~~~~g~-i~v~gg~-~~~i~~~d~~  356 (387)
                      .+||.++++...+...+...    ....+ ..-+|+ ||+.... .+.+.+||++
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            99999888776655432211    12222 334666 5555555 5778898886

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.39  E-value=0.0059  Score=55.39  Aligned_cols=189  Identities=12%  Similarity=0.055  Sum_probs=103.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.||+.+...       ..+++||+.+++.+.+....... ....+. -++++|+......    .....+.+||+.+.
T Consensus        55 ~g~l~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~-~~~i~~~~dg~l~v~~~~~~----~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           55 QGQLFLLDVFE-------GNIFKINPETKEIKRPFVSHKAN-PAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENGD  122 (333)
T ss_dssp             TSCEEEEETTT-------CEEEEECTTTCCEEEEEECSSSS-EEEEEECTTSCEEEEECTTS----SSCCEEEEECTTSC
T ss_pred             CCCEEEEECCC-------CEEEEEeCCCCcEEEEeeCCCCC-cceEEECCCCcEEEEeCCCC----CCCceEEEEeCCCC
Confidence            56788876521       36899999998877643211111 122222 3678888754321    11246889999888


Q ss_pred             ccccCeEEc-CCCCCCCccccceEEEE--ECCEEEEEeee------CCeEEEEECCCCceeecccccccCCCCcEEEEe-
Q 016552          225 EKNSRWEKT-GELKDGRFSREAIDAVG--WKGKLCLVNVK------GAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-  294 (387)
Q Consensus       225 ~~~~~W~~~-~~~p~~~~~~~~~~~~~--~~g~lyv~gg~------~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-  294 (387)
                      .    -..+ .......    ....+.  -+|++|+....      ...++.||+++++...+.....   ....+++. 
T Consensus       123 ~----~~~~~~~~~~~~----~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~~~~  191 (333)
T 2dg1_A          123 N----LQDIIEDLSTAY----CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALST  191 (333)
T ss_dssp             S----CEEEECSSSSCC----CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECT
T ss_pred             E----EEEEEccCccCC----cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceEECC
Confidence            7    5522 2111111    122223  36788886542      1468889988776655432111   11233332 


Q ss_pred             CC-eEEEEeCCCCeEEEEeCCC--CceeEcc-----ccccccCceEE-EEeCCeEEEEecCCCeEEEEeccC
Q 016552          295 EE-VLYGIDENSCTLSRYDEVM--DDWKEVV-----KSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       295 ~~-~ly~~~~~~~~l~~yd~~~--~~W~~v~-----~~~~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ++ .||+.+...+.|++||.++  .....+.     ..+.......+ ..-+|++++....+..|.+||+..
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence            34 5888875567899999854  2333221     11111112222 233578888766667899998863

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.37  E-value=0.03  Score=49.78  Aligned_cols=200  Identities=10%  Similarity=-0.008  Sum_probs=104.3

Q ss_pred             EEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCCcce-eEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRRWC-AAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      +..+|.+++.+.         ..++.||+ ++  .|+.-.+  .....+ +....++++++......       ..+..+
T Consensus        44 ~~pdG~ilvs~~---------~~V~~~d~-~G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~~-------~~v~~v  104 (276)
T 3no2_A           44 ATKAGEILFSYS---------KGAKMITR-DGRELWNIAAP--AGCEMQTARILPDGNALVAWCGHP-------STILEV  104 (276)
T ss_dssp             ECTTSCEEEECB---------SEEEEECT-TSCEEEEEECC--TTCEEEEEEECTTSCEEEEEESTT-------EEEEEE
T ss_pred             ECCCCCEEEeCC---------CCEEEECC-CCCEEEEEcCC--CCccccccEECCCCCEEEEecCCC-------CEEEEE
Confidence            334677777321         35889999 44  4654321  111122 23334677777654311       256777


Q ss_pred             ECCCCccccCeEEcC--CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEEEeCC
Q 016552          220 DLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMDEE  296 (387)
Q Consensus       220 d~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~~~  296 (387)
                      |+. ++..  |+...  ..+.... .........+|.+++.......+.+||++-+ .|+.-..    .....+....+|
T Consensus       105 d~~-Gk~l--~~~~~~~~~~~~~~-~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~----~~~~~~~~~~~g  176 (276)
T 3no2_A          105 NMK-GEVL--SKTEFETGIERPHA-QFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS----GTPFSSAFLDNG  176 (276)
T ss_dssp             CTT-SCEE--EEEEECCSCSSGGG-SCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS----SCCCEEEECTTS
T ss_pred             eCC-CCEE--EEEeccCCCCcccc-cccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC----CCccceeEcCCC
Confidence            873 3322  44321  1111100 0112234457777766555578999999832 4654322    111223344577


Q ss_pred             eEEEEeCCCCeEEEEeCCCC--ceeEccc-ccc--ccCc-eEEEEeCCeEEEEecC----------CCeEEEEeccCCCC
Q 016552          297 VLYGIDENSCTLSRYDEVMD--DWKEVVK-SDL--LKGA-RHAAAGGGRVCAVCEN----------GGGIVVVDVKAAAA  360 (387)
Q Consensus       297 ~ly~~~~~~~~l~~yd~~~~--~W~~v~~-~~~--~~~~-~~~~~~~g~i~v~gg~----------~~~i~~~d~~~~~~  360 (387)
                      .+++.+...+.|.++|++++  .|+.-.. .+.  +... ......+|.+|+....          ...++.+|.+.+  
T Consensus       177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~--  254 (276)
T 3no2_A          177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK--  254 (276)
T ss_dssp             CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB--
T ss_pred             CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC--
Confidence            88888776778999999965  3654321 221  1112 2233457889988631          234666655533  


Q ss_pred             CCceEEeCCCCc
Q 016552          361 PTIFVVDTPLGF  372 (387)
Q Consensus       361 ~~~W~~~~p~~~  372 (387)
                       -.|+......|
T Consensus       255 -~~W~~~~~~~~  265 (276)
T 3no2_A          255 -VVWQLNDKVKF  265 (276)
T ss_dssp             -EEEEECCTTTS
T ss_pred             -EEEEecCcccc
Confidence             46776555554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.37  E-value=0.0082  Score=53.72  Aligned_cols=226  Identities=8%  Similarity=0.021  Sum_probs=114.1

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEE-EC-CEEEEEecccCCCCCCCCccEEEeccCCceee
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVS-LS-GKLILLAATTHNFNPALTRPLIFDPICRTWTF  178 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~  178 (387)
                      .++.||+.++++..+.. +.....           ......++. .+ +.||+....        ..+++||+. ++...
T Consensus        47 ~i~~~d~~~g~~~~~~~-~~~~~~-----------~~~~~~i~~~~~~g~l~v~~~~--------~~l~~~d~~-g~~~~  105 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICK-PEVNGY-----------GGIPAGCQCDRDANQLFVADMR--------LGLLVVQTD-GTFEE  105 (314)
T ss_dssp             EEEEECTTTCCEEEEEC-CEETTE-----------ECCEEEEEECSSSSEEEEEETT--------TEEEEEETT-SCEEE
T ss_pred             EEEEEeCCCCcEEEEEe-cccCCC-----------CCCCceEEEecCCCcEEEEECC--------CCEEEEeCC-CCEEE
Confidence            57788888877765432 100000           000123333 24 678886541        258999998 77766


Q ss_pred             C-CCCCCC----CcceeEEEeCCEEEEEecCCCC-------CCCCCcceEEEEECCCCccccCeEEcCC-CCCCCccccc
Q 016552          179 G-PELVTP----RRWCAAGCSRGAVYVASGIGSQ-------FSSDVAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREA  245 (387)
Q Consensus       179 l-~~~p~~----r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~  245 (387)
                      + ......    .....+..-++++|+.......       ........+..||+. .+    ...+.. +..+     .
T Consensus       106 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~~~~~~~~~~~-----~  175 (314)
T 1pjx_A          106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ----MIQVDTAFQFP-----N  175 (314)
T ss_dssp             CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----EEEEEEEESSE-----E
T ss_pred             EEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----EEEeccCCCCc-----c
Confidence            5 332211    1122222236789987643210       001112467888876 55    544321 1111     1


Q ss_pred             eEEEE----ECC-EEEEEeeeCCeEEEEECC-CCceeeccc--ccccCC-C-CcEEEE-eCCeEEEEeCCCCeEEEEeCC
Q 016552          246 IDAVG----WKG-KLCLVNVKGAEGAVYDVV-ANTWDDMRE--GMVRGW-R-GPVAAM-DEEVLYGIDENSCTLSRYDEV  314 (387)
Q Consensus       246 ~~~~~----~~g-~lyv~gg~~~~i~~yD~~-~~~W~~~~~--~~~~~~-~-~~~~~~-~~~~ly~~~~~~~~l~~yd~~  314 (387)
                      ..+..    -+| .+|+.......+.+||+. +++......  ..+... . ...+++ .+|.||+.....+.|.+||++
T Consensus       176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            11222    345 577775545689999976 444322110  011110 1 112333 357899887556789999998


Q ss_pred             CCceeEccccccccCceEEE-EeCCe-EEEEecCCCeEEEEeccCC
Q 016552          315 MDDWKEVVKSDLLKGARHAA-AGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~~~~-~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.+-......+. .....++ .-+|+ ||+....++.++.+|+...
T Consensus       256 ~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          256 GGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            543322212221 1222222 23566 7777666788999998854

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.01  Score=55.12  Aligned_cols=143  Identities=11%  Similarity=-0.028  Sum_probs=78.7

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCce
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW  275 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W  275 (387)
                      +..+++|+.+.        .+.+||..+.+.   -..+...... .   ......-++++++.++.+..+.+||..+.+-
T Consensus       217 ~~~~~~~~~~g--------~i~~~d~~~~~~---~~~~~~~~~~-i---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          217 DDKFVIPGPKG--------AIFVYQITEKTP---TGKLIGHHGP-I---SVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             TTEEEEECGGG--------CEEEEETTCSSC---SEEECCCSSC-E---EEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             CCEEEEEcCCC--------eEEEEEcCCCce---eeeeccCCCc-e---EEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            34455655433        688999987761   1112111111 1   0112223666666766667899999887643


Q ss_pred             eecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEE--EEeCCeEEEEecCCCeEEE
Q 016552          276 DDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHA--AAGGGRVCAVCENGGGIVV  352 (387)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~--~~~~g~i~v~gg~~~~i~~  352 (387)
                      ...-.  .......+++.. ++ +++.++.++.+.+||..+.+-..  ...........  ...+++++++++..+.+.+
T Consensus       282 ~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  356 (425)
T 1r5m_A          282 QNCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA--LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV  356 (425)
T ss_dssp             SEEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE--EEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE--ecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence            22111  011112233443 44 56666678899999998764322  22222222222  2335788888887888999


Q ss_pred             EeccCC
Q 016552          353 VDVKAA  358 (387)
Q Consensus       353 ~d~~~~  358 (387)
                      ||+.+.
T Consensus       357 ~~~~~~  362 (425)
T 1r5m_A          357 YDLKKL  362 (425)
T ss_dssp             EECHHH
T ss_pred             EECCCC
Confidence            999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.04  Score=48.78  Aligned_cols=187  Identities=9%  Similarity=-0.039  Sum_probs=93.4

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      .++..++.|+.+       ..+.+||..+..-...-.............-++++++.|+.+.        .+.+||....
T Consensus        27 ~~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~~~~~~~~   91 (313)
T 3odt_A           27 VDDSKVASVSRD-------GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT--------MINGVPLFAT   91 (313)
T ss_dssp             EETTEEEEEETT-------SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTCC
T ss_pred             cCCCEEEEEEcC-------CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC--------eEEEEEeeec
Confidence            455566666643       3578899877654432221111112222233566777776644        5666776544


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-e-CCeEEEEe
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-D-EEVLYGID  302 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~-~~~ly~~~  302 (387)
                      ..   ...+..+....   ....++..++.+.+.++.+..+.+||...........    ......++. . ++.+++.+
T Consensus        92 ~~---~~~~~~~~~~~---~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           92 SG---EDPLYTLIGHQ---GNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAH----NASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TT---SCC-CEECCCS---SCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECC----SSCEEEEEEEETTTTEEEEE
T ss_pred             CC---CCcccchhhcc---cCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccC----CCceeEEEEccCCCCEEEEE
Confidence            20   11111111111   1133444467766777777789999933322221111    111112222 2 55666777


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.++.+..||.....- .+.......-......-+++ ++.|+....+.+||+.+.
T Consensus       162 ~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          162 SADKTIKLWQNDKVIK-TFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             ETTSCEEEEETTEEEE-EECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             ECCCCEEEEecCceEE-EEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            6788999999432211 11110111112223344667 677777888999999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.021  Score=50.67  Aligned_cols=143  Identities=8%  Similarity=-0.031  Sum_probs=76.7

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ++..++.|+.+.        .+.+||.....     ...........   ......-++. ++.++.+..+.+||..+.+
T Consensus       154 ~~~~l~~~~~d~--------~i~i~d~~~~~-----~~~~~~~~~~i---~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~  216 (313)
T 3odt_A          154 SENKFLTASADK--------TIKLWQNDKVI-----KTFSGIHNDVV---RHLAVVDDGH-FISCSNDGLIKLVDMHTGD  216 (313)
T ss_dssp             TTTEEEEEETTS--------CEEEEETTEEE-----EEECSSCSSCE---EEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred             CCCEEEEEECCC--------CEEEEecCceE-----EEEeccCcccE---EEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence            566666666544        67788833222     22221111111   1223345777 5566666789999998764


Q ss_pred             eeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEE
Q 016552          275 WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVV  353 (387)
Q Consensus       275 W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~  353 (387)
                      -...-.  .......+++.. +++ ++.++.++.+..||.++.+-......+...-.......+++ +++++..+.+.+|
T Consensus       217 ~~~~~~--~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw  292 (313)
T 3odt_A          217 VLRTYE--GHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF  292 (313)
T ss_dssp             EEEEEE--CCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred             hhhhhh--cCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence            221111  011112233343 444 45555688999999988764443322211111222334566 5567778889999


Q ss_pred             eccCC
Q 016552          354 DVKAA  358 (387)
Q Consensus       354 d~~~~  358 (387)
                      |+.+.
T Consensus       293 ~~~~~  297 (313)
T 3odt_A          293 SQEKS  297 (313)
T ss_dssp             ESCGG
T ss_pred             eCCCC
Confidence            99975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.35  E-value=0.084  Score=54.22  Aligned_cols=183  Identities=11%  Similarity=0.006  Sum_probs=107.7

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCC----ceeeC-C-CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICR----TWTFG-P-ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~----~W~~l-~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ++.||+.-..       ...++++++...    ....+ . .+..|. ..+.-..+++||+.-..        ...|+++
T Consensus       435 ~~~lY~sD~~-------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~--------~~~I~v~  498 (791)
T 3m0c_C          435 SNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSV--------LGTVSVA  498 (791)
T ss_dssp             TTEEEEEETT-------TTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETT--------TTEEEEE
T ss_pred             CCeeEEeecc-------ceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecC--------CCeEEEE
Confidence            5678887432       245677776542    22222 1 122222 11111236799998432        3478999


Q ss_pred             ECCCCccccCeEEcC--CCCCCCccccceEEEEE---CCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCc-EEE
Q 016552          220 DLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGW---KGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGP-VAA  292 (387)
Q Consensus       220 d~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~---~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~  292 (387)
                      |+....    -..+.  .+..+       ..+++   +|.||+..... ..|+++++....=..+..   .....+ +++
T Consensus       499 ~ldG~~----~~~l~~~~l~~P-------~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---~~l~~P~GLa  564 (791)
T 3m0c_C          499 DTKGVK----RKTLFRENGSKP-------RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---ENIQWPNGIT  564 (791)
T ss_dssp             ETTSSS----EEEEEECTTCCE-------EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---SSCSCEEEEE
T ss_pred             eCCCCe----EEEEEeCCCCCc-------ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---CCCCCceEEE
Confidence            987665    44443  22211       23333   58899986332 679999987654333321   111122 344


Q ss_pred             Ee--CCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          293 MD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.  +++||+.+.....|.++|++...=..+... .....+++++..+++||+.-..+..|..+|..++
T Consensus       565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence            43  789999998778999999987644444322 2345567788889999999778889999986644

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.31  E-value=0.017  Score=52.34  Aligned_cols=176  Identities=11%  Similarity=0.057  Sum_probs=94.9

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEe-C---CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCS-R---GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~  239 (387)
                      ..+.+||..+++..............+.+.. +   +++++.|+.+.        .+.+||..+....  -..+......
T Consensus        44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~--~~~~~~~~~~  113 (357)
T 3i2n_A           44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG--------NLHIWNLEAPEMP--VYSVKGHKEI  113 (357)
T ss_dssp             EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS--------CEEEECTTSCSSC--SEEECCCSSC
T ss_pred             cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC--------eEEEEeCCCCCcc--EEEEEecccc
Confidence            4688899988876543322222222222222 2   46667776544        6788888766411  2222211111


Q ss_pred             CccccceEEE--------EECCEEEEEeeeCCeEEEEECCCCc--eeeccccccc-CCCCcEEEE-----eCCeEEEEeC
Q 016552          240 RFSREAIDAV--------GWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVR-GWRGPVAAM-----DEEVLYGIDE  303 (387)
Q Consensus       240 ~~~~~~~~~~--------~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~-~~~~~~~~~-----~~~~ly~~~~  303 (387)
                            ..++        .-++.+.+.++.+..+.+||+.+..  ...+...... .....+++.     .++.+++.+.
T Consensus       114 ------v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (357)
T 3i2n_A          114 ------INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY  187 (357)
T ss_dssp             ------EEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred             ------eEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence                  1111        1256666666666789999998765  2222211110 101112221     3567777777


Q ss_pred             CCCeEEEEeCCCCceeEccccccccCc-eEEEEe----CCeEEEEecCCCeEEEEeccCC
Q 016552          304 NSCTLSRYDEVMDDWKEVVKSDLLKGA-RHAAAG----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~v~~~~~~~~~-~~~~~~----~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.+..||.++..-.....   .... .++...    ++..+++|+..+.+.+||+.+.
T Consensus       188 ~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          188 DNGDIKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             TTSEEEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             cCCeEEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            78899999998875322211   1222 222222    6778888888888999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.29  E-value=0.038  Score=51.28  Aligned_cols=146  Identities=12%  Similarity=0.090  Sum_probs=83.8

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC--CCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEEC
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~  270 (387)
                      +..++.|+.+.        .+.+||..+++    -...-  ..+....  ....++.+   ++.+++.++.+..+.+||+
T Consensus       170 ~~~l~s~s~D~--------~i~~wd~~~~~----~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~  235 (380)
T 3iz6_a          170 ETRLITGSGDQ--------TCVLWDVTTGQ----RISIFGSEFPSGHT--ADVLSLSINSLNANMFISGSCDTTVRLWDL  235 (380)
T ss_dssp             SSCEEEECTTS--------CEEEECTTTCC----EEEEECCCSSSSCC--SCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred             CCEEEEECCCC--------cEEEEEcCCCc----EEEEeecccCCCCc--cCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence            34455555443        78889998887    43322  1111111  11223333   5677777877788999998


Q ss_pred             CCCc--eeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccc-----c--CceEEEEeCCeE
Q 016552          271 VANT--WDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLL-----K--GARHAAAGGGRV  340 (387)
Q Consensus       271 ~~~~--W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~-----~--~~~~~~~~~g~i  340 (387)
                      ....  -..+..   ......+++. .++..++.++.++.+..||..++.-..+-.....     .  -...+...+|++
T Consensus       236 ~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  312 (380)
T 3iz6_a          236 RITSRAVRTYHG---HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL  312 (380)
T ss_dssp             TTTCCCCEEECC---CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred             CCCCcceEEECC---cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence            6321  111111   0111223343 3567777777889999999988754332221110     1  123344557888


Q ss_pred             EEEecCCCeEEEEeccCC
Q 016552          341 CAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       341 ~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.|+.++.+.+||....
T Consensus       313 l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          313 LFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             EEEECTTSCEEEEETTTC
T ss_pred             EEEEECCCCEEEEECCCC
Confidence            889888889999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.29  E-value=0.019  Score=52.78  Aligned_cols=169  Identities=12%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             ccEEEeccCCceeeCCCCCCCCc-ceeEEE-e--CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRR-WCAAGC-S--RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      .+.+||..+.+-...  +..... ..+... .  ++++++.|+.+.        .+.+||..+.+    ....-..... 
T Consensus       177 ~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg--------~v~~wd~~~~~----~~~~~~~h~~-  241 (354)
T 2pbi_B          177 TCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK--------KAMVWDMRSGQ----CVQAFETHES-  241 (354)
T ss_dssp             EEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS--------CEEEEETTTCC----EEEEECCCSS-
T ss_pred             cEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC--------eEEEEECCCCc----EEEEecCCCC-
Confidence            578889887754321  111111 111111 1  356777777654        78899998887    4432211111 


Q ss_pred             ccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          241 FSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       241 ~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                          ...++.+  ++.+++.++.+..+.+||+.++.-...-..........+++. .++.+++.+..++.+.+||..+..
T Consensus       242 ----~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          242 ----DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             ----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             ----CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence                1223333  567777777778899999987643221110010111122333 356777777778899999987653


Q ss_pred             eeEccccccccCceEE--EEeCCeEEEEecCCCeEEEEe
Q 016552          318 WKEVVKSDLLKGARHA--AAGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       318 W~~v~~~~~~~~~~~~--~~~~g~i~v~gg~~~~i~~~d  354 (387)
                        .+..+.........  ...+|+.++.|+....+.+||
T Consensus       318 --~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          318 --RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             --eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence              22222222333222  234677777777777777764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.038  Score=51.21  Aligned_cols=186  Identities=12%  Similarity=0.011  Sum_probs=94.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.+++.|+.+       ..+.+||.....-..+....  ......+. -+++.++.++.+.        .+.+||..+.
T Consensus       119 ~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~  181 (425)
T 1r5m_A          119 DGNSIVTGVEN-------GELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVEN--------VTILWNVISG  181 (425)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETTC--------CEEEEETTTT
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecCC--------eEEEEECCCC
Confidence            45666666643       25788884444433333211  11112222 2456666665543        6788888877


Q ss_pred             ccccCeEEcCCCCCCCcc------------ccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE
Q 016552          225 EKNSRWEKTGELKDGRFS------------REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~------------~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      +    -...-..+.....            .-......-++. ++.++....+.+||..+++-...-.  .......+++
T Consensus       182 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~i~~~~  254 (425)
T 1r5m_A          182 T----VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLI--GHHGPISVLE  254 (425)
T ss_dssp             E----EEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEEC--CCSSCEEEEE
T ss_pred             c----EEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeec--cCCCceEEEE
Confidence            6    4332222211100            001222233555 4555555689999998764321111  0111112333


Q ss_pred             E-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCc-eEEEEe-CCeEEEEecCCCeEEEEeccCC
Q 016552          293 M-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGA-RHAAAG-GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~-~~~~~~-~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      . .++.+++.++.++.+.+||..+..-...  ....... ..+... ++ .++.++....+.+||+.+.
T Consensus       255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  320 (425)
T 1r5m_A          255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNC--FYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN  320 (425)
T ss_dssp             EETTTTEEEEEETTSCEEEECSSSBSCSEE--ECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCccceE--ecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence            3 2556666776788999999887543221  1112222 223333 45 7777777888999999754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.29  E-value=0.0055  Score=55.96  Aligned_cols=181  Identities=13%  Similarity=0.074  Sum_probs=97.5

Q ss_pred             cEEEeccCCceeeCCCCCC-CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          166 PLIFDPICRTWTFGPELVT-PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      ++.+|+.++++..+..... ......+..-+++||+.+....      ...+.+||..+++    ++.+......... .
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~------~~~v~~~~~~~g~----~~~~~~~~~~~~~-p   88 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD------EGGIAAWQIDGQT----AHKLNTVVAPGTP-P   88 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT------EEEEEEEEEETTE----EEEEEEEEEESCC-C
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC------CceEEEEEecCCc----EEEeeeeecCCCC-C
Confidence            5677888888876432221 1112222233678888764311      2378899998877    7665532111111 1


Q ss_pred             ceEEEEECCE-EEEEeeeCCeEEEEECC-CCceeecccccccCC---------CCcEEEE-eCCeEEEEeCCCCeEEEEe
Q 016552          245 AIDAVGWKGK-LCLVNVKGAEGAVYDVV-ANTWDDMREGMVRGW---------RGPVAAM-DEEVLYGIDENSCTLSRYD  312 (387)
Q Consensus       245 ~~~~~~~~g~-lyv~gg~~~~i~~yD~~-~~~W~~~~~~~~~~~---------~~~~~~~-~~~~ly~~~~~~~~l~~yd  312 (387)
                      ...+..-+|+ ||+.+.....+.+||+. .++...+......+.         ....+++ .+|++|+.+...+.+.+||
T Consensus        89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN  168 (347)
T ss_dssp             SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence            1223344565 66665444678899985 334433322111000         0112333 3567888877678899999


Q ss_pred             CC-CCceeEcccccccc--Cc-eEEEEeCCe-EEEEecCCCeEEEEeccC
Q 016552          313 EV-MDDWKEVVKSDLLK--GA-RHAAAGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       313 ~~-~~~W~~v~~~~~~~--~~-~~~~~~~g~-i~v~gg~~~~i~~~d~~~  357 (387)
                      .+ +++...+.......  .. .....-+|+ +|+.+..+..+.+||...
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            88 55555443221111  12 223344666 777766778888888774

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.28  E-value=0.0078  Score=54.42  Aligned_cols=190  Identities=15%  Similarity=0.193  Sum_probs=103.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEEEe---CCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      ++..++.|+.+       ..+.+||..++....+..+..... ....+..   ++++++.|+.+.        .+.+||.
T Consensus        24 ~g~~lasgs~D-------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~--------~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD-------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR--------KVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT-------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS--------CEEEECC
T ss_pred             CCCEEEEEeCC-------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC--------EEEEEEC
Confidence            45666666643       357888887765433333322221 1222221   256777777654        7889999


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEEEe--
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAMD--  294 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~~--  294 (387)
                      .+..    |..+..+......   ..++.+  +  +.+.+.++.+..+.++|..+. .|..............+++..  
T Consensus        89 ~~~~----~~~~~~~~~h~~~---V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           89 ENGT----WEKSHEHAGHDSS---VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             SSSC----CCEEEEECCCSSC---CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             CCCc----ceEEEEccCCCCc---eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            8887    7654322211111   122222  3  566666666678899998875 574322100000000111110  


Q ss_pred             ----------------CCeEEEEeCCCCeEEEEeCCC-CceeEccccccccCceEEEEe--C----CeEEEEecCCCeEE
Q 016552          295 ----------------EEVLYGIDENSCTLSRYDEVM-DDWKEVVKSDLLKGARHAAAG--G----GRVCAVCENGGGIV  351 (387)
Q Consensus       295 ----------------~~~ly~~~~~~~~l~~yd~~~-~~W~~v~~~~~~~~~~~~~~~--~----g~i~v~gg~~~~i~  351 (387)
                                      .+++++.++.++.|..||.++ ..|..+..+.........+..  +    +++++.|+....|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                            134566666778899999874 467766655444433333333  2    26777777778888


Q ss_pred             EEeccC
Q 016552          352 VVDVKA  357 (387)
Q Consensus       352 ~~d~~~  357 (387)
                      +||+..
T Consensus       242 iw~~~~  247 (316)
T 3bg1_A          242 IWTCDD  247 (316)
T ss_dssp             EEECSS
T ss_pred             EEEccC
Confidence            998764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.27  E-value=0.022  Score=51.31  Aligned_cols=190  Identities=12%  Similarity=-0.005  Sum_probs=103.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.||+.-..       ...++++|+.++. ......+  ..-+..+. -++++||+.....      ...+..||..++
T Consensus        42 ~g~lyv~d~~-------~~~I~~~d~~g~~-~~~~~~~--~~p~gia~~~dG~l~vad~~~~------~~~v~~~d~~~g  105 (306)
T 2p4o_A           42 DGTIFVTNHE-------VGEIVSITPDGNQ-QIHATVE--GKVSGLAFTSNGDLVATGWNAD------SIPVVSLVKSDG  105 (306)
T ss_dssp             TSCEEEEETT-------TTEEEEECTTCCE-EEEEECS--SEEEEEEECTTSCEEEEEECTT------SCEEEEEECTTS
T ss_pred             CCCEEEEeCC-------CCeEEEECCCCce-EEEEeCC--CCceeEEEcCCCcEEEEeccCC------cceEEEEcCCCC
Confidence            5678887431       2468999987653 2211111  11122222 3678998753321      125778898888


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC---ceeeccc----ccccCCCC-cEEEEeCC
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN---TWDDMRE----GMVRGWRG-PVAAMDEE  296 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~---~W~~~~~----~~~~~~~~-~~~~~~~~  296 (387)
                      +    ...+...+..++.  ...+...++.+|+.......++++|+.++   .|..-..    ........ ..+...++
T Consensus       106 ~----~~~~~~~~~~~~~--~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~  179 (306)
T 2p4o_A          106 T----VETLLTLPDAIFL--NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN  179 (306)
T ss_dssp             C----EEEEEECTTCSCE--EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred             e----EEEEEeCCCcccc--CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCC
Confidence            8    7766655443322  11122335677877543468999998764   2311110    00111111 22344566


Q ss_pred             eEEEEeCCCCeEEEEeCCC-CceeEccccccccCc-eEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          297 VLYGIDENSCTLSRYDEVM-DDWKEVVKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       297 ~ly~~~~~~~~l~~yd~~~-~~W~~v~~~~~~~~~-~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      .||+.+...+.|++||.+. .+............+ ..++.-+|+||+....++.|.++|+..
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            8999987778999999875 222111111111112 223344688988877778899998763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.013  Score=53.37  Aligned_cols=189  Identities=13%  Similarity=0.100  Sum_probs=99.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccC--CceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEEC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPIC--RTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDL  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t--~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~  221 (387)
                      ++..++.|+.+       ..+.+||..+  ..++.+..+...........  -++.+++.|+.+.        .+.+||.
T Consensus       118 ~g~~las~s~D-------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRD-------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD--------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETT-------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEeCC-------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC--------eEEEEEC
Confidence            45566666543       2578888743  23433322222221112222  2566777777654        6788888


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCC------ceeecccccccCC--CCc
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVAN------TWDDMREGMVRGW--RGP  289 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~------~W~~~~~~~~~~~--~~~  289 (387)
                      .++.    |..+..+.....   ...++.+  +  +...+.++.+..+.++|..+.      .|..... +....  ...
T Consensus       183 ~~~~----~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~~h~~~v~  254 (330)
T 2hes_X          183 YDDD----WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI-LPDVHKRQVY  254 (330)
T ss_dssp             ETTE----EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE-CCSCCSSCEE
T ss_pred             CCCC----eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee-cccccccceE
Confidence            8777    765543322111   1222222  2  334455555567888876543      3443322 11111  122


Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc-cccC-ceEEEEe----CCeEEEEecCCCeEEEEeccC
Q 016552          290 VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-LLKG-ARHAAAG----GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       290 ~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-~~~~-~~~~~~~----~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++...+.+++.++.++.|.+||..++.|..+.... .... ....+..    ++++++.|+....|.+||+.+
T Consensus       255 ~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            334444445566667889999999988887654321 1221 2222322    567888888888899999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.25  E-value=0.0075  Score=57.23  Aligned_cols=189  Identities=8%  Similarity=-0.052  Sum_probs=101.6

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC-CCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p-~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +.+++.|+.++       .+.+||..++.-..+-.+. ......+.+.  .++.+++.|+.+.        .+.+||..+
T Consensus       132 ~~~lasGs~dg-------~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~~  196 (435)
T 4e54_B          132 PSTVAVGSKGG-------DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFKG  196 (435)
T ss_dssp             TTCEEEEETTS-------CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS--------CEEEEETTS
T ss_pred             CCEEEEEeCCC-------EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeeccC
Confidence            34566666433       5788888776543322221 1112222222  2566777776654        678899988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe--CCeEEEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--EEVLYGI  301 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~  301 (387)
                      +.    -..+......... -......-++++.+.++.+..+.++|.....-..+.. .  .....++++.  ++.+++.
T Consensus       197 ~~----~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~-h--~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          197 NI----LRVFASSDTINIW-FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRM-H--KKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             CE----EEEEECCSSCSCC-CCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBC-C--SSCEEEEEECTTCSSEEEE
T ss_pred             Cc----eeEEeccCCCCcc-EEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEec-c--cceEEeeeecCCCceEEEE
Confidence            76    5544322111110 0122233467777777777789999987653222211 0  0011233332  3456767


Q ss_pred             eCCCCeEEEEeCCCCceeEc-cccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          302 DENSCTLSRYDEVMDDWKEV-VKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 ~~~~~~l~~yd~~~~~W~~v-~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.++.|.+||..+..-... ............+.  .+|+.++.|+..+.|.+||+.+.
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence            77788999999876532211 11111222222222  36777788777888999998743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.24  E-value=0.013  Score=54.06  Aligned_cols=189  Identities=10%  Similarity=0.071  Sum_probs=97.3

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +..++.|+.+       ..+.+||..+..-...-..+.......+..-+++.++.||.+.        .+.+|+...+. 
T Consensus        76 ~~~l~s~s~D-------g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~--------~i~v~~~~~~~-  139 (354)
T 2pbi_B           76 KRRIVSSSQD-------GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN--------KCSVYPLTFDK-  139 (354)
T ss_dssp             SSEEEEEETT-------SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS--------EEEEEECCCCT-
T ss_pred             CCEEEEEeCC-------CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC--------CEEEEEEeccc-
Confidence            4455555533       2577788776654432222222222222233667778887655        67778775543 


Q ss_pred             ccCeEEcCCCCCCC-ccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe---CCeEEE
Q 016552          227 NSRWEKTGELKDGR-FSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD---EEVLYG  300 (387)
Q Consensus       227 ~~~W~~~~~~p~~~-~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~---~~~ly~  300 (387)
                         =.......... .......++.  -++...+.++.+..+.++|+++++-...-.....  ...++.+.   ++.+++
T Consensus       140 ---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          140 ---NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA--DVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             ---TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECCCSSCCEEE
T ss_pred             ---cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC--CeEEEEEEeCCCCCEEE
Confidence               00000000000 0000011222  2454555555567899999988764322110010  11122221   346777


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.++.+..||..+......  ..........+.  .++..++.|+....+.+||+.+.
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQA--FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEeCCCeEEEEECCCCcEEEE--ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            777789999999988764332  222222332333  35778888888888999998754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.20  E-value=0.052  Score=48.15  Aligned_cols=184  Identities=15%  Similarity=0.082  Sum_probs=99.0

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccc
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKN  227 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~  227 (387)
                      .||+++...       ..+++||+.++ .+.+.. +.......+..-++++|+.....        ..+.+||+.+++  
T Consensus        41 ~l~~~~~~~-------~~i~~~~~~~~-~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~--------~~i~~~d~~~g~--  101 (296)
T 3e5z_A           41 AVIFSDVRQ-------NRTWAWSDDGQ-LSPEMH-PSHHQNGHCLNKQGHLIACSHGL--------RRLERQREPGGE--  101 (296)
T ss_dssp             EEEEEEGGG-------TEEEEEETTSC-EEEEES-SCSSEEEEEECTTCCEEEEETTT--------TEEEEECSTTCC--
T ss_pred             EEEEEeCCC-------CEEEEEECCCC-eEEEEC-CCCCcceeeECCCCcEEEEecCC--------CeEEEEcCCCCc--
Confidence            488877532       36899999988 555432 22111112222367888765321        368899998888  


Q ss_pred             cCeEEcCCCCCC-CccccceEEEEECCEEEEEee---e--------------CCeEEEEECCCCceeecccccccCCCCc
Q 016552          228 SRWEKTGELKDG-RFSREAIDAVGWKGKLCLVNV---K--------------GAEGAVYDVVANTWDDMREGMVRGWRGP  289 (387)
Q Consensus       228 ~~W~~~~~~p~~-~~~~~~~~~~~~~g~lyv~gg---~--------------~~~i~~yD~~~~~W~~~~~~~~~~~~~~  289 (387)
                        ...+...... ........++--+|++|+...   .              ...++.||+. ++...+.....   ...
T Consensus       102 --~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---~~~  175 (296)
T 3e5z_A          102 --WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV---KPN  175 (296)
T ss_dssp             --EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS---SEE
T ss_pred             --EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC---CCc
Confidence              7655321111 011111223334788998631   1              1478889887 55444332111   112


Q ss_pred             EEEE-eCCeEEEEeCCCCeEEEEeCC-CCce-e--EccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          290 VAAM-DEEVLYGIDENSCTLSRYDEV-MDDW-K--EVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       290 ~~~~-~~~~ly~~~~~~~~l~~yd~~-~~~W-~--~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+++ .++++++.+...+.|++||.+ +++. .  .+...........+..-+|+||+..  +..|.+||+...
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~  247 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD  247 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC
Confidence            3333 255655666666789999986 4444 1  1111111111122334578888876  677999998743

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.016  Score=53.84  Aligned_cols=189  Identities=10%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCc------ee-eCCCCCCCC-cceeEEEe-C-CEEEEEecCCCCCCCCCcceE
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRT------WT-FGPELVTPR-RWCAAGCS-R-GAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~------W~-~l~~~p~~r-~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      +.+++.|+.+       ..+.+||..+..      -. .+....... .....+.. + +.+++.|+.+.        .+
T Consensus       126 ~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------~v  190 (416)
T 2pm9_A          126 DNVLASGGNN-------GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN--------FA  190 (416)
T ss_dssp             TTBEEEECSS-------SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS--------CE
T ss_pred             CCEEEEEcCC-------CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC--------CE
Confidence            5566666643       257888887765      11 111111111 11122222 3 56777776644        68


Q ss_pred             EEEECCCCccccCeEEcCCCCCCCcc-ccceEEEEE--CC-EEEEEeeeCC---eEEEEECCCCceeecccccc--cCCC
Q 016552          217 EKWDLMNGEKNSRWEKTGELKDGRFS-REAIDAVGW--KG-KLCLVNVKGA---EGAVYDVVANTWDDMREGMV--RGWR  287 (387)
Q Consensus       217 ~~yd~~~~~~~~~W~~~~~~p~~~~~-~~~~~~~~~--~g-~lyv~gg~~~---~i~~yD~~~~~W~~~~~~~~--~~~~  287 (387)
                      .+||..+.+    -...-..+..... .....++.+  ++ .+++.++.+.   .+.+||..+..-. +.. +.  ....
T Consensus       191 ~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~  264 (416)
T 2pm9_A          191 SIWDLKAKK----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQT-LNQGHQKG  264 (416)
T ss_dssp             EEEETTTTE----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBC-CCSCCSSC
T ss_pred             EEEECCCCC----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEE-eecCccCc
Confidence            899998877    4433222210000 011223332  33 4666666555   8999999875311 111 11  1111


Q ss_pred             CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEccccccccC--ceEEEEeCC-eEEEEecCCCeEEEEeccCC
Q 016552          288 GPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG--ARHAAAGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       288 ~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~--~~~~~~~~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..+++..  ++.+++.++.++.|.+||.++.+-  +........  ......-++ ++++.++....+.+||+.+.
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            2233332  567777777788999999987643  222222222  122233345 78888888889999999865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.18  E-value=0.014  Score=59.25  Aligned_cols=183  Identities=11%  Similarity=-0.006  Sum_probs=104.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccC----CceeeCC--CCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPIC----RTWTFGP--ELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVE  217 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t----~~W~~l~--~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~  217 (387)
                      ++.||+.-.       ....++++++.+    ..-..+.  .+..|.   ..++  .+++||++-.        ....|.
T Consensus       417 ~~~Ly~sD~-------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~---glavD~~~g~LY~tD~--------~~~~I~  478 (699)
T 1n7d_A          417 SNRIYWSDL-------SQRMICSTQLDRAHGVSSYDTVISRDIQAPD---GLAVDWIHSNIYWTDS--------VLGTVS  478 (699)
T ss_dssp             TTEEEECCT-------TTTSBEEEESCCCCC-CCCCCBCCSCC--CC---CEECCCSSSBCEECCT--------TTSCEE
T ss_pred             cCeEEEEec-------CCCeEEEEecCCCCCCcceEEEEeCCCCCcc---eEEEEeeCCcEEEEec--------cCCeEE
Confidence            567888632       224688888875    1111111  111121   1222  4678998632        124678


Q ss_pred             EEECCCCccccCeEEcCC--CCCCCccccceEEEE--ECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEEE
Q 016552          218 KWDLMNGEKNSRWEKTGE--LKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       218 ~yd~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~--~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      ++|+....    -..+..  +..++      ..++  .+|.||+..... ..|+++++....-+.+.. ....+ ..+++
T Consensus       479 v~d~dg~~----~~~l~~~~~~~P~------giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~l~~-PnGla  546 (699)
T 1n7d_A          479 VADTKGVK----RKTLFREQGSKPR------AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQW-PNGIT  546 (699)
T ss_dssp             EEBSSSCC----EEEECCCSSCCCC------CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SSCSS-CCCEE
T ss_pred             EEecCCCc----eEEEEeCCCCCcc------eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CCCCC-ccEEE
Confidence            88887665    444322  22121      1222  267888876332 578888876543322211 01111 12344


Q ss_pred             E--eCCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          293 M--DEEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~--~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +  .+++||+.+...+.|.++|+++..-+.+... .....+.+++..++.||++-..+..|..+|..+.
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence            4  3689999998778999999987544444332 2334456667778899999777789999997643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.18  E-value=0.015  Score=52.82  Aligned_cols=187  Identities=9%  Similarity=0.017  Sum_probs=100.5

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC-CCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT-PRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +.+++.|+.+       ..+.+||..+.+-...  +.. .......+..  ++++++.|+.+.        .+.+||..+
T Consensus        85 ~~~l~~~~~d-------g~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSR-------GIIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKDH--------ALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETT-------CEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETTS--------CEEEEETTT
T ss_pred             CCEEEEecCC-------CEEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCCC--------eEEEEEeec
Confidence            4677777643       2688899887653321  111 1111122222  567777777644        788999988


Q ss_pred             CccccCeEEc-CCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeec-cc---------cc--------
Q 016552          224 GEKNSRWEKT-GELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDM-RE---------GM--------  282 (387)
Q Consensus       224 ~~~~~~W~~~-~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~---------~~--------  282 (387)
                      .+    -... ..+.....   ...++.+  ++...+.++.+..+.+||..+.+-... ..         ..        
T Consensus       148 ~~----~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          148 DT----LVAIFGGVEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             TE----EEEEECSTTSCSS---CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             Ce----EEEEecccccccC---ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            76    3322 11111111   1223332  466666777667899999987642110 00         00        


Q ss_pred             ------c--cCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCce------------eEccccccccC--ceEEEEeC--C
Q 016552          283 ------V--RGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDW------------KEVVKSDLLKG--ARHAAAGG--G  338 (387)
Q Consensus       283 ------~--~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W------------~~v~~~~~~~~--~~~~~~~~--g  338 (387)
                            .  ......+++.. +.+++.++.++.+.+||..+..=            ..+........  .......+  +
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ  299 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred             cCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence                  0  11112344455 45666676788999999866421            11111111111  12223445  7


Q ss_pred             eEEEEecCCCeEEEEeccCC
Q 016552          339 RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       339 ~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++++.|+..+.|.+||+.+.
T Consensus       300 ~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          300 KMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             SEEEEECTTSCEEEEECCSS
T ss_pred             cEEEEEecCCcEEEEECCCC
Confidence            88888888889999999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.18  E-value=0.036  Score=49.97  Aligned_cols=152  Identities=11%  Similarity=-0.030  Sum_probs=75.6

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCC-CcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP-RRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~-r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+|+.++..       ..++++|+.+++....-+.+.. .....+..-++ .+|+.+..+        ..+.+||..+
T Consensus        10 ~~~~~v~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~--------~~i~~~d~~t   74 (349)
T 1jmx_B           10 GHEYMIVTNYP-------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY--------GDIYGIDLDT   74 (349)
T ss_dssp             TCEEEEEEETT-------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT--------TEEEEEETTT
T ss_pred             CCEEEEEeCCC-------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC--------CcEEEEeCCC
Confidence            46777776632       4689999998876543222220 11122222344 578776432        3789999988


Q ss_pred             CccccCeEEcCCCCCC---CccccceEEEEECCE-EEEEeee-----------CCeEEEEECCCCceeecccccccCCCC
Q 016552          224 GEKNSRWEKTGELKDG---RFSREAIDAVGWKGK-LCLVNVK-----------GAEGAVYDVVANTWDDMREGMVRGWRG  288 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~---~~~~~~~~~~~~~g~-lyv~gg~-----------~~~i~~yD~~~~~W~~~~~~~~~~~~~  288 (387)
                      ++    -...-..+..   +.......+..-+|+ +|+.+..           ...+.+||+++++-...-.........
T Consensus        75 ~~----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           75 CK----NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             TE----EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             Cc----EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence            87    4432222210   000000112222554 5655532           268999999875322111101111112


Q ss_pred             cEEEE-eCCeEEEEeCCCCeEEEEeCCCCcee
Q 016552          289 PVAAM-DEEVLYGIDENSCTLSRYDEVMDDWK  319 (387)
Q Consensus       289 ~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~  319 (387)
                      .++++ .+|++|+.   ++.+++||.++.+-.
T Consensus       151 ~~~~~s~dg~l~~~---~~~i~~~d~~~~~~~  179 (349)
T 1jmx_B          151 YLMRAADDGSLYVA---GPDIYKMDVKTGKYT  179 (349)
T ss_dssp             CCEEECTTSCEEEE---SSSEEEECTTTCCEE
T ss_pred             cceeECCCCcEEEc---cCcEEEEeCCCCcee
Confidence            22222 35567774   234888888776543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.17  E-value=0.012  Score=54.54  Aligned_cols=146  Identities=8%  Similarity=0.087  Sum_probs=80.6

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ++.+++.|+.+.        .+.+||..+.+    -......+....    ......   ++.+.+.++.+..+.+||+.
T Consensus       111 ~~~~l~s~~~d~--------~i~iwd~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B          111 DTGMFTSSSFDK--------TLKVWDTNTLQ----TADVFNFEETVY----SHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             CTTCEEEEETTS--------EEEEEETTTTE----EEEEEECSSCEE----EEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             CCcEEEEEeCCC--------eEEEeeCCCCc----cceeccCCCcee----eeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            455677766544        78899998877    443333222211    111111   34466677666789999998


Q ss_pred             CCceeecccccccCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCc--eeEcccc------------ccccCceEEEE
Q 016552          272 ANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSRYDEVMDD--WKEVVKS------------DLLKGARHAAA  335 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~-~~-~ly~~~~~~~~l~~yd~~~~~--W~~v~~~------------~~~~~~~~~~~  335 (387)
                      +.+-...-.  .......+++.. ++ .+++.++.++.+..||..+..  ...+...            .........+.
T Consensus       175 ~~~~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          175 SGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             SSCCCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             Ccceeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            764321111  001111233332 33 367777778899999987653  1121100            11112222233


Q ss_pred             --eCCeEEEEecCCCeEEEEeccCC
Q 016552          336 --GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       336 --~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                        .+++.++.++..+.+.+||+.+.
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCC
Confidence              36778888788888999999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.16  E-value=0.053  Score=48.14  Aligned_cols=190  Identities=9%  Similarity=-0.037  Sum_probs=97.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC----CCcceeEEEeCCEEEEE----ecCCCC-----CCCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT----PRRWCAAGCSRGAVYVA----SGIGSQ-----FSSDV  212 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~----~r~~~~~~~~~~~iyv~----GG~~~~-----~~~~~  212 (387)
                      ++.+|+....       ...+.+||+.+++.+.+.....    .+....+..-+|++|+.    |.....     .....
T Consensus        79 dg~l~v~~~~-------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~  151 (296)
T 3e5z_A           79 QGHLIACSHG-------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP  151 (296)
T ss_dssp             TCCEEEEETT-------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred             CCcEEEEecC-------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence            5677766431       1368999998888776532211    11122233346789987    331100     00011


Q ss_pred             cceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECC-CCce-eeccc-ccccCCCCc
Q 016552          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV-ANTW-DDMRE-GMVRGWRGP  289 (387)
Q Consensus       213 ~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~-~~~W-~~~~~-~~~~~~~~~  289 (387)
                      ...++.||+. ++    ...+..-. . ..  ...+..-+|++++.+.....+.+||+. +++. ..... ....+.. .
T Consensus       152 ~~~l~~~~~~-g~----~~~~~~~~-~-~~--~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p-~  221 (296)
T 3e5z_A          152 GRWVFRLAPD-GT----LSAPIRDR-V-KP--NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT-D  221 (296)
T ss_dssp             SCEEEEECTT-SC----EEEEECCC-S-SE--EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC-C
T ss_pred             CcEEEEECCC-CC----EEEeecCC-C-CC--ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC-C
Confidence            2367888887 55    44433111 0 10  111222367776444444789999986 4554 21111 0111111 1


Q ss_pred             EEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE-EeCC-eEEEEecCCCeEEEEeccCC
Q 016552          290 VAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       290 ~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+++ .+|.||+..  .+.|.+||++...-..+.....  ....+. .-++ .||+.+.  ..++.+++.+.
T Consensus       222 ~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~  287 (296)
T 3e5z_A          222 GLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT--TSNLCFGGPEGRTLYMTVS--TEFWSIETNVR  287 (296)
T ss_dssp             SEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC--CCEEEEESTTSCEEEEEET--TEEEEEECSCC
T ss_pred             eEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC--ceeEEEECCCCCEEEEEcC--CeEEEEEcccc
Confidence            2333 467888876  6789999998665444433222  122222 2233 4666533  47888888754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.15  E-value=0.18  Score=49.73  Aligned_cols=205  Identities=11%  Similarity=0.076  Sum_probs=114.8

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEec-cCC--ceeeCCCCCCC--------CcceeEEEeCCEEEEEecCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDP-ICR--TWTFGPELVTP--------RRWCAAGCSRGAVYVASGIGSQFS  209 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~-~t~--~W~~l~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~  209 (387)
                      ..++.++.||+....       ...++.+|+ .|.  .|+.-......        ......++.+++||+...      
T Consensus        57 ~P~v~~g~vyv~~~~-------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------  123 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF-------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------  123 (571)
T ss_dssp             CCEEETTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------
T ss_pred             ccEEECCEEEEEeCC-------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------
Confidence            345678999987542       136899999 776  58874332211        111234567889998632      


Q ss_pred             CCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeee-----CCeEEEEECCCC--ceeeccccc
Q 016552          210 SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVAN--TWDDMREGM  282 (387)
Q Consensus       210 ~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~~--~W~~~~~~~  282 (387)
                         -..+.++|..+++..  |+.-..-+...... ...-++.++++|+....     ...+.+||.+++  .|+.-....
T Consensus       124 ---dg~l~alD~~tG~~~--W~~~~~~~~~~~~~-~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~  197 (571)
T 2ad6_A          124 ---NGHLLALDAKTGKIN--WEVEVCDPKVGSTL-TQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS  197 (571)
T ss_dssp             ---TSEEEEEETTTCCEE--EEEECCCGGGTCBC-CSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             ---CCEEEEEECCCCCEE--EEecCCCCCcccee-ccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCC
Confidence               136789999988765  88543211000110 12234569999886542     357999999877  486432111


Q ss_pred             c-----------------------cCC-------------CCcEEEEeCCeEEEEeCC---------------CCeEEEE
Q 016552          283 V-----------------------RGW-------------RGPVAAMDEEVLYGIDEN---------------SCTLSRY  311 (387)
Q Consensus       283 ~-----------------------~~~-------------~~~~~~~~~~~ly~~~~~---------------~~~l~~y  311 (387)
                      .                       ..|             ...+.-...+.+|+-.++               .+.|+++
T Consensus       198 ~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Al  277 (571)
T 2ad6_A          198 DDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGR  277 (571)
T ss_dssp             HHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEE
T ss_pred             ccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEE
Confidence            0                       000             011111234678876532               1359999


Q ss_pred             eCCCC--ceeEccccc---c--ccCceEEEE--eCCe---EEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          312 DEVMD--DWKEVVKSD---L--LKGARHAAA--GGGR---VCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       312 d~~~~--~W~~v~~~~---~--~~~~~~~~~--~~g~---i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      |++++  .|+.-....   .  ......++.  .+|+   +++++..+..++++|..+.  ...|..
T Consensus       278 d~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~~w~~  342 (571)
T 2ad6_A          278 DLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG--NLIVAE  342 (571)
T ss_dssp             ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC--CEEEEE
T ss_pred             ecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC--CEEeee
Confidence            99876  476432211   0  111222232  4674   6677677778999998754  235765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.15  E-value=0.039  Score=49.65  Aligned_cols=186  Identities=9%  Similarity=-0.058  Sum_probs=98.0

Q ss_pred             CCE-EEEEecccCCCCCCCCccEEEec-cCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGK-LILLAATTHNFNPALTRPLIFDP-ICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~-l~v~GG~~~~~~~~~~~~~vyd~-~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++. .++.|+.+       ..+.+||. .++.-..+...+........+...+.+++.|+.+.        .+.+||..+
T Consensus        67 ~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~--------~i~iwd~~~  131 (342)
T 1yfq_A           67 NTDLQIYVGTVQ-------GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG--------LIEVIDPRN  131 (342)
T ss_dssp             SSSEEEEEEETT-------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS--------EEEEECHHH
T ss_pred             CCCcEEEEEcCC-------CeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCC--------eEEEEcccc
Confidence            566 66666643       36899999 88877665441111222222222255666666543        678888765


Q ss_pred             ---------CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCC-Cc--eeecccccccCCCCcEE
Q 016552          224 ---------GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVA-NT--WDDMREGMVRGWRGPVA  291 (387)
Q Consensus       224 ---------~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~-~~--W~~~~~~~~~~~~~~~~  291 (387)
                               .+    -  +..+...   ..........+. ++.+..+..+.+||..+ ..  ......  .......++
T Consensus       132 ~~~~~~~~~~~----~--~~~~~~~---~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i~~i  199 (342)
T 1yfq_A          132 YGDGVIAVKNL----N--SNNTKVK---NKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRDV  199 (342)
T ss_dssp             HTTBCEEEEES----C--SSSSSSC---CCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEEE
T ss_pred             cccccccccCC----e--eeEEeeC---CceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeec--CCCCceeEE
Confidence                     33    1  1111111   111223333444 45555557899999987 43  222211  111112334


Q ss_pred             EEe--CCeEEEEeCCCCeEEEEeCCCC--c--eeEccccccc---------cCceEEEE--eCCeEEEEecCCCeEEEEe
Q 016552          292 AMD--EEVLYGIDENSCTLSRYDEVMD--D--WKEVVKSDLL---------KGARHAAA--GGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       292 ~~~--~~~ly~~~~~~~~l~~yd~~~~--~--W~~v~~~~~~---------~~~~~~~~--~~g~i~v~gg~~~~i~~~d  354 (387)
                      +..  ++.+++.+..++.+.+||.+..  .  ...+......         ......+.  .++++++.|+..+.+.+||
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            443  4677777777888888887654  1  1111111111         11222333  3677778877788899999


Q ss_pred             ccCC
Q 016552          355 VKAA  358 (387)
Q Consensus       355 ~~~~  358 (387)
                      +.+.
T Consensus       280 ~~~~  283 (342)
T 1yfq_A          280 LQTR  283 (342)
T ss_dssp             TTTT
T ss_pred             CccH
Confidence            9855

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.14  E-value=0.09  Score=47.65  Aligned_cols=182  Identities=12%  Similarity=0.012  Sum_probs=94.5

Q ss_pred             ccEEEeccCCceeeCCC-CCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCC-----C
Q 016552          165 RPLIFDPICRTWTFGPE-LVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELK-----D  238 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p-----~  238 (387)
                      .++++|+.+++...... -........+..-+++|||.....        ..+.+||+......  -..+....     .
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~--------~~v~~~~~~g~~~~--~~~~~~~~~~g~~~  139 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVAL--------HQVFKLDPHSKEGP--LLILGRSMQPGSDQ  139 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTT--------TEEEEECTTCSSCC--SEEESBTTBCCCST
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCC--------CEEEEEeCCCCeEE--EEEecccCCCCCCc
Confidence            58999998877543211 011111112222367899986432        37888998655100  22222110     0


Q ss_pred             CCccccceEEEEE---CCEEEEEee-eCCeEEEEECCCCceeecccc-c-----ccCCC-CcEEEEe--CCeEEEEeCCC
Q 016552          239 GRFSREAIDAVGW---KGKLCLVNV-KGAEGAVYDVVANTWDDMREG-M-----VRGWR-GPVAAMD--EEVLYGIDENS  305 (387)
Q Consensus       239 ~~~~~~~~~~~~~---~g~lyv~gg-~~~~i~~yD~~~~~W~~~~~~-~-----~~~~~-~~~~~~~--~~~ly~~~~~~  305 (387)
                      ....  ....+++   +|.+|+... ....+.+||+....-..+... .     +.... ...+++.  ++.||+.+...
T Consensus       140 ~~~~--~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          140 NHFC--QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN  217 (329)
T ss_dssp             TCCS--SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred             cccC--CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence            1111  1223333   688999986 457899999655433333210 0     00111 1234443  38999999888


Q ss_pred             CeEEEEeCCCCceeEcccccc-ccCceEEEEeCCeEEEEec-------CCCeEEEEeccCC
Q 016552          306 CTLSRYDEVMDDWKEVVKSDL-LKGARHAAAGGGRVCAVCE-------NGGGIVVVDVKAA  358 (387)
Q Consensus       306 ~~l~~yd~~~~~W~~v~~~~~-~~~~~~~~~~~g~i~v~gg-------~~~~i~~~d~~~~  358 (387)
                      +.|.+||+++++....-..+. ......+....+.++...|       .+..+.++|..+.
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence            899999999666554322221 1112222222344444433       3457888887644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.14  E-value=0.095  Score=48.22  Aligned_cols=202  Identities=8%  Similarity=0.001  Sum_probs=101.1

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCCc----eeeCCCCCCCC-cceeE-EEeC----C---EEEEEecCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRT----WTFGPELVTPR-RWCAA-GCSR----G---AVYVASGIGSQ  207 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~----W~~l~~~p~~r-~~~~~-~~~~----~---~iyv~GG~~~~  207 (387)
                      .++.....+++.|+.+       ..+.+||..+..    +..+..+.... ..... ..-+    +   ++++.|+.+. 
T Consensus        20 ~~~~~~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg-   91 (397)
T 1sq9_A           20 FSVSACNSFTVSCSGD-------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG-   91 (397)
T ss_dssp             EEEEECSSEEEEEETT-------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS-
T ss_pred             EEEEecCCeEEEEcCC-------CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC-
Confidence            3444455666666643       367888888776    22111111111 11122 2234    6   7777777644 


Q ss_pred             CCCCCcceEEEEECCCCcccc--CeEEcCCCCCCCccccceEEEE-----ECCEE-EEEeeeCCeEEEEECCC------C
Q 016552          208 FSSDVAKSVEKWDLMNGEKNS--RWEKTGELKDGRFSREAIDAVG-----WKGKL-CLVNVKGAEGAVYDVVA------N  273 (387)
Q Consensus       208 ~~~~~~~~v~~yd~~~~~~~~--~W~~~~~~p~~~~~~~~~~~~~-----~~g~l-yv~gg~~~~i~~yD~~~------~  273 (387)
                             .+.+||..+.....  .+..+...+.............     -++.. ++.++.+..+.+||..+      .
T Consensus        92 -------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           92 -------DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             -------CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             -------CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence                   67888877766100  0233332210000001122233     35666 66776667899999877      3


Q ss_pred             c---eeecccc-------cccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccc---cCceEEEE--e
Q 016552          274 T---WDDMREG-------MVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLL---KGARHAAA--G  336 (387)
Q Consensus       274 ~---W~~~~~~-------~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~---~~~~~~~~--~  336 (387)
                      +   |......       ........+++.. ++ +++.+..++.+..||..+..-...-.. ...   ......+.  .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            2   2111010       0011122344443 45 666777788999999987643332221 001   22222333  3


Q ss_pred             CCeEEEEecCC---CeEEEEeccCC
Q 016552          337 GGRVCAVCENG---GGIVVVDVKAA  358 (387)
Q Consensus       337 ~g~i~v~gg~~---~~i~~~d~~~~  358 (387)
                      +++++++++..   ..|.+||+.+.
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTC
T ss_pred             CCCEEEEEecCCCCceEEEEECCCC
Confidence            67777777766   78999998854

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.14  E-value=0.079  Score=49.94  Aligned_cols=195  Identities=13%  Similarity=0.024  Sum_probs=107.0

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      .++.||+....       ...+.++|+.++.-..+.... .....+....++.||+......       ..+.++|+..+
T Consensus       140 ~~g~lyv~d~~-------~~~I~~id~~~g~~~~~~~~~-~~~~ia~~~~g~~l~~~d~~~~-------~~I~~~d~~~~  204 (409)
T 3hrp_A          140 GNNTVLAYQRD-------DPRVRLISVDDNKVTTVHPGF-KGGKPAVTKDKQRVYSIGWEGT-------HTVYVYMKASG  204 (409)
T ss_dssp             STTEEEEEETT-------TTEEEEEETTTTEEEEEEETC-CBCBCEECTTSSEEEEEBSSTT-------CEEEEEEGGGT
T ss_pred             CCCCEEEEecC-------CCcEEEEECCCCEEEEeeccC-CCCceeEecCCCcEEEEecCCC-------ceEEEEEcCCC
Confidence            46788888642       246899999988766543321 1111222222346777643221       27888888765


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCceeeccc---ccccCCC-CcEEEEe--CCe
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTWDDMRE---GMVRGWR-GPVAAMD--EEV  297 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~~---~~~~~~~-~~~~~~~--~~~  297 (387)
                      .   ....+...+..........++.- +|.||+... ...+..||+.+..-..+..   ....++. ...+++.  ++.
T Consensus       205 ~---~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          205 W---APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             T---CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             c---eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence            3   02233111110011111222222 688999543 3579999999876554421   0111111 1155554  589


Q ss_pred             EEEEeCCCCeEEEEeCCCCceeEcccc------------ccccCceEEEE-eCCeEEEEec-CCCeEEEEeccCC
Q 016552          298 LYGIDENSCTLSRYDEVMDDWKEVVKS------------DLLKGARHAAA-GGGRVCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~W~~v~~~------------~~~~~~~~~~~-~~g~i~v~gg-~~~~i~~~d~~~~  358 (387)
                      ||+.+...+.|++||++...-......            .....+..++. -+|.||+.-. .+..|..+|+.+.
T Consensus       281 lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             EEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            999988788999999876522222211            00122333333 3678999977 7889999995433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.13  E-value=0.12  Score=52.07  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=116.0

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCC--------CcceeEEEeCCEEEEEecCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGCSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      ..++.++.||+....        ..++.+|..|.  .|+.-...+..        ......++.+++||+...       
T Consensus        72 ~P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------  136 (677)
T 1kb0_A           72 TPVVVDGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------  136 (677)
T ss_dssp             CCEEETTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred             CCEEECCEEEEECCC--------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------
Confidence            345678999988652        35899999887  58874432210        112234567889988632       


Q ss_pred             CCcceEEEEECCCCccccCeEEcCC-CCCCCccccceEEEEECCEEEEEeee-----CCeEEEEECCCCc--eeeccccc
Q 016552          211 DVAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVANT--WDDMREGM  282 (387)
Q Consensus       211 ~~~~~v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~~~--W~~~~~~~  282 (387)
                        -..+.++|..+++..  |+.-.. -+..... ....-++.++++|+....     ...+.+||.++++  |+.-....
T Consensus       137 --dg~l~alD~~tG~~~--W~~~~~~~~~~~~~-~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~  211 (677)
T 1kb0_A          137 --DGRLIALDAATGKEV--WHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG  211 (677)
T ss_dssp             --TSEEEEEETTTCCEE--EEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             --CCEEEEEECCCCCEE--eeecCCcCcCcCcc-cccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC
Confidence              136889999988866  886432 1110011 112345668999886542     2579999998874  86532111


Q ss_pred             cc--------------CCC----------C----cEEEE--eCCeEEEEeCCC------------------CeEEEEeCC
Q 016552          283 VR--------------GWR----------G----PVAAM--DEEVLYGIDENS------------------CTLSRYDEV  314 (387)
Q Consensus       283 ~~--------------~~~----------~----~~~~~--~~~~ly~~~~~~------------------~~l~~yd~~  314 (387)
                      ..              .|.          +    ...++  .++.||+-.++.                  +.|+++|.+
T Consensus       212 ~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~  291 (677)
T 1kb0_A          212 DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD  291 (677)
T ss_dssp             CTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             CccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC
Confidence            10              010          0    12222  366777654321                  259999998


Q ss_pred             CC--ceeEcccccc-----ccCceEEE--EeCC---eEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          315 MD--DWKEVVKSDL-----LKGARHAA--AGGG---RVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       315 ~~--~W~~v~~~~~-----~~~~~~~~--~~~g---~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      ++  .|..-.....     ......++  ..+|   ++++++..++.++++|..++  ...|.+
T Consensus       292 TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG--~~l~~~  353 (677)
T 1kb0_A          292 TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG--KFISAK  353 (677)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC--CEEEEE
T ss_pred             CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC--CEeccc
Confidence            87  4764221110     11122222  2366   67777777788999998864  134654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.11  E-value=0.12  Score=45.13  Aligned_cols=154  Identities=10%  Similarity=0.023  Sum_probs=86.9

Q ss_pred             eEEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCCCcce
Q 016552          140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKS  215 (387)
Q Consensus       140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  215 (387)
                      ..++..  ++.||+.-..       ...+.++|+....-+.+.+....+.. ..++.  +++||+.....      ....
T Consensus        82 ~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P~-~i~vd~~~g~lyv~~~~~------~~~~  147 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQ-------LDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNR------DNPK  147 (267)
T ss_dssp             EEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCS------SSCE
T ss_pred             cEEEEEecCCeEEEEECC-------CCEEEEEEcCCCCEEEEEECCCCCcc-EEEEeeCCCEEEEEECCC------CCcE
Confidence            344443  5789987542       24688888875543333211111111 22232  67999985321      1246


Q ss_pred             EEEEECCCCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE
Q 016552          216 VEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       216 v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      +.++++....    -..+...... .    .....+   ++.||+.....+.+.+||+....-..+....   ..-..++
T Consensus       148 I~~~~~dg~~----~~~~~~~~~~-~----P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~  215 (267)
T 1npe_A          148 IETSHMDGTN----RRILAQDNLG-L----PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVT  215 (267)
T ss_dssp             EEEEETTSCC----CEEEECTTCS-C----EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEE
T ss_pred             EEEEecCCCC----cEEEEECCCC-C----CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEE
Confidence            7788876544    3333211111 1    222233   4689998776678999999864322221111   1112456


Q ss_pred             EeCCeEEEEeCCCCeEEEEeCCCCcee
Q 016552          293 MDEEVLYGIDENSCTLSRYDEVMDDWK  319 (387)
Q Consensus       293 ~~~~~ly~~~~~~~~l~~yd~~~~~W~  319 (387)
                      +.++.||+.+..++.|.++|+++.+-.
T Consensus       216 ~d~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          216 SYGKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             EETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EeCCEEEEEECCCCeEEEEeCCCCCce
Confidence            678899999877789999999877544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.11  E-value=0.13  Score=45.67  Aligned_cols=196  Identities=9%  Similarity=0.012  Sum_probs=98.7

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCC-------ceeeCCCCCCCCcceeEEEe--C--CEEEEEecCCCCCCCCCcce
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICR-------TWTFGPELVTPRRWCAAGCS--R--GAVYVASGIGSQFSSDVAKS  215 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~-------~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~  215 (387)
                      +.+++.|+.++       .+.+||..+.       .|+.+..+............  +  +.+++.|+.+.        .
T Consensus        71 ~~~l~s~~~dg-------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--------~  135 (351)
T 3f3f_A           71 GRIIASASYDK-------TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG--------I  135 (351)
T ss_dssp             CSEEEEEETTS-------CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC--------E
T ss_pred             CCEEEEEcCCC-------eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC--------c
Confidence            56777776432       5788888764       23333222222221122222  3  66667766544        7


Q ss_pred             EEEEECCCCccccCeEEcC-----CCCCCCccccceEEEEE-----CCEEEEEeeeCCeEEEEECCCCceeecccccccC
Q 016552          216 VEKWDLMNGEKNSRWEKTG-----ELKDGRFSREAIDAVGW-----KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRG  285 (387)
Q Consensus       216 v~~yd~~~~~~~~~W~~~~-----~~p~~~~~~~~~~~~~~-----~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~  285 (387)
                      +.+||..+.+....|....     ........ ....++..     ++.+++.++....+..++...+....+.......
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  214 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHL-QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK  214 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC
T ss_pred             EEEecCCChHHhccccccccccccccccCCcc-cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC
Confidence            7889887665222233111     01100000 00112222     2566666666656666666666654333211111


Q ss_pred             CCCcEEEEe-CC----eEEEEeCCCCeEEEEeCCCCc-------------------------------------------
Q 016552          286 WRGPVAAMD-EE----VLYGIDENSCTLSRYDEVMDD-------------------------------------------  317 (387)
Q Consensus       286 ~~~~~~~~~-~~----~ly~~~~~~~~l~~yd~~~~~-------------------------------------------  317 (387)
                      ....+++.. ++    .+++.++.++.|.+||..+..                                           
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL  294 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred             cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence            112233333 33    677777778899999987631                                           


Q ss_pred             -eeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          318 -WKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 -W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                       ...+............+.  .++++++.|+..+.|.+||+.+.
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence             112221221222332333  36778888788888999999864

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.11  E-value=0.14  Score=51.92  Aligned_cols=198  Identities=16%  Similarity=0.175  Sum_probs=110.9

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCC--------CcceeEEEeCCEEEEEecCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGCSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      ..++.++.||+....        ..++.+|..|.  .|+.-...+..        ......++.+++||+... +     
T Consensus        65 ~P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-d-----  130 (689)
T 1yiq_A           65 TPIVVDGVMYTTGPF--------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-D-----  130 (689)
T ss_dssp             CCEEETTEEEEECGG--------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-T-----
T ss_pred             cCEEECCEEEEEcCC--------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-C-----
Confidence            345678999987642        35889999876  58874433211        011234567889988642 1     


Q ss_pred             CCcceEEEEECCCCccccCeEEcCC-CCCCCccccceEEEEECCEEEEEeee-----CCeEEEEECCCCc--eeeccc-c
Q 016552          211 DVAKSVEKWDLMNGEKNSRWEKTGE-LKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVANT--WDDMRE-G  281 (387)
Q Consensus       211 ~~~~~v~~yd~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~~~--W~~~~~-~  281 (387)
                         ..+.++|..|++..  |+.-.. -+..... ....-++.+|++|+-.+.     ...+.+||.++++  |+.-.. .
T Consensus       131 ---g~l~AlDa~TG~~~--W~~~~~~~~~~~~~-~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~  204 (689)
T 1yiq_A          131 ---GRLEAIDAKTGQRA--WSVDTRADHKRSYT-ITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG  204 (689)
T ss_dssp             ---SEEEEEETTTCCEE--EEEECCSCTTSCCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             ---CEEEEEECCCCCEe--eeecCcCCCCCCcc-ccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence               36789999988866  886542 1111111 112345679999875432     2579999999885  874311 0


Q ss_pred             ccc-------------CCC-------------CcEEEE--eCCeEEEEeCCC------------------CeEEEEeCCC
Q 016552          282 MVR-------------GWR-------------GPVAAM--DEEVLYGIDENS------------------CTLSRYDEVM  315 (387)
Q Consensus       282 ~~~-------------~~~-------------~~~~~~--~~~~ly~~~~~~------------------~~l~~yd~~~  315 (387)
                      -+.             .+.             -...++  .++.||+-.++.                  +.|+++|.++
T Consensus       205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T  284 (689)
T 1yiq_A          205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT  284 (689)
T ss_dssp             CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred             CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence            000             000             012333  356666653321                  1499999998


Q ss_pred             C--ceeEcccccc-----ccCceEEE--EeCCe---EEEEecCCCeEEEEeccCC
Q 016552          316 D--DWKEVVKSDL-----LKGARHAA--AGGGR---VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       316 ~--~W~~v~~~~~-----~~~~~~~~--~~~g~---i~v~gg~~~~i~~~d~~~~  358 (387)
                      +  .|..-.....     ......+.  ..+|+   +++++..++.++++|..++
T Consensus       285 G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          285 GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence            7  4764322111     11112121  23565   6667667788999998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.10  E-value=0.11  Score=51.59  Aligned_cols=205  Identities=12%  Similarity=0.091  Sum_probs=115.1

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEec-cCC--ceeeCCCCCCC--------CcceeEEE--eCCE----EEEEec
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDP-ICR--TWTFGPELVTP--------RRWCAAGC--SRGA----VYVASG  203 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~-~t~--~W~~l~~~p~~--------r~~~~~~~--~~~~----iyv~GG  203 (387)
                      ..++.++.||+....       ...++.+|. .|.  .|+.-...+..        ......++  .+++    ||+...
T Consensus        57 tP~v~~g~vyv~~~~-------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF-------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             CCEEETTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             ccEEECCEEEEEeCC-------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            345678999997642       135899999 776  58875433211        01112344  5667    887532


Q ss_pred             CCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee-----eCCeEEEEECCCCc--ee
Q 016552          204 IGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV-----KGAEGAVYDVVANT--WD  276 (387)
Q Consensus       204 ~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg-----~~~~i~~yD~~~~~--W~  276 (387)
                       +        ..+.++|..+++..  |+.-..-+...... ...-++.+|++|+-..     ....+..||.++++  |+
T Consensus       130 -d--------g~l~AlDa~TG~~~--W~~~~~~~~~~~~~-~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          130 -D--------GNVAALNAETGETV--WKVENSDIKVGSTL-TIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             -T--------SEEEEEETTTCCEE--EEEECCCGGGTCBC-CSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             -C--------CEEEEEECCCCCEE--EeecCCCCCcccee-ecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence             1        26788999988866  88543211100110 1223457999887543     13589999999874  86


Q ss_pred             ecccccc------------------------------------cCCCCcEEEEeCCeEEEEeCC---------------C
Q 016552          277 DMREGMV------------------------------------RGWRGPVAAMDEEVLYGIDEN---------------S  305 (387)
Q Consensus       277 ~~~~~~~------------------------------------~~~~~~~~~~~~~~ly~~~~~---------------~  305 (387)
                      .-.....                                    ..|...+....++.+|+-.++               .
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~  277 (599)
T 1w6s_A          198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (599)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence            4322110                                    011122333356777776543               2


Q ss_pred             CeEEEEeCCCC--ceeEcccccc-----ccCceEEEE---eCC---eEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          306 CTLSRYDEVMD--DWKEVVKSDL-----LKGARHAAA---GGG---RVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       306 ~~l~~yd~~~~--~W~~v~~~~~-----~~~~~~~~~---~~g---~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      +.|+++|++++  .|..-.....     ......++.   .+|   ++++.+..+..++++|..+.  ...|..
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~lw~~  349 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG--ALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC--CEEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC--CEeecc
Confidence            47999999887  4654222111     111223333   356   56776667788999998754  235654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.10  E-value=0.022  Score=51.64  Aligned_cols=187  Identities=10%  Similarity=0.001  Sum_probs=98.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCc--eeeCCCCCC--CCcceeEE-----EeCCEEEEEecCCCCCCCCCcceE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRT--WTFGPELVT--PRRWCAAG-----CSRGAVYVASGIGSQFSSDVAKSV  216 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~--W~~l~~~p~--~r~~~~~~-----~~~~~iyv~GG~~~~~~~~~~~~v  216 (387)
                      ++..++.|+.+       ..+.+||..+..  ...+.....  .+.....+     ..++++++.|+.+.        .+
T Consensus       128 ~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~--------~i  192 (357)
T 3i2n_A          128 GAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG--------DI  192 (357)
T ss_dssp             CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS--------EE
T ss_pred             CccEEEEEeCC-------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC--------eE
Confidence            45566666533       257889988764  333333222  11222222     13567777766543        78


Q ss_pred             EEEECCCCccccCeEEcCCCCCCCccccceEEEEE-----CCEEEEEeeeCCeEEEEECCCCcee-eccccc--ccCCCC
Q 016552          217 EKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-----KGKLCLVNVKGAEGAVYDVVANTWD-DMREGM--VRGWRG  288 (387)
Q Consensus       217 ~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-----~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~--~~~~~~  288 (387)
                      .+||..+.+    -.........      ..++.+     ++..++.++.+..+.+||..+..-. .+....  ......
T Consensus       193 ~i~d~~~~~----~~~~~~~~~~------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v  262 (357)
T 3i2n_A          193 KLFDLRNMA----LRWETNIKNG------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV  262 (357)
T ss_dssp             EEEETTTTE----EEEEEECSSC------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred             EEEECccCc----eeeecCCCCc------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence            899998887    3322222111      222322     5666667766678899988764211 000000  111112


Q ss_pred             cEEEEe-CCe-EEEEeCCCCeEEEEeCCCCc-----------------eeEccccccccCceEEE--EeCCeEEE-EecC
Q 016552          289 PVAAMD-EEV-LYGIDENSCTLSRYDEVMDD-----------------WKEVVKSDLLKGARHAA--AGGGRVCA-VCEN  346 (387)
Q Consensus       289 ~~~~~~-~~~-ly~~~~~~~~l~~yd~~~~~-----------------W~~v~~~~~~~~~~~~~--~~~g~i~v-~gg~  346 (387)
                      .+++.. ++. +++.++.++.+.+||.++..                 +..+............+  ..+++.++ .|+.
T Consensus       263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence            233333 345 66777778899999987542                 22333332223332223  23566555 5777


Q ss_pred             CCeEEEEeccC
Q 016552          347 GGGIVVVDVKA  357 (387)
Q Consensus       347 ~~~i~~~d~~~  357 (387)
                      ...+.+||+.+
T Consensus       343 d~~i~iw~~~~  353 (357)
T 3i2n_A          343 DQTVRVLIVTK  353 (357)
T ss_dssp             TSEEEEEEECC
T ss_pred             CCcEEEEECCC
Confidence            88899999884

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.086  Score=49.98  Aligned_cols=153  Identities=11%  Similarity=-0.048  Sum_probs=77.7

Q ss_pred             CCE-EEEEecccCCCCCCCCccEEEecc--CCceee-CCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          146 SGK-LILLAATTHNFNPALTRPLIFDPI--CRTWTF-GPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~-l~v~GG~~~~~~~~~~~~~vyd~~--t~~W~~-l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      ++. |++.|+.++       .+.+||..  +..-.. +.....+....+.+ .-+++.++.|+.+.        .+.++|
T Consensus       113 d~~~l~~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g--------~v~~~~  177 (450)
T 2vdu_B          113 DESRLIACADSDK-------SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG--------DVYSID  177 (450)
T ss_dssp             TSSEEEEEEGGGT-------EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS--------EEEEEE
T ss_pred             CCCEEEEEECCCC-------eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC--------cEEEEe
Confidence            344 456776432       57888887  443322 11101111111222 22556666665433        678888


Q ss_pred             CCCCccccCeEE--cCCCCCCCccccceEEEEEC---CEEEEEeeeCCeEEEEECCCCceeec-ccccccCCCCcEEEEe
Q 016552          221 LMNGEKNSRWEK--TGELKDGRFSREAIDAVGWK---GKLCLVNVKGAEGAVYDVVANTWDDM-REGMVRGWRGPVAAMD  294 (387)
Q Consensus       221 ~~~~~~~~~W~~--~~~~p~~~~~~~~~~~~~~~---g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~~~~~~~~~~~~~  294 (387)
                      ..+..    -..  ...+... ...-......-+   +++++.++.+..+.+||+.+.+-... .....  ....++++.
T Consensus       178 ~~~~~----~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~s  250 (450)
T 2vdu_B          178 INSIP----EEKFTQEPILGH-VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--HFVSSICCG  250 (450)
T ss_dssp             TTSCC----CSSCCCCCSEEC-SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--SCEEEEEEC
T ss_pred             cCCcc----cccccceeeecc-cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--CceEEEEEC
Confidence            76665    221  0011100 000012233346   77777777778899999887653321 11011  111233333


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~W~~  320 (387)
                      ++.+++.++.++.|.+||..+.+-..
T Consensus       251 d~~~l~s~~~d~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          251 KDYLLLSAGGDDKIFAWDWKTGKNLS  276 (450)
T ss_dssp             STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEee
Confidence            66677777778899999998876443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.09  E-value=0.091  Score=48.87  Aligned_cols=187  Identities=16%  Similarity=0.089  Sum_probs=97.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC-CCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT-PRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +++.++.|+.+       ..+.+||..+.+-...  +.. .....+.+. -+++.++.|+.+.        .+.+||..+
T Consensus       134 dg~~l~s~~~d-------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d~--------~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAED-------RLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGDR--------TVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTT
T ss_pred             CCCEEEEEcCC-------CeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCCC--------cEEEEECCC
Confidence            46677776643       3578999988754332  111 111122222 2455666666544        788999988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeec-ccc--cccCCCC--cEEEE-eC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDM-REG--MVRGWRG--PVAAM-DE  295 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~--~~~~~~~--~~~~~-~~  295 (387)
                      ++    -...-......     ...+..  ++++++.++.+..+.+||..++.-... ...  ...+...  .++++ .+
T Consensus       197 ~~----~~~~~~~~~~v-----~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          197 GQ----CSLTLSIEDGV-----TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             TE----EEEEEECSSCE-----EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             Ce----eEEEEEcCCCc-----EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            87    44322221110     112222  677777777778899999988753221 110  0011111  22333 25


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccc----------cccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVK----------SDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~----------~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++++.++.++.|..||..+..-.....          .........  ....+++.++.|+....+.+||..+.
T Consensus       268 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            6666777778899999987642211100          001111111  22235677777777888999998854

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.16  Score=48.15  Aligned_cols=177  Identities=7%  Similarity=-0.137  Sum_probs=90.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceee--CCCCCCCC--cceeEEEeC---CEEEEEecCCCCCCCCCcceEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF--GPELVTPR--RWCAAGCSR---GAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~--l~~~p~~r--~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      ++..++.|+.+       ..++++|..+.....  ...+....  .......-+   +++++.|+.+.        .+.+
T Consensus       160 ~~~~l~~~~~~-------g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~--------~i~v  224 (450)
T 2vdu_B          160 DDTTVIIADKF-------GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE--------HIKI  224 (450)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS--------CEEE
T ss_pred             CCCEEEEEeCC-------CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC--------cEEE
Confidence            45556666532       256888876654332  11111111  112222335   77778777644        7888


Q ss_pred             EECCCCccccCeEEc-C-CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccccc--------------
Q 016552          219 WDLMNGEKNSRWEKT-G-ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGM--------------  282 (387)
Q Consensus       219 yd~~~~~~~~~W~~~-~-~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--------------  282 (387)
                      ||..+..    -... . ... ...   .+.+.. ++++++.++.+..+.+||..+++-...-...              
T Consensus       225 wd~~~~~----~~~~~~~~h~-~~v---~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (450)
T 2vdu_B          225 SHYPQCF----IVDKWLFGHK-HFV---SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP  295 (450)
T ss_dssp             EEESCTT----CEEEECCCCS-SCE---EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred             EECCCCc----eeeeeecCCC-Cce---EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence            9988776    3322 1 111 100   022223 7877777777789999999887642211100              


Q ss_pred             ---------ccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeC--CC-CceeEccccccccCceEEEEeCCeEEEEecC
Q 016552          283 ---------VRGWRGPVAAMD--EEVLYGIDENSCTLSRYDE--VM-DDWKEVVKSDLLKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       283 ---------~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~--~~-~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~  346 (387)
                               ........++..  +..|++.....+.|.+||.  .+ +.+..+...+.......+....+.+++..+.
T Consensus       296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             ---------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred             ccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence                     000111122222  3344444436788999998  33 4555555444332234444455677776543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.06  E-value=0.095  Score=46.70  Aligned_cols=186  Identities=12%  Similarity=0.074  Sum_probs=101.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.||++...       ...+++||+.++.-.... .+ .+....+..-++++|+..+          +.+.+||+.+++
T Consensus        24 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~-~~-~~~~~i~~~~dG~l~v~~~----------~~l~~~d~~~g~   84 (297)
T 3g4e_A           24 SNSLLFVDIP-------AKKVCRWDSFTKQVQRVT-MD-APVSSVALRQSGGYVATIG----------TKFCALNWKEQS   84 (297)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTTCCEEEEE-CS-SCEEEEEEBTTSSEEEEET----------TEEEEEETTTTE
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCcEEEEe-CC-CceEEEEECCCCCEEEEEC----------CeEEEEECCCCc
Confidence            4678887542       246899999988654432 11 1111222223567777531          267899999988


Q ss_pred             cccCeEEcCCCCCCC-ccccceEEEEECCEEEEEeeeC-----------CeEEEEECCCCceeecccccccCCCCcEEEE
Q 016552          226 KNSRWEKTGELKDGR-FSREAIDAVGWKGKLCLVNVKG-----------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~-~~~~~~~~~~~~g~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                          +..+...+... ..+.....+--+|++|+.....           ..++.+|+.. +...+......   ...+++
T Consensus        85 ----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~---pngi~~  156 (297)
T 3g4e_A           85 ----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI---SNGLDW  156 (297)
T ss_dssp             ----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB---EEEEEE
T ss_pred             ----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc---ccceEE
Confidence                87765433211 1111112222368888854221           3577787753 33332221111   123343


Q ss_pred             e--CCeEEEEeCCCCeEEEEeC--CCCceeE---ccccccc-cCceEEE-EeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 D--EEVLYGIDENSCTLSRYDE--VMDDWKE---VVKSDLL-KGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~--~~~ly~~~~~~~~l~~yd~--~~~~W~~---v~~~~~~-~~~~~~~-~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .  ++.||+.+...+.|++||.  ++.....   +...+.. .....++ --+|.||+....+..|.+||+.+.
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            2  4468998876788999986  4554321   1111111 1122233 346889998777788999999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.05  E-value=0.032  Score=50.96  Aligned_cols=150  Identities=9%  Similarity=0.071  Sum_probs=86.7

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++.+.||.+.        .+.+||..++.    |.....+.....  ....++.  -+|++.+.++.+..+.++|..+
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~~----~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGDS----WICKSVLSEGHQ--RTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETTE----EEEEEEECSSCS--SCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCCc----ceeeeeeccccC--CcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            566777777654        67889988887    764322211111  1122333  2677777777777889999888


Q ss_pred             CceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCC-ceeEccccccccCceEEE--EeCCeEEEEecCCC
Q 016552          273 NTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMD-DWKEVVKSDLLKGARHAA--AGGGRVCAVCENGG  348 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~-~W~~v~~~~~~~~~~~~~--~~~g~i~v~gg~~~  348 (387)
                      +.+..+...........+++.. ++++++.++.++.+.+||..+. .+..+..+.........+  .-++++++.|+...
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  172 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD  172 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence            7665443211111111233332 5667777777889999998764 333333333222222222  33577788877778


Q ss_pred             eEEEEeccCC
Q 016552          349 GIVVVDVKAA  358 (387)
Q Consensus       349 ~i~~~d~~~~  358 (387)
                      .+.+||..+.
T Consensus       173 ~i~~w~~~~~  182 (345)
T 3fm0_A          173 TVKLYREEED  182 (345)
T ss_dssp             CEEEEEEETT
T ss_pred             cEEEEEecCC
Confidence            8999988765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.05  E-value=0.046  Score=49.09  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCc
Q 016552          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      .+++.|+.+.        .+.+||..+.+    -...-.-...     ...++.  -++++.+.++.+..+.+||..+..
T Consensus       186 ~~~~s~~~d~--------~i~i~d~~~~~----~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          186 PIIVSCGWDK--------LVKVWNLANCK----LKTNHIGHTG-----YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             CEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cEEEEEcCCC--------EEEEEECCCCc----eeeEecCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            4556665543        67889988876    4332211111     122232  367777777777789999988764


Q ss_pred             eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc-------cccCceEE--EEeCCeEEEEec
Q 016552          275 WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-------LLKGARHA--AAGGGRVCAVCE  345 (387)
Q Consensus       275 W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-------~~~~~~~~--~~~~g~i~v~gg  345 (387)
                      -...-   ........++...+..++.++.++.|.+||.++..-......+       ........  ...+|+.++.|+
T Consensus       249 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          249 HLYTL---DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EEEEE---ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred             eeeee---cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence            32111   1111122333433334455556788999999876433221111       11112222  234678888888


Q ss_pred             CCCeEEEEeccCC
Q 016552          346 NGGGIVVVDVKAA  358 (387)
Q Consensus       346 ~~~~i~~~d~~~~  358 (387)
                      ..+.|.+||++++
T Consensus       326 ~Dg~v~iW~~~tG  338 (340)
T 4aow_A          326 TDNLVRVWQVTIG  338 (340)
T ss_dssp             TTSCEEEEEEEC-
T ss_pred             CCCEEEEEeCCCc
Confidence            8888999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.05  E-value=0.03  Score=51.71  Aligned_cols=193  Identities=13%  Similarity=0.053  Sum_probs=99.0

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCc------eeeCCCCCCC---CcceeEE-E----eCCEE-EEEecCCCCCCCCC
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRT------WTFGPELVTP---RRWCAAG-C----SRGAV-YVASGIGSQFSSDV  212 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~------W~~l~~~p~~---r~~~~~~-~----~~~~i-yv~GG~~~~~~~~~  212 (387)
                      .+++.|+.+       ..+.+||..++.      +..+...+..   ......+ .    -+++. ++.|+.+.      
T Consensus        82 ~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------  148 (397)
T 1sq9_A           82 CLVATTSFS-------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------  148 (397)
T ss_dssp             EEEEEEETT-------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------
T ss_pred             cEEEEEcCC-------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------
Confidence            677776643       358889988876      6666544311   2222222 2    34566 77766543      


Q ss_pred             cceEEEEECCC------CccccCeEEcCCCC------CCCccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCceeecc
Q 016552          213 AKSVEKWDLMN------GEKNSRWEKTGELK------DGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMR  279 (387)
Q Consensus       213 ~~~v~~yd~~~------~~~~~~W~~~~~~p------~~~~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~  279 (387)
                        .+.+||..+      .... .|.....+.      ... ......... -++ +++.++.+..+.+||..+.+-...-
T Consensus       149 --~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  223 (397)
T 1sq9_A          149 --TTYIWKFHPFADESNSLTL-NWSPTLELQGTVESPMTP-SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF  223 (397)
T ss_dssp             --CEEEEEEESSSSHHHHTTT-CCCCEEEEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             --cEEEEeCCcccccccccee-eccCcceeeeeeccccCC-CCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence              677888876      3310 011100110      000 000012222 256 5566666678999999876532221


Q ss_pred             ccc-cc---CCCCcEEEEe-CCeEEEEeCCC---CeEEEEeCCCCceeEcccccc-----------ccCceEEEE--eCC
Q 016552          280 EGM-VR---GWRGPVAAMD-EEVLYGIDENS---CTLSRYDEVMDDWKEVVKSDL-----------LKGARHAAA--GGG  338 (387)
Q Consensus       280 ~~~-~~---~~~~~~~~~~-~~~ly~~~~~~---~~l~~yd~~~~~W~~v~~~~~-----------~~~~~~~~~--~~g  338 (387)
                      ... ..   .....+++.. ++.+++.++.+   +.|.+||..+.+-...-..+.           .......+.  .++
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence            100 00   1112233332 45666666666   789999998764322111100           222322333  357


Q ss_pred             eEEEEecCCCeEEEEeccCC
Q 016552          339 RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       339 ~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.++.|+..+.+.+||+.+.
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTT
T ss_pred             CEEEEEeCCCeEEEEEcCCC
Confidence            88888888889999999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.05  E-value=0.095  Score=49.16  Aligned_cols=176  Identities=10%  Similarity=0.077  Sum_probs=96.1

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .++++|..|++-.++-.+........++  .-+++.++.|+.+.        .+.+||..+++    -.....-...   
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg--------~v~iWd~~~~~----~~~~~~~h~~---  190 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA--------EVQLWDVQQQK----RLRNMTSHSA---  190 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS---
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC--------eEEEEEcCCCc----EEEEEeCCCC---
Confidence            6899999998776654443322222222  23667777777654        78999998887    3322211111   


Q ss_pred             ccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCc--ee
Q 016552          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDD--WK  319 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~--W~  319 (387)
                        ...+...++.+.+.++.+..+..+|................ ...... ..++..++.++.++.+.+||..+..  +.
T Consensus       191 --~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~-~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~  267 (420)
T 4gga_A          191 --RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV  267 (420)
T ss_dssp             --CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred             --ceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc-ceeeeeecCCCCeeeeeeccccceEEeeccccccce
Confidence              13455667887777777778889988765432211000000 011111 2245666666677889999987653  22


Q ss_pred             EccccccccCceEEEE---eCCeEEEEecC--CCeEEEEeccCC
Q 016552          320 EVVKSDLLKGARHAAA---GGGRVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       320 ~v~~~~~~~~~~~~~~---~~g~i~v~gg~--~~~i~~~d~~~~  358 (387)
                      .+..............   .++.++.++++  ...|.+||+.+.
T Consensus       268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            2222222222222222   24556655443  467889998865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.04  E-value=0.11  Score=47.67  Aligned_cols=170  Identities=13%  Similarity=-0.000  Sum_probs=98.8

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCC--CCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE--LKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~--~p~~~  240 (387)
                      .+.++++.......+.+-  .....+.+.  .+++||+.--.        ...+..+++....    -..+..  +..+.
T Consensus        54 ~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~----~~~~~~~~~~~p~  119 (349)
T 3v64_C           54 DIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSN----VEEVVSTGLESPG  119 (349)
T ss_dssp             CEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS----CEEEECSSCSCCC
T ss_pred             ceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEecc--------CCceEEEecCCCC----ceEEEeCCCCCcc
Confidence            467777777666553221  111122222  35789987422        2478889988766    554422  21111


Q ss_pred             ccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEEe--CCeEEEEeCCC-CeEEEEeCCC
Q 016552          241 FSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMD--EEVLYGIDENS-CTLSRYDEVM  315 (387)
Q Consensus       241 ~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~--~~~ly~~~~~~-~~l~~yd~~~  315 (387)
                           ..++- .++.||+.......|.++|+....-..+..   ..... ..+++.  ++.||+.+... +.|+++|++.
T Consensus       120 -----glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          120 -----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             -----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             -----EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence                 22222 378999987666789999987654333221   11112 234444  78999998665 7899999987


Q ss_pred             CceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccC
Q 016552          316 DDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ..=+.+.. .....+.+++.  .+++||+.-.....|..+|++.
T Consensus       192 ~~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          192 SGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             CSCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            64444322 12222333333  4688988866677888888774

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.015  Score=59.62  Aligned_cols=149  Identities=8%  Similarity=0.044  Sum_probs=89.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEEC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~  270 (387)
                      +++.++.||.+.        .+.+||...++    +..+..+.....   ...++.+  +  +.+.+.++.+..+.+||.
T Consensus        20 dg~~latg~~dg--------~I~vwd~~~~~----~~~~~~l~~h~~---~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSDK--------TIKIFEVEGET----HKLIDTLTGHEG---PVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETTT--------EEEEEEEETTE----EEEEEEECCCSS---CEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCC--------cEEEEecCCCC----CccceeccCCcC---ceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            455666666544        78889988777    766554432211   1333333  3  667777777778999999


Q ss_pred             CCCceeecccccccCCCCcEEEEe-C--CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe-----------
Q 016552          271 VANTWDDMREGMVRGWRGPVAAMD-E--EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG-----------  336 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~-~--~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~-----------  336 (387)
                      .++.|..+...........+++.. +  +.+++.++.++.+.+||..+..-...............+..           
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~  164 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence            999876665422222122333333 2  56777777789999999987632222211122222222222           


Q ss_pred             ----CCeEEEEecCCCeEEEEeccCC
Q 016552          337 ----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       337 ----~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                          ++..++.|+..+.|.+||+.+.
T Consensus       165 ~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          165 NGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             --CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ccCCCCCEEEEEECCCeEEEEeccCC
Confidence                3678888888888999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.02  E-value=0.011  Score=63.84  Aligned_cols=185  Identities=11%  Similarity=0.023  Sum_probs=103.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..+++|+.+       ..+.+||..+.+......-........+..-+++..+.|+.+.        .+.+||..+++
T Consensus       972 ~g~~l~~g~~~-------g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg--------~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          972 HLEYVAFGDED-------GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS--------VIQVWNWQTGD 1036 (1249)
T ss_dssp             TSSEEEEEETT-------SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS--------BEEEEETTTTE
T ss_pred             CCCEEEEEcCC-------CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCCc
Confidence            44556666532       3578899887654432111111112222233566677776544        78899999888


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCC
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDEN  304 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~  304 (387)
                          ...........     .......+..++.++.+..+.+||..+++-...-.... + ...+++ ..++++++.++.
T Consensus      1037 ----~~~~~~~~~~v-----~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~-~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A         1037 ----YVFLQAHQETV-----KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQ-G-TVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp             ----EECCBCCSSCE-----EEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCS-S-CCCCEEECSSSSSCEEECC
T ss_pred             ----eEEEecCCCcE-----EEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccC-C-cEEEEEECCCCCEEEEEcC
Confidence                65443222111     22233333334555556789999998875322111011 1 112222 235666777777


Q ss_pred             CCeEEEEeCCCCceeEccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          305 SCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.+..||..+..  .+..+........  ....+|++++.|+..+.|.+||+.+.
T Consensus      1106 d~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1106 DKTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             SSCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred             CCcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            8899999987654  2222222223322  23447888888888888999999864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.01  E-value=0.19  Score=45.60  Aligned_cols=180  Identities=12%  Similarity=-0.008  Sum_probs=107.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCc---eeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRT---WTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~---W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      ++.||+.--       ....++++++.+..   +.....+..+.   ..++  .+++||+.-..        ...++++|
T Consensus        46 ~~~lyw~D~-------~~~~I~r~~~~g~~~~~~~~~~~l~~p~---glavd~~~g~ly~~d~~--------~~~I~~~~  107 (318)
T 3sov_A           46 HGLIYWSDV-------SEEAIKRTEFNKTESVQNVVVSGLLSPD---GLACDWLGEKLYWTDSE--------TNRIEVSN  107 (318)
T ss_dssp             GTEEEEEET-------TTTEEEEEETTSSSCCCEEEEECCSCCC---EEEEETTTTEEEEEETT--------TTEEEEEE
T ss_pred             CCEEEEEEC-------CCCcEEEEEccCCCceEEEEcCCCCCcc---EEEEEcCCCeEEEEECC--------CCEEEEEE
Confidence            578888743       22467888887652   11111111111   2232  47899997432        24788898


Q ss_pred             CCCCccccCeEEcC--CCCCCCccccceEEEEE---CCEEEEEee-eCCeEEEEECCCCceeecccccccCCCC-cEEEE
Q 016552          221 LMNGEKNSRWEKTG--ELKDGRFSREAIDAVGW---KGKLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAM  293 (387)
Q Consensus       221 ~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~---~g~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~  293 (387)
                      +....    -..+.  .+..+       ...++   +|.||+... ....|+++|+....=+.+..   .+... .++++
T Consensus       108 ~dG~~----~~~l~~~~~~~P-------~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~---~~l~~Pnglav  173 (318)
T 3sov_A          108 LDGSL----RKVLFWQELDQP-------RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---SEIYWPNGLTL  173 (318)
T ss_dssp             TTSCS----CEEEECSSCSSE-------EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSCEEEEEE
T ss_pred             CCCCc----EEEEEeCCCCCc-------cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE---CCCCCccEEEE
Confidence            87654    33332  22211       23233   588998863 34689999987533222211   11111 24454


Q ss_pred             e--CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 D--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .  +++||+.+...+.|+++|.+...=+.+.. .....+.+++..++.+|+.-..+..|..+|..++
T Consensus       174 d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          174 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             eccCCEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            3  78999999878899999998654343332 1234456677778999999777889999998644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.99  E-value=0.077  Score=49.57  Aligned_cols=170  Identities=13%  Similarity=0.003  Sum_probs=98.7

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCC--CCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGE--LKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~--~p~~~  240 (387)
                      .+.++|+.+.....+.+-  .....+.+.  .+++||+.--.        ...+..+++....    ...+..  +..+.
T Consensus        97 ~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~~--------~~~I~r~~~~g~~----~~~~~~~~~~~p~  162 (386)
T 3v65_B           97 DIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDVT--------LDRILRANLNGSN----VEEVVSTGLESPG  162 (386)
T ss_dssp             CEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCC----EEEEECSSCSCCC
T ss_pred             cceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeCC--------CCcEEEEecCCCC----cEEEEeCCCCCcc
Confidence            567778777665554321  111122222  35789997422        2478889988776    555432  21111


Q ss_pred             ccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEEe--CCeEEEEeCCC-CeEEEEeCCC
Q 016552          241 FSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMD--EEVLYGIDENS-CTLSRYDEVM  315 (387)
Q Consensus       241 ~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~--~~~ly~~~~~~-~~l~~yd~~~  315 (387)
                           ..++- .++.||+.......|.++|+....-..+..   ..... ..+++.  ++.||+.+... +.|++++++.
T Consensus       163 -----glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          163 -----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             -----CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             -----EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence                 12222 478999987666789999987654332221   11112 234444  78999998655 7899999987


Q ss_pred             CceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccC
Q 016552          316 DDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ..=+.+... ....+..++.  .+++||+.-.....|..+|.+.
T Consensus       235 ~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          235 SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             CSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             CCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            643333221 1222333333  4688888866677888888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.98  E-value=0.016  Score=52.16  Aligned_cols=178  Identities=11%  Similarity=0.004  Sum_probs=88.7

Q ss_pred             ccEEEecc-CCceeeCCCCCCCCc-ceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECC--CCccccCeEEcCCCCCC
Q 016552          165 RPLIFDPI-CRTWTFGPELVTPRR-WCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLM--NGEKNSRWEKTGELKDG  239 (387)
Q Consensus       165 ~~~vyd~~-t~~W~~l~~~p~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~~~~~W~~~~~~p~~  239 (387)
                      .+.+||.. +++.+.+...+.... ...+..-++ .||+.+..+        ..+.+||..  +++    +..+..++..
T Consensus        16 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~~~~~~~~~~~----~~~~~~~~~~   83 (343)
T 1ri6_A           16 QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE--------FRVLAYRIAPDDGA----LTFAAESALP   83 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT--------TEEEEEEECTTTCC----EEEEEEEECS
T ss_pred             eEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCC--------CeEEEEEecCCCCc----eeeccccccC
Confidence            57778774 445544332222221 112222244 466654321        367787776  666    7765543322


Q ss_pred             CccccceEEEEECCE-EEEEeeeCCeEEEEECCCCc-eeecccccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCC
Q 016552          240 RFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYDEVM  315 (387)
Q Consensus       240 ~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~~  315 (387)
                      ...  ...+..-+|+ +|+.+..+..+.+||+..+. ...+.. .........+++  .++.||+.+...+.+.+||.++
T Consensus        84 ~~~--~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           84 GSL--THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SCC--SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCC--cEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            111  1222233555 65555444678999884221 222211 111111122233  2446777664578899999987


Q ss_pred             -CceeEcc--cccc--ccCceEE-EEeCCe-EEEEecCCCeEEEEeccC
Q 016552          316 -DDWKEVV--KSDL--LKGARHA-AAGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       316 -~~W~~v~--~~~~--~~~~~~~-~~~~g~-i~v~gg~~~~i~~~d~~~  357 (387)
                       ++...+.  ....  ......+ ..-+|+ +|+.+...+.+.+||+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence             6665433  2111  1112222 233555 667766778899999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.98  E-value=0.11  Score=47.03  Aligned_cols=184  Identities=9%  Similarity=-0.010  Sum_probs=96.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEE---EeCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG---CSRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      ++..++.|+.+       ..+.+||..+.+-..+....  ......+   ..++++++.|+.+.        .+.+||..
T Consensus        97 ~~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg--------~i~vwd~~  159 (368)
T 3mmy_A           97 DGSKVFTASCD-------KTAKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSCVMTGSWDK--------TLKFWDTR  159 (368)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTTEEEEEEECS--SCEEEEEEEECSSCEEEEEEETTS--------EEEEECSS
T ss_pred             CCCEEEEEcCC-------CcEEEEEcCCCCceeecccc--CceEEEEEEeCCCCCEEEEccCCC--------cEEEEECC
Confidence            45566666533       36889999888766533211  1112222   23567777777654        78899988


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc--eeecccccccCCCCcEEEE-eCC---
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT--WDDMREGMVRGWRGPVAAM-DEE---  296 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~--W~~~~~~~~~~~~~~~~~~-~~~---  296 (387)
                      +.+    -...-..+..     ..........+ +++..+..+.+||.....  +..+..  .........++ .+.   
T Consensus       160 ~~~----~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  227 (368)
T 3mmy_A          160 SSN----PMMVLQLPER-----CYCADVIYPMA-VVATAERGLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQNK  227 (368)
T ss_dssp             CSS----CSEEEECSSC-----EEEEEEETTEE-EEEEGGGCEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTTSC
T ss_pred             CCc----EEEEEecCCC-----ceEEEecCCee-EEEeCCCcEEEEEeccccchhhhccc--cccCCCceEEEcccCCCC
Confidence            776    2221111111     12233344444 444444578999987653  333322  11111122221 111   


Q ss_pred             -eEEEEeCCCCeEEEEeCCCCce-eEcccccccc------------CceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          297 -VLYGIDENSCTLSRYDEVMDDW-KEVVKSDLLK------------GARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       297 -~ly~~~~~~~~l~~yd~~~~~W-~~v~~~~~~~------------~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                       ..++.+..++.+..||.....- ..+.......            .....+  ..++++++.|+..+.|.+||+.+.
T Consensus       228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence             2356666788999999877522 1111111110            022222  236778888888888999999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.95  E-value=0.037  Score=49.32  Aligned_cols=176  Identities=13%  Similarity=0.033  Sum_probs=95.1

Q ss_pred             CccEEEeccCCceeeCCCC--C-CCCcceeEEE-eC-CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-CCCC
Q 016552          164 TRPLIFDPICRTWTFGPEL--V-TPRRWCAAGC-SR-GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-GELK  237 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~--p-~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-~~~p  237 (387)
                      ..+++||+.+++++.+...  . ........+. -+ +++|+....         +.+.+||+. ++    ...+ ....
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~---------~~l~~~d~~-g~----~~~~~~~~~  111 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---------LGLLVVQTD-GT----FEEIAKKDS  111 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---------TEEEEEETT-SC----EEECCSBCT
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC---------CCEEEEeCC-CC----EEEEEeccC
Confidence            3689999988888764320  0 0011112222 35 789987531         257889998 77    6655 3221


Q ss_pred             CCC-ccccceEEEEECCEEEEEeeeC---------------CeEEEEECCCCceeecccccccCCCCcEEEEe-----CC
Q 016552          238 DGR-FSREAIDAVGWKGKLCLVNVKG---------------AEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-----EE  296 (387)
Q Consensus       238 ~~~-~~~~~~~~~~~~g~lyv~gg~~---------------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-----~~  296 (387)
                      ... .......++--+|++|+.....               ..+..||+. ++...+.....  . ...+++.     ++
T Consensus       112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~--~-~~~i~~~~~~d~dg  187 (314)
T 1pjx_A          112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ--F-PNGIAVRHMNDGRP  187 (314)
T ss_dssp             TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES--S-EEEEEEEECTTSCE
T ss_pred             CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC--C-cceEEEecccCCCC
Confidence            111 1101122222368899876432               468889987 55544322111  1 1233333     34


Q ss_pred             -eEEEEeCCCCeEEEEeCC-CCceeEcc---ccccc--cCceEEE-EeCCeEEEEecCCCeEEEEeccC
Q 016552          297 -VLYGIDENSCTLSRYDEV-MDDWKEVV---KSDLL--KGARHAA-AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       297 -~ly~~~~~~~~l~~yd~~-~~~W~~v~---~~~~~--~~~~~~~-~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                       .||+.+...+.|++||.+ ++......   ..+..  .....++ .-+|.+|+....++.|.+||+.+
T Consensus       188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          188 YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence             588887667889999976 34332211   11111  1122222 34688888866677899999873

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.94  E-value=0.013  Score=55.56  Aligned_cols=145  Identities=7%  Similarity=-0.047  Sum_probs=82.5

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE---ECCEEEEEeeeCCeEEEEECCC
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG---WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~---~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++.+.|+.+.        .|.+||..+..    -..+-.+.....   ...++.   .++.+.+.++.+..+.++|.++
T Consensus       132 ~~~lasGs~dg--------~i~lWd~~~~~----~~~~~~~~gH~~---~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          132 PSTVAVGSKGG--------DIMLWNFGIKD----KPTFIKGIGAGG---SITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             TTCEEEEETTS--------CEEEECSSCCS----CCEEECCCSSSC---CCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CCEEEEEeCCC--------EEEEEECCCCC----ceeEEEccCCCC---CEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            45666666544        67888887766    332221111100   122332   2566666666667899999988


Q ss_pred             CceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--C-CeEEEEecCCC
Q 016552          273 NTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--G-GRVCAVCENGG  348 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~-g~i~v~gg~~~  348 (387)
                      +.-..+...........++++ .++.+++.++.++.|..||.++..   +..+.........+..  + ..+++.|+...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCcc
Confidence            766544321111111223333 366777888888999999997653   2222223333333333  3 44777777778


Q ss_pred             eEEEEeccCC
Q 016552          349 GIVVVDVKAA  358 (387)
Q Consensus       349 ~i~~~d~~~~  358 (387)
                      .|.+||+.+.
T Consensus       274 ~v~iwd~~~~  283 (435)
T 4e54_B          274 TVKIWDLRQV  283 (435)
T ss_dssp             BCCEEETTTC
T ss_pred             eeeEEecccc
Confidence            8999998754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.94  E-value=0.13  Score=48.82  Aligned_cols=194  Identities=9%  Similarity=-0.044  Sum_probs=98.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCC----ceeeCC-------CCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICR----TWTFGP-------ELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAK  214 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~----~W~~l~-------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  214 (387)
                      ..+||+-|..       .+.++++|..++    +-.+.-       .....+.+...+.-++ |||..-.+.  ++..-.
T Consensus        95 r~~l~v~~l~-------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~--~g~~~g  164 (462)
T 2ece_A           95 RRFLIVPGLR-------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE--EGEGPG  164 (462)
T ss_dssp             SCEEEEEBTT-------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET--TSCSCC
T ss_pred             CCEEEEccCC-------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc--CCCCCC
Confidence            3456665542       257999998877    322211       1111232333444566 877432221  223346


Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee-------------------eCCeEEEEECCCCce
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV-------------------KGAEGAVYDVVANTW  275 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg-------------------~~~~i~~yD~~~~~W  275 (387)
                      .+.++|.+|.+...+|..- ..+.. +.  ......-++++++...                   +++.+.+||..+++ 
T Consensus       165 ~v~vlD~~T~~v~~~~~~~-~~~~~-~~--Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-  239 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEID-RGDQY-LA--YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-  239 (462)
T ss_dssp             EEEEECTTTCCEEEECCSB-CTTCC-CC--CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-
T ss_pred             eEEEEECCCCeEEEEEccC-CCCcc-cc--ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-
Confidence            8999999988733334311 11111 11  0011122444444442                   24789999998753 


Q ss_pred             eecccccccCCC--CcE-EEE----eCCeEEEEeC-----CCCeEEEEeCCCCceeEcccc--cc---------------
Q 016552          276 DDMREGMVRGWR--GPV-AAM----DEEVLYGIDE-----NSCTLSRYDEVMDDWKEVVKS--DL---------------  326 (387)
Q Consensus       276 ~~~~~~~~~~~~--~~~-~~~----~~~~ly~~~~-----~~~~l~~yd~~~~~W~~v~~~--~~---------------  326 (387)
                       .+.. ...+..  .+. +.+    .+..+|+...     -++.|++|..+.+.|..+...  +.               
T Consensus       240 -~~~t-I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~  317 (462)
T 2ece_A          240 -RIHS-LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK  317 (462)
T ss_dssp             -EEEE-EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred             -EeeE-EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence             2222 222111  111 111    2456888776     566777765555778765521  11               


Q ss_pred             ---ccCceEEEEeCCe-EEEEecCCCeEEEEecc
Q 016552          327 ---LKGARHAAAGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       327 ---~~~~~~~~~~~g~-i~v~gg~~~~i~~~d~~  356 (387)
                         .......+..+|+ ||+-..+.+.|.+||++
T Consensus       318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence               1112323444555 77776777899999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.94  E-value=0.075  Score=48.90  Aligned_cols=143  Identities=9%  Similarity=-0.025  Sum_probs=83.8

Q ss_pred             EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEE-EE--CCEEEEEeeeCCeEEEEECCCC
Q 016552          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV-GW--KGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~-~~--~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      ++++.|+.+.        .+.+||..+.+    ............   ...++ ..  ++.+.+.++.+..+.++|..+.
T Consensus        87 ~~l~s~~~dg--------~i~iwd~~~~~----~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG--------DIILWDYDVQN----KTSFIQGMGPGD---AITGMKFNQFNTNQLFVSSIRGATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS--------CEEEEETTSTT----CEEEECCCSTTC---BEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred             CEEEEEcCCC--------eEEEEeCCCcc----cceeeecCCcCC---ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence            5777776544        78899999887    655433211111   12233 33  3466666666678999999987


Q ss_pred             ceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCe-EEEEecCCCe
Q 016552          274 TWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGR-VCAVCENGGG  349 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~-i~v~gg~~~~  349 (387)
                      ....+...........+++. .++.+++.++.++.+..||.....-..+.   ........+.  -+++ +++.|+....
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK---LHKAKVTHAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE---CSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec---cCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence            66555431111111122332 35566777777889999999654332222   2222222232  3455 8888888889


Q ss_pred             EEEEeccC
Q 016552          350 IVVVDVKA  357 (387)
Q Consensus       350 i~~~d~~~  357 (387)
                      +.+||+.+
T Consensus       229 i~iwd~~~  236 (383)
T 3ei3_B          229 VKLWDLRN  236 (383)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEeCCC
Confidence            99999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.1  Score=47.16  Aligned_cols=198  Identities=11%  Similarity=-0.008  Sum_probs=95.6

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..++.++.+       ..+.+||..+.+-...-....+ .......-+++.+++++.+.   ......+.+||..+..
T Consensus        85 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~---~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           85 FTKYCVTGSAD-------YSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFLAILDNV---MKNPGSINIYEIERDS  153 (369)
T ss_dssp             TSSEEEEEETT-------TEEEEEETTTCCEEEEEECSSC-EEEEEECTTSSEEEEEECCB---TTBCCEEEEEEEEECT
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEeecCCC-eEEEEEccCCCEEEEecCCc---cCCCCEEEEEEecCCc
Confidence            35566666643       3688999887765443221111 11112222455556555431   1122367778776654


Q ss_pred             cccCeEEcCCCCCCCcc--c--cceEEEE--ECCEEEEEeeeCCeEEEEECCCC-ce-eecccccccCCCCcEEEEe-CC
Q 016552          226 KNSRWEKTGELKDGRFS--R--EAIDAVG--WKGKLCLVNVKGAEGAVYDVVAN-TW-DDMREGMVRGWRGPVAAMD-EE  296 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~--~--~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~-~W-~~~~~~~~~~~~~~~~~~~-~~  296 (387)
                      ....+......+.....  .  ....++.  -++++.+.++.+..+.+||+.++ .- ..+..   ......+++.. ++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDL  230 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC---CSSCEEEEEECTTS
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec---CCCceeEEEECCCC
Confidence            21112222111110000  0  0122222  25666666666678999999873 32 12211   11111233332 55


Q ss_pred             eEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCC--------------eEEEEeccCC
Q 016552          297 VLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGG--------------GIVVVDVKAA  358 (387)
Q Consensus       297 ~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~--------------~i~~~d~~~~  358 (387)
                      .+++.+..++.|.+||..+..-........ .........+++.+++++...              .+.+||..+.
T Consensus       231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVSTLQVLKKYETDC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE  305 (369)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred             CEEEEecCCceEEEEECCCCceeeeecCCC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence            666666678899999998765443322111 111222334556666655433              6778887644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.92  E-value=0.16  Score=51.25  Aligned_cols=198  Identities=17%  Similarity=0.189  Sum_probs=111.4

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCC--------cceeEEEeCCEEEEEecCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR--------RWCAAGCSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      ..++.++.||+....        ..++.+|..|.  .|+.-...+...        .....++.+++||+... +     
T Consensus        61 ~P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-d-----  126 (668)
T 1kv9_A           61 TPLFHDGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-D-----  126 (668)
T ss_dssp             CCEEETTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-T-----
T ss_pred             CCEEECCEEEEECCC--------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-C-----
Confidence            345678999987652        25788998876  588744322110        11234567889988532 1     


Q ss_pred             CCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeee-----CCeEEEEECCCCc--eeeccc-cc
Q 016552          211 DVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVANT--WDDMRE-GM  282 (387)
Q Consensus       211 ~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~~~--W~~~~~-~~  282 (387)
                         ..+.++|..+++..  |+.-..-+..... .....++.++++|+..+.     ...+.+||.++++  |+.-.. ..
T Consensus       127 ---g~l~alD~~tG~~~--W~~~~~~~~~~~~-~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  200 (668)
T 1kv9_A          127 ---GRLIALDAKTGKAI--WSQQTTDPAKPYS-ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD  200 (668)
T ss_dssp             ---SEEEEEETTTCCEE--EEEECSCTTSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred             ---CEEEEEECCCCCEe--eeeccCCCCCcce-ecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC
Confidence               36889999988866  8865421111111 112335679999876432     2579999998874  865311 01


Q ss_pred             ccC-------------CCC-------------cEEEE--eCCeEEEEeCCC------------------CeEEEEeCCCC
Q 016552          283 VRG-------------WRG-------------PVAAM--DEEVLYGIDENS------------------CTLSRYDEVMD  316 (387)
Q Consensus       283 ~~~-------------~~~-------------~~~~~--~~~~ly~~~~~~------------------~~l~~yd~~~~  316 (387)
                      +..             +.+             ...++  .++.+|+-.++.                  +.|+++|++++
T Consensus       201 p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG  280 (668)
T 1kv9_A          201 PALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG  280 (668)
T ss_dssp             TTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred             CCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence            100             000             12233  346676654321                  25999999887


Q ss_pred             --ceeEcccccc-----ccCceEE--EEeCCe---EEEEecCCCeEEEEeccCC
Q 016552          317 --DWKEVVKSDL-----LKGARHA--AAGGGR---VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       317 --~W~~v~~~~~-----~~~~~~~--~~~~g~---i~v~gg~~~~i~~~d~~~~  358 (387)
                        .|+.-.....     ......+  ...+|+   +++++..++.++++|..++
T Consensus       281 ~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          281 KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence              4765322111     1112222  234676   5666667788999998765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.92  E-value=0.05  Score=50.16  Aligned_cols=105  Identities=6%  Similarity=-0.139  Sum_probs=59.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeeccccc--ccCCC--CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VRGWR--GPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~~~~--~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~  327 (387)
                      +++..+.++.+..+.+||..+.+-.......  .....  ........+..+++...++.+.+||..+..-.  ..+...
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~  333 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--TMLKGH  333 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--EEECCC
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--eeeccC
Confidence            6666667776678999999877533221100  00101  11111222233444445678999998776432  222222


Q ss_pred             cCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          328 KGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...  ......++++++.|+..+.+.+||+.+.
T Consensus       334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            222  2233446788888888888999999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.14  Score=46.20  Aligned_cols=191  Identities=10%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             EEEEecccCCCCCCCCccEEEeccCCceeeCCCCC---CCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          149 LILLAATTHNFNPALTRPLIFDPICRTWTFGPELV---TPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       149 l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p---~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      +++.|+.+       ..+.+||..++....+..+.   ......+.+ .-++++++.|+.+.        .+.+||....
T Consensus        26 ~las~~~D-------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~--------~v~iw~~~~~   90 (330)
T 2hes_X           26 ILATGSTD-------RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS--------TVSIWAKEES   90 (330)
T ss_dssp             EEEEEESS-------SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS--------CEEEEEC---
T ss_pred             EEEEEcCC-------CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC--------cEEEEEcccC
Confidence            55666533       35788888876544332221   111111122 22567777777654        6778887532


Q ss_pred             ccc-cCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC--CceeecccccccCCCCcEEEE-eCCeE
Q 016552          225 EKN-SRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA--NTWDDMREGMVRGWRGPVAAM-DEEVL  298 (387)
Q Consensus       225 ~~~-~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~--~~W~~~~~~~~~~~~~~~~~~-~~~~l  298 (387)
                      ... ..+..+..+....   ....++.+  +|++.+.++.+..+.++|...  ..+..+...........+++. .++.+
T Consensus        91 ~~~~~~~~~~~~~~~h~---~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  167 (330)
T 2hes_X           91 ADRTFEMDLLAIIEGHE---NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL  167 (330)
T ss_dssp             ----CCCEEEEEEC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred             cCccccceeEEEEcCCC---CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence            100 0033222111110   01222322  577666777677899999843  234333210000111122332 25566


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--C--CeEEEEecCCCeEEEEeccC
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--G--GRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~--g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ++.++.++.+..||..++.|..+..+.........+..  +  +..++.|+....|-+||+.+
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            77777788999999988888776655443333323332  2  34566666677788888753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.91  E-value=0.15  Score=47.20  Aligned_cols=180  Identities=7%  Similarity=-0.007  Sum_probs=98.0

Q ss_pred             ccEEEeccCCceeeCC--CCCCCCc--ceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC
Q 016552          165 RPLIFDPICRTWTFGP--ELVTPRR--WCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~--~~p~~r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~  238 (387)
                      .+.+||..+++-...-  ..+....  ....+.  .++.+++.|+.+.        .+.+||.......  -..+.....
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~~~~~~~--~~~~~~h~~  250 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDLRITSRA--VRTYHGHEG  250 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEETTTTCCC--CEEECCCSS
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEECCCCCcc--eEEECCcCC
Confidence            5788898887644321  1111111  111111  2567888887755        7788998643200  222221111


Q ss_pred             CCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccc---cC-C-CCcEEEE-eCCeEEEEeCCCCeEEEEe
Q 016552          239 GRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMV---RG-W-RGPVAAM-DEEVLYGIDENSCTLSRYD  312 (387)
Q Consensus       239 ~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~---~~-~-~~~~~~~-~~~~ly~~~~~~~~l~~yd  312 (387)
                      . .   ...+..-++..++.++.+..+.++|+.++.-...-...+   .. . ...++++ .+|++++.+..++.+.+||
T Consensus       251 ~-v---~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          251 D-I---NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             C-C---CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             C-e---EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            1 1   011222367777777777889999998875322111000   00 0 1123333 3667777787789999999


Q ss_pred             CCCCceeE-cccc-ccccCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          313 EVMDDWKE-VVKS-DLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       313 ~~~~~W~~-v~~~-~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..+.+-.. +... ......  ......+|+.++.|+....+.+||++..
T Consensus       327 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          327 TLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             TTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            87765432 2121 112222  3233457888888888889999998853

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.91  E-value=0.059  Score=48.46  Aligned_cols=182  Identities=10%  Similarity=-0.048  Sum_probs=97.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCc----eeeCCCCCCCCcceeE-EEeCCE-EEEEecCCCCCCCCCcceEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRT----WTFGPELVTPRRWCAA-GCSRGA-VYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~----W~~l~~~p~~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ++.+++.|+.+       ..+.+||..+..    -..+.  .......+. ..-+++ .++.|+.+.        .+.+|
T Consensus        22 ~~~~l~~~~~d-------~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg--------~i~~w   84 (342)
T 1yfq_A           22 SKSLLLITSWD-------GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQG--------EILKV   84 (342)
T ss_dssp             GGTEEEEEETT-------SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTS--------CEEEE
T ss_pred             CCCEEEEEcCC-------CeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCC--------eEEEE
Confidence            34555665532       357888887765    33222  111112222 233567 667776543        78899


Q ss_pred             EC-CCCccccCeEEcCC--CCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc-------eeecccccccCCCCc
Q 016552          220 DL-MNGEKNSRWEKTGE--LKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT-------WDDMREGMVRGWRGP  289 (387)
Q Consensus       220 d~-~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~-------W~~~~~~~~~~~~~~  289 (387)
                      |. .+..    -..+..  .....     .......+.+++.++.+..+.+||+.+..       .+.+.. ........
T Consensus        85 d~~~~~~----~~~~~~~~~~~~v-----~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~  154 (342)
T 1yfq_A           85 DLIGSPS----FQALTNNEANLGI-----CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-TKVKNKIF  154 (342)
T ss_dssp             CSSSSSS----EEECBSCCCCSCE-----EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-SSSCCCEE
T ss_pred             EeccCCc----eEeccccCCCCce-----EEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeE-EeeCCceE
Confidence            99 8887    655553  22111     22223325555666666789999876510       111211 11111123


Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCC-Cc--eeEccccccccCc-eEEEE-e-CCeEEEEecCCCeEEEEeccC
Q 016552          290 VAAMDEEVLYGIDENSCTLSRYDEVM-DD--WKEVVKSDLLKGA-RHAAA-G-GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       290 ~~~~~~~~ly~~~~~~~~l~~yd~~~-~~--W~~v~~~~~~~~~-~~~~~-~-~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++...+. ++.+..++.+..||.++ ..  ......  ..... .++.. . +++.+++|+..+.+.++|...
T Consensus       155 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          155 TMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             EEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             EEEecCCc-EEEEeCCCeEEEEECCccccccceeeec--CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence            44455555 55555678999999987 43  222111  11122 22222 2 578888888888888888764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.90  E-value=0.012  Score=53.38  Aligned_cols=143  Identities=8%  Similarity=0.046  Sum_probs=81.7

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeC----CeEEEE
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKG----AEGAVY  268 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~----~~i~~y  268 (387)
                      +++||+.+..+        ..+.+||+.+++    ...+...+...     ..++.  -+|++|+.....    ..+.+|
T Consensus        55 ~g~l~~~~~~~--------~~i~~~d~~~~~----~~~~~~~~~~~-----~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           55 QGQLFLLDVFE--------GNIFKINPETKE----IKRPFVSHKAN-----PAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             TSCEEEEETTT--------CEEEEECTTTCC----EEEEEECSSSS-----EEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             CCCEEEEECCC--------CEEEEEeCCCCc----EEEEeeCCCCC-----cceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            56888876542        278899999888    76543111111     22333  367888876433    479999


Q ss_pred             ECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCC------CCeEEEEeCCCCceeEccccccccCceEEE-EeCCe-
Q 016552          269 DVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDEN------SCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGGR-  339 (387)
Q Consensus       269 D~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~------~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g~-  339 (387)
                      |++++.-..+-...........+++ .+|++|+.+..      .+.|+.||+++.+...+..  .......++ .-+|+ 
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKV  195 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCE
Confidence            9988765522110111111122333 36788887642      3579999998876665432  111122222 23454 


Q ss_pred             EEEEecCCCeEEEEecc
Q 016552          340 VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       340 i~v~gg~~~~i~~~d~~  356 (387)
                      ||+.......|.+||+.
T Consensus       196 l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          196 LWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCeEEEEEec
Confidence            77765556778888885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.022  Score=52.99  Aligned_cols=192  Identities=8%  Similarity=0.021  Sum_probs=97.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccC-----CceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPIC-----RTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t-----~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      ++.+++.|+.+       ..+.+||..+     ..-..+.....+  ....+..  ++++++.|+.+.        .+.+
T Consensus        78 ~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg--------~v~i  140 (416)
T 2pm9_A           78 NNKIIAGALDN-------GSLELYSTNEANNAINSMARFSNHSSS--VKTVKFNAKQDNVLASGGNNG--------EIFI  140 (416)
T ss_dssp             SSSCEEEEESS-------SCEEEECCSSTTSCCCEEEECCCSSSC--CCEEEECSSSTTBEEEECSSS--------CEEB
T ss_pred             CCCeEEEEccC-------CeEEEeecccccccccchhhccCCccc--eEEEEEcCCCCCEEEEEcCCC--------eEEE
Confidence            45566666532       2578888877     122333222111  1112222  266777776544        6788


Q ss_pred             EECCCCcccc---CeEEcCCCCCCCccccceEEEEE--C-CEEEEEeeeCCeEEEEECCCCceeecccccc--c--CCCC
Q 016552          219 WDLMNGEKNS---RWEKTGELKDGRFSREAIDAVGW--K-GKLCLVNVKGAEGAVYDVVANTWDDMREGMV--R--GWRG  288 (387)
Q Consensus       219 yd~~~~~~~~---~W~~~~~~p~~~~~~~~~~~~~~--~-g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~--~--~~~~  288 (387)
                      ||..+.....   .-..+.......   ....++.+  + +.+++.++.+..+.+||..+.+-...-....  .  ....
T Consensus       141 wd~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          141 WDMNKCTESPSNYTPLTPGQSMSSV---DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             CBTTTTSSCTTTCCCBCCCCSCCSS---CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EECCCCccccccccccccccccCCC---CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            8887664000   011111011000   01122222  3 5666776666789999998875432211110  0  1112


Q ss_pred             cEEEEe--CCeEEEEeCCCC---eEEEEeCCCCceeEccccc-cccCceEEEEe---CCeEEEEecCCCeEEEEeccCC
Q 016552          289 PVAAMD--EEVLYGIDENSC---TLSRYDEVMDDWKEVVKSD-LLKGARHAAAG---GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~~~--~~~ly~~~~~~~---~l~~yd~~~~~W~~v~~~~-~~~~~~~~~~~---~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+++..  ++.+++.+..++   .|.+||..+..- .+.... ........+..   ++++++.++....+.+||+.+.
T Consensus       218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            233333  235677766666   899999987531 111222 22222223332   6788888888888999998854

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.89  E-value=0.054  Score=48.93  Aligned_cols=197  Identities=10%  Similarity=-0.019  Sum_probs=107.9

Q ss_pred             eEEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC----CCcceeEEEe-CCEEEEEecCCCCCC---
Q 016552          140 VQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT----PRRWCAAGCS-RGAVYVASGIGSQFS---  209 (387)
Q Consensus       140 ~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~----~r~~~~~~~~-~~~iyv~GG~~~~~~---  209 (387)
                      ..++..  ++.||+....        ..+.++|+.++..+.+.....    .+..-.++.- +++|||.-.... +.   
T Consensus        83 ~gi~~~~~~g~l~v~d~~--------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~-~~~~~  153 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCY--------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL-YDDRG  153 (322)
T ss_dssp             EEEEEETTTTEEEEEETT--------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS-CCTTC
T ss_pred             ceEEEcCCCCcEEEEECC--------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccc-ccccc
Confidence            445554  5788887431        237889988776655432211    1111122223 578999743210 00   


Q ss_pred             -------CCCcceEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCC---ceee
Q 016552          210 -------SDVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVAN---TWDD  277 (387)
Q Consensus       210 -------~~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~---~W~~  277 (387)
                             ......+.+||+.+.+    ...+. .+..+     ...+..-+| .||+.......+.+||+...   +.+.
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~----~~~~~~~~~~p-----~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~  224 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKE----TTLLLKELHVP-----GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV  224 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTE----EEEEEEEESCC-----CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred             cceehcccCCCceEEEEeCCCCE----EEEeccCCccC-----cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence                   0112468899998877    55432 11111     111222245 48887655578999998753   3333


Q ss_pred             cccccccCCCCcEEEE-eCCeEEEEeCC----------CCeEEEEeCCCCceeEcccccc--ccCceEEEEeCCeEEEEe
Q 016552          278 MREGMVRGWRGPVAAM-DEEVLYGIDEN----------SCTLSRYDEVMDDWKEVVKSDL--LKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       278 ~~~~~~~~~~~~~~~~-~~~~ly~~~~~----------~~~l~~yd~~~~~W~~v~~~~~--~~~~~~~~~~~g~i~v~g  344 (387)
                      ... .+ +  ...+++ .+|.||+....          .+.|.+||++...-..+.....  ......++..+|+|||.+
T Consensus       225 ~~~-~~-g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~  300 (322)
T 2fp8_A          225 LVK-IP-N--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT  300 (322)
T ss_dssp             EEE-CS-S--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred             EEe-CC-C--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence            221 11 1  122333 35678887643          3569999997664444443221  233344455689999997


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      ..+..|.+|++..+
T Consensus       301 ~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          301 LFHGSVGILVYDKK  314 (322)
T ss_dssp             SSCSEEEEEEC---
T ss_pred             cCCCceEEEecccc
Confidence            78899999998744

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.88  E-value=0.12  Score=45.96  Aligned_cols=148  Identities=7%  Similarity=0.048  Sum_probs=81.5

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE----CCEEEEEeeeCCeEEEEEC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW----KGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~----~g~lyv~gg~~~~i~~yD~  270 (387)
                      +++.++.|+.+.        .+.+||..++.    ...+..+....   ....++.+    ++.+.+.++.+..+.++|.
T Consensus        20 ~g~~las~s~D~--------~v~iw~~~~~~----~~~~~~l~gH~---~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B           20 YGKRMATCSSDK--------TIKIFEVEGET----HKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             TSSEEEEEETTS--------CEEEEEBCSSC----BCCCEEECCCS---SCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             CCCEEEEEeCCC--------EEEEEecCCCC----cEEEEEEcccc---CCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            567777777654        67888887654    32222121110   11223333    2667677777789999999


Q ss_pred             CCCceeecccccccCCCCcEEEEe-C--CeEEEEeCCCCeEEEEeCCCCc-eeEccccccccCceEEEEe----------
Q 016552          271 VANTWDDMREGMVRGWRGPVAAMD-E--EVLYGIDENSCTLSRYDEVMDD-WKEVVKSDLLKGARHAAAG----------  336 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~~~-~--~~ly~~~~~~~~l~~yd~~~~~-W~~v~~~~~~~~~~~~~~~----------  336 (387)
                      .++.|..+...........+++.. +  +.+++.++.++.+..||..+.. +.. ............+..          
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCccccccc
Confidence            988886554211111112233332 1  5667777778899999987652 321 111111111111111          


Q ss_pred             -----CCeEEEEecCCCeEEEEeccCC
Q 016552          337 -----GGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       337 -----~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                           +++.++.|+....|.+||+.+.
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETT
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence                 2467788777888999998753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.86  E-value=0.00043  Score=63.48  Aligned_cols=42  Identities=24%  Similarity=0.285  Sum_probs=36.6

Q ss_pred             CCCCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCC
Q 016552           39 HQPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        39 ~~~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~   80 (387)
                      +...|..||+|++.+||.+|+   +.+++.|||+|+.+..++...
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~   49 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTS
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhh
Confidence            456789999999999999999   889999999999999887753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.84  E-value=0.0058  Score=56.33  Aligned_cols=147  Identities=12%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.|+.+.        .+.+||..++.    |..+..+.....   ...++.+  ++++.+.++.+..+.+||..+
T Consensus        22 ~g~~l~~~~~d~--------~i~iw~~~~~~----~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTATN--------QVELYEQDGNG----WKHARTFSDHDK---IVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSSS--------CBCEEEEETTE----EEECCCBCCCSS---CEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             CCCEEEEecCCC--------EEEEEEccCCc----eEEEEEEecCCc---eEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            556666665543        67889999887    877765543221   1223332  566666777667899999998


Q ss_pred             Cc-eeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCc-eeEcccccc-ccCceEEEE--eCCeEEEEecC
Q 016552          273 NT-WDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDD-WKEVVKSDL-LKGARHAAA--GGGRVCAVCEN  346 (387)
Q Consensus       273 ~~-W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~-W~~v~~~~~-~~~~~~~~~--~~g~i~v~gg~  346 (387)
                      +. |..............+++.. ++++++.++.++.+.+||.++.. |..+..+.. .......+.  -++++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            87 55433211111112223322 45666666677899999998764 544443332 333333333  36778888888


Q ss_pred             CCeEEEEecc
Q 016552          347 GGGIVVVDVK  356 (387)
Q Consensus       347 ~~~i~~~d~~  356 (387)
                      ...+.+||+.
T Consensus       167 d~~i~iwd~~  176 (377)
T 3dwl_C          167 DRKAYVLSAY  176 (377)
T ss_dssp             SSCEEEEEEC
T ss_pred             CCEEEEEEEE
Confidence            8889999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.83  E-value=0.11  Score=48.96  Aligned_cols=105  Identities=10%  Similarity=-0.010  Sum_probs=60.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCc-eeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANT-WDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~-W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~  328 (387)
                      ++.+++.++....+.+||..+.. ...+...........+++..  +..+++.++.++.|.+||..+.. ..+.......
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~  321 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESHK  321 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCC
Confidence            45677777766799999998763 11111100111111233332  33478888888999999997632 1122222222


Q ss_pred             CceEEEEe--CC-eEEEEecCCCeEEEEeccC
Q 016552          329 GARHAAAG--GG-RVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~~~~~~~~--~g-~i~v~gg~~~~i~~~d~~~  357 (387)
                      .....+..  ++ .+++.++..+.|.+||+..
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            23323332  34 5788888888899999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.83  E-value=0.1  Score=47.21  Aligned_cols=145  Identities=10%  Similarity=-0.030  Sum_probs=81.7

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEE-cCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECC
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEK-TGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~-~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~  271 (387)
                      +.+++.|+.+.        .+.+||..+.+    -.. +.....      ...++.+   ++.+++.++.+..+.+||..
T Consensus        85 ~~~l~~~~~dg--------~i~v~d~~~~~----~~~~~~~~~~------~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           85 HPLLAVAGSRG--------IIRIINPITMQ----CIKHYVGHGN------AINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             CEEEEEEETTC--------EEEEECTTTCC----EEEEEESCCS------CEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCEEEEecCCC--------EEEEEEchhce----EeeeecCCCC------cEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            56777777644        78899988776    222 211111      1223333   56777777777789999998


Q ss_pred             CCceeecccc-cccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcccc-----c-------------------
Q 016552          272 ANTWDDMREG-MVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKS-----D-------------------  325 (387)
Q Consensus       272 ~~~W~~~~~~-~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-----~-------------------  325 (387)
                      +++-...-.. ........+++. .++..++.++.++.+.+||..+.+-......     +                   
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            8754332110 011111223333 2455666666788999999986532211000     0                   


Q ss_pred             --cccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          326 --LLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       326 --~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                        .......++...+.+++.++....+.+||+.+.
T Consensus       227 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          227 RDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CSSCSSCCCEEEEETTEEEEECSSSEEEEEEESST
T ss_pred             ccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCc
Confidence              012223333333777788788889999998754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.82  E-value=0.24  Score=44.83  Aligned_cols=183  Identities=13%  Similarity=0.022  Sum_probs=98.6

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +.+|+++...       ..+++||+.+++.+... ++. .....+..-++++|+...          ..+.+||+.+++ 
T Consensus        61 ~~l~~~d~~~-------~~i~~~d~~~~~~~~~~-~~~-~v~~i~~~~dg~l~v~~~----------~gl~~~d~~~g~-  120 (326)
T 2ghs_A           61 GTAWWFNILE-------RELHELHLASGRKTVHA-LPF-MGSALAKISDSKQLIASD----------DGLFLRDTATGV-  120 (326)
T ss_dssp             TEEEEEEGGG-------TEEEEEETTTTEEEEEE-CSS-CEEEEEEEETTEEEEEET----------TEEEEEETTTCC-
T ss_pred             CEEEEEECCC-------CEEEEEECCCCcEEEEE-CCC-cceEEEEeCCCeEEEEEC----------CCEEEEECCCCc-
Confidence            6788876532       36899999988765432 221 112222334788887641          147889999888 


Q ss_pred             ccCeEEcCCCCCCC-ccccceEEEEECCEEEEEeee------CCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-e
Q 016552          227 NSRWEKTGELKDGR-FSREAIDAVGWKGKLCLVNVK------GAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-V  297 (387)
Q Consensus       227 ~~~W~~~~~~p~~~-~~~~~~~~~~~~g~lyv~gg~------~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~  297 (387)
                         ...+...+... ..+.....+--+|++|+....      ...++.||  +++...+.....   ....+++. ++ .
T Consensus       121 ---~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~---~~~~i~~s~dg~~  192 (326)
T 2ghs_A          121 ---LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS---IPNSICFSPDGTT  192 (326)
T ss_dssp             ---EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES---SEEEEEECTTSCE
T ss_pred             ---EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc---ccCCeEEcCCCCE
Confidence               77665432211 111111122236788875432      14688888  455554422111   11233333 34 6


Q ss_pred             EEEEeCCCCeEEEEeCC--CC-cee---EccccccccC-ceEE-EEeCCeEEEEecCCCeEEEEeccC
Q 016552          298 LYGIDENSCTLSRYDEV--MD-DWK---EVVKSDLLKG-ARHA-AAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~--~~-~W~---~v~~~~~~~~-~~~~-~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ||+.+...+.|++||.+  ++ ...   .+...+.... ...+ ..-+|.|++...++..|.+||+..
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC
Confidence            88887667789999975  44 221   1111111111 1222 223578888765667899998853

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.79  E-value=0.29  Score=45.31  Aligned_cols=152  Identities=10%  Similarity=-0.009  Sum_probs=83.4

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC--ccccceEEEEE--CC-EEEEEeeeCCeEEEEE
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR--FSREAIDAVGW--KG-KLCLVNVKGAEGAVYD  269 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~--~~~~~~~~~~~--~g-~lyv~gg~~~~i~~yD  269 (387)
                      ++++++.|+.+.        .+.+||..++.    ......-+...  .......++.+  ++ .+++.++.+..+.+||
T Consensus        93 ~~~~l~s~s~dg--------~v~vw~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           93 NDNVIASGSEDC--------TVMVWEIPDGG----LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             CTTEEEEEETTS--------EEEEEECCTTC----CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCC--------eEEEEEccCCC----CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            567777777644        78899988875    31100000000  00011222222  33 4666777667899999


Q ss_pred             CCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEcccccc--ccCceEEEEeCCeEEEEe--
Q 016552          270 VVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL--LKGARHAAAGGGRVCAVC--  344 (387)
Q Consensus       270 ~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~--~~~~~~~~~~~g~i~v~g--  344 (387)
                      ..+++....-..........+++.. ++.+++.++.++.|.+||+++..-........  ......+...+++++++|  
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  240 (402)
T 2aq5_A          161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS  240 (402)
T ss_dssp             TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred             CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence            9987653221000001111233332 56666677678899999998875433221111  112233344578888887  


Q ss_pred             -cCCCeEEEEeccCC
Q 016552          345 -ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 -g~~~~i~~~d~~~~  358 (387)
                       .....+.+||+.+.
T Consensus       241 ~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          241 RMSERQVALWDTKHL  255 (402)
T ss_dssp             TTCCEEEEEEETTBC
T ss_pred             CCCCceEEEEcCccc
Confidence             56788999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.78  E-value=0.16  Score=45.55  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++..+.|+.+.        .+.+||..+++.   ...+......      ..++.  -++.+.+.++.+..+.++|...
T Consensus        76 dg~~l~s~s~D~--------~v~~wd~~~~~~---~~~~~~h~~~------v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           76 DGAYALSASWDK--------TLRLWDVATGET---YQRFVGHKSD------VMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTEE---EEEEECCSSC------EEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCCe---eEEEccCCCc------EEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            567777777654        789999988871   2222211111      22222  2566667777777899999876


Q ss_pred             CceeecccccccCCCCcEEEEe-------CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEE--EEeCCeEEEE
Q 016552          273 NTWDDMREGMVRGWRGPVAAMD-------EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHA--AAGGGRVCAV  343 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~~-------~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~--~~~~g~i~v~  343 (387)
                      ..-..+... ..  ....+...       ++.+++.++.++.+..||.++..-.  ............  ...+|+.++.
T Consensus       139 ~~~~~~~~h-~~--~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~h~~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          139 QCLATLLGH-ND--WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE--ADFIGHNSNINTLTASPDGTLIAS  213 (319)
T ss_dssp             CEEEEECCC-SS--CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE--EEECCCCSCEEEEEECTTSSEEEE
T ss_pred             CeEEEEecc-CC--cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh--eeecCCCCcEEEEEEcCCCCEEEE
Confidence            543332210 00  01112221       3345666667889999999775322  222222222222  2346788888


Q ss_pred             ecCCCeEEEEeccCC
Q 016552          344 CENGGGIVVVDVKAA  358 (387)
Q Consensus       344 gg~~~~i~~~d~~~~  358 (387)
                      |+....|.+||+.+.
T Consensus       214 ~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          214 AGKDGEIMLWNLAAK  228 (319)
T ss_dssp             EETTCEEEEEETTTT
T ss_pred             EeCCCeEEEEECCCC
Confidence            888888999998854

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.78  E-value=0.1  Score=46.78  Aligned_cols=144  Identities=9%  Similarity=0.019  Sum_probs=83.5

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEE-EECCEEEEEeeeC--CeEEEEECC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV-GWKGKLCLVNVKG--AEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~-~~~g~lyv~gg~~--~~i~~yD~~  271 (387)
                      +++||+..-.        ...+.+||+....     ......+.  ..   +..+ .-+|++|+.....  ..+..||+.
T Consensus        42 ~g~lyv~d~~--------~~~I~~~d~~g~~-----~~~~~~~~--~p---~gia~~~dG~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           42 DGTIFVTNHE--------VGEIVSITPDGNQ-----QIHATVEG--KV---SGLAFTSNGDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             TSCEEEEETT--------TTEEEEECTTCCE-----EEEEECSS--EE---EEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CCCEEEEeCC--------CCeEEEECCCCce-----EEEEeCCC--Cc---eeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence            6789988432        2367889887643     22222221  10   2222 2368899887543  358889998


Q ss_pred             CCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCC---ceeEccc------cccccCceEEEEeCCeEE
Q 016552          272 ANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMD---DWKEVVK------SDLLKGARHAAAGGGRVC  341 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~---~W~~v~~------~~~~~~~~~~~~~~g~i~  341 (387)
                      +++.+.+.. .+........+ ..++.+|+.+...+.|+++|+.+.   .|..-..      .........+..-++.||
T Consensus       104 ~g~~~~~~~-~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly  182 (306)
T 2p4o_A          104 DGTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  182 (306)
T ss_dssp             TSCEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             CCeEEEEEe-CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence            888766543 22222222222 346678888766789999999764   2211111      011223344433445788


Q ss_pred             EEecCCCeEEEEeccC
Q 016552          342 AVCENGGGIVVVDVKA  357 (387)
Q Consensus       342 v~gg~~~~i~~~d~~~  357 (387)
                      +.-..+..|.+||++.
T Consensus       183 v~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEETTTTEEEEEEBCT
T ss_pred             EEeCCCCEEEEEEeCC
Confidence            8877788999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.78  E-value=0.056  Score=50.33  Aligned_cols=143  Identities=9%  Similarity=0.083  Sum_probs=82.6

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++.++.|+.+.        .+.+||..+.+    -...-.-...     ...++.+  ++...+.++.+..+.++|..+
T Consensus       134 dg~~l~s~~~d~--------~i~iwd~~~~~----~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAEDR--------LIRIWDIENRK----IVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETTS--------CEEEEETTTTE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEcCCC--------eEEEEECCCCc----EEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence            567777777644        78899998876    4322111111     1222222  566666666667899999988


Q ss_pred             CceeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEccccc-----cccCceEEE--EeCCeEEEE
Q 016552          273 NTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-----LLKGARHAA--AGGGRVCAV  343 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-----~~~~~~~~~--~~~g~i~v~  343 (387)
                      ++....-. ...  ...++++.  ++++++.++.++.+..||.++..-......+     ........+  .-+++.++.
T Consensus       197 ~~~~~~~~-~~~--~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          197 GQCSLTLS-IED--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TEEEEEEE-CSS--CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CeeEEEEE-cCC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            76432211 111  11223332  5677778777889999999887543321111     112222222  236778888


Q ss_pred             ecCCCeEEEEeccC
Q 016552          344 CENGGGIVVVDVKA  357 (387)
Q Consensus       344 gg~~~~i~~~d~~~  357 (387)
                      |+....+.+||+.+
T Consensus       274 ~s~d~~v~~wd~~~  287 (393)
T 1erj_A          274 GSLDRSVKLWNLQN  287 (393)
T ss_dssp             EETTSEEEEEEC--
T ss_pred             EeCCCEEEEEECCC
Confidence            88888899999874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.78  E-value=0.17  Score=45.76  Aligned_cols=170  Identities=11%  Similarity=-0.000  Sum_probs=94.5

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCCCcceEEEEECCC----CccccCeEEcC--CC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSDVAKSVEKWDLMN----GEKNSRWEKTG--EL  236 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~~~~~W~~~~--~~  236 (387)
                      ++.++|+.+.....+.+  .-..-.+.+..  +++||+....        ...+.++|+..    ..    -..+.  .+
T Consensus        11 ~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~--------~~~I~~~~~~g~~~~~~----~~~~~~~~~   76 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS----YDTVISRDI   76 (316)
T ss_dssp             SEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC------------CEEEECSSC
T ss_pred             eEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC--------CCcEEEEECCCCCCCcc----cEEEEeCCC
Confidence            46777877776655322  11111222322  5789998533        23788888876    22    22221  11


Q ss_pred             CCCCccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEE--eCCeEEEEeCCC-CeEEEE
Q 016552          237 KDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAM--DEEVLYGIDENS-CTLSRY  311 (387)
Q Consensus       237 p~~~~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~ly~~~~~~-~~l~~y  311 (387)
                      ..+     ...++- .++.||+.......|.++|+....-..+..   ..... ..+++  .++.||+.+... +.|+++
T Consensus        77 ~~p-----~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~  148 (316)
T 1ijq_A           77 QAP-----DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (316)
T ss_dssp             SCC-----CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CCc-----CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence            111     122222 478999987666789999988654332221   11112 23444  378999988543 789999


Q ss_pred             eCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccC
Q 016552          312 DEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++...=+.+... ....+..++.  -+++||+.-.....|.++|.+.
T Consensus       149 ~~dG~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          149 GLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ETTSCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cCCCCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            9977543333221 2223333443  3678998876778888888874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.77  E-value=0.035  Score=50.03  Aligned_cols=191  Identities=9%  Similarity=0.108  Sum_probs=101.0

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcc-eeEEE-eC--CEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRW-CAAGC-SR--GAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~-~~~~~-~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      +.+++.|+.+       ..+.+||..+..|..+..+...... .+.+. -+  +.+++.|+.+.        .+.+||..
T Consensus        71 ~~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYD-------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETT-------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred             CCEEEEEECC-------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence            5566666643       3578899988877654333222211 11222 12  55667766544        67778877


Q ss_pred             CC-ccccCeEEcCCCCCCCccccceEEEEE-------------------CCEEEEEeeeCCeEEEEECCC-Cceeecccc
Q 016552          223 NG-EKNSRWEKTGELKDGRFSREAIDAVGW-------------------KGKLCLVNVKGAEGAVYDVVA-NTWDDMREG  281 (387)
Q Consensus       223 ~~-~~~~~W~~~~~~p~~~~~~~~~~~~~~-------------------~g~lyv~gg~~~~i~~yD~~~-~~W~~~~~~  281 (387)
                      +. .    |.....+......   ..++..                   ++++++.++.+..+.++|..+ +.|..+.. 
T Consensus       136 ~~~~----~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-  207 (316)
T 3bg1_A          136 GEGQ----WEVKKINNAHTIG---CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-  207 (316)
T ss_dssp             SSSC----EEECCBTTSSSSC---BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-
T ss_pred             CCCC----cceeeeeccccCC---cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-
Confidence            65 4    6543322111100   001110                   134556666667788888864 45755432 


Q ss_pred             cccCCCC--cEEEEe-C----CeEEEEeCCCCeEEEEeCCC---CceeEccccccccCceEE--EEeCCeEEEEecCCCe
Q 016552          282 MVRGWRG--PVAAMD-E----EVLYGIDENSCTLSRYDEVM---DDWKEVVKSDLLKGARHA--AAGGGRVCAVCENGGG  349 (387)
Q Consensus       282 ~~~~~~~--~~~~~~-~----~~ly~~~~~~~~l~~yd~~~---~~W~~v~~~~~~~~~~~~--~~~~g~i~v~gg~~~~  349 (387)
                      + .+...  .+++.. +    +.+++.++.++.|..||.++   ..|.... +.........  ...++++++.++....
T Consensus       208 l-~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          208 L-EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL-LHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             C-BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE-EEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             c-ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh-hhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            1 11111  223322 2    25666677788999999876   3443211 1111222222  2346788888888888


Q ss_pred             EEEEeccCCCCCCceE
Q 016552          350 IVVVDVKAAAAPTIFV  365 (387)
Q Consensus       350 i~~~d~~~~~~~~~W~  365 (387)
                      +.+||....   ..|.
T Consensus       286 v~lw~~~~~---g~~~  298 (316)
T 3bg1_A          286 VTLWKESVD---GQWV  298 (316)
T ss_dssp             EEEEEECTT---SCEE
T ss_pred             EEEEEECCC---CcEE
Confidence            999998733   2677

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.77  E-value=0.04  Score=49.48  Aligned_cols=186  Identities=11%  Similarity=0.012  Sum_probs=92.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.|+.+.       .+.+++........................++..++.|+.+.        .+.+||.....
T Consensus        97 dg~~l~s~~~d~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--------~~~~~d~~~~~  161 (340)
T 4aow_A           97 DGQFALSGSWDG-------TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK--------TIKLWNTLGVC  161 (340)
T ss_dssp             TSSEEEEEETTS-------EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS--------CEEEECTTSCE
T ss_pred             CCCEEEEEcccc-------cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC--------eEEEEEeCCCc
Confidence            455666666432       466777776655443222222222222223455566665543        55677776554


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYG  300 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~  300 (387)
                          -.........    .....+.+  +  +.+++.++.+..+.+||..+.+-...-....  ....++++ .++++++
T Consensus       162 ----~~~~~~~~~~----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~  231 (340)
T 4aow_A          162 ----KYTVQDESHS----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCA  231 (340)
T ss_dssp             ----EEEECSSSCS----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEE
T ss_pred             ----eEEEEecccc----CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEE
Confidence                2222111101    01112222  2  2355556666789999998876433211111  11123333 2567777


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++.++.+..||..+..-  +........-..+....+..++.++.+..|.+||+.+.
T Consensus       232 s~s~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          232 SGGKDGQAMLWDLNEGKH--LYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEETTCEEEEEETTTTEE--EEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EEeCCCeEEEEEeccCce--eeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence            777789999999977632  22222211122233334445555566777888888753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.74  E-value=0.27  Score=43.64  Aligned_cols=194  Identities=12%  Similarity=0.120  Sum_probs=101.6

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCCc-ceeEEEe---CCEEEEEecCCCCCCCCCcceEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPRR-WCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ++.+++.|+.+       ..+.+||..++  .++.+..+..... ..+.+..   ++++++.|+.+.        .+.+|
T Consensus        22 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--------~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSD-------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK--------TVKLW   86 (351)
T ss_dssp             SSSEEEEEETT-------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS--------CEEEE
T ss_pred             CCCEEEEeeCC-------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC--------eEEEE
Confidence            45566666532       25777777643  3443333322222 2222222   367777777654        67888


Q ss_pred             ECCCCccc---cCeEEcCCCCCCCccccceEEEEE--C--CEEEEEeeeCCeEEEEECCCCc----eeeccc-----ccc
Q 016552          220 DLMNGEKN---SRWEKTGELKDGRFSREAIDAVGW--K--GKLCLVNVKGAEGAVYDVVANT----WDDMRE-----GMV  283 (387)
Q Consensus       220 d~~~~~~~---~~W~~~~~~p~~~~~~~~~~~~~~--~--g~lyv~gg~~~~i~~yD~~~~~----W~~~~~-----~~~  283 (387)
                      |..+....   -.|..+..+.....   ...++.+  +  +.+.+.++.+..+.+||..+.+    |.....     ..+
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKG---SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSS---CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             ecCCCcccccccCcceeeeecccCC---ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            88765310   00333332221111   1223333  2  6666676766789999987664    221110     001


Q ss_pred             cCCC--CcEEEEe----CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCC----eEEEEecCCCeEE
Q 016552          284 RGWR--GPVAAMD----EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGG----RVCAVCENGGGIV  351 (387)
Q Consensus       284 ~~~~--~~~~~~~----~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g----~i~v~gg~~~~i~  351 (387)
                      ....  ..+++..    ++.+++.++..+.+..++........+............+.  -++    ++++.|+..+.|.
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            1111  1222222    25666777667778777777777665555544333322232  234    6888888888899


Q ss_pred             EEeccC
Q 016552          352 VVDVKA  357 (387)
Q Consensus       352 ~~d~~~  357 (387)
                      +||+.+
T Consensus       244 iwd~~~  249 (351)
T 3f3f_A          244 IFKITE  249 (351)
T ss_dssp             EEEEEE
T ss_pred             EEeCCC
Confidence            999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.14  Score=46.54  Aligned_cols=104  Identities=8%  Similarity=0.026  Sum_probs=63.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcccccc-ccC
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL-LKG  329 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~-~~~  329 (387)
                      ++.+++.++.+..+.+||+.+++-...... .......+++. .++.+++.++.++.|.+||..+..-.. ..+.. ...
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~  215 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSA-KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS-SRFPVDEEA  215 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECC-CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC-EECCCCTTS
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEec-CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc-cEEeccCCC
Confidence            566667677777899999988765332211 11111233443 366777888888999999998875330 11111 223


Q ss_pred             ceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          330 ARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       330 ~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ....+.  -+++.++.++.+ .+.+||+.+.
T Consensus       216 ~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~  245 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVECDQ-TVVCFDLRKD  245 (343)
T ss_dssp             CEEEEEECTTSSEEEEEESS-BEEEEETTSS
T ss_pred             CEEEEEEeCCCCEEEEEeCC-eEEEEEcCCC
Confidence            333333  357777776655 8999999865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.73  E-value=0.56  Score=46.80  Aligned_cols=181  Identities=8%  Similarity=-0.097  Sum_probs=110.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.||+.-.       ....++++++.....+.+....... -...++  .+++||++-..        ...++++|+..
T Consensus        48 ~~~lywtD~-------~~~~I~r~~~~g~~~~~v~~~g~~~-P~GlAvD~~~~~LY~tD~~--------~~~I~v~~~dG  111 (628)
T 4a0p_A           48 DNRIYWTDI-------SLKTISRAFMNGSALEHVVEFGLDY-PEGMAVDWLGKNLYWADTG--------TNRIEVSKLDG  111 (628)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTSCSCEEEECSSCSC-CCEEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred             CCEEEEEEC-------CCCeEEEEECCCCCcEEEEeCCCCC-cceEEEEeCCCEEEEEECC--------CCEEEEEecCC
Confidence            578898743       2246788888766555543222111 112333  46899997432        24789999865


Q ss_pred             CccccCeEEc--CCCCCCCccccceEEEE--ECCEEEEEe-eeCCeEEEEECCCCceeecccccccCCCCc-EEEEe--C
Q 016552          224 GEKNSRWEKT--GELKDGRFSREAIDAVG--WKGKLCLVN-VKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--E  295 (387)
Q Consensus       224 ~~~~~~W~~~--~~~p~~~~~~~~~~~~~--~~g~lyv~g-g~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--~  295 (387)
                      ..    =..+  ..+..|      ...++  .+|.||+.. +....|+..++....-+.+..    ....| ++++.  +
T Consensus       112 ~~----~~~l~~~~l~~P------~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~----~~~~P~GlalD~~~  177 (628)
T 4a0p_A          112 QH----RQVLVWKDLDSP------RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP----NVGRANGLTIDYAK  177 (628)
T ss_dssp             TT----CEEEECSSCCCE------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC----SCSSEEEEEEETTT
T ss_pred             Cc----EEEEEeCCCCCc------ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC----CCCCcceEEEcccc
Confidence            54    2222  222222      12222  268999986 334689999987665444332    11122 34443  6


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++||+.+...+.|.++|.++..=+.+..  ....+++++..++.||+.-..+..|..+|..++
T Consensus       178 ~~LY~aD~~~~~I~~~d~dG~~~~v~~~--~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          178 RRLYWTDLDTNLIESSNMLGLNREVIAD--DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEE--CCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CEEEEEECCCCEEEEEcCCCCceEEeec--cCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence            8999999888899999997643232222  244567788888999999777788999987644

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.72  E-value=0.14  Score=50.09  Aligned_cols=143  Identities=11%  Similarity=-0.042  Sum_probs=83.0

Q ss_pred             CEEEEEecC-CCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC
Q 016552          196 GAVYVASGI-GSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       196 ~~iyv~GG~-~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++.++.|+. +.        .+.+||..+.+    ... ..+.....   ...++.+  +|++.+.++.+..+.+||..+
T Consensus       456 ~~~l~~~~~~d~--------~i~~~~~~~~~----~~~-~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  519 (615)
T 1pgu_A          456 QNYVAVGLEEGN--------TIQVFKLSDLE----VSF-DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQS  519 (615)
T ss_dssp             SSEEEEEETTTS--------CEEEEETTEEE----EEE-ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEeecCCC--------eEEEEECCCcc----ccc-cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence            555566554 33        67889998877    542 21111111   1233333  778777777777899999987


Q ss_pred             CceeecccccccCCCCcEEEE-e----------CCeEEEEeCCCCeEEEEeCCCCceeEccccccccC--ceEEEEeCCe
Q 016552          273 NTWDDMREGMVRGWRGPVAAM-D----------EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG--ARHAAAGGGR  339 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~----------~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~--~~~~~~~~g~  339 (387)
                      .+-...-... ......+++. .          ++++++.++.++.|.+||.++.. ..+..+.....  .......+++
T Consensus       520 ~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          520 REVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             TEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTE
T ss_pred             CcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCC
Confidence            6543221100 1111223333 2          56777777778899999998762 11222222222  2334456788


Q ss_pred             EEEEecCCCeEEEEeccC
Q 016552          340 VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       340 i~v~gg~~~~i~~~d~~~  357 (387)
                       ++.++..+.+.+||++.
T Consensus       598 -l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          598 -LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             -EEEEETTSCEEEEEEC-
T ss_pred             -eEEecCCceEEEEeeec
Confidence             77777788899999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.72  E-value=0.1  Score=47.65  Aligned_cols=181  Identities=12%  Similarity=0.095  Sum_probs=89.3

Q ss_pred             cEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEE--CCCCccccCeEEcCCCCCCCcc
Q 016552          166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWD--LMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd--~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ++.+|+.+++.+.+...........+..-++ .||+.+..+.     ....+.+|+  ..+++    ...+...+.....
T Consensus        31 ~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~-----~~~~v~~~~~~~~~g~----~~~~~~~~~~~~~  101 (361)
T 3scy_A           31 TFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSK-----DQAAVSAFAFDKEKGT----LHLLNTQKTMGAD  101 (361)
T ss_dssp             EEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSS-----TTCEEEEEEEETTTTE----EEEEEEEECSSSC
T ss_pred             EEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCC-----CCCcEEEEEEeCCCCc----EEEeeEeccCCCC
Confidence            4556788888877654422222222223344 5777654321     113555554  44466    6665533321111


Q ss_pred             ccceEEEEECCE-EEEEeeeCCeEEEEECCCC-ceeeccccc---ccC----C----CCcEEEEe-CC-eEEEEeCCCCe
Q 016552          243 REAIDAVGWKGK-LCLVNVKGAEGAVYDVVAN-TWDDMREGM---VRG----W----RGPVAAMD-EE-VLYGIDENSCT  307 (387)
Q Consensus       243 ~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~-~W~~~~~~~---~~~----~----~~~~~~~~-~~-~ly~~~~~~~~  307 (387)
                        .+..+. +|+ +|+.+..+..+.+||..++ ....+....   ..+    +    ....+++. +| .||+.+...+.
T Consensus       102 --p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  178 (361)
T 3scy_A          102 --PCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ  178 (361)
T ss_dssp             --EEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             --cEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence              122233 666 6655544478999998754 222221100   000    0    01224432 44 58887766778


Q ss_pred             EEEEeCCCCc-------eeEc-----cccccccCc-eEEEEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          308 LSRYDEVMDD-------WKEV-----VKSDLLKGA-RHAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       308 l~~yd~~~~~-------W~~v-----~~~~~~~~~-~~~~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.+|+.+.+.       ....     ...+..... ..+..-+|+ +|+.+..++.+.+||+.+.
T Consensus       179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            8888776544       2211     111111122 323344565 6666556788999998744

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.66  E-value=0.48  Score=46.83  Aligned_cols=117  Identities=16%  Similarity=0.119  Sum_probs=69.0

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCCC------cceeEEEeCCEEEEEecCCCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTPR------RWCAAGCSRGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~  212 (387)
                      ..++.++.||+....        ..++.+|..|.  .|+.-...+...      .....++.+++||+...         
T Consensus        63 ~P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~---------  125 (582)
T 1flg_A           63 QAIVSDGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL---------  125 (582)
T ss_dssp             CCEEETTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---------
T ss_pred             ccEEECCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---------
Confidence            345678999997652        23889999876  588743322110      11234567889988532         


Q ss_pred             cceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC------EEEEEee-----eCCeEEEEECCCC--ceee
Q 016552          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG------KLCLVNV-----KGAEGAVYDVVAN--TWDD  277 (387)
Q Consensus       213 ~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g------~lyv~gg-----~~~~i~~yD~~~~--~W~~  277 (387)
                      -..+.++|..+++..  |+.-..-+...+... ..-++.++      .+|+-..     ....+.+||++++  .|+.
T Consensus       126 dg~l~AlD~~TG~~~--W~~~~~~~~~~~~~~-~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          126 DASVVALNKNTGKVV--WKKKFADHGAGYTMT-GAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             TTEEEEEESSSCCEE--EEEECSCGGGTCBCC-SCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEECCCCCEE--eeecCCCCCcCcccc-cCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            136789999998866  885432211111101 12234566      7776432     1357999999877  4864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.63  E-value=0.27  Score=44.30  Aligned_cols=183  Identities=8%  Similarity=-0.007  Sum_probs=96.0

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      +.+++.|+.+       ..+.+||..+........+..... ....+ .-+++.++.|+.+.        .+.+||..+.
T Consensus        54 g~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~~  118 (368)
T 3mmy_A           54 GNFLIAGSWA-------NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK--------TAKMWDLSSN  118 (368)
T ss_dssp             SEEEEEEETT-------SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTT
T ss_pred             ceEEEEECCC-------CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC--------cEEEEEcCCC
Confidence            3677777643       257888888733322111111111 11122 22566666766544        7899999988


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEE----ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEE
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVG----WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~----~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~  300 (387)
                      +    -.........      ..++.    -++.+++.++.+..+.+||..+++-...   ........+.......+ +
T Consensus       119 ~----~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~-~  184 (368)
T 3mmy_A          119 Q----AIQIAQHDAP------VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV---LQLPERCYCADVIYPMA-V  184 (368)
T ss_dssp             E----EEEEEECSSC------EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE---EECSSCEEEEEEETTEE-E
T ss_pred             C----ceeeccccCc------eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE---EecCCCceEEEecCCee-E
Confidence            8    5554322211      22232    3667777777777899999887642211   11111122333445444 4


Q ss_pred             EeCCCCeEEEEeCCCCc--eeEccccccccCceEEEEeCC----eEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDD--WKEVVKSDLLKGARHAAAGGG----RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~--W~~v~~~~~~~~~~~~~~~~g----~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++...+.+..||.+...  +..+...............+.    ..+++|+.+..+.+||+...
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence            44456789999987653  333322111111222222222    23677777888899988754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.61  E-value=0.37  Score=43.64  Aligned_cols=141  Identities=9%  Similarity=0.044  Sum_probs=76.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeE-EcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWE-KTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ++.+.+.|+.+.        .+.+||..+.+    -. .+......      ..++.  -+++..+.++.+..+.++|..
T Consensus        87 ~~~~l~s~s~D~--------~v~lwd~~~~~----~~~~~~~h~~~------v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           87 ENCFAISSSWDK--------TLRLWDLRTGT----TYKRFVGHQSE------VYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             STTEEEEEETTS--------EEEEEETTSSC----EEEEEECCCSC------EEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             CCCEEEEEcCCC--------cEEEEECCCCc----EEEEEcCCCCc------EEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            456667776644        78899998876    33 22211111      22222  256666677777789999987


Q ss_pred             CCceeecccccccCCCCcEEEEe-C----------CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE--EeCC
Q 016552          272 ANTWDDMREGMVRGWRGPVAAMD-E----------EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA--AGGG  338 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~-~----------~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~g  338 (387)
                      ...-..............+++.. +          +.+++.++.++.|.+||....   ..............+  ..+|
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EEEEEECCSSCEEEEEECTTS
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc---eeEEEcCccccceEEEECCCC
Confidence            44322221100000001122221 1          145666667889999995432   222222222222223  3467


Q ss_pred             eEEEEecCCCeEEEEecc
Q 016552          339 RVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       339 ~i~v~gg~~~~i~~~d~~  356 (387)
                      +.++.|+....|.+||+.
T Consensus       226 ~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          226 KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             SEEEEEETTCEEEEEESS
T ss_pred             CEEEEEcCCCeEEEEECC
Confidence            888888888899999984

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.58  E-value=0.00073  Score=60.04  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=34.2

Q ss_pred             CCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        43 ~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f   79 (387)
                      |..||+||+..||+.|+   ++++..|||+|+.+..++..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~L   44 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPIL   44 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchH
Confidence            55799999999999998   99999999999999999854

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.33  Score=43.90  Aligned_cols=180  Identities=9%  Similarity=0.043  Sum_probs=90.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++..++.|+.+       ..+.+||..+.+-.......... ....+..-++++++.|+.+.        .+.+||..+.
T Consensus       138 ~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg--------~i~iwd~~~~  202 (343)
T 3lrv_A          138 NTEYFIWADNR-------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG--------ILDVYNLSSP  202 (343)
T ss_dssp             -CCEEEEEETT-------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS--------CEEEEESSCT
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC--------EEEEEECCCC
Confidence            45566666643       25789999887654332222221 12222233677778777654        7899999887


Q ss_pred             ccccCeE--EcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCC--CcEEEEe-CC
Q 016552          225 EKNSRWE--KTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWR--GPVAAMD-EE  296 (387)
Q Consensus       225 ~~~~~W~--~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~--~~~~~~~-~~  296 (387)
                      +    -.  .+..-..     ....++.+  +|...+.++.+ .+.+||+.+.+-. .+.........  ..+++.. ++
T Consensus       203 ~----~~~~~~~~~h~-----~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          203 D----QASSRFPVDEE-----AKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             T----SCCEECCCCTT-----SCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             C----CCccEEeccCC-----CCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence            7    32  2221001     11223333  56666666644 8999999876421 11110000011  1124433 45


Q ss_pred             eEEEEeCC-CCeEEEEeC--CCCceeE----cccccc---ccCceEEEEeCCeEEEEecCCCeE
Q 016552          297 VLYGIDEN-SCTLSRYDE--VMDDWKE----VVKSDL---LKGARHAAAGGGRVCAVCENGGGI  350 (387)
Q Consensus       297 ~ly~~~~~-~~~l~~yd~--~~~~W~~----v~~~~~---~~~~~~~~~~~g~i~v~gg~~~~i  350 (387)
                      +.++.++. ++.+.+|+.  ....|..    .....+   ......++..++.+.++-..+...
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  336 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSF  336 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECSSEE
T ss_pred             CEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecCCeE
Confidence            55555433 667777766  5567987    112222   112344556677777665444333

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.55  E-value=0.21  Score=51.11  Aligned_cols=212  Identities=10%  Similarity=0.055  Sum_probs=115.2

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeC
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l  179 (387)
                      .++.||+.++++..+...... .             ..-.+++.. ++.|++. ..        ..+++||+.+++|...
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~-~-------------~~v~~i~~d~~g~lwig-t~--------~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNE-L-------------LDVRVFYEDKNKKIWIG-TH--------AGVFVIDLASKKVIHH  484 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTC-C-------------CCEEEEEECTTSEEEEE-ET--------TEEEEEESSSSSCCEE
T ss_pred             CEEEEcCCCCcEEEeccCCCC-C-------------CeEEEEEECCCCCEEEE-EC--------CceEEEeCCCCeEEec
Confidence            466788887777766432110 0             000223332 3566653 31        2489999999988765


Q ss_pred             CCCC-----CCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--C
Q 016552          180 PELV-----TPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--K  252 (387)
Q Consensus       180 ~~~p-----~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~  252 (387)
                      ....     ...........+++|++... .        .-+..||+.+++    +..... +.. .......++..  +
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~--------~Gl~~~~~~~~~----~~~~~~-~~~-l~~~~i~~i~~d~~  549 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGTF-G--------GGVGIYTPDMQL----VRKFNQ-YEG-FCSNTINQIYRSSK  549 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEES-S--------SCEEEECTTCCE----EEEECT-TTT-CSCSCEEEEEECTT
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEEc-C--------CCEEEEeCCCCe----EEEccC-CCC-CCCCeeEEEEECCC
Confidence            4322     11111112223567887532 1        135779998888    877653 111 11111223333  5


Q ss_pred             CEEEEEeeeCCeE-EEEECCCCceeeccc--ccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552          253 GKLCLVNVKGAEG-AVYDVVANTWDDMRE--GMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       253 g~lyv~gg~~~~i-~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~  328 (387)
                      |.|++...  ..+ ..||++++++.....  +++... ..+++.. +|.|++-+  ...|..||+++.+++.......+.
T Consensus       550 g~lWi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~dGl~  624 (781)
T 3v9f_A          550 GQMWLATG--EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWAST--NTGISCYITSKKCFYTYDHSNNIP  624 (781)
T ss_dssp             SCEEEEET--TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEEC--SSCEEEEETTTTEEEEECGGGTCC
T ss_pred             CCEEEEEC--CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEc--CCceEEEECCCCceEEecccCCcc
Confidence            78887654  346 899999998876542  222221 2334433 57788764  345999999999887765432222


Q ss_pred             C-----ceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          329 G-----ARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~-----~~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      .     ...+..-+|.|++-+.  .++..||++.
T Consensus       625 ~~~f~~~~~~~~~~G~l~~g~~--~Gl~~f~p~~  656 (781)
T 3v9f_A          625 QGSFISGCVTKDHNGLIYFGSI--NGLCFFNPDI  656 (781)
T ss_dssp             SSCEEEEEEEECTTSCEEEEET--TEEEEECSCC
T ss_pred             ccccccCceEECCCCEEEEECC--CceEEEChhh
Confidence            1     1222223567666432  3578888774

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.54  E-value=0.2  Score=49.38  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC-CCCccccCeEEcCCCCCCCcc-----ccceEEEEECCEEEEEeeeC
Q 016552          189 CAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL-MNGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKG  262 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~-~~~~~~~~W~~~~~~p~~~~~-----~~~~~~~~~~g~lyv~gg~~  262 (387)
                      ...++.+++||+....+        ..+.++|. .+++..  |+.-...+.....     ......++.+++||+.... 
T Consensus        56 ~~P~v~~g~vyv~~~~~--------~~v~AlD~~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-  124 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAFP--------NNTYALNLNDPGKIV--WQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN-  124 (571)
T ss_dssp             SCCEEETTEEEEECSTT--------TCEEEEETTCTTSEE--EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-
T ss_pred             cccEEECCEEEEEeCCC--------CEEEEEeCCCCccEE--EEEcCCCCccccccccccccccccEEECCEEEEEeCC-
Confidence            34456799999985421        26788999 888866  9875433211100     0011235679999987543 


Q ss_pred             CeEEEEECCCC--ceeecccccccCCC-CcEEEEeCCeEEEEeCC-----CCeEEEEeCCCC--ceeEc
Q 016552          263 AEGAVYDVVAN--TWDDMREGMVRGWR-GPVAAMDEEVLYGIDEN-----SCTLSRYDEVMD--DWKEV  321 (387)
Q Consensus       263 ~~i~~yD~~~~--~W~~~~~~~~~~~~-~~~~~~~~~~ly~~~~~-----~~~l~~yd~~~~--~W~~v  321 (387)
                      ..+.++|.+++  .|+.-......+.. ..+.++.++.+|+-...     .+.|++||.+++  .|+.-
T Consensus       125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            47999999887  58753221111111 12334568888876532     578999999876  47653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.53  E-value=0.2  Score=48.95  Aligned_cols=146  Identities=9%  Similarity=0.001  Sum_probs=81.5

Q ss_pred             EEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--C-CEEEEEeeeCCeEEEEECCCCc
Q 016552          198 VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--K-GKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       198 iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~-g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      +++.|+.+.        .+.+||..+.+    -...  +...........++.+  + +++.+.++.+..+.+||..+++
T Consensus       175 ~l~~~~~d~--------~v~vwd~~~~~----~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          175 RSMTVGDDG--------SVVFYQGPPFK----FSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             EEEEEETTT--------EEEEEETTTBE----EEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEEeCCC--------cEEEEeCCCcc----eeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            666666544        78889977665    3221  1111010001222322  4 6777777766789999998775


Q ss_pred             eeecc-cc-cccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEcccccc--c-cCceEEEEeCCeEEEEecCCCe
Q 016552          275 WDDMR-EG-MVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL--L-KGARHAAAGGGRVCAVCENGGG  349 (387)
Q Consensus       275 W~~~~-~~-~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~--~-~~~~~~~~~~g~i~v~gg~~~~  349 (387)
                      -...- .. ........+++..++.+++.++.++.+..||.++.+-......+.  . .....+...++..++.|+.++.
T Consensus       241 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  320 (615)
T 1pgu_A          241 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT  320 (615)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred             EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence            43221 10 011111223333366677777778899999998775443322221  1 1122233337778888888888


Q ss_pred             EEEEeccC
Q 016552          350 IVVVDVKA  357 (387)
Q Consensus       350 i~~~d~~~  357 (387)
                      +.+||+.+
T Consensus       321 i~~~d~~~  328 (615)
T 1pgu_A          321 LNFYELGH  328 (615)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCC
Confidence            99999884

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.50  E-value=0.48  Score=48.54  Aligned_cols=170  Identities=8%  Similarity=0.003  Sum_probs=97.1

Q ss_pred             ccEEEeccCCceeeCCCC----CCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC--C
Q 016552          165 RPLIFDPICRTWTFGPEL----VTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL--K  237 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~----p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~--p  237 (387)
                      .+++||+.+++++.....    +... ..+... -++.|++...          .-+.+||+.+++    |......  +
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~-v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~----~~~~~~~~~~  492 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNEN-VYAILPDGEGNLWLGTL----------SALVRFNPEQRS----FTTIEKEKDG  492 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSC-EEEEEECSSSCEEEEES----------SCEEEEETTTTE----EEECCBCTTC
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCe-eEEEEECCCCCEEEEec----------CceeEEeCCCCe----EEEccccccc
Confidence            479999999988776431    1111 112222 2567877532          146789999998    8877533  1


Q ss_pred             CCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccc-----ccccCCCCcEEEE-eCCeEEEEeCCCCeEE
Q 016552          238 DGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMRE-----GMVRGWRGPVAAM-DEEVLYGIDENSCTLS  309 (387)
Q Consensus       238 ~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-----~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~  309 (387)
                      .. .......+...  +|.|++...  ..+..||+.++++ ....     .++.. ...+++. .+|.|++-..  +.|.
T Consensus       493 ~~-~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT~--~Gl~  565 (795)
T 4a2l_A          493 TP-VVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGTR--EGFY  565 (795)
T ss_dssp             CB-CCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEES--SCEE
T ss_pred             cc-cCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEeC--CCce
Confidence            11 11011223333  577887654  3689999998887 3321     11111 1122333 3567877643  3799


Q ss_pred             EEeCCCCceeEccccccccC-ce-EEEE-eCCeEEEEecCCCeEEEEeccCC
Q 016552          310 RYDEVMDDWKEVVKSDLLKG-AR-HAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       310 ~yd~~~~~W~~v~~~~~~~~-~~-~~~~-~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .||+++++++.......+.. .. +++. -+|.|++.+  ..++..||+.+.
T Consensus       566 ~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          566 CFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             EEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred             eECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCC
Confidence            99999998887654332222 12 2222 257788775  356778887755

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.48  E-value=0.37  Score=51.93  Aligned_cols=144  Identities=13%  Similarity=0.141  Sum_probs=77.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc--ceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR--WCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++..++.|+.+       ..+.+||..+.+-..  .+.....  ...+..-+++..+.|+.+.        .+.+||..+
T Consensus       626 ~~~~l~s~~~d-------~~i~vw~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d~--------~v~vwd~~~  688 (1249)
T 3sfz_A          626 DGQRIASCGAD-------KTLQVFKAETGEKLL--DIKAHEDEVLCCAFSSDDSYIATCSADK--------KVKIWDSAT  688 (1249)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTT
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCCEEE--EeccCCCCEEEEEEecCCCEEEEEeCCC--------eEEEEECCC
Confidence            56667777643       258899998875432  1111111  1112223567777776544        789999988


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE----CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW----KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~----~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l  298 (387)
                      ++    -...-.-....     ..++.+    ++.+.+.++.+..+.+||..++.-...-.....  ...++++ .++.+
T Consensus       689 ~~----~~~~~~~~~~~-----v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~  757 (1249)
T 3sfz_A          689 GK----LVHTYDEHSEQ-----VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN--SVNHCRFSPDDEL  757 (1249)
T ss_dssp             CC----EEEEEECCSSC-----EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS--CEEEEEECSSTTE
T ss_pred             Cc----eEEEEcCCCCc-----EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC--CEEEEEEecCCCE
Confidence            87    43322111111     222332    334555566667899999988764322110111  1112222 24556


Q ss_pred             EEEeCCCCeEEEEeCCCCc
Q 016552          299 YGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~  317 (387)
                      ++.++.++.+..||..+..
T Consensus       758 l~s~s~dg~v~vwd~~~~~  776 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSAN  776 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTE
T ss_pred             EEEEECCCeEEEEeCCCCc
Confidence            6666667888888887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.47  E-value=0.3  Score=42.29  Aligned_cols=219  Identities=11%  Similarity=-0.014  Sum_probs=106.9

Q ss_pred             CCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEE-EECCEEEEEecccCCCCCCCCccEEEeccC-Cc
Q 016552           98 TPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLV-SLSGKLILLAATTHNFNPALTRPLIFDPIC-RT  175 (387)
Q Consensus        98 ~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t-~~  175 (387)
                      ....++++|..++....+......  .               ..+. ..+++.+++++ .       ..++++|..+ .+
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~--v---------------~~~~~spdg~~l~~~~-~-------~~i~~~d~~~~~~   74 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPEL--F---------------EAPNWSPDGKYLLLNS-E-------GLLYRLSLAGDPS   74 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSC--C---------------EEEEECTTSSEEEEEE-T-------TEEEEEESSSCCS
T ss_pred             cceeEEEEeCCCCceeeeccCCcc--e---------------EeeEECCCCCEEEEEc-C-------CeEEEEeCCCCCC
Confidence            344688889887765543322210  0               1222 23455555544 1       3689999999 87


Q ss_pred             eeeCCCCCCCC-cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE
Q 016552          176 WTFGPELVTPR-RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK  254 (387)
Q Consensus       176 W~~l~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~  254 (387)
                      ...+....... .......-+++.+++++...    .....++.+|..+..    -..+.....   .  ......-+|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~~~~~l~~~~~~~~~----~~~~~~~~~---~--~~~~~spdg~  141 (297)
T 2ojh_A           75 PEKVDTGFATICNNDHGISPDGALYAISDKVE----FGKSAIYLLPSTGGT----PRLMTKNLP---S--YWHGWSPDGK  141 (297)
T ss_dssp             CEECCCTTCCCBCSCCEECTTSSEEEEEECTT----TSSCEEEEEETTCCC----CEECCSSSS---E--EEEEECTTSS
T ss_pred             ceEeccccccccccceEECCCCCEEEEEEeCC----CCcceEEEEECCCCc----eEEeecCCC---c--cceEECCCCC
Confidence            77665433212 12222233555555554322    123477888887777    555543221   0  0111222555


Q ss_pred             -EEEEeeeCC--eEEEEECCCCceeecccccccCCCCcEEEE-eCCe-EEEEeCCCC--eEEEEeCCCCceeEccccccc
Q 016552          255 -LCLVNVKGA--EGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV-LYGIDENSC--TLSRYDEVMDDWKEVVKSDLL  327 (387)
Q Consensus       255 -lyv~gg~~~--~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~-ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~  327 (387)
                       |++.+....  .++.+|..+.....+... ..  ....++. .+++ |++.....+  .++.++..+.....+......
T Consensus       142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~--~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  218 (297)
T 2ojh_A          142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHG-EG--RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG  218 (297)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCS-SS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE
T ss_pred             EEEEEECCCCceEEEEEECCCCcceEcccC-CC--ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc
Confidence             444444443  455566777666554431 11  1122232 2444 555543333  567777666666555432211


Q ss_pred             cCceEEEEeCCeEEEEecC-C----------CeEEEEeccCC
Q 016552          328 KGARHAAAGGGRVCAVCEN-G----------GGIVVVDVKAA  358 (387)
Q Consensus       328 ~~~~~~~~~~g~i~v~gg~-~----------~~i~~~d~~~~  358 (387)
                       ........+|+.+++++. +          ..++++|..+.
T Consensus       219 -~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          219 -DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             -EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             -cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence             111122345655444432 1          45888888765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.45  E-value=0.58  Score=43.63  Aligned_cols=185  Identities=5%  Similarity=-0.019  Sum_probs=93.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..++.|+.++       .+.+||..+++-...  +........+...++.+.+.|+.+.        .+..+|..+..
T Consensus       158 dg~~lasgs~Dg-------~v~iWd~~~~~~~~~--~~~h~~~v~~~s~~~~~l~sgs~d~--------~i~~~d~~~~~  220 (420)
T 4gga_A          158 EGNYLAVGTSSA-------EVQLWDVQQQKRLRN--MTSHSARVGSLSWNSYILSSGSRSG--------HIHHHDVRVAE  220 (420)
T ss_dssp             TSSEEEEEETTS-------CEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETTS--------EEEEEETTSSS
T ss_pred             CCCEEEEEECCC-------eEEEEEcCCCcEEEE--EeCCCCceEEEeeCCCEEEEEeCCC--------ceeEeeecccc
Confidence            466777776433       588999988754332  2222222334455677777777654        66777776654


Q ss_pred             cccCeEE--cCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCce--eecccccccCCCCc--EEEEe--CCe
Q 016552          226 KNSRWEK--TGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTW--DDMREGMVRGWRGP--VAAMD--EEV  297 (387)
Q Consensus       226 ~~~~W~~--~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W--~~~~~~~~~~~~~~--~~~~~--~~~  297 (387)
                          ...  +...... .   .......+|...+.++.++.+.++|..+++=  ..+..  .....+.  +++.+  ++.
T Consensus       221 ----~~~~~~~~h~~~-~---~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~~~p~~~~  290 (420)
T 4gga_A          221 ----HHVATLSGHSQE-V---CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVAWCPWQSN  290 (420)
T ss_dssp             ----CEEEEEECCSSC-E---EEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE--ECCCSSCEEEEEECTTCTT
T ss_pred             ----eeeEEecccccc-e---eeeeecCCCCeeeeeeccccceEEeeccccccceeeee--ecccCCceeeeeeCCCccc
Confidence                221  1111111 0   0112223566666666667888888876532  11111  1111111  22222  344


Q ss_pred             EEEE-eC-CCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEE-ec-CCCeEEEEeccCC
Q 016552          298 LYGI-DE-NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAV-CE-NGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~-~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~-gg-~~~~i~~~d~~~~  358 (387)
                      +++. ++ .++.|..||..++.-........ .....+...+++.+++ +| ..+.|.+||..+.
T Consensus       291 ~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          291 VLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             EEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             EEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            5444 33 45789999998875433222111 1112223334444444 34 3577999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.44  E-value=0.098  Score=52.74  Aligned_cols=186  Identities=11%  Similarity=0.075  Sum_probs=94.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..+..-...  +.... ...+.+ ..+++.++.|+.+.        .+.+||...
T Consensus       441 ~g~~l~sgs~D-------g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~--------~i~iwd~~~  503 (694)
T 3dm0_A          441 DGQFALSGSWD-------GELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRDR--------TIKLWNTLG  503 (694)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETTS--------CEEEECTTS
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCCC--------EEEEEECCC
Confidence            45666666643       3678899887653321  11111 111122 23556667776644        677888755


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--CC--EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--KG--KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVL  298 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g--~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l  298 (387)
                      ..    =..+.......  .....++.+  ++  .+.+.++.+..+.+||+.+.+-...-...  .....++++ .++++
T Consensus       504 ~~----~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          504 EC----KYTISEGGEGH--RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSL  575 (694)
T ss_dssp             CE----EEEECSSTTSC--SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             Cc----ceeeccCCCCC--CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCE
Confidence            43    22221111111  111223333  22  34555666678999999876533211100  111123333 25677


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.++.++.|.+||..+..-  +........-.++....+..+++++....|.+||+.+.
T Consensus       576 l~sg~~Dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~  633 (694)
T 3dm0_A          576 CASGGKDGVVLLWDLAEGKK--LYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK  633 (694)
T ss_dssp             EEEEETTSBCEEEETTTTEE--EECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCCce--EEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC
Confidence            77777789999999987742  22222211122233333333444455566999998854

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.44  E-value=0.61  Score=43.73  Aligned_cols=177  Identities=11%  Similarity=0.018  Sum_probs=95.8

Q ss_pred             ccEEEeccCCce-eeCCCC---CCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552          165 RPLIFDPICRTW-TFGPEL---VTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       165 ~~~vyd~~t~~W-~~l~~~---p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~  239 (387)
                      .++++|+.++.- ..+...   ...+....+..- ++.||+...         ...+..||+.+..    -..+...+..
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---------~~~I~~~d~~~~~----~~~~~~~~~~  261 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---------NKNFGRFNVKTQE----VTLIKQLELS  261 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---------TCEEEEEETTTCC----EEEEEECCCC
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---------CCcEEEEECCCCC----EEEEeccccc
Confidence            688999876532 233111   111112222222 679999421         1378899998876    5544211110


Q ss_pred             Cccccc-e-EEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccccc-ccC----------CCCc-EEEEe-CCeEEEEe
Q 016552          240 RFSREA-I-DAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGM-VRG----------WRGP-VAAMD-EEVLYGID  302 (387)
Q Consensus       240 ~~~~~~-~-~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~-~~~----------~~~~-~~~~~-~~~ly~~~  302 (387)
                      ...... . ..++-  ++.||+.......+.+||+... ...+.... ..+          ...+ .+++. +|.||+.+
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            000011 1 23333  5899998766678999998754 22221100 000          1122 33333 56799999


Q ss_pred             C-CCCeEEEEeCCCCceeEccccc-------------cccCceEEEE-eCCeEEEEecCCCeEEEEec
Q 016552          303 E-NSCTLSRYDEVMDDWKEVVKSD-------------LLKGARHAAA-GGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       303 ~-~~~~l~~yd~~~~~W~~v~~~~-------------~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~  355 (387)
                      . ....|.+||+.++.-..+...+             ....+..++. -+|.|||.-..+..|..+++
T Consensus       341 ~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          341 GFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7 7889999997666555443221             0122343443 34889988777788877765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.39  E-value=0.34  Score=43.44  Aligned_cols=180  Identities=7%  Similarity=-0.011  Sum_probs=89.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCc-ceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRR-WCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++..++.|+.+       ..+.+||..+++-..  .+..... ..+.+ .-++.+++.|+.+.        .+.+||...
T Consensus        76 dg~~l~s~s~D-------~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~--------~i~vwd~~~  138 (319)
T 3frx_A           76 DGAYALSASWD-------KTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSRDK--------TIKVWTIKG  138 (319)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEETTS--------CEEEEETTS
T ss_pred             CCCEEEEEeCC-------CEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCC
Confidence            45566666643       367889998875322  1111111 11111 22566777777654        678888865


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--------CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-e
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--------KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-D  294 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--------~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~  294 (387)
                      ..    -..+......      ...+.+        ++.+.+.++.+..+..+|+.+.+-...-.  .......+++. .
T Consensus       139 ~~----~~~~~~h~~~------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~sp  206 (319)
T 3frx_A          139 QC----LATLLGHNDW------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI--GHNSNINTLTASP  206 (319)
T ss_dssp             CE----EEEECCCSSC------EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC--CCCSCEEEEEECT
T ss_pred             Ce----EEEEeccCCc------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec--CCCCcEEEEEEcC
Confidence            54    3333211110      111111        33355566666789999988754322111  00111122333 3


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEE-EEeCCeEEEEecCCCeEEEEeccC
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ++++++.++.++.|..||..+.+=.  ........-..+ ...++.+++. +....+.+|+...
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~la~-~~~~~i~v~~~~~  267 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAA-ATATGIKVFSLDP  267 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEE--EEEECCSCEEEEEECSSSSEEEE-EETTEEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEE--EEecCCCcEEEEEEcCCCCEEEE-EcCCCcEEEEeCc
Confidence            5677777777899999999876422  221111111222 2234555444 3345577776653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.39  E-value=0.29  Score=49.20  Aligned_cols=143  Identities=11%  Similarity=0.134  Sum_probs=81.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-CCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-GELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ++++.+.|+.+.        .+.+||..+..    -... ......      ..++.  .+++..+.++.+..+.++|..
T Consensus       441 ~g~~l~sgs~Dg--------~v~vwd~~~~~----~~~~~~~h~~~------v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          441 DGQFALSGSWDG--------ELRLWDLAAGV----STRRFVGHTKD------VLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             TSSEEEEEETTS--------EEEEEETTTTE----EEEEEECCSSC------EEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCEEEEEeCCC--------cEEEEECCCCc----ceeEEeCCCCC------EEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            567777777654        78999998876    2221 111111      22222  356666666766789999976


Q ss_pred             CCceeecccccccCCC--CcEEEEe-CC--eEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE--EeCCeEEEEe
Q 016552          272 ANTWDDMREGMVRGWR--GPVAAMD-EE--VLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA--AGGGRVCAVC  344 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~--~~~~~~~-~~--~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~--~~~g~i~v~g  344 (387)
                      ...=..+.. ...+..  ..+++.. ++  .+++.++.++.|.+||..+..-..  .+.........+  ..++++++.|
T Consensus       503 ~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~--~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          503 GECKYTISE-GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS--TLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             SCEEEEECS-STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCcceeecc-CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE--EEcCCCCCEEEEEEeCCCCEEEEE
Confidence            543222211 111111  1233332 22  355666678899999998764332  222223332223  3467888888


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      +....|.+||+.+.
T Consensus       580 ~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          580 GKDGVVLLWDLAEG  593 (694)
T ss_dssp             ETTSBCEEEETTTT
T ss_pred             eCCCeEEEEECCCC
Confidence            88888999999854

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.38  E-value=0.1  Score=46.54  Aligned_cols=138  Identities=17%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             CccEEEeccCCceeeCCCCCCC--CcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          164 TRPLIFDPICRTWTFGPELVTP--RRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~--r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      ..+.++|+.+.+-...-.++..  +....+..-++ .+|+.+..+        ..+.+||..+.+    -...-..+...
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~--------~~v~~~d~~~~~----~~~~~~~~~~~   78 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS--------ESLVKIDLVTGE----TLGRIDLSTPE   78 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT--------TEEEEEETTTCC----EEEEEECCBTT
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC--------CeEEEEECCCCC----eEeeEEcCCcc
Confidence            3688899888765442222221  11222222344 678876432        378999998877    43221121100


Q ss_pred             --ccccceEEEEECC-EEEEEee-----------eCCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-eEEEEeCC
Q 016552          241 --FSREAIDAVGWKG-KLCLVNV-----------KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDEN  304 (387)
Q Consensus       241 --~~~~~~~~~~~~g-~lyv~gg-----------~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~ly~~~~~  304 (387)
                        .......+..-+| .+|+...           ....+.+||+.+.+....-.   .+.....+++. ++ .||+.   
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~---  152 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---APRQITMLAWARDGSKLYGL---  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---CCSSCCCEEECTTSSCEEEE---
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe---CCCCcceeEECCCCCEEEEe---
Confidence              0000011222355 5776641           13689999998876432211   11111223332 34 46665   


Q ss_pred             CCeEEEEeCCCCcee
Q 016552          305 SCTLSRYDEVMDDWK  319 (387)
Q Consensus       305 ~~~l~~yd~~~~~W~  319 (387)
                      ++.+++||.++.+-.
T Consensus       153 ~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          153 GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             SSSEEEEETTTTEEE
T ss_pred             CCeEEEEECCCCcEe
Confidence            468999999887543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.38  E-value=0.62  Score=47.74  Aligned_cols=171  Identities=10%  Similarity=0.061  Sum_probs=95.8

Q ss_pred             ccEEEeccCCceeeCCCC------CCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC-C
Q 016552          165 RPLIFDPICRTWTFGPEL------VTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL-K  237 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~-p  237 (387)
                      .+++||+.+++|+.....      +...........+++||+...  .        -+..||+.+++    + ..... .
T Consensus       472 Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~--------Gl~~~~~~~~~----~-~~~~~~~  536 (795)
T 4a2l_A          472 ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E--------GLSVFKQEGLD----I-QKASILP  536 (795)
T ss_dssp             CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S--------CEEEEEEETTE----E-EECCCSC
T ss_pred             ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--C--------ceEEEeCCCCe----E-EEecCCC
Confidence            489999999999887543      111111112223567887542  1        35778988888    7 43211 1


Q ss_pred             CCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccc--ccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEe
Q 016552          238 DGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYD  312 (387)
Q Consensus       238 ~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd  312 (387)
                      ..........++..  +|.|++....  .+..||+.++++.....  +++.. ...+++.. +|.|++-+  ...|..||
T Consensus       537 ~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~gl~~~-~i~~i~~d~~g~lWi~t--~~Gl~~~~  611 (795)
T 4a2l_A          537 VSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNGLPNN-VVYGILEDSFGRLWLST--NRGISCFN  611 (795)
T ss_dssp             SCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTEEEEECGGGTCSCS-CEEEEEECTTSCEEEEE--TTEEEEEE
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCcEEEeCCCCCCchh-heEEEEECCCCCEEEEc--CCceEEEc
Confidence            11011111233333  5788875432  68999999998876542  22221 11233332 56788775  45799999


Q ss_pred             CCCCceeEccccccccC-c---eEEE-EeCCeEEEEecCCCeEEEEeccC
Q 016552          313 EVMDDWKEVVKSDLLKG-A---RHAA-AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~~~-~---~~~~-~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++++++.......+.. .   .++. .-+|.|++-+.  .++..||++.
T Consensus       612 ~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~~~p~~  659 (795)
T 4a2l_A          612 PETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI--NGITTFRPEL  659 (795)
T ss_dssp             TTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET--TEEEEECGGG
T ss_pred             CCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC--CceEEEcHHH
Confidence            99998887654322221 1   1222 33566666432  3577777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.33  E-value=0.25  Score=50.64  Aligned_cols=174  Identities=9%  Similarity=0.045  Sum_probs=98.4

Q ss_pred             ccEEEeccCCceeeCCCCC-CCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELV-TPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .+++||+.+++++...... ......+.+.. +++||+...          .-+.+||+.+++    |......+.....
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~----~~~~~~~~~~~~~  493 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH----------AGVFVIDLASKK----VIHHYDTSNSQLL  493 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET----------TEEEEEESSSSS----CCEEECTTTSSCS
T ss_pred             CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC----------CceEEEeCCCCe----EEecccCcccccc
Confidence            4799999999998875321 11112222222 568887532          256889999988    8765432211000


Q ss_pred             ccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeeccc--ccccCCCCcEEEE-eCCeEEEEeCCCCeE-EEEeCCCC
Q 016552          243 REAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGPVAAM-DEEVLYGIDENSCTL-SRYDEVMD  316 (387)
Q Consensus       243 ~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~~~~~-~~~~ly~~~~~~~~l-~~yd~~~~  316 (387)
                      .....+...  +|.|++... +..+..||+.+++++....  .++.. ...+++. .+|.|++-..  +.+ ..||++++
T Consensus       494 ~~~i~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~  569 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRFWIGTF-GGGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQMWLATG--EGLVCFPSARNF  569 (781)
T ss_dssp             CSCEEEEEECTTCCEEEEES-SSCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCEEEEET--TEEEEESCTTTC
T ss_pred             cceeEEEEEcCCCCEEEEEc-CCCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCEEEEEC--CCceEEECCCCC
Confidence            011223333  577876543 2358999999998877643  11111 1122333 3567877653  456 99999999


Q ss_pred             ceeEccccccccC--ceEEEE-eCCeEEEEecCCCeEEEEeccCC
Q 016552          317 DWKEVVKSDLLKG--ARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       317 ~W~~v~~~~~~~~--~~~~~~-~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++.......+..  -.+++. -+|.|++.+.  ..+..||+.+.
T Consensus       570 ~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--~Gl~~~~~~~~  612 (781)
T 3v9f_A          570 DYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--TGISCYITSKK  612 (781)
T ss_dssp             CCEEECGGGTCSCCCCCEEEECSSSCEEEECS--SCEEEEETTTT
T ss_pred             cEEEccccCCCCCceEEEEEECCCCCEEEEcC--CceEEEECCCC
Confidence            8877654322221  122322 3577887753  34777887754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.28  E-value=0.0022  Score=59.85  Aligned_cols=172  Identities=12%  Similarity=0.063  Sum_probs=73.0

Q ss_pred             ccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .++.+|..|+  .|+.-.  .  ......+..++++|+.++.+.        .+.++|..+++..  |..-...+.....
T Consensus        20 ~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~dg--------~l~a~d~~tG~~~--w~~~~~~~~~~~~   85 (369)
T 2hz6_A           20 SLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPNDG--------SLYTLGSKNNEGL--TKLPFTIPELVQA   85 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTTC--------CEEEC-----CCS--EECSCCHHHHHTT
T ss_pred             EEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCCC--------EEEEEECCCCcee--eeeeccCcccccc
Confidence            5888998876  476532  1  111223445677888764433        6788998777644  5532211110000


Q ss_pred             ccceEEEEECCEEEEEeeeCCeEEEEECCCC--ceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--e
Q 016552          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD--W  318 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~--W  318 (387)
                         ...+..++.+|+.+ ....+.++|++++  .|+.-....  .    ..+..++.||+. ..++.|++||.++++  |
T Consensus        86 ---sp~~~~~~~v~~g~-~dg~v~a~D~~tG~~~w~~~~~~~--~----~~~p~~~~v~~~-~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           86 ---SPCRSSDGILYMGK-KQDIWYVIDLLTGEKQQTLSSAFA--D----SLSPSTSLLYLG-RTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             ---CSCC-----CCCCE-EEEEEEEECCC----------------------------EEEE-EEEEEEECCCSSSSSCCC
T ss_pred             ---CceEecCCEEEEEe-CCCEEEEEECCCCcEEEEecCCCc--c----cccccCCEEEEE-ecCCEEEEEECCCCCEEE
Confidence               11111366666533 3347899999876  476432211  0    111145566654 345789999998764  7


Q ss_pred             eEccccccccCceEEE---EeCCeEEEEecCCCeEEEEeccCCCCCCceEEe
Q 016552          319 KEVVKSDLLKGARHAA---AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~---~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~  367 (387)
                      +.-...  . ....+.   ..++.+|+ +..++.++.+|..++  ...|+..
T Consensus       155 ~~~~~~--~-~~~~~~~~~~~~~~v~~-~~~dg~v~a~d~~tG--~~~W~~~  200 (369)
T 2hz6_A          155 NATYFD--Y-AASLPEDDVDYKMSHFV-SNGDGLVVTVDSESG--DVLWIQN  200 (369)
T ss_dssp             EEEEEE--E-CCBCCCCCTTCCCCEEE-EETSCEEEEECTTTC--CEEEEEE
T ss_pred             eEeccc--c-cCccccCCccccceEEE-ECCCCEEEEEECCCC--cEEEEec
Confidence            742211  0 000000   12255655 355567888998743  2468764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.24  E-value=0.45  Score=46.54  Aligned_cols=187  Identities=11%  Similarity=-0.051  Sum_probs=94.6

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCC-EEEEEecCCCCCCCCCcceEEEEEC--
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRG-AVYVASGIGSQFSSDVAKSVEKWDL--  221 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~--  221 (387)
                      ++.+|+.+..+       ..+.++|..+++-...-+....  .+..+. -++ .+|+.+. +        +.+.+||.  
T Consensus       148 ~~~~~vs~~~d-------~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~-d--------~~V~v~D~~~  209 (543)
T 1nir_A          148 PNLFSVTLRDA-------GQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGR-D--------ARIDMIDLWA  209 (543)
T ss_dssp             GGEEEEEEGGG-------TEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEET-T--------SEEEEEETTS
T ss_pred             CCEEEEEEcCC-------CeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECC-C--------CeEEEEECcC
Confidence            56777776532       3678899988765432111111  222322 244 5676642 1        47899999  


Q ss_pred             CCCccccCeEEcCCCCCCCccccceEEEEE----CCE-EEEEeeeCCeEEEEECCCCcee-eccc-ccc-c-----CC-C
Q 016552          222 MNGEKNSRWEKTGELKDGRFSREAIDAVGW----KGK-LCLVNVKGAEGAVYDVVANTWD-DMRE-GMV-R-----GW-R  287 (387)
Q Consensus       222 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~----~g~-lyv~gg~~~~i~~yD~~~~~W~-~~~~-~~~-~-----~~-~  287 (387)
                      .+.+    -  +..++.....  .+.+..-    +|+ +|+.+.....+.++|..+.+-. .++. .+. .     .. .
T Consensus       210 ~t~~----~--~~~i~~g~~p--~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          210 KEPT----K--VAEIKIGIEA--RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             SSCE----E--EEEEECCSEE--EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             CCCc----E--EEEEecCCCc--ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence            5554    2  2222222111  1222222    564 6666555678999998876432 2221 010 0     00 1


Q ss_pred             CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCc-eEEEEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          288 GPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGA-RHAAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       288 ~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~-~~~~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..+++..  ++.+|+-...++.|+++|.++.+-..+...+..... .....-+|+ +|+.+...+.|.++|..+.
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence            1223332  456666666678999999877532222222211111 222334555 4444445677888888754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.19  E-value=0.25  Score=48.96  Aligned_cols=122  Identities=12%  Similarity=0.129  Sum_probs=72.7

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC-CCCccccCeEEcCCCCCCCc---c--ccceEEEE--ECCE----EE
Q 016552          189 CAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL-MNGEKNSRWEKTGELKDGRF---S--REAIDAVG--WKGK----LC  256 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~-~~~~~~~~W~~~~~~p~~~~---~--~~~~~~~~--~~g~----ly  256 (387)
                      ...++.+++||+....+        ..+.++|. .+++..  |+.-...+....   .  ......++  .+++    ||
T Consensus        56 ~tP~v~~g~vyv~~~~~--------~~v~AlD~~~tG~~l--W~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~  125 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSFP--------NNTFALGLDDPGTIL--WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALIL  125 (599)
T ss_dssp             SCCEEETTEEEEECSTT--------TCEEEEETTCTTSEE--EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEE
T ss_pred             eccEEECCEEEEEeCCC--------CEEEEEeCCCCCcEE--EEECCCCCccccccccccccccceEEEecCCcceeEEE
Confidence            34566799999985421        26788999 888866  987654332110   0  00011234  5777    88


Q ss_pred             EEeeeCCeEEEEECCCC--ceeecccccccCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCCc--eeEc
Q 016552          257 LVNVKGAEGAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSRYDEVMDD--WKEV  321 (387)
Q Consensus       257 v~gg~~~~i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~-----~~~~l~~yd~~~~~--W~~v  321 (387)
                      +.... ..+.++|.+++  .|+.-......+. ...+.++.+++||+-..     ..+.|++||.++++  |+.-
T Consensus       126 v~t~d-g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          126 KTQLD-GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EECTT-SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEcCC-CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            76543 47999999887  4875322111111 11233456788876432     25789999998764  7754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.17  E-value=0.33  Score=48.11  Aligned_cols=177  Identities=8%  Similarity=0.049  Sum_probs=94.7

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC-CC-CCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG-EL-KDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~-~~-p~~~  240 (387)
                      .+.+||..+.+...  .+........++  .-++++++.|+.+.        .+.+||..+++    -...- .. ....
T Consensus       171 ~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D~--------~i~lwd~~~g~----~~~~~~~~~~~~~  236 (611)
T 1nr0_A          171 TVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGDG--------TIVLYNGVDGT----KTGVFEDDSLKNV  236 (611)
T ss_dssp             CEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCC----EEEECBCTTSSSC
T ss_pred             eEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECCC--------cEEEEECCCCc----Eeeeecccccccc
Confidence            46778866544322  222222111122  23677888887655        78889988776    43221 10 0000


Q ss_pred             ccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCC-CcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          241 FSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       241 ~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      .......++.+  +|+..+.++.+..+.++|..+.+....-. ...... ....+..++..++.+..++.+..||+++..
T Consensus       237 ~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~  315 (611)
T 1nr0_A          237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS  315 (611)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred             ccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec-CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC
Confidence            00011223333  67777777777889999999876543211 010100 111222245555555567889999988765


Q ss_pred             eeEccccccccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          318 WKEVVKSDLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       318 W~~v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      -..  .+.........+  ..+|+.++.++....|.+||+.+.
T Consensus       316 ~~~--~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          316 IDQ--VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEE--EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cce--EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            222  122222222222  346788888888888999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.17  E-value=0.55  Score=44.00  Aligned_cols=177  Identities=10%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..++++|..+..-+.+..... ......-.-+++.+++++.+.     ....+.++|..+++    ...+...+...   
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~-~v~~~~~Spdg~~la~~s~~~-----~~~~i~~~d~~tg~----~~~l~~~~~~~---  225 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFES-----GRSALVIQTLANGA----VRQVASFPRHN---  225 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESS-CEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTTCC----EEEEECCSSCE---
T ss_pred             ceEEEEcCCCCCCEEEeCCCC-cceeeEEcCCCCEEEEEEecC-----CCcEEEEEECCCCc----EEEeecCCCcc---
Confidence            568889987655444432111 111111122555545544432     12478999999988    76655433211   


Q ss_pred             cceEEEEECCE-EEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEE-eCCe-EEEEeCCCC--eEEEEeCCCC
Q 016552          244 EAIDAVGWKGK-LCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV-LYGIDENSC--TLSRYDEVMD  316 (387)
Q Consensus       244 ~~~~~~~~~g~-lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~-ly~~~~~~~--~l~~yd~~~~  316 (387)
                       ...+..-||+ |++.+..+  ..++.+|+.+++...+... ..  ....++. -+|+ |++.....+  .|+.||.++.
T Consensus       226 -~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~--~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~  301 (415)
T 2hqs_A          226 -GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS--NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  301 (415)
T ss_dssp             -EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC-SS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             -cCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCC-CC--cccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence             0112223565 44443322  5699999998877655431 11  1122332 2444 555543233  6999999887


Q ss_pred             ceeEccccccccCceEEEEeCCeEEEEecC---CCeEEEEeccCC
Q 016552          317 DWKEVVKSDLLKGARHAAAGGGRVCAVCEN---GGGIVVVDVKAA  358 (387)
Q Consensus       317 ~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~---~~~i~~~d~~~~  358 (387)
                      .-..+..... .........+|+.++++..   ...++++|+.+.
T Consensus       302 ~~~~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          302 APQRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             CCEECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CEEEEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence            6444332111 1112223346665555442   357899999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.16  E-value=0.59  Score=41.11  Aligned_cols=136  Identities=7%  Similarity=0.032  Sum_probs=73.6

Q ss_pred             ccEEEeccCCceeeCCCCCCCCc-cee-EEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRR-WCA-AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~-~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .+.++|..|++-.+.-.+..... ..+ +..-+++.++.|+.+.        .+.+||..+++    -.........   
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg--------~v~iw~~~~~~----~~~~~~~h~~---  110 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA--------EVQLWDVQQQK----RLRNMTSHSA---  110 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE----EEEEEECCSS---
T ss_pred             EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC--------cEEEeecCCce----eEEEecCccc---
Confidence            68999999987665433332221 112 2223667778877654        78899998887    3322211111   


Q ss_pred             ccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          243 REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                        ...+...++.+.+.++....+..++..+......................++.+++.+..++.+.+||.++.+
T Consensus       111 --~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          111 --RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             --CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             --eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence              1334445566656665556677777665543322110001100111122345666666678899999997653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=96.16  E-value=0.98  Score=43.75  Aligned_cols=180  Identities=8%  Similarity=0.047  Sum_probs=95.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..++.++.+       ..+.++|..+..-..+..... .....+..-+++.++.|+.+.        .+.+||.....
T Consensus       314 ~~~~l~t~~~d-------~~i~~w~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg--------~v~~~~~~~~~  377 (577)
T 2ymu_A          314 DGQTIASASDD-------KTVKLWNRNGQHLQTLTGHSS-SVWGVAFSPDGQTIASASDDK--------TVKLWNRNGQL  377 (577)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTS--------EEEEEETTCCE
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCeeEEEeCCCC-CEEEEEECCCCCEEEEEeCCC--------EEEEEcCCCCE
Confidence            34555555532       246778876665444332111 111112223566667666543        67788865444


Q ss_pred             cccCeEEcCCCCCCCccccceEEE--EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEe
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAV--GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~--~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~  302 (387)
                          -..+......      ..++  .-+|+..+.++.+..+.+||.....-..+.. .  .....++++ .++++++.+
T Consensus       378 ----~~~~~~~~~~------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~-~--~~~v~~~~~s~d~~~l~~~  444 (577)
T 2ymu_A          378 ----LQTLTGHSSS------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-H--SSSVWGVAFSPDDQTIASA  444 (577)
T ss_dssp             ----EEEEECCSSC------EEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC-C--SSCEEEEEECTTSSEEEEE
T ss_pred             ----EEEecCCCCC------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC-C--CCCeEEEEECCCCCEEEEE
Confidence                3333321111      2222  2367766677666788999865433222221 1  111122333 256666777


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCce--EEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGAR--HAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~~--~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +.++.+..||.....-..+.   ......  .....++++++.++....|.+||...
T Consensus       445 ~~d~~v~~w~~~~~~~~~~~---~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~  498 (577)
T 2ymu_A          445 SDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  498 (577)
T ss_dssp             ETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             cCCCEEEEEECCCCEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence            67889999997665333322   222222  22334788888888888899999663

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.14  E-value=0.4  Score=49.18  Aligned_cols=175  Identities=12%  Similarity=0.022  Sum_probs=92.3

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-C-CCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-G-ELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-~-~~p~~~  240 (387)
                      .+..++.....+..+.+-  .+...+.+.  .+++||++-..        ...|..+++...........+ . .+..+.
T Consensus       405 ~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~--------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          405 EVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             SEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT--------TTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc--------ceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            345556655555544221  111122222  25789998432        235677776542100003332 2 222111


Q ss_pred             ccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEE--eCCeEEEEeCC-CCeEEEEeCCC
Q 016552          241 FSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--DEEVLYGIDEN-SCTLSRYDEVM  315 (387)
Q Consensus       241 ~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--~~~~ly~~~~~-~~~l~~yd~~~  315 (387)
                           ..++- .+++||+.......|.++|+....-+.+..   .....+ .+++  .++.||+.+.. ...|++.+++.
T Consensus       475 -----GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          475 -----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             -----EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             -----eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence                 11222 357999987766889999998765544422   111122 3444  35799999843 37899999987


Q ss_pred             CceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          316 DDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..=+.+.. ..+..+.+++.  .+++||++=.....|.++|++..
T Consensus       547 ~~~~~lv~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          547 VDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEe-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            64443332 12223333333  46888888666677888877643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.07  E-value=1.3  Score=43.98  Aligned_cols=183  Identities=12%  Similarity=-0.023  Sum_probs=107.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.||+.--       ....++++++.....+.+..-...+.. ..++  .+++||+.-..        ...+++.++..
T Consensus       360 ~~~ly~sD~-------~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~--------~~~I~v~~~~G  423 (619)
T 3s94_A          360 EGYIYWTDD-------EVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTG--------TDRIEVTRLNG  423 (619)
T ss_dssp             TTEEEEEET-------TTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETT--------TTEEEEEETTS
T ss_pred             CCeEEEEeC-------CCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCC--------CCcEEEEeCCC
Confidence            467777632       224577777776555544322211111 2333  37899998322        34788888876


Q ss_pred             CccccCeEEcC--CCCCCCccccceEEEEE---CCEEEEEee-eCCeEEEEECCCCceeecccccccCCCCcEEEEe--C
Q 016552          224 GEKNSRWEKTG--ELKDGRFSREAIDAVGW---KGKLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD--E  295 (387)
Q Consensus       224 ~~~~~~W~~~~--~~p~~~~~~~~~~~~~~---~g~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~--~  295 (387)
                      ..    -..+.  .+..|       .++++   +|.||+..- ....|+..++.-..=..+... ...+. .++++.  +
T Consensus       424 ~~----~~~l~~~~l~~P-------~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~-~l~~P-~GlalD~~~  490 (619)
T 3s94_A          424 TM----RKILISEDLEEP-------RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT-SLGWP-NGLALDYDE  490 (619)
T ss_dssp             CS----CEEEECTTCCSE-------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-SCSCE-EEEEEETTT
T ss_pred             Ce----EEEEEECCCCCe-------eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC-CCCCC-eeeEEcccC
Confidence            54    33332  22222       23333   589998863 235788888764322222110 11111 234444  6


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++||+.+...+.|..+|++...=+.+.. .....+++++..++.||+.-.....|..+|..++
T Consensus       491 ~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          491 GKIYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEEE-CCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC
T ss_pred             CEEEEEECCCCEEEEEecCCCceEEEec-cCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC
Confidence            8999999888899999997654333322 2234566778889999999667788888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.03  E-value=0.0021  Score=63.77  Aligned_cols=34  Identities=18%  Similarity=0.510  Sum_probs=25.9

Q ss_pred             CCCCCCChHHHHHHHhhhcC----chhhhhhhHhhhhh
Q 016552           40 QPLLPGLPDHIAHLCLSHVH----PSILHNVCHSWRRL   73 (387)
Q Consensus        40 ~~~~~~LPddl~~~iL~rLP----l~~~r~VcK~W~~l   73 (387)
                      ...|..||||++.+||.+||    ..+++.|||+|+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            46789999999999999999    68999999999988

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.01  E-value=0.42  Score=42.50  Aligned_cols=184  Identities=13%  Similarity=0.021  Sum_probs=93.5

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +.||+.+..       ...+++||+ ++..+.+.. +.......+..-++++|+.....        ..+..||+. ++ 
T Consensus        57 ~~l~~~d~~-------~~~i~~~~~-~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~--------~~v~~~~~~-g~-  117 (305)
T 3dr2_A           57 RTLVWSDLV-------GRRVLGWRE-DGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGR--------RAITRSDAD-GQ-  117 (305)
T ss_dssp             TEEEEEETT-------TTEEEEEET-TSCEEEEEE-SCSCEEEEEECTTSCEEEEETTT--------TEEEEECTT-SC-
T ss_pred             CEEEEEECC-------CCEEEEEeC-CCCEEEEeC-CCCccceeeECCCCCEEEEECCC--------CEEEEECCC-CC-
Confidence            347776542       135788888 444443321 11111111222367888764221        257778875 55 


Q ss_pred             ccCeEEcCCCCCC-CccccceEEEEECCEEEEEe---ee--------------CCeEEEEECCCCceeecccccccCCCC
Q 016552          227 NSRWEKTGELKDG-RFSREAIDAVGWKGKLCLVN---VK--------------GAEGAVYDVVANTWDDMREGMVRGWRG  288 (387)
Q Consensus       227 ~~~W~~~~~~p~~-~~~~~~~~~~~~~g~lyv~g---g~--------------~~~i~~yD~~~~~W~~~~~~~~~~~~~  288 (387)
                         ...+...... ........++--+|++|+..   |.              ...++.||+++++.+.+. ....   .
T Consensus       118 ---~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~---p  190 (305)
T 3dr2_A          118 ---AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDH---P  190 (305)
T ss_dssp             ---EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESS---E
T ss_pred             ---EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCC---C
Confidence               5554321111 11101122333478899852   11              146899999888877654 2211   1


Q ss_pred             cEEEEe-CC-eEEEEeCCC-----CeEEEEeCCCCceeEcc---ccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          289 PVAAMD-EE-VLYGIDENS-----CTLSRYDEVMDDWKEVV---KSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~~~-~~-~ly~~~~~~-----~~l~~yd~~~~~W~~v~---~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..+++. ++ .||+.+...     +.|++||.+.+......   ..+........+..+|+|++..  +..|.+||+...
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~  268 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ  268 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSEEEEECTTSC
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCcEEEECCCCC
Confidence            233332 34 588887542     68999998766422111   1111111122334567777764  446899998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.00  E-value=0.3  Score=45.77  Aligned_cols=173  Identities=11%  Similarity=0.018  Sum_probs=92.3

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEc-C-CCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKT-G-ELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~-~-~~p~~~  240 (387)
                      .+.+.|+.+..+..+.+  ......+.+.  .+++||+.--.        ...+..+++...........+ . .+..+ 
T Consensus        93 ~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~--------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p-  161 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSSYDTVISRDIQAP-  161 (400)
T ss_dssp             EEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT--------TTEEEEEEC------CCCEEEECSSCSCE-
T ss_pred             eeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC--------CCeEEEEEcccCCCCCcceEEEeCCCCCc-
Confidence            45666776666655422  1122222332  25799997432        236777887642100002222 2 11111 


Q ss_pred             ccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEE--eCCeEEEEeCC-CCeEEEEeCC
Q 016552          241 FSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--DEEVLYGIDEN-SCTLSRYDEV  314 (387)
Q Consensus       241 ~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--~~~~ly~~~~~-~~~l~~yd~~  314 (387)
                           ...++  .++.||+.......|.++|++...-..+..   .....+ .+++  .++.||+.+.. .+.|++++++
T Consensus       162 -----~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          162 -----DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             -----EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             -----ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence                 11222  378999997766789999998765444322   111222 3444  36899998743 4689999998


Q ss_pred             CCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccC
Q 016552          315 MDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       315 ~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ...=+.+.. .....+..++.  .+++||+.=.....|..+|.+.
T Consensus       234 G~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          234 GVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCccEEEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            753333221 12222333333  3678888866667788888764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.95  E-value=0.78  Score=44.47  Aligned_cols=170  Identities=5%  Similarity=-0.040  Sum_probs=88.2

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      .+.++|......+.+.....  ...+.+ .-+++.++.++.+.        .+.++|.....    -..+.......   
T Consensus       285 ~i~~w~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~t~~~d~--------~i~~w~~~~~~----~~~~~~~~~~v---  347 (577)
T 2ymu_A          285 TVKLWNRNGQLLQTLTGHSS--SVWGVAFSPDGQTIASASDDK--------TVKLWNRNGQH----LQTLTGHSSSV---  347 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSS--CEEEEEECTTSSEEEEEETTS--------CEEEEETTSCE----EEEECCCSSCE---
T ss_pred             EEEEEeCCCcEEEEEecCCC--CeEEEEECCCCCEEEEEeCCC--------eEEEEeCCCCe----eEEEeCCCCCE---
Confidence            45667765544443322111  111122 22456666665533        56778876665    44433221110   


Q ss_pred             cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcc
Q 016552          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVV  322 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~  322 (387)
                       ...+..-+|+..+.+..+..+.+||.....-..+.. .  .....++++ .+++.++.++.++.+..||.....-..  
T Consensus       348 -~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~-~--~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~--  421 (577)
T 2ymu_A          348 -WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG-H--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT--  421 (577)
T ss_dssp             -EEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC-C--SSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEE--
T ss_pred             -EEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC-C--CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE--
Confidence             011222367776776666788899965544333321 1  111122333 356666677677889999965443222  


Q ss_pred             ccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          323 KSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       323 ~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                       +........  ....+++.++.++....+.+||....
T Consensus       422 -~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~  458 (577)
T 2ymu_A          422 -LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ  458 (577)
T ss_dssp             -EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred             -ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence             222222222  23346788888788888999997643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.93  E-value=0.72  Score=39.73  Aligned_cols=175  Identities=10%  Similarity=-0.077  Sum_probs=87.0

Q ss_pred             CCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC-CccccCeEEcCCCCCCC
Q 016552          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN-GEKNSRWEKTGELKDGR  240 (387)
Q Consensus       162 ~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-~~~~~~W~~~~~~p~~~  240 (387)
                      ....++++|+.+++...+......- ......-+++.+++++ +        ..+.+||..+ .+    ...+.......
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v-~~~~~spdg~~l~~~~-~--------~~i~~~d~~~~~~----~~~~~~~~~~~   85 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELF-EAPNWSPDGKYLLLNS-E--------GLLYRLSLAGDPS----PEKVDTGFATI   85 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCC-EEEEECTTSSEEEEEE-T--------TEEEEEESSSCCS----CEECCCTTCCC
T ss_pred             cceeEEEEeCCCCceeeeccCCcce-EeeEECCCCCEEEEEc-C--------CeEEEEeCCCCCC----ceEeccccccc
Confidence            3457899999998877654432211 1112223556555543 1        2789999998 77    66554332111


Q ss_pred             ccccceEEEEECCEEEEEeee----CCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-eEEEEeCCCC--eEEEEe
Q 016552          241 FSREAIDAVGWKGKLCLVNVK----GAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSC--TLSRYD  312 (387)
Q Consensus       241 ~~~~~~~~~~~~g~lyv~gg~----~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~ly~~~~~~~--~l~~yd  312 (387)
                      ..  ......-+|+..++...    ...++.+|..++.-..+.....    ...++.. ++ .|++.....+  .|+.+|
T Consensus        86 ~~--~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           86 CN--NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLP----SYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             BC--SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSS----EEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             cc--cceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCC----ccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            10  01223336665544441    2578888887776554433111    1222332 34 4554544445  456666


Q ss_pred             CCCCceeEccccccccCceEEEEeCCeEEE-EecCC--CeEEEEeccC
Q 016552          313 EVMDDWKEVVKSDLLKGARHAAAGGGRVCA-VCENG--GGIVVVDVKA  357 (387)
Q Consensus       313 ~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v-~gg~~--~~i~~~d~~~  357 (387)
                      .++.....+...+... .......+|+.++ .+...  ..++.++..+
T Consensus       160 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~  206 (297)
T 2ojh_A          160 IDSGVETRLTHGEGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG  206 (297)
T ss_dssp             TTTCCEEECCCSSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCCCcceEcccCCCcc-ccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence            7776665544322111 1222233565444 43323  4556666543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.90  E-value=0.65  Score=43.91  Aligned_cols=186  Identities=9%  Similarity=-0.013  Sum_probs=99.3

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.||+.--.        ..+.++|+.++....+.+ ...+....+...++ .|||......    .....+..++... 
T Consensus       149 ~g~Lyv~d~~--------~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~----~~~~~v~~~~~~g-  214 (430)
T 3tc9_A          149 HNHLYLVGEQ--------HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNN----NDRPNNYILTRES-  214 (430)
T ss_dssp             EEEEEEEEBT--------EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSC----TTSEEEEEEEGGG-
T ss_pred             CCeEEEEeCC--------CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCC----cccceEEEEeCCC-
Confidence            4678887431        578999999988877643 11222222222344 5999864322    1122455566543 


Q ss_pred             ccccCeE---EcCCCCCCCccccceEEEE-E-CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-e
Q 016552          225 EKNSRWE---KTGELKDGRFSREAIDAVG-W-KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-V  297 (387)
Q Consensus       225 ~~~~~W~---~~~~~p~~~~~~~~~~~~~-~-~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~  297 (387)
                      .    |.   .++.+..+      +..++ - +|.||+.......+.+||+.+..-..+.......+. ..+++. +| .
T Consensus       215 ~----~~~~~~l~~~~~p------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P-~gia~~pdG~~  283 (430)
T 3tc9_A          215 G----FKVITELTKGQNC------NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE-FHIQFHPSGNY  283 (430)
T ss_dssp             T----SCSEEEEEECSSC------CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC-EEEEECTTSSE
T ss_pred             c----eeeeeeeccCCCc------eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc-eeEEEcCCCCE
Confidence            2    33   33322222      22222 2 688998876557899999987754333211111111 233432 34 4


Q ss_pred             EEEEeCCCCeEEEEeCCC--Cce---eEccccc-------------cccCce-EEEEe---------CCeEEEEecCCCe
Q 016552          298 LYGIDENSCTLSRYDEVM--DDW---KEVVKSD-------------LLKGAR-HAAAG---------GGRVCAVCENGGG  349 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~--~~W---~~v~~~~-------------~~~~~~-~~~~~---------~g~i~v~gg~~~~  349 (387)
                      ||+.+.....|+++|.+.  +..   ..+...+             .+..+. .++.-         +|.||+.-..+..
T Consensus       284 lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~  363 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC  363 (430)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred             EEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence            999988778898877653  222   1111110             111233 23332         3678888666788


Q ss_pred             EEEEecc
Q 016552          350 IVVVDVK  356 (387)
Q Consensus       350 i~~~d~~  356 (387)
                      |..+|..
T Consensus       364 I~~i~~~  370 (430)
T 3tc9_A          364 IRILTPQ  370 (430)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            8888855

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.88  E-value=1.7  Score=43.67  Aligned_cols=61  Identities=18%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             CeEEEEeCCCC--ceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEeCCCC
Q 016552          306 CTLSRYDEVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDTPLG  371 (387)
Q Consensus       306 ~~l~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~~p~~  371 (387)
                      +.|.++|++++  .|+.-...+..  .. .....|.++++|...+.+.++|..+.  ...|....+.+
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~--~g-~~~~~g~~v~~g~~dg~l~a~D~~tG--~~lw~~~~~~~  519 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWN--GG-TLTTAGNVVFQGTADGRLVAYHAATG--EKLWEAPTGTG  519 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCC--CC-EEEETTTEEEEECTTSEEEEEETTTC--CEEEEEECSSC
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCc--Cc-ceEeCCCEEEEECCCCcEEEEECCCC--ceeeeeeCCCC
Confidence            57999999886  47653322211  22 23344445555666788999998854  24688765543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.85  E-value=0.91  Score=45.48  Aligned_cols=183  Identities=9%  Similarity=0.039  Sum_probs=92.3

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEE--EeCCEEEEEecCCCCCCCCCcceEEEEECCCC-ccccCeEEcCCCCCCC
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAG--CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG-EKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-~~~~~W~~~~~~p~~~  240 (387)
                      ..++++|..+++-..+.............  .-+++..+++..+.   ......+.++|..++ .    ...+.......
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~~v~~~d~~~g~~----~~~~~~~~~~~  307 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR---AQNECKVNAYDAETGRF----VRTLFVETDKH  307 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT---TSCEEEEEEEETTTCCE----EEEEEEEECSS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC---CCCeeEEEEEECCCCce----eeEEEEccCCC
Confidence            46899999998876654322111222222  22555333333322   112347889999888 5    65543111110


Q ss_pred             cc-ccceEEEEE--CCEEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcE-EEE--eCCeEEEEeCCCC----eE
Q 016552          241 FS-REAIDAVGW--KGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPV-AAM--DEEVLYGIDENSC----TL  308 (387)
Q Consensus       241 ~~-~~~~~~~~~--~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~-~~~--~~~~ly~~~~~~~----~l  308 (387)
                      .. ........-  ||++++.+..+  ..++.+|........+...   .+.... ++.  .++.||+.+...+    .|
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS---SSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC---CeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence            00 000112233  77765554433  5677778766666665431   111112 222  2446777765443    78


Q ss_pred             EEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC----CeEEEEeccCC
Q 016552          309 SRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG----GGIVVVDVKAA  358 (387)
Q Consensus       309 ~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~----~~i~~~d~~~~  358 (387)
                      +.+|.++...+.+......  ......-+|+.+++...+    ..++++|..+.
T Consensus       385 ~~~d~~~~~~~~l~~~~~~--~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          385 YCIDIKGGKTKDLTPESGM--HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EEEETTCCCCEESCCSSSE--EEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEEEcCCCCceeccCCCce--EEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            9999988776655421111  122233456655554321    45888887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.78  E-value=0.61  Score=47.08  Aligned_cols=119  Identities=14%  Similarity=0.195  Sum_probs=73.0

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc-----ccceEEEEECCEEEEEeeeCCe
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKGAE  264 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~-----~~~~~~~~~~g~lyv~gg~~~~  264 (387)
                      ..++.+++||+....         ..+.++|..+++..  |+.-...+.....     ......++.+++||+.... ..
T Consensus        65 ~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d-g~  132 (689)
T 1yiq_A           65 TPIVVDGVMYTTGPF---------SVVYALDARDGRLI--WKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD-GR  132 (689)
T ss_dssp             CCEEETTEEEEECGG---------GCEEEEETTTCCEE--EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-SE
T ss_pred             cCEEECCEEEEEcCC---------CeEEEEECCCCcee--EEEcCCCCccccccccccCCCCccEEECCEEEEEccC-CE
Confidence            345679999997531         35788999988866  8875433321100     0011235678999886543 48


Q ss_pred             EEEEECCCC--ceeeccc-ccccCC-CCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCCc--eeE
Q 016552          265 GAVYDVVAN--TWDDMRE-GMVRGW-RGPVAAMDEEVLYGIDE-----NSCTLSRYDEVMDD--WKE  320 (387)
Q Consensus       265 i~~yD~~~~--~W~~~~~-~~~~~~-~~~~~~~~~~~ly~~~~-----~~~~l~~yd~~~~~--W~~  320 (387)
                      +.++|.+++  .|+.... ...... ...+.++.++.+|+-..     ..+.|++||.++++  |+.
T Consensus       133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            999999887  4875432 111111 12233456888877432     14689999998875  875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.77  E-value=1.1  Score=40.53  Aligned_cols=182  Identities=11%  Similarity=0.033  Sum_probs=91.1

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEE-ECC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKW-DLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~y-d~~  222 (387)
                      -++.+|+.+..        ..+++-+=.-.+|+.+.... +...+..+.. ++++|++|.. .        .+..- |..
T Consensus       131 ~~~~~~~~~~~--------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~-G--------~~~~S~d~g  192 (327)
T 2xbg_A          131 GNGSAEMITNV--------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSR-G--------SFYSTWEPG  192 (327)
T ss_dssp             ETTEEEEEETT--------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETT-S--------SEEEEECTT
T ss_pred             CCCCEEEEeCC--------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECC-C--------cEEEEeCCC
Confidence            45777776641        12444333356899875322 2233333333 4566665522 1        11221 322


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEE-EECCEEEEEeeeCCeEEEEECC-CCceeecccc-cccCCCCcEEEEe-CCeE
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAV-GWKGKLCLVNVKGAEGAVYDVV-ANTWDDMREG-MVRGWRGPVAAMD-EEVL  298 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~-~~~g~lyv~gg~~~~i~~yD~~-~~~W~~~~~~-~~~~~~~~~~~~~-~~~l  298 (387)
                      -.+    |..+........    ...+ .-++.+|+.+..+ .+...+.. -.+|+.+... ++.......++.. ++.+
T Consensus       193 G~t----W~~~~~~~~~~~----~~~~~~~~g~~~~~~~~G-~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~  263 (327)
T 2xbg_A          193 QTA----WEPHNRTTSRRL----HNMGFTPDGRLWMIVNGG-KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV  263 (327)
T ss_dssp             CSS----CEEEECCSSSCE----EEEEECTTSCEEEEETTT-EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred             CCc----eeECCCCCCCcc----ceeEECCCCCEEEEeCCc-eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence            455    998853221111    2222 2367888775433 44444333 5589987642 2222112233332 5688


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEcccccc-ccCceEEEE-eCCeEEEEecCCCeEEEEec
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDL-LKGARHAAA-GGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~-~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~  355 (387)
                      |+.+. .+.++.-.-...+|+.+..... ....+.++. -+++++++ |....++.++.
T Consensus       264 ~~~g~-~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~G~i~~~~~  320 (327)
T 2xbg_A          264 WLAGG-AGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL-GQKGILLRYVT  320 (327)
T ss_dssp             EEEES-TTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE-CSTTEEEEECC
T ss_pred             EEEeC-CCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE-cCCceEEEEcC
Confidence            88875 4566655555789998874321 222233333 35666666 55556776664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.76  E-value=0.47  Score=47.70  Aligned_cols=119  Identities=13%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc-----ccceEEEEECCEEEEEeeeCCe
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKGAE  264 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~-----~~~~~~~~~~g~lyv~gg~~~~  264 (387)
                      ..++.+++||+....         ..+.++|..+++..  |+.-...+.....     ......++.+++||+.... ..
T Consensus        61 ~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~  128 (668)
T 1kv9_A           61 TPLFHDGVIYTSMSW---------SRVIAVDAASGKEL--WRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD-GR  128 (668)
T ss_dssp             CCEEETTEEEEEEGG---------GEEEEEETTTCCEE--EEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-SE
T ss_pred             CCEEECCEEEEECCC---------CeEEEEECCCChhc--eEECCCCCccccccccccCCccceEEECCEEEEEcCC-CE
Confidence            345679999997542         36788999888866  8875543321000     0001235578999876533 48


Q ss_pred             EEEEECCCC--ceeecccccccCC-CCcEEEEeCCeEEEEeCC-----CCeEEEEeCCCCc--eeE
Q 016552          265 GAVYDVVAN--TWDDMREGMVRGW-RGPVAAMDEEVLYGIDEN-----SCTLSRYDEVMDD--WKE  320 (387)
Q Consensus       265 i~~yD~~~~--~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~~-----~~~l~~yd~~~~~--W~~  320 (387)
                      +.++|.+++  .|+.-........ ...+.++.++.+|+-...     .+.|++||.++++  |+.
T Consensus       129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            999999887  4875432111111 122334567888775332     3689999998764  865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.68  E-value=0.73  Score=45.00  Aligned_cols=267  Identities=10%  Similarity=-0.034  Sum_probs=128.0

Q ss_pred             CCChHHHHHHHhhhcC-------chhhhhhhHhhhhhhcC------CCC--CceeeEEeecCCCCCCCCCCeEEEEEeCC
Q 016552           44 PGLPDHIAHLCLSHVH-------PSILHNVCHSWRRLIYS------PSF--PPFLSLYALFSPKSNSSSTPIHLFTFDPV  108 (387)
Q Consensus        44 ~~LPddl~~~iL~rLP-------l~~~r~VcK~W~~li~~------~~f--~~~~~l~~~~~~~~~~~~~~~~~~~~d~~  108 (387)
                      ..|.|+-+..+.+.|-       -..+..+.+.|..+..-      +.+  .+-..+|+...       ....+.++|..
T Consensus        95 ~~ls~~ei~~l~~yl~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~p~~~~~vs~~-------~d~~V~v~D~~  167 (543)
T 1nir_A           95 GELSKEQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLR-------DAGQIALVDGD  167 (543)
T ss_dssp             TSSCHHHHHHHHHHTTSCCCBCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEEG-------GGTEEEEEETT
T ss_pred             cCCCHHHHHHHHHHHHhcccCCCccchhhhhhhhccccccccCCcccccccCCCCEEEEEEc-------CCCeEEEEECC
Confidence            4577877777766654       23445566677655411      111  11113444332       12346677887


Q ss_pred             CCCeecCCCCCCCCcccccccCCCccccccceEEEE-ECC-EEEEEecccCCCCCCCCccEEEec--cCCceeeCCCCCC
Q 016552          109 SSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVS-LSG-KLILLAATTHNFNPALTRPLIFDP--ICRTWTFGPELVT  184 (387)
Q Consensus       109 ~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~vyd~--~t~~W~~l~~~p~  184 (387)
                      +++-...  ++..               ...+.++. -++ .||+.+. +       ..+.+||.  .|.+-.  ..++.
T Consensus       168 t~~~~~~--i~~g---------------~~~~~v~~spdg~~l~v~~~-d-------~~V~v~D~~~~t~~~~--~~i~~  220 (543)
T 1nir_A          168 SKKIVKV--IDTG---------------YAVHISRMSASGRYLLVIGR-D-------ARIDMIDLWAKEPTKV--AEIKI  220 (543)
T ss_dssp             TCCEEEE--EECS---------------TTEEEEEECTTSCEEEEEET-T-------SEEEEEETTSSSCEEE--EEEEC
T ss_pred             CceEEEE--EecC---------------cccceEEECCCCCEEEEECC-C-------CeEEEEECcCCCCcEE--EEEec
Confidence            7644211  1110               00133322 244 4555432 1       56899999  665432  22222


Q ss_pred             CCcceeEE-Ee----CC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC---C--Ccccc-ceEEEEE-
Q 016552          185 PRRWCAAG-CS----RG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD---G--RFSRE-AIDAVGW-  251 (387)
Q Consensus       185 ~r~~~~~~-~~----~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~---~--~~~~~-~~~~~~~-  251 (387)
                      ...-...+ .-    ++ .+|+..-.+        ..+.++|..+.+    -...-+...   .  .+... ...++.. 
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~--------~~v~v~D~~t~~----~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWP--------PQFAIMDGETLE----PKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEES--------SEEEEEETTTCC----EEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccC--------CeEEEEeccccc----cceeecccCcccCccccccCCceEEEEEC
Confidence            22212222 22    45 566653222        367889988776    322211110   0  00000 0122222 


Q ss_pred             --CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCe-EEEEeCCCCeEEEEeCCCCceeEccc---c
Q 016552          252 --KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEV-LYGIDENSCTLSRYDEVMDDWKEVVK---S  324 (387)
Q Consensus       252 --~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~-ly~~~~~~~~l~~yd~~~~~W~~v~~---~  324 (387)
                        ++.+|+.......+.++|..+.+-..+.. ...+.....+++ -+|+ +|+....+++|.+||.++++-.....   .
T Consensus       289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~  367 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  367 (543)
T ss_dssp             SSSSEEEEEETTTTEEEEEECTTSSSCEEEE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCCCEEEEEECCCCeEEEEEecCCCcceeEE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence              34455544444789999988753211111 111111122333 2444 66655557789999999886443222   1


Q ss_pred             ccccCceEEEEe-CCeEEEEec-CCCeEEEEeccC
Q 016552          325 DLLKGARHAAAG-GGRVCAVCE-NGGGIVVVDVKA  357 (387)
Q Consensus       325 ~~~~~~~~~~~~-~g~i~v~gg-~~~~i~~~d~~~  357 (387)
                      |..-.....+.- ++.+|+.+. +.+.|.++|..+
T Consensus       368 ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          368 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence            222122222222 377888765 457899999986

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.63  E-value=0.3  Score=43.38  Aligned_cols=135  Identities=15%  Similarity=0.034  Sum_probs=68.1

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCCceee-ccccccc--CCCCcE
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVANTWDD-MREGMVR--GWRGPV  290 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~--~~~~~~  290 (387)
                      .+.++|..+.+    -...-.++...... ...+..-+| .+|+.+.....+.++|+.+++-.. +....+.  +.....
T Consensus        12 ~v~~~d~~~~~----~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~   86 (337)
T 1pby_B           12 KLVVIDTEKMA----VDKVITIADAGPTP-MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG   86 (337)
T ss_dssp             EEEEEETTTTE----EEEEEECTTCTTCC-CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred             eEEEEECCCCc----EEEEEEcCCCCCCc-cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence            78889998877    43322222210000 022233356 577776555789999998876432 2211100  001122


Q ss_pred             EEEe--CCeEEEEeC-----------CCCeEEEEeCCCCceeEccccccccCceEEEEeCCe-EEEEecCCCeEEEEecc
Q 016552          291 AAMD--EEVLYGIDE-----------NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGR-VCAVCENGGGIVVVDVK  356 (387)
Q Consensus       291 ~~~~--~~~ly~~~~-----------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~-i~v~gg~~~~i~~~d~~  356 (387)
                      +++.  ++.||+...           ..+.|.+||.++.+........... ......-+|+ |++.   +..+.++|+.
T Consensus        87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~---~~~i~~~d~~  162 (337)
T 1pby_B           87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-TMLAWARDGSKLYGL---GRDLHVMDPE  162 (337)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC-CCEEECTTSSCEEEE---SSSEEEEETT
T ss_pred             eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCc-ceeEECCCCCEEEEe---CCeEEEEECC
Confidence            3332  346777641           2478999999887654322221111 1222333555 4444   4568888876


Q ss_pred             CC
Q 016552          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       163 ~~  164 (337)
T 1pby_B          163 AG  164 (337)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=95.60  E-value=0.25  Score=46.47  Aligned_cols=147  Identities=6%  Similarity=0.020  Sum_probs=77.4

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCE-EEEEeeeCCeEEEEECC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGK-LCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~-lyv~gg~~~~i~~yD~~  271 (387)
                      ++.+++.|+.+.        .+.+||..+....-.-..+....      ....++.+  ++. +++.++.+..+.+||..
T Consensus       243 ~~~~l~s~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~  308 (430)
T 2xyi_A          243 HESLFGSVADDQ--------KLMIWDTRNNNTSKPSHTVDAHT------AEVNCLSFNPYSEFILATGSADKTVALWDLR  308 (430)
T ss_dssp             CTTEEEEEETTS--------EEEEEETTCSCSSSCSEEEECCS------SCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEeCCC--------eEEEEECCCCCCCcceeEeecCC------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence            456777776544        78899998762000011111111      11223333  343 77777777889999987


Q ss_pred             CCc--eeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCce------------eEccccccccCceEEEE
Q 016552          272 ANT--WDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDW------------KEVVKSDLLKGARHAAA  335 (387)
Q Consensus       272 ~~~--W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W------------~~v~~~~~~~~~~~~~~  335 (387)
                      +..  -..+..   ......+++..  +..+++.++.++.|.+||.....=            ..+............+.
T Consensus       309 ~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  385 (430)
T 2xyi_A          309 NLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  385 (430)
T ss_dssp             CTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE
T ss_pred             CCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE
Confidence            632  111111   01111223332  335777777788999999876211            01111111112222222


Q ss_pred             --eCCe-EEEEecCCCeEEEEeccCC
Q 016552          336 --GGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       336 --~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                        -++. +++.++..+.|.+|++.+.
T Consensus       386 ~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          386 WNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ECCCCCCEEEEEECCCCEEEeEcccc
Confidence              3455 7777778888999999865

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.60  E-value=1.9  Score=42.28  Aligned_cols=94  Identities=7%  Similarity=-0.048  Sum_probs=51.3

Q ss_pred             CeEEEEECCCCceeecccccccCCCCcEEEE-eCC-eEEEEeCCCCeEEEEeCCCCceeE---c-cccccccCceEEEEe
Q 016552          263 AEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEE-VLYGIDENSCTLSRYDEVMDDWKE---V-VKSDLLKGARHAAAG  336 (387)
Q Consensus       263 ~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~-~ly~~~~~~~~l~~yd~~~~~W~~---v-~~~~~~~~~~~~~~~  336 (387)
                      ..+...|........+.. ...+..-+...+ .++ .+|+....+++|.++|.++++=..   + ...|.+......+.-
T Consensus       320 g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p  398 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  398 (567)
T ss_dssp             TEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             CeEEEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence            678888887665433332 222222222222 233 455555557889999999885332   2 222332222223333


Q ss_pred             -CCeEEEEec-CCCeEEEEeccC
Q 016552          337 -GGRVCAVCE-NGGGIVVVDVKA  357 (387)
Q Consensus       337 -~g~i~v~gg-~~~~i~~~d~~~  357 (387)
                       ++.+++.+. +.+.|.++|...
T Consensus       399 ~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          399 TFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCcEEEeCCCCCCeEEEecCCC
Confidence             367777764 347789998875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.59  E-value=1.2  Score=44.05  Aligned_cols=187  Identities=10%  Similarity=0.028  Sum_probs=97.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceee-CCC--C---CCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF-GPE--L---VTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~-l~~--~---p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      ++.+++.|+.+       ..+.+||..+++-.. +..  +   .......+.+ .-+++.++.|+.+.        .+.+
T Consensus       201 dg~~las~s~D-------~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~--------~v~l  265 (611)
T 1nr0_A          201 DGSLFASTGGD-------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--------TIKI  265 (611)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--------EEEE
T ss_pred             CCCEEEEEECC-------CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--------eEEE
Confidence            45566666643       257888887765433 211  0   1111111222 22567777777654        7899


Q ss_pred             EECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC--cEEEE-eC
Q 016552          219 WDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG--PVAAM-DE  295 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~--~~~~~-~~  295 (387)
                      ||..+.+    ....-......  ......+..++...+.+..+..+..+|+.+..-...-    .+...  .+++. .+
T Consensus       266 Wd~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~----~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          266 WNVATLK----VEKTIPVGTRI--EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR----YGHNKAITALSSSAD  335 (611)
T ss_dssp             EETTTTE----EEEEEECCSSG--GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE----CCCSSCEEEEEECTT
T ss_pred             EeCCCCc----eeeeecCCCCc--cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE----cCCCCCEEEEEEeCC
Confidence            9998887    55432222111  1113344456666666666678889998876522211    11111  22333 25


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ++.++.++.++.|..||..+..-..+........-..+....+..++.++....+.++|..+
T Consensus       336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred             CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence            66666666788999999988765443211111111222222333344445556677776553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.58  E-value=1.2  Score=41.46  Aligned_cols=129  Identities=14%  Similarity=0.020  Sum_probs=71.3

Q ss_pred             CCEEEEEeeeCCeEEEEECC---CCcee------ecccc--cccCCCCcEEEE-----eCCeEEEEeCCCCeEEEEeCCC
Q 016552          252 KGKLCLVNVKGAEGAVYDVV---ANTWD------DMREG--MVRGWRGPVAAM-----DEEVLYGIDENSCTLSRYDEVM  315 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~---~~~W~------~~~~~--~~~~~~~~~~~~-----~~~~ly~~~~~~~~l~~yd~~~  315 (387)
                      ++.+.+.++.+..+.+||.+   +++-.      .+...  .+.+......++     .++.+++.++.++.|..||.++
T Consensus       122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            45666666666788888874   22211      11100  010011112221     2466777777789999999988


Q ss_pred             CceeEccccccccCceEEEEe--CCeEEEEecCCCeEEEEeccCCCCCCceEE--eCCCCceeEEEEEccCCC
Q 016552          316 DDWKEVVKSDLLKGARHAAAG--GGRVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGFEALSVHIMPRMS  384 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~~~~~~--~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~--~~p~~~~~~~~~~~~~~~  384 (387)
                      .+-...-..+........+..  +++.++.|+..+.|.+||+.+.    +-..  ..+......++...|..+
T Consensus       202 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s  270 (437)
T 3gre_A          202 LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYG  270 (437)
T ss_dssp             CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTC
T ss_pred             CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccC
Confidence            654332222212333333333  6788888888888999999864    3332  224444566666655543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.57  E-value=1.5  Score=41.52  Aligned_cols=186  Identities=13%  Similarity=0.034  Sum_probs=100.7

Q ss_pred             CEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCcc
Q 016552          147 GKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEK  226 (387)
Q Consensus       147 ~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~  226 (387)
                      +.||+.-..        ..+.++|+.+++...+.. ...+....+...+++|||..-...    .....+..++....  
T Consensus       153 g~Lyv~D~~--------~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~----~~~~gv~~~~~~~~--  217 (433)
T 4hw6_A          153 DDLYWVGQR--------DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSS----DTNTGIYLFTRASG--  217 (433)
T ss_dssp             CEEEEECBT--------SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSC----TTSEEEEEECGGGT--
T ss_pred             CEEEEEeCC--------CCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCC----cccceEEEEECCCC--
Confidence            788887431        578999999998877654 112222223333567999853221    11123445554322  


Q ss_pred             ccCeE---EcCCCCCCCccccceEEEEE-CCEEEEEeeeCCeEEEEECCCCce-eecccccccCCCCcEEEEe--CCeEE
Q 016552          227 NSRWE---KTGELKDGRFSREAIDAVGW-KGKLCLVNVKGAEGAVYDVVANTW-DDMREGMVRGWRGPVAAMD--EEVLY  299 (387)
Q Consensus       227 ~~~W~---~~~~~p~~~~~~~~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~~W-~~~~~~~~~~~~~~~~~~~--~~~ly  299 (387)
                         +.   .++.+..+.     ..++-- +|.||+.......+.+||+.+++- ..+.......+. ..+++.  ++.||
T Consensus       218 ---~~~~~~~~~~~~P~-----giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~-~~ia~dpdG~~LY  288 (433)
T 4hw6_A          218 ---FTERLSLCNARGAK-----TCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSN-FHIVWHPTGDWAY  288 (433)
T ss_dssp             ---TCCEEEEEECSSBC-----CCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSC-EEEEECTTSSEEE
T ss_pred             ---eeccccccccCCCC-----EEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCc-ccEEEeCCCCEEE
Confidence               32   222222111     122222 688998876556899999987654 222211111211 234443  44599


Q ss_pred             EEeCCCCeEEEEeCC--CCcee---Ecccc---c----------cccCceEEEE----------eCCeEEEEecCCCeEE
Q 016552          300 GIDENSCTLSRYDEV--MDDWK---EVVKS---D----------LLKGARHAAA----------GGGRVCAVCENGGGIV  351 (387)
Q Consensus       300 ~~~~~~~~l~~yd~~--~~~W~---~v~~~---~----------~~~~~~~~~~----------~~g~i~v~gg~~~~i~  351 (387)
                      +.+.....|+++|.+  +....   .+...   .          .+..+..++.          -+|.|||.-..+..|.
T Consensus       289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred             EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence            998777889997754  33221   11110   0          1122343443          4578998877788898


Q ss_pred             EEecc
Q 016552          352 VVDVK  356 (387)
Q Consensus       352 ~~d~~  356 (387)
                      .+|+.
T Consensus       369 ~~~~~  373 (433)
T 4hw6_A          369 VLTPE  373 (433)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            88875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.79  Score=42.72  Aligned_cols=148  Identities=11%  Similarity=0.021  Sum_probs=82.9

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++.+++.|+.+.        .+.+||..+.+    -...-..+..   .....++.+  ++.+.+.++.+..+.+||+.+
T Consensus       181 ~~~~l~~~~~d~--------~i~iwd~~~~~----~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNLS--------RVIIFDIRTLE----RLQIIENSPR---HGAVSSICIDEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETTS--------EEEEEETTTCC----EEEEEECCGG---GCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEeCCC--------eEEEEeCCCCe----eeEEEccCCC---CCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence            467777776644        78999998877    3222111100   011233333  677777777777899999988


Q ss_pred             CceeecccccccCCCCcEEEE-----eCCeEEEEeCCCCeEEEEeCCCCceeEccc-c----------cc----------
Q 016552          273 NTWDDMREGMVRGWRGPVAAM-----DEEVLYGIDENSCTLSRYDEVMDDWKEVVK-S----------DL----------  326 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-----~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~-~----------~~----------  326 (387)
                      ++....-. ........+++.     .++.+++.++.++.|.+||.++..-...-. .          |.          
T Consensus       246 ~~~~~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          246 NVLIRSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             TEEEEEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             ccEEEEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence            65432110 000000112211     135566667677889999998764222111 0          00          


Q ss_pred             ---cc-CceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          327 ---LK-GARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       327 ---~~-~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                         .. .-.++...++++++.|+....|.+||+.+.
T Consensus       325 ~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          325 GIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             CCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred             ccccCCceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence               00 012233347888888888889999999855

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.52  E-value=0.18  Score=44.77  Aligned_cols=140  Identities=7%  Similarity=-0.061  Sum_probs=74.3

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ++.||++.-..        ..+..||+.++.    -.... .+.. .   ...+..-+|++|+..  ...+..||+++++
T Consensus        24 ~~~l~~~d~~~--------~~i~~~d~~~~~----~~~~~-~~~~-~---~~i~~~~dG~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           24 SNSLLFVDIPA--------KKVCRWDSFTKQ----VQRVT-MDAP-V---SSVALRQSGGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             TTEEEEEETTT--------TEEEEEETTTCC----EEEEE-CSSC-E---EEEEEBTTSSEEEEE--TTEEEEEETTTTE
T ss_pred             CCEEEEEECCC--------CEEEEEECCCCc----EEEEe-CCCc-e---EEEEECCCCCEEEEE--CCeEEEEECCCCc
Confidence            46788875432        378899999887    44332 2211 0   011222367877654  3579999999998


Q ss_pred             eeeccccccc-CCCC-cEEE-EeCCeEEEEeC-----------CCCeEEEEeCCCCceeEccccccccCceEEE-EeCC-
Q 016552          275 WDDMREGMVR-GWRG-PVAA-MDEEVLYGIDE-----------NSCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGG-  338 (387)
Q Consensus       275 W~~~~~~~~~-~~~~-~~~~-~~~~~ly~~~~-----------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g-  338 (387)
                      ++.+...... .... ..++ -.+|++|+-..           ..+.|+.+|++.. ...+..  ....+..++ .-++ 
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~--~~~~pngi~~spdg~  161 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFD--QVDISNGLDWSLDHK  161 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEE--EESBEEEEEECTTSC
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEee--ccccccceEEcCCCC
Confidence            8766532111 1111 1222 23678887541           2346888988643 222221  111122222 2244 


Q ss_pred             eEEEEecCCCeEEEEecc
Q 016552          339 RVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       339 ~i~v~gg~~~~i~~~d~~  356 (387)
                      .+|+.......|++||++
T Consensus       162 ~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEecCCCCcEEEEecc
Confidence            466665556677777753

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.48  E-value=0.78  Score=46.68  Aligned_cols=141  Identities=9%  Similarity=-0.071  Sum_probs=76.9

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++.|++++|...        -+..||+.+++    +.....-...  ......++..  +|.|++-..  ..+..||+.+
T Consensus       482 ~g~lWi~~~t~~--------Gl~~~d~~~~~----~~~~~~~~~~--~~~~~~~i~~d~~g~lWigt~--~Gl~~~~~~~  545 (758)
T 3ott_A          482 EGNVWVLLYNNK--------GIDKINPRTRE----VTKLFADELT--GEKSPNYLLCDEDGLLWVGFH--GGVMRINPKD  545 (758)
T ss_dssp             TSCEEEEETTCS--------SEEEEETTTTE----EEEECTTTSC--GGGCEEEEEECTTSCEEEEET--TEEEEECC--
T ss_pred             CCCEEEEccCCC--------CcEEEeCCCCc----eEEecCCCcC--CCcccceEEECCCCCEEEEec--CceEEEecCC
Confidence            578998766533        36789999998    8876421110  0011223333  577886542  3699999999


Q ss_pred             Cceeeccc-ccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeE
Q 016552          273 NTWDDMRE-GMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGI  350 (387)
Q Consensus       273 ~~W~~~~~-~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i  350 (387)
                      +++..... .++.. ...+++..+|.|++-.  ...|..||+++.+...... +.......+.. -+|.|++- + ..++
T Consensus       546 ~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~fG-~-~~Gl  619 (758)
T 3ott_A          546 ESQQSISFGSFSNN-EILSMTCVKNSIWVST--TNGLWIIDRKTMDARQQNM-TNKRFTSLLFDPKEDCVYLG-G-ADGF  619 (758)
T ss_dssp             CCCCBCCCCC---C-CEEEEEEETTEEEEEE--SSCEEEEETTTCCEEEC---CCCCCSEEEEETTTTEEEEE-C-BSEE
T ss_pred             CceEEecccCCCcc-ceEEEEECCCCEEEEC--CCCeEEEcCCCceeEEecC-CCCceeeeEEECCCCcEEEe-c-CCce
Confidence            88876531 12211 1233444578888865  3469999999987765432 22111222222 35666654 3 3457


Q ss_pred             EEEeccC
Q 016552          351 VVVDVKA  357 (387)
Q Consensus       351 ~~~d~~~  357 (387)
                      ..+|++.
T Consensus       620 ~~f~p~~  626 (758)
T 3ott_A          620 GISHSNL  626 (758)
T ss_dssp             EEEEC--
T ss_pred             EEEChhh
Confidence            7777763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.48  E-value=0.69  Score=41.99  Aligned_cols=200  Identities=10%  Similarity=0.058  Sum_probs=99.5

Q ss_pred             eEEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC----CCCcc-eeEEEe--CCEEEEEecCCCCCCCC
Q 016552          140 VQLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV----TPRRW-CAAGCS--RGAVYVASGIGSQFSSD  211 (387)
Q Consensus       140 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p----~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~  211 (387)
                      +.++.. ++.||++.....  ......+++||+.|++-.+.-.++    .+... ...++.  ++.+|+......     
T Consensus        70 ~gv~~d~~g~L~v~D~g~~--~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~-----  142 (343)
T 2qe8_A           70 LGIKSDGNGIVWMLDNGNQ--SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD-----  142 (343)
T ss_dssp             EEEEECSSSEEEEEECHHH--HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG-----
T ss_pred             eEEEEcCCCcEEEEcCCCC--cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC-----
Confidence            344443 478999753210  001246899999988743311221    11112 223333  468999743100     


Q ss_pred             CcceEEEEECCCCccccCeEEcCC---C-CCC-Cccc------------------cceEEEEE--CC-EEEEEeeeCCeE
Q 016552          212 VAKSVEKWDLMNGEKNSRWEKTGE---L-KDG-RFSR------------------EAIDAVGW--KG-KLCLVNVKGAEG  265 (387)
Q Consensus       212 ~~~~v~~yd~~~~~~~~~W~~~~~---~-p~~-~~~~------------------~~~~~~~~--~g-~lyv~gg~~~~i  265 (387)
                      ....+.+||+.+++   .|..+..   + +.+ .+..                  .....+.+  +| .||+....+..+
T Consensus       143 ~~~~i~v~d~~~g~---~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          143 DKAALIRVDLQTGL---AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             GGCEEEEEETTTCC---EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred             CCCeEEEEECCCCC---EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence            12478899998765   1665532   1 100 0000                  00112222  34 477665444567


Q ss_pred             EEEECCCC---------ceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE
Q 016552          266 AVYDVVAN---------TWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA  335 (387)
Q Consensus       266 ~~yD~~~~---------~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~  335 (387)
                      +.+|....         .+..+...-..+. ...+++ .+|.||+.....+.|.+||+++++...+...+....+..++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~-pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIERYSEKPI-CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEEEEECCS-CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             EEEEHHHhcCCCCChhhhhcceEecccCCC-CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            77764210         0111110000111 123343 367899988777899999996666666655443333333333


Q ss_pred             -eCCeEEEEecCCCeE
Q 016552          336 -GGGRVCAVCENGGGI  350 (387)
Q Consensus       336 -~~g~i~v~gg~~~~i  350 (387)
                       -+|++|+.....+.+
T Consensus       299 ~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          299 GSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CTTSCEEEEECCGGGS
T ss_pred             CCCCcEEEEeCccccc
Confidence             468899886544333

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=95.46  E-value=1.5  Score=40.08  Aligned_cols=191  Identities=12%  Similarity=-0.053  Sum_probs=99.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      +|++.++++..     ....+.++|+.+.+-......... ....+-.-++++++.++.         +.+.+++..++.
T Consensus       144 Dg~~la~as~~-----~d~~i~iwd~~~~~~~~~~~~~~~-V~~v~fspdg~~l~s~s~---------~~~~~~~~~~~~  208 (365)
T 4h5i_A          144 EGTVAAIASSK-----VPAIMRIIDPSDLTEKFEIETRGE-VKDLHFSTDGKVVAYITG---------SSLEVISTVTGS  208 (365)
T ss_dssp             TSSCEEEEESC-----SSCEEEEEETTTTEEEEEEECSSC-CCEEEECTTSSEEEEECS---------SCEEEEETTTCC
T ss_pred             CCCEEEEEECC-----CCCEEEEeECCCCcEEEEeCCCCc-eEEEEEccCCceEEeccc---------eeEEEEEeccCc
Confidence            55655544321     123578899988765543221111 111122235666666542         145677777766


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeecccccccCCCC--cEEEE-eCCeE
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWRG--PVAAM-DEEVL  298 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~~--~~~~~-~~~~l  298 (387)
                          -............ -......-+|+..+.+..+    ..+..+|...............+...  .++++ .+|++
T Consensus       209 ----~~~~~~~~~~~~~-v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          209 ----CIARKTDFDKNWS-LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             ----EEEEECCCCTTEE-EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             ----ceeeeecCCCCCC-EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence                4332211111110 0022234477777665544    24566776665554332111111111  22333 36788


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEcccc-ccccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ++.++.++.|.+||.++.+  .+... .........+  .-+|+.++.|+....|-++|+..+
T Consensus       284 lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             eEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            8888888999999998764  22221 2223333333  447888888888899999998643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.37  E-value=1.4  Score=39.11  Aligned_cols=182  Identities=12%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEecc-CCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPI-CRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~-t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      .++.||+... .       ..++.||+. ...|+.-.+.+  . ..+.+.. ++.||+.. .+        ..+..||+.
T Consensus       106 ~~~~l~v~t~-~-------~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~vgt-~~--------~~l~~~d~~  165 (330)
T 3hxj_A          106 FEDILYVTSM-D-------GHLYAINTDGTEKWRFKTKKA--I-YATPIVSEDGTIYVGS-ND--------NYLYAINPD  165 (330)
T ss_dssp             ETTEEEEECT-T-------SEEEEECTTSCEEEEEECSSC--C-CSCCEECTTSCEEEEC-TT--------SEEEEECTT
T ss_pred             ECCEEEEEec-C-------CEEEEEcCCCCEEEEEcCCCc--e-eeeeEEcCCCEEEEEc-CC--------CEEEEECCC
Confidence            4777777432 1       357889987 34566532211  1 1122333 67787742 11        267888887


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCC-CceeecccccccCCCCcEEEEe-CCeEEE
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVA-NTWDDMREGMVRGWRGPVAAMD-EEVLYG  300 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~-~~W~~~~~~~~~~~~~~~~~~~-~~~ly~  300 (387)
                       ++..  |.....  .....   .....-+|.+|+..   ..+.+||... ..|+.....   . ...+++.. +|.||+
T Consensus       166 -g~~~--~~~~~~--~~~~~---~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~---~-~~~~~~~~~~g~l~v  230 (330)
T 3hxj_A          166 -GTEK--WRFKTN--DAITS---AASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGY---W-TVTRPAISEDGTIYV  230 (330)
T ss_dssp             -SCEE--EEEECS--SCCCS---CCEECTTCCEEEES---SSEEEECTTSCEEEEECCSS---C-CCSCCEECTTSCEEE
T ss_pred             -CCEe--EEEecC--CCcee---eeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCC---c-ceeceEECCCCeEEE
Confidence             4422  665432  11111   11222478888776   4789999442 257654321   1 11223333 457877


Q ss_pred             EeCCCCeEEEEeCCCCc-eeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEeC
Q 016552          301 IDENSCTLSRYDEVMDD-WKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVDT  368 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~-W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~~  368 (387)
                      .. ..+.+++||+.+.. |.. ....... ...+..-+|.|++. ..++.++.+|....   ..|....
T Consensus       231 ~t-~~~gl~~~~~~g~~~~~~-~~~~~~~-~~~~~~~~g~l~v~-t~~ggl~~~d~~g~---~~~~~~~  292 (330)
T 3hxj_A          231 TS-LDGHLYAINPDGTEKWRF-KTGKRIE-SSPVIGNTDTIYFG-SYDGHLYAINPDGT---EKWNFET  292 (330)
T ss_dssp             EE-TTTEEEEECTTSCEEEEE-ECSSCCC-SCCEECTTSCEEEE-CTTCEEEEECTTSC---EEEEEEC
T ss_pred             Ec-CCCeEEEECCCCCEeEEe-eCCCCcc-ccceEcCCCeEEEe-cCCCCEEEECCCCc---EEEEEEc
Confidence            64 35789999876554 443 2211111 12222336777765 44557888886432   3566543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.34  E-value=1  Score=44.23  Aligned_cols=188  Identities=12%  Similarity=-0.022  Sum_probs=93.7

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEE-EeCC-EEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAG-CSRG-AVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+||...       ....+.++|+.|++-..  .++....-+..+ .-++ .+||.+ .+        ..+.+||..+
T Consensus       166 ~~~~~V~~~-------~~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~-~d--------g~V~viD~~~  227 (567)
T 1qks_A          166 ENLFSVTLR-------DAGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIG-RD--------GKVNMIDLWM  227 (567)
T ss_dssp             GGEEEEEET-------TTTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEE-TT--------SEEEEEETTS
T ss_pred             CceEEEEeC-------CCCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEc-CC--------CeEEEEECCC
Confidence            345666643       22478999999886543  122222212222 2244 678764 21        3789999862


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE-----CC-EEEEEeeeCCeEEEEECCCCcee-eccc-ccc-cC-----C-CC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW-----KG-KLCLVNVKGAEGAVYDVVANTWD-DMRE-GMV-RG-----W-RG  288 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~-----~g-~lyv~gg~~~~i~~yD~~~~~W~-~~~~-~~~-~~-----~-~~  288 (387)
                      .+    -..+..++.+...   ...++-     || .+|+.+...+.+.++|..+.+=. .++. .++ .+     . +.
T Consensus       228 ~t----~~~v~~i~~G~~P---~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          228 KE----PTTVAEIKIGSEA---RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             SS----CCEEEEEECCSEE---EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             CC----CcEeEEEecCCCC---ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence            23    2223333322221   223333     56 57887777788999997765321 1221 011 00     0 11


Q ss_pred             cEEE-EeCCeEEEE-eCCCCeEEEEeCCCCceeEccccccccCceE-EEEeCCeEEE-EecCCCeEEEEeccCC
Q 016552          289 PVAA-MDEEVLYGI-DENSCTLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGRVCA-VCENGGGIVVVDVKAA  358 (387)
Q Consensus       289 ~~~~-~~~~~ly~~-~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~i~v-~gg~~~~i~~~d~~~~  358 (387)
                      ..++ ..++..+++ -..+|.|+..|.+......+...+..+..+. ....+|+.++ .....+.|.++|..+.
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            1122 223333333 3457899999988766555444332222222 2233455443 3344677888887754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.25  E-value=2.4  Score=42.17  Aligned_cols=173  Identities=10%  Similarity=-0.008  Sum_probs=97.9

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ++.+.|+.+..-..+.+++.-+...+.+.  .+++||+.--.        ...+..+++....    .+.+.......  
T Consensus        16 ~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~--------~~~I~r~~~~g~~----~~~v~~~g~~~--   81 (628)
T 4a0p_A           16 DIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS--------LKTISRAFMNGSA----LEHVVEFGLDY--   81 (628)
T ss_dssp             EEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCS----CEEEECSSCSC--
T ss_pred             cEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC--------CCeEEEEECCCCC----cEEEEeCCCCC--
Confidence            34555665543333323332222222332  25799998432        2377888887665    55543222111  


Q ss_pred             ccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EEEEe--CCeEEEEe-CCCCeEEEEeCCCC
Q 016552          243 REAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VAAMD--EEVLYGID-ENSCTLSRYDEVMD  316 (387)
Q Consensus       243 ~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~~--~~~ly~~~-~~~~~l~~yd~~~~  316 (387)
                      +  ...++  .+++||+.......|+++|+....=+.+..   .....| .+++.  +|.||+.+ +..++|++.+++..
T Consensus        82 P--~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A           82 P--EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             C--CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             c--ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            0  11222  468999987766789999987553222211   111222 44454  68999998 34678999999887


Q ss_pred             ceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          317 DWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       317 ~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .-+.+..  ....+.+++.  .+++||+.=.....|..+|++..
T Consensus       157 ~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          157 ERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             SCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            6555432  2233333333  25788888767778888888743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.25  E-value=1.9  Score=42.85  Aligned_cols=183  Identities=10%  Similarity=-0.085  Sum_probs=102.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCc-eeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRT-WTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~-W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      ++.||+.--       ....++++++.... +..+..-... .-...++  .+++||+.-..        ...++++|..
T Consensus        51 ~~~ly~sD~-------~~~~I~r~~~~g~~~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~--------~~~I~v~~~d  114 (619)
T 3s94_A           51 HGLIYWSDV-------SEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACDWLGEKLYWTDSE--------TNRIEVSNLD  114 (619)
T ss_dssp             TTEEEEEET-------TTTEEEEEEC-----CEEEECSSCS-CEEEEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             CCEEEEEEC-------CCCeEEEEEccCCCceEEEEeCCCC-CcCeEEEEecCCEEEEEeCC--------CCEEEEEECC
Confidence            678888632       23467788876543 2322111111 1122333  36899998432        2478999987


Q ss_pred             CCccccCeEEc--CCCCCCCccccceEEEE--ECCEEEEEee-eCCeEEEEECCCCceeecccccccCCCC-cEEEEe--
Q 016552          223 NGEKNSRWEKT--GELKDGRFSREAIDAVG--WKGKLCLVNV-KGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAMD--  294 (387)
Q Consensus       223 ~~~~~~~W~~~--~~~p~~~~~~~~~~~~~--~~g~lyv~gg-~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~~--  294 (387)
                      ...    =..+  ..+..|+      ..++  .+|.||+..- ....++..++....-..+-.   ..... .++++.  
T Consensus       115 G~~----~~~l~~~~l~~P~------~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~---~~~~~P~Glald~~  181 (619)
T 3s94_A          115 GSL----RKVLFWQELDQPR------AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN---SEIYWPNGLTLDYE  181 (619)
T ss_dssp             SCS----CEEEECSSCSCCC------CEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC---SSCSSEEEEEEETT
T ss_pred             CCC----EEEEEeCCCCCCc------eEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe---CCCCCCcEEEEEcc
Confidence            654    2223  2333232      1222  3689998863 23578888887543333321   01111 234444  


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++||+.+...+.|+++|.+...=+.+.. .....++++...++.||+.-..+..|..+|..++
T Consensus       182 ~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          182 EQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             TTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred             CCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence            68999999888899999998753222221 1234456777778899998667788999988754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.55  Score=49.01  Aligned_cols=185  Identities=12%  Similarity=0.044  Sum_probs=95.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.|+.+       ..+.+||..+..-...  +.........+...+++.+.|+.+.        .+.+||..+.+
T Consensus        28 dg~~lAsgs~D-------g~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~D~--------~v~lWd~~~~~   90 (902)
T 2oaj_A           28 TQNLLAIATVT-------GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINAKD--------TVYVLSLYSQK   90 (902)
T ss_dssp             TTTEEEEEETT-------SEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEETTC--------EEEEEETTTCS
T ss_pred             CCCEEEEEeCC-------CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEECcC--------eEEEEECCCCc
Confidence            34555555532       2466677655433221  1111112222222355455555433        78899998876


Q ss_pred             cccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccc-------ccccCC--CCcEEEEe
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMRE-------GMVRGW--RGPVAAMD  294 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-------~~~~~~--~~~~~~~~  294 (387)
                          -...-..+.      ...++.  -++...+.+..+..+.+||..+..-.....       ....+.  ...+++..
T Consensus        91 ----~~~~~~~~~------~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s  160 (902)
T 2oaj_A           91 ----VLTTVFVPG------KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN  160 (902)
T ss_dssp             ----EEEEEECSS------CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred             ----EEEEEcCCC------CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence                332111111      122222  256666666666789999998876421100       011111  12344444


Q ss_pred             --CCeEEEEeCCCCeEEEEeCCCCceeEccccc-----c-----------ccCceEEE--EeCCeEEEEecCCCeEEEEe
Q 016552          295 --EEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-----L-----------LKGARHAA--AGGGRVCAVCENGGGIVVVD  354 (387)
Q Consensus       295 --~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-----~-----------~~~~~~~~--~~~g~i~v~gg~~~~i~~~d  354 (387)
                        ++.+++.+..++.+ .||.+++.-...-...     .           .......+  ..+|+.++.|+....|.+||
T Consensus       161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence              23566777778889 9999887543321110     0           01222223  33688888888888899999


Q ss_pred             ccCC
Q 016552          355 VKAA  358 (387)
Q Consensus       355 ~~~~  358 (387)
                      +.+.
T Consensus       240 ~~~g  243 (902)
T 2oaj_A          240 ANSG  243 (902)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            8754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.24  E-value=1.1  Score=44.37  Aligned_cols=185  Identities=8%  Similarity=-0.103  Sum_probs=94.4

Q ss_pred             CccEEEeccC------CceeeCC-CCCCCCcceeEEEeCCE-EEEEecCCCCCCCCCcceEEEEECC-CCccccCeEEcC
Q 016552          164 TRPLIFDPIC------RTWTFGP-ELVTPRRWCAAGCSRGA-VYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTG  234 (387)
Q Consensus       164 ~~~~vyd~~t------~~W~~l~-~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~-~~~~~~~W~~~~  234 (387)
                      ..++++|..+      ++-+.+. .-.. ........-+|+ |+........ .......++++|.. ++... ....+.
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~-~~~~~~~i~~~d~~~~g~~~-~~~~l~  237 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPR-MPWEGTELKTARVTEDGRFA-DTRTLL  237 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTC-CTTTCEEEEEEEECTTSCEE-EEEEEE
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCC-CCCCCcEEEEEEECCCCccc-ccEEeC
Confidence            4689999988      6766665 3221 111112223554 4444322110 01123478999998 56300 033333


Q ss_pred             CCCCCCccccceEEE-EECCEEEEEeeeC--CeEEEEECCCCceeeccccccc----CCC--CcEEEEe-CCeEEEEeCC
Q 016552          235 ELKDGRFSREAIDAV-GWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVR----GWR--GPVAAMD-EEVLYGIDEN  304 (387)
Q Consensus       235 ~~p~~~~~~~~~~~~-~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~----~~~--~~~~~~~-~~~ly~~~~~  304 (387)
                      .-....    ....+ .-||++|+.+..+  ..++.+|+.++++..+......    .|.  ...+++. ++++++....
T Consensus       238 ~~~~~~----~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          238 GGPEEA----IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             EETTBC----EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             CCCCce----EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence            111010    01122 2378888776554  3789999988888876532111    111  1234443 6777777655


Q ss_pred             CC--eEEEEeCCCCceeEccccccccCceEE-EEeCCeEEEEecCC---CeEEEEeccCC
Q 016552          305 SC--TLSRYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENG---GGIVVVDVKAA  358 (387)
Q Consensus       305 ~~--~l~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~g~i~v~gg~~---~~i~~~d~~~~  358 (387)
                       +  .|+.+|.+++..+.+......  ...+ ..-++.++++....   ..++.+|..++
T Consensus       314 -~~~~l~~~d~~~~~~~~l~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          314 -GAAVLGILDPESGELVDAAGPWTE--WAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             -SSCEEEEEETTTTEEEECCSSCCE--EEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             -CccEEEEEECCCCcEEEecCCCCe--EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence             5  467779888876665432111  1122 23456666665432   36777776544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.18  E-value=1.7  Score=39.09  Aligned_cols=183  Identities=8%  Similarity=0.031  Sum_probs=86.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++.+++.|+.+       ..+.+||..+++-..  .+.... ...+.+ .-+++.++.||.+.        .+.+||...
T Consensus        87 ~~~~l~s~s~D-------~~v~lwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~l~s~~~d~--------~i~~wd~~~  149 (343)
T 2xzm_R           87 ENCFAISSSWD-------KTLRLWDLRTGTTYK--RFVGHQSEVYSVAFSPDNRQILSAGAER--------EIKLWNILG  149 (343)
T ss_dssp             STTEEEEEETT-------SEEEEEETTSSCEEE--EEECCCSCEEEEEECSSTTEEEEEETTS--------CEEEEESSS
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCcEEE--EEcCCCCcEEEEEECCCCCEEEEEcCCC--------EEEEEeccC
Confidence            34556666543       357889988775432  111111 111122 22566667776544        678888764


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEE--C----------CEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGW--K----------GKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVA  291 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~----------g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~  291 (387)
                      ..    -..........   ....++.+  +          +.+++.++.+..+.+||.....=..+..   ......++
T Consensus       150 ~~----~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~  219 (343)
T 2xzm_R          150 EC----KFSSAEKENHS---DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA---HESNVNHL  219 (343)
T ss_dssp             CE----EEECCTTTSCS---SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC---CSSCEEEE
T ss_pred             Cc----eeeeecccCCC---ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC---ccccceEE
Confidence            43    22222111110   01112222  1          1455566666788889843321111111   00011223


Q ss_pred             EE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          292 AM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       292 ~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +. .++++++.++.++.|..||.....-. ..... ......  ...-+++++. ++....+.+||+.+.
T Consensus       220 ~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~~-~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          220 SISPNGKYIATGGKDKKLLIWDILNLTYP-QREFD-AGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQ  286 (343)
T ss_dssp             EECTTSSEEEEEETTCEEEEEESSCCSSC-SEEEE-CSSCEEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCccc-ceeec-CCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence            33 35677777777899999998433211 01110 111111  2223455544 455566889988754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.04  E-value=1.7  Score=39.06  Aligned_cols=145  Identities=10%  Similarity=-0.004  Sum_probs=81.9

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE-ECCEEEEEeeeCCeEEEEECCCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      +++||++--.        ...+..+++...... .+.....+..+.     ..++- .++.||+.......++++|+...
T Consensus        46 ~~~lyw~D~~--------~~~I~r~~~~g~~~~-~~~~~~~l~~p~-----glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           46 HGLIYWSDVS--------EEAIKRTEFNKTESV-QNVVVSGLLSPD-----GLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             GTEEEEEETT--------TTEEEEEETTSSSCC-CEEEEECCSCCC-----EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCEEEEEECC--------CCcEEEEEccCCCce-EEEEcCCCCCcc-----EEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            5789987432        236788887655300 022222222111     12222 47899998766678999998765


Q ss_pred             ceeecccccccCCCCc-EEEE--eCCeEEEEeC-CCCeEEEEeCCCCceeEccccccccCceEEEE--eCCeEEEEecCC
Q 016552          274 TWDDMREGMVRGWRGP-VAAM--DEEVLYGIDE-NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENG  347 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~-~~~~--~~~~ly~~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~  347 (387)
                      .=+.+..   .....+ .+++  .+|.||+.+. ..+.|++++++...=+.+.. .....+..++.  .+++||+.=...
T Consensus       112 ~~~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          112 LRKVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             SCEEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCEEEEEECCC
Confidence            3332211   111122 3444  3689999884 35789999998654333321 12222333333  367888886667


Q ss_pred             CeEEEEeccC
Q 016552          348 GGIVVVDVKA  357 (387)
Q Consensus       348 ~~i~~~d~~~  357 (387)
                      ..|..+|.+.
T Consensus       188 ~~I~~~d~dG  197 (318)
T 3sov_A          188 NFIHKSNLDG  197 (318)
T ss_dssp             TEEEEEETTS
T ss_pred             CEEEEEcCCC
Confidence            7788888764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.87  E-value=2.2  Score=38.69  Aligned_cols=186  Identities=13%  Similarity=0.064  Sum_probs=96.9

Q ss_pred             CccEEEeccCCceeeCCCCCC------CCcc-eeEEE----eCCEEEEEecCCCCC-----CCCCcceEEEEECC---CC
Q 016552          164 TRPLIFDPICRTWTFGPELVT------PRRW-CAAGC----SRGAVYVASGIGSQF-----SSDVAKSVEKWDLM---NG  224 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~------~r~~-~~~~~----~~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~---~~  224 (387)
                      ..+.++|+.++.-.++ ..+.      +... .....    -+++|+|+.-....+     +....+.+.+||+.   ++
T Consensus        35 g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg  113 (334)
T 2p9w_A           35 GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS  113 (334)
T ss_dssp             TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC
T ss_pred             CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC
Confidence            4688899986654443 2221      2222 23333    246888863211111     11124678999988   66


Q ss_pred             ccccCeEEc-CCCCCC-------CccccceEEEEE--CCEEEEEeeeC-CeEEEEECCCC---ceeecccccccCCC-Cc
Q 016552          225 EKNSRWEKT-GELKDG-------RFSREAIDAVGW--KGKLCLVNVKG-AEGAVYDVVAN---TWDDMREGMVRGWR-GP  289 (387)
Q Consensus       225 ~~~~~W~~~-~~~p~~-------~~~~~~~~~~~~--~g~lyv~gg~~-~~i~~yD~~~~---~W~~~~~~~~~~~~-~~  289 (387)
                      +..  |..- +.....       .+.  .+.-+++  +|.+||.+..+ ..|+.+|+...   .|-.-.. ...... -.
T Consensus       114 ~~~--~~~dL~~~~~~~~~~~g~~~~--~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~-~~~~~~G~n  188 (334)
T 2p9w_A          114 KPV--WSVNFEKVQDEFEKKAGKRPF--GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESG-NGGQRPGYS  188 (334)
T ss_dssp             CCS--EEEESHHHHHHHHHHHSSCCE--EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCC-CSSSCCSCS
T ss_pred             CEE--EEecCcccccccccccccccc--CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCC-CcccccCcc
Confidence            533  5532 111100       111  1223333  57899988888 89999999865   2532221 111122 23


Q ss_pred             EEEEe-CC-eEEEEeCCCCeEEEEeCCCCceeEcccc-----ccccCceE--EEEeCCeEEEEecCCCeEEEEecc
Q 016552          290 VAAMD-EE-VLYGIDENSCTLSRYDEVMDDWKEVVKS-----DLLKGARH--AAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       290 ~~~~~-~~-~ly~~~~~~~~l~~yd~~~~~W~~v~~~-----~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      .+++. +| .|++.+. .+.|+++|..+....++...     ......-.  ..-.+|++++++.....+.++...
T Consensus       189 GIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~  263 (334)
T 2p9w_A          189 GITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSW  263 (334)
T ss_dssp             EEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECS
T ss_pred             eEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECC
Confidence            45555 44 5555555 88999999885433122211     11222222  234799998887655555555554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=94.79  E-value=0.2  Score=44.89  Aligned_cols=105  Identities=13%  Similarity=0.017  Sum_probs=61.3

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCceeEcccccc---
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSRYDEVMDDWKEVVKSDL---  326 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~---  326 (387)
                      ++++|+.++....+.++|+.+++....-. .+.......+++. ++ .+|+.+...+.|++||+++.+-......+.   
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEe-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            67888888777899999999886532211 1110012233332 34 588887667899999999876543222211   


Q ss_pred             --ccCc-eEEEEeCCeEEEEecC------------CCeEEEEeccC
Q 016552          327 --LKGA-RHAAAGGGRVCAVCEN------------GGGIVVVDVKA  357 (387)
Q Consensus       327 --~~~~-~~~~~~~g~i~v~gg~------------~~~i~~~d~~~  357 (387)
                        .... .....-+|+.++++..            ...+.++|+.+
T Consensus        89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B           89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred             cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence              1111 2233345654444442            37899999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=94.79  E-value=0.84  Score=42.46  Aligned_cols=104  Identities=9%  Similarity=0.018  Sum_probs=58.2

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC--ceeecccc--cccCCC--CcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCce-----
Q 016552          252 KGKLCLVNVKGAEGAVYDVVAN--TWDDMREG--MVRGWR--GPVAAMD-EE-VLYGIDENSCTLSRYDEVMDDW-----  318 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~--~~~~~~--~~~~~~~-~~-~ly~~~~~~~~l~~yd~~~~~W-----  318 (387)
                      ++++++.+ .+..+.+||+.+.  .+..+...  ...+..  ..+++.. ++ .+++.++.++.|..||..+..-     
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            56666665 5678999999843  23322100  011111  2233333 33 6777777788999999988753     


Q ss_pred             eEccccccc---------cCceEEE--EeCCeEEEEecCCCeEEEEeccC
Q 016552          319 KEVVKSDLL---------KGARHAA--AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       319 ~~v~~~~~~---------~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      ..+......         ......+  ..+|++++.++. ..+.+||+.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            222211100         0122222  336778777777 8999999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.79  E-value=0.19  Score=50.91  Aligned_cols=170  Identities=11%  Similarity=-0.004  Sum_probs=90.6

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECCC----CccccCeEEcC--CC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLMN----GEKNSRWEKTG--EL  236 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~~~~~W~~~~--~~  236 (387)
                      .+.++++.+.....+.+...  ...+.+.  .+++||++--.        ...|.++++..    ..    -..+.  .+
T Consensus       387 ~I~~id~~~~~~~~~~~~~~--~p~gla~d~~~~~Ly~sD~~--------~~~I~~~~~~g~~~~~~----~~~~i~~~~  452 (699)
T 1n7d_A          387 EVRKMTLDRSEYTSLIPNLR--NVVALDTEVASNRIYWSDLS--------QRMICSTQLDRAHGVSS----YDTVISRDI  452 (699)
T ss_dssp             C-CEECTTSCCEECCSCCCT--TCCCCEEETTTTEEEECCTT--------TTSBEEEESCCCCC-CC----CCCBCCSCC
T ss_pred             ceEEEeCCCCcceeeeccCc--ceEEEccccccCeEEEEecC--------CCeEEEEecCCCCCCcc----eEEEEeCCC
Confidence            45677777776665432211  1122222  36789986322        23677888765    11    11111  11


Q ss_pred             CCCCccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCC-cEEEE--eCCeEEEEeCCC-CeEEEE
Q 016552          237 KDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRG-PVAAM--DEEVLYGIDENS-CTLSRY  311 (387)
Q Consensus       237 p~~~~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~ly~~~~~~-~~l~~y  311 (387)
                      ..+    . ..++- .++.||+.......|.++|+....-..+..   ..... ..+++  .++.||+.+... +.|+++
T Consensus       453 ~~P----~-glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          453 QAP----D-GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             --C----C-CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred             CCc----c-eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence            111    1 11221 468899986655789999988664433321   11111 23444  367899887433 689999


Q ss_pred             eCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccC
Q 016552          312 DEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++...-+.+... .+..+.+++.  .+++||+.-.....|.++|++.
T Consensus       525 ~~dG~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          525 GLNGVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CSSSCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             eCCCCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            8876544333221 1222332333  3578888876677888888864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.70  E-value=0.83  Score=41.11  Aligned_cols=138  Identities=9%  Similarity=-0.036  Sum_probs=76.3

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ++.+|+++...        ..+..||+.+++    ..... .+.. .   ...+..-+|++++..  ...+..||+.+++
T Consensus        60 ~~~l~~~d~~~--------~~i~~~d~~~~~----~~~~~-~~~~-v---~~i~~~~dg~l~v~~--~~gl~~~d~~~g~  120 (326)
T 2ghs_A           60 SGTAWWFNILE--------RELHELHLASGR----KTVHA-LPFM-G---SALAKISDSKQLIAS--DDGLFLRDTATGV  120 (326)
T ss_dssp             TTEEEEEEGGG--------TEEEEEETTTTE----EEEEE-CSSC-E---EEEEEEETTEEEEEE--TTEEEEEETTTCC
T ss_pred             CCEEEEEECCC--------CEEEEEECCCCc----EEEEE-CCCc-c---eEEEEeCCCeEEEEE--CCCEEEEECCCCc
Confidence            36788875432        268899998876    55443 2211 1   122334578888765  2469999999988


Q ss_pred             eeecccccccCCC---CcEEEE-eCCeEEEEeC------CCCeEEEEeCCCCceeEccccccccCceEEE-EeCC-eEEE
Q 016552          275 WDDMREGMVRGWR---GPVAAM-DEEVLYGIDE------NSCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGG-RVCA  342 (387)
Q Consensus       275 W~~~~~~~~~~~~---~~~~~~-~~~~ly~~~~------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g-~i~v  342 (387)
                      .+.+... .....   ...+++ .+|++|+...      ..+.|+.||  +++...+..  .......++ .-+| .+|+
T Consensus       121 ~~~~~~~-~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          121 LTLHAEL-ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             EEEEECS-STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEE
T ss_pred             EEEEeeC-CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEE
Confidence            7765431 11111   112222 3567887542      135789998  455544321  111122222 2345 4677


Q ss_pred             EecCCCeEEEEecc
Q 016552          343 VCENGGGIVVVDVK  356 (387)
Q Consensus       343 ~gg~~~~i~~~d~~  356 (387)
                      .......|++||..
T Consensus       196 ~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          196 VDTKVNRLMRVPLD  209 (326)
T ss_dssp             EETTTCEEEEEEBC
T ss_pred             EECCCCEEEEEEcc
Confidence            65556788888875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=94.66  E-value=2.6  Score=39.09  Aligned_cols=105  Identities=10%  Similarity=0.147  Sum_probs=59.6

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC------ceeecc-----cc-cccCCCCcEEEEeCCeEEEEeCC---------CCeEEE
Q 016552          252 KGKLCLVNVKGAEGAVYDVVAN------TWDDMR-----EG-MVRGWRGPVAAMDEEVLYGIDEN---------SCTLSR  310 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~------~W~~~~-----~~-~~~~~~~~~~~~~~~~ly~~~~~---------~~~l~~  310 (387)
                      +|+++++... ..+.++|..++      .|....     .. .+.++...++--.+++||+....         ..+|++
T Consensus       237 dG~~~~vs~~-g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v  315 (386)
T 3sjl_D          237 AGRLVWPTYT-GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  315 (386)
T ss_dssp             TTEEEEEBTT-SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCcEEEEeCC-CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence            6776655443 46888888655      354111     11 12222222222346799996421         246999


Q ss_pred             EeCCCCceeEccccccccCceEEEEeCCe--EEEEecCCCeEEEEeccCC
Q 016552          311 YDEVMDDWKEVVKSDLLKGARHAAAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       311 yd~~~~~W~~v~~~~~~~~~~~~~~~~g~--i~v~gg~~~~i~~~d~~~~  358 (387)
                      +|+++.+-..--.... ......+.-+++  +|+..+.++.+.++|..+.
T Consensus       316 iD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          316 LDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             EETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            9998875544222222 112334445665  6666677899999999976

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.59  E-value=0.59  Score=44.22  Aligned_cols=144  Identities=13%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeC----CeEEEEE
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKG----AEGAVYD  269 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~----~~i~~yD  269 (387)
                      ++.||++--       .  ..+.++|+.++.    ...+...    .......++--+|. ||+.....    ..+..++
T Consensus       149 ~g~Lyv~d~-------~--~~I~~id~~~~~----v~~~~~~----~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          149 HNHLYLVGE-------Q--HPTRLIDFEKEY----VSTVYSG----LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             EEEEEEEEB-------T--EEEEEEETTTTE----EEEEECC----CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCeEEEEeC-------C--CcEEEEECCCCE----EEEEecC----CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            478998732       1  578899999988    7766431    11111222223455 99887533    2455666


Q ss_pred             CCCCceeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE-EeCCe-EEEEec
Q 016552          270 VVANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGGR-VCAVCE  345 (387)
Q Consensus       270 ~~~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g~-i~v~gg  345 (387)
                      .. +.|..... .........+++.  +|.||+.+...+.|++||+++..-..+...+....+..++ .-+|+ ||+.-.
T Consensus       212 ~~-g~~~~~~~-l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          212 RE-SGFKVITE-LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             GG-GTSCSEEE-EEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             CC-Cceeeeee-eccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            53 33431111 1111112234443  6789999877789999999887553443333222233333 33555 899877


Q ss_pred             CCCeEEEEeccC
Q 016552          346 NGGGIVVVDVKA  357 (387)
Q Consensus       346 ~~~~i~~~d~~~  357 (387)
                      .+..|..+|.+.
T Consensus       290 ~~~~I~~~~~d~  301 (430)
T 3tc9_A          290 NQHYILRSDYDW  301 (430)
T ss_dssp             TTTEEEEEEEET
T ss_pred             CCCEEEEEeCCc
Confidence            788999988773

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.48  E-value=0.79  Score=40.69  Aligned_cols=102  Identities=7%  Similarity=-0.050  Sum_probs=58.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccc---cCCCCcEEEEeCCeEEEEeC-----------------CCCeEEEE
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMV---RGWRGPVAAMDEEVLYGIDE-----------------NSCTLSRY  311 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~---~~~~~~~~~~~~~~ly~~~~-----------------~~~~l~~y  311 (387)
                      +|++|+.......+..||+. ++.+.+.....   .......++-.+|.+|+.+.                 ..+.|+.|
T Consensus        96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            68888775444679999986 66655532111   11112233334778998531                 12469999


Q ss_pred             eCCCCceeEccccccccCceE-EEEeCCe-EEEEecC-----CCeEEEEeccC
Q 016552          312 DEVMDDWKEVVKSDLLKGARH-AAAGGGR-VCAVCEN-----GGGIVVVDVKA  357 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~-~~~~~g~-i~v~gg~-----~~~i~~~d~~~  357 (387)
                      |+++++.+.+.   ....... +..-+++ ||+....     ...|++||+..
T Consensus       175 d~~~g~~~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          175 PPDGSPLQRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             CSSSCCCEEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             cCCCCcEEEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            99888887764   1122222 2333454 6666443     26788888763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.35  E-value=1.8  Score=38.30  Aligned_cols=166  Identities=10%  Similarity=0.119  Sum_probs=82.5

Q ss_pred             cEEEeccCC-ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          166 PLIFDPICR-TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       166 ~~vyd~~t~-~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      ++.||+..+ .|+.-.  +.. .....+..++.||+... +        ..+.+||+. ++..  |......+  ..   
T Consensus        80 l~~~d~~g~~~~~~~~--~~~-~~~~~~~~~~~l~v~t~-~--------~~l~~~d~~-g~~~--~~~~~~~~--~~---  139 (330)
T 3hxj_A           80 VYAINPDGTEKWRFDT--KKA-IVSDFTIFEDILYVTSM-D--------GHLYAINTD-GTEK--WRFKTKKA--IY---  139 (330)
T ss_dssp             EEEECCCGGGGGGSCC--------CCEEEETTEEEEECT-T--------SEEEEECTT-SCEE--EEEECSSC--CC---
T ss_pred             EEEECCCCcEEEEEEC--CCC-cccCceEECCEEEEEec-C--------CEEEEEcCC-CCEE--EEEcCCCc--ee---
Confidence            888997433 354321  111 11223334888887531 1        257888887 4322  77554222  11   


Q ss_pred             ceEEEEE-CCEEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCC-ceeE
Q 016552          245 AIDAVGW-KGKLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMD-DWKE  320 (387)
Q Consensus       245 ~~~~~~~-~g~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~-~W~~  320 (387)
                       ...+.. +|.+|+.. ....+..||+... .|.....   .. ...+.+. .++.||+-.   +.+++||.... .|..
T Consensus       140 -~~~~~~~~g~l~vgt-~~~~l~~~d~~g~~~~~~~~~---~~-~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~  210 (330)
T 3hxj_A          140 -ATPIVSEDGTIYVGS-NDNYLYAINPDGTEKWRFKTN---DA-ITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNF  210 (330)
T ss_dssp             -SCCEECTTSCEEEEC-TTSEEEEECTTSCEEEEEECS---SC-CCSCCEECTTCCEEEES---SSEEEECTTSCEEEEE
T ss_pred             -eeeEEcCCCEEEEEc-CCCEEEEECCCCCEeEEEecC---CC-ceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEE
Confidence             112223 67887743 3357999999822 3654321   11 1122333 467787764   78999995432 4654


Q ss_pred             ccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          321 VVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       321 v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      ......  ....+..-+|.|++. ..+..++.+|....   ..|..
T Consensus       211 ~~~~~~--~~~~~~~~~g~l~v~-t~~~gl~~~~~~g~---~~~~~  250 (330)
T 3hxj_A          211 YAGYWT--VTRPAISEDGTIYVT-SLDGHLYAINPDGT---EKWRF  250 (330)
T ss_dssp             CCSSCC--CSCCEECTTSCEEEE-ETTTEEEEECTTSC---EEEEE
T ss_pred             ccCCcc--eeceEECCCCeEEEE-cCCCeEEEECCCCC---EeEEe
Confidence            322111  111122224566665 33456777765433   35654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=94.17  E-value=0.63  Score=41.72  Aligned_cols=137  Identities=15%  Similarity=0.045  Sum_probs=73.6

Q ss_pred             CccEEEeccCCceeeCCC-CCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICRTWTFGPE-LVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+++||+.+++.+.+.. +..+.  ..+..-++ .|||.-..        ...+.+||...... ...+....++.   
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p~--gia~~~dg~~lyv~d~~--------~~~I~~~~~~~~~~-~~~~~~~~~~g---  230 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVPG--GAEVSADSSFVLVAEFL--------SHQIVKYWLEGPKK-GTAEVLVKIPN---  230 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCCC--EEEECTTSSEEEEEEGG--------GTEEEEEESSSTTT-TCEEEEEECSS---
T ss_pred             ceEEEEeCCCCEEEEeccCCccCc--ceEECCCCCEEEEEeCC--------CCeEEEEECCCCcC-CccceEEeCCC---
Confidence            468999998887654321 12221  11222234 58887432        23788898875320 00443332321   


Q ss_pred             cccceEEEEECCEEEEEeee----------CCeEEEEECCCCceeecccccccCC-CCcEEEEeCCeEEEEeCCCCeEEE
Q 016552          242 SREAIDAVGWKGKLCLVNVK----------GAEGAVYDVVANTWDDMREGMVRGW-RGPVAAMDEEVLYGIDENSCTLSR  310 (387)
Q Consensus       242 ~~~~~~~~~~~g~lyv~gg~----------~~~i~~yD~~~~~W~~~~~~~~~~~-~~~~~~~~~~~ly~~~~~~~~l~~  310 (387)
                       +. ..++--+|.||+....          ...+.+||+....-..+...-.... ...+++..+++||+.+...+.|.+
T Consensus       231 -P~-gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          231 -PG-NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             -EE-EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEE
T ss_pred             -CC-CeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEE
Confidence             11 1122235789988654          2468999997554444432111101 123455678899998766778999


Q ss_pred             EeCCCC
Q 016552          311 YDEVMD  316 (387)
Q Consensus       311 yd~~~~  316 (387)
                      |+++.+
T Consensus       309 ~~~~~~  314 (322)
T 2fp8_A          309 LVYDKK  314 (322)
T ss_dssp             EEC---
T ss_pred             Eecccc
Confidence            997644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.12  E-value=1.7  Score=39.42  Aligned_cols=180  Identities=11%  Similarity=-0.075  Sum_probs=92.4

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEE-Ee-CC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAG-CS-RG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~-~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      ..++++|..+++.+.+...  ........ .- ++ +|++... ..  .......++++|..+..    +..+.. ..+.
T Consensus       168 ~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~-~~--~~~~~~~l~~~d~~~~~----~~~l~~-~~~~  237 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHE-GP--HDLVDARMWLVNEDGSN----VRKIKE-HAEG  237 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEEC-SC--SSSCSCCCEEEETTSCC----CEESSC-CCTT
T ss_pred             ceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEec-CC--CCCCCceEEEEECCCCc----eeEeec-cCCC
Confidence            4678899998887765432  12111122 22 34 4544432 11  11122468899998887    777654 1111


Q ss_pred             ccccceEEEEECCE-EEEEeeeC--C--eEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEeC-----------
Q 016552          241 FSREAIDAVGWKGK-LCLVNVKG--A--EGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDE-----------  303 (387)
Q Consensus       241 ~~~~~~~~~~~~g~-lyv~gg~~--~--~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~-----------  303 (387)
                      .. .......-+|+ |++.....  .  .+.++|+.+++...+.. .+ +. . ..... +|+++++..           
T Consensus       238 ~~-~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~-~-~~~s~~dg~~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          238 ES-CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PC-S-HLMSNFDGSLMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             EE-EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SE-E-EEEECSSSSEEEEEECCC--------
T ss_pred             cc-ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CC-C-CCccCCCCceEEEecCCcceeecccc
Confidence            10 00112222565 55554332  3  39999999887665543 11 11 1 22223 666666532           


Q ss_pred             -----CCCeEEEEeCCCCceeEccccccc----------cCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552          304 -----NSCTLSRYDEVMDDWKEVVKSDLL----------KGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       304 -----~~~~l~~yd~~~~~W~~v~~~~~~----------~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~  358 (387)
                           ....|+.||.+++....+...+..          .........+|+ |++.+..  ...++.+|+.+.
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                 235799999998876665433220          011223344554 5544432  356788887765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=94.10  E-value=0.73  Score=45.08  Aligned_cols=168  Identities=12%  Similarity=-0.045  Sum_probs=86.0

Q ss_pred             ccEEEec--cCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          165 RPLIFDP--ICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       165 ~~~vyd~--~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      .++..+.  .... ..+...+..+ ..+....++.++++.+...        .+.+||..+++    -..+...+.    
T Consensus        91 ~l~~~~~~~~g~~-~~l~~~~~~~-~~~~s~dg~~~~~~s~~~~--------~~~l~d~~~g~----~~~l~~~~~----  152 (582)
T 3o4h_A           91 ALFKVNTSRPGEE-QRLEAVKPMR-ILSGVDTGEAVVFTGATED--------RVALYALDGGG----LRELARLPG----  152 (582)
T ss_dssp             EEEEEETTSTTCC-EECTTSCSBE-EEEEEECSSCEEEEEECSS--------CEEEEEEETTE----EEEEEEESS----
T ss_pred             EEEEEeccCCCcc-ccccCCCCce-eeeeCCCCCeEEEEecCCC--------CceEEEccCCc----EEEeecCCC----
Confidence            4666776  3332 2443333222 2222223345555544322        23478998887    666653332    


Q ss_pred             ccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCC--eEEEEeCCC
Q 016552          243 REAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSC--TLSRYDEVM  315 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~--~l~~yd~~~  315 (387)
                        ......-||+..+.....    ..++.+|+++++++.+....  +. ....+. -+|+.++.....+  .|+.||.++
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~--~~-~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE--GS-FSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSS--CE-EEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCC--Cc-cccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence              123344577655443322    56899999999887664311  10 122222 2454444444455  799999999


Q ss_pred             CceeEccccccccCce-------EEEEeCCeEEEEecCCCeEEEEec
Q 016552          316 DDWKEVVKSDLLKGAR-------HAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~-------~~~~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      ++...+..........       ....-+|++++.+..+..+.+|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          228 GSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            8877322211100001       113456677666655566666666

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.07  E-value=4.8  Score=40.74  Aligned_cols=166  Identities=10%  Similarity=0.061  Sum_probs=89.7

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC----CCCCCC
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG----ELKDGR  240 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~----~~p~~~  240 (387)
                      .+++||+.++++..... .......+....++.|++...          .-+..||..+++    .....    .++.. 
T Consensus        83 Gl~~yd~~~~~f~~~~~-~~~~~i~~i~~~~g~lWigt~----------~Gl~~~~~~~~~----~~~~~~~~~~l~~~-  146 (758)
T 3ott_A           83 GILVYNYRADRYEQPET-DFPTDVRTMALQGDTLWLGAL----------NGLYTYQLQSRK----LTSFDTRRNGLPNN-  146 (758)
T ss_dssp             EEEEEETTTTEECCCSC-CCCSCEEEEEEETTEEEEEET----------TEEEEEETTTCC----EEEECHHHHCCSCS-
T ss_pred             CeEEEeCCCCEEECccc-CCCceEEEEEecCCcEEEEcC----------CcceeEeCCCCe----EEEeccCCCCcCCC-
Confidence            47899999998865211 111112223345778888521          146789998888    77652    12211 


Q ss_pred             ccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCC---CcEEEEe--CCeEEEEeCCCCeEEEEeC
Q 016552          241 FSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR---GPVAAMD--EEVLYGIDENSCTLSRYDE  313 (387)
Q Consensus       241 ~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~---~~~~~~~--~~~ly~~~~~~~~l~~yd~  313 (387)
                          ...+...  +|.|++...  ..+..||+.++++............   ..++...  ++.|++-.  .+.++.||+
T Consensus       147 ----~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~~Gl~~~~~  218 (758)
T 3ott_A          147 ----TIYSIIRTKDNQIYVGTY--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT--EGYLFQYFP  218 (758)
T ss_dssp             ----CEEEEEECTTCCEEEEET--TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE--EEEEEEEET
T ss_pred             ----eEEEEEEcCCCCEEEEeC--CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE--CCCCeEEcC
Confidence                1223333  578887542  3688999999887654321111111   1223333  23467643  346999999


Q ss_pred             CCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEeccC
Q 016552          314 VMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       314 ~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++++.....++... -..+.. -+|.|+|-..  .++..||..+
T Consensus       219 ~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigT~--~Gl~~~~~~~  260 (758)
T 3ott_A          219 STGQIKQTEAFHNNS-IKSLALDGNGDLLAGTD--NGLYVYHNDT  260 (758)
T ss_dssp             TTTEEEEEEEEEEEE-EEEEEECTTCCEEEEET--TEEEEECCTT
T ss_pred             CCCeEEeccCCCCCe-EEEEEEcCCCCEEEEeC--CceeEEecCC
Confidence            998887654332111 111222 2456666542  3566666654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.01  E-value=3.4  Score=37.39  Aligned_cols=115  Identities=11%  Similarity=0.072  Sum_probs=68.1

Q ss_pred             CCEEEEEeeeCCe-EEEEECCCCcee-ecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCC---ceeEcccc-
Q 016552          252 KGKLCLVNVKGAE-GAVYDVVANTWD-DMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMD---DWKEVVKS-  324 (387)
Q Consensus       252 ~g~lyv~gg~~~~-i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~---~W~~v~~~-  324 (387)
                      +|++.+.++.+.. +.++|..+++-. ++..+. ......+++. .++++++.++.++.+.+||.+..   .+..+... 
T Consensus       206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~-h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL-DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             TSSEEEEEETTCSEEEEEETTTCCEEEEEECTT-CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            6777777777776 999999876432 111000 1111223333 25677777777889999998654   33332220 


Q ss_pred             -c---------------ccc---CceEEEEeCCeEEEEecCCCeEEEEeccCCCCCCceEEe
Q 016552          325 -D---------------LLK---GARHAAAGGGRVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       325 -~---------------~~~---~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~  367 (387)
                       +               ...   ....+..-+|+.+++|...+.+.+|++.....+..|.+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~  346 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQ  346 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTEEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCceEEEe
Confidence             0               000   122233456888888887888888888866556677763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=93.99  E-value=2.9  Score=36.48  Aligned_cols=189  Identities=6%  Similarity=-0.052  Sum_probs=89.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++..++.|+.++       .+.+||..+++-...-  ............++.+.+.|+.+.        .+..++..+..
T Consensus        78 ~~~~l~sgs~Dg-------~v~iw~~~~~~~~~~~--~~h~~~~~~~~~~~~~l~s~~~~~--------~~~~~~~~~~~  140 (318)
T 4ggc_A           78 EGNYLAVGTSSA-------EVQLWDVQQQKRLRNM--TSHSARVGSLSWNSYILSSGSRSG--------HIHHHDVRVAE  140 (318)
T ss_dssp             TSSEEEEEETTS-------EEEEEETTTTEEEEEE--ECCSSCEEEEEEETTEEEEEETTS--------EEEEEETTSSS
T ss_pred             CCCEEEEEECCC-------cEEEeecCCceeEEEe--cCccceEEEeecCCCEEEEEecCC--------ceEeeecCCCc
Confidence            456677776432       5788998887643321  111122223344555666655433        44555555544


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc--EEEE--eCCeEEE-
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP--VAAM--DEEVLYG-  300 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~--~~~~--~~~~ly~-  300 (387)
                          ..... +... ...........++++.+.++.+..+.+||..+++-............++  ..+.  .++.++. 
T Consensus       141 ----~~~~~-~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          141 ----HHVAT-LSGH-SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             ----CEEEE-EECC-SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred             ----eeEEE-EcCc-cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence                22111 1000 0000122233356666666666789999998764221111011111111  1222  1333433 


Q ss_pred             EeC-CCCeEEEEeCCCCceeEccccccccCceEEEEe-CCeEEEEec-CCCeEEEEeccCC
Q 016552          301 IDE-NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~-~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~g~i~v~gg-~~~~i~~~d~~~~  358 (387)
                      ..+ ..+.+..||.....-.......... ....... ++.+++.+| ....|.+||..+.
T Consensus       215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGACLSAVDAHSQV-CSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             EECTTTCEEEEEETTTCCEEEEEECSSCE-EEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             EecCCCCEEEEEecccccccccccceeee-eeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence            333 3567999998877544332211111 1222333 344555444 3577999998854

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.85  E-value=2  Score=39.09  Aligned_cols=186  Identities=10%  Similarity=-0.072  Sum_probs=90.5

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ..++++|+.+++-+.+...+. ........- +++.+++.....  .......++.+|.....    ...+.........
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~--~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~  240 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGP--HDLVDARMWLINEDGTN----MRKVKTHAEGESC  240 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSC--TTTSSCSEEEEETTSCC----CEESCCCCTTEEE
T ss_pred             ceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecC--CCCCcceEEEEeCCCCc----eEEeeeCCCCccc
Confidence            568899999887666543221 112222222 444333322211  11123478889988777    6666532211000


Q ss_pred             ccceEEEEECCE-EEEEeeeC--C--eEEEEECCCCceeecccccc-----cCCCCcEEEEeCCeEEEEe--------CC
Q 016552          243 REAIDAVGWKGK-LCLVNVKG--A--EGAVYDVVANTWDDMREGMV-----RGWRGPVAAMDEEVLYGID--------EN  304 (387)
Q Consensus       243 ~~~~~~~~~~g~-lyv~gg~~--~--~i~~yD~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~ly~~~--------~~  304 (387)
                        ......-||+ |++.....  .  .+..+|+++++-+.+.....     ....+....-.|..|++..        ..
T Consensus       241 --~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  318 (388)
T 3pe7_A          241 --THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN  318 (388)
T ss_dssp             --EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred             --ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence              0112222665 54444332  2  39999999887655532111     0011222333344454432        22


Q ss_pred             CCeEEEEeCCCCceeEcccccc-c---------cCceEEEEeCCe-EEEEecC--CCeEEEEeccCC
Q 016552          305 SCTLSRYDEVMDDWKEVVKSDL-L---------KGARHAAAGGGR-VCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       305 ~~~l~~yd~~~~~W~~v~~~~~-~---------~~~~~~~~~~g~-i~v~gg~--~~~i~~~d~~~~  358 (387)
                      ...|+.||.+++.-..+...+. .         ........-+|+ |++.+..  ...++.+|+...
T Consensus       319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~  385 (388)
T 3pe7_A          319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPES  385 (388)
T ss_dssp             CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGG
T ss_pred             CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChh
Confidence            4579999999887666554322 0         112223445665 4444332  356788887754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.82  E-value=0.018  Score=56.87  Aligned_cols=32  Identities=13%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             CCCChHHHHHHHhhhc-C---chhhhhhhHhhhhhh
Q 016552           43 LPGLPDHIAHLCLSHV-H---PSILHNVCHSWRRLI   74 (387)
Q Consensus        43 ~~~LPddl~~~iL~rL-P---l~~~r~VcK~W~~li   74 (387)
                      ...||||++.+||.+| |   ..+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3579999999999999 6   789999999999884

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.79  E-value=2.8  Score=38.01  Aligned_cols=180  Identities=10%  Similarity=-0.066  Sum_probs=89.4

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS  242 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~  242 (387)
                      ..++++|+.+.+-+.+...+........-.-++ .|+... .+        ..+.++|..+++    =..+...+.....
T Consensus        60 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~-~~--------~~l~~~d~~~g~----~~~~~~~~~~~~~  126 (388)
T 3pe7_A           60 WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK-DG--------RNLMRVDLATLE----ENVVYQVPAEWVG  126 (388)
T ss_dssp             CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE-TT--------TEEEEEETTTCC----EEEEEECCTTEEE
T ss_pred             ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe-CC--------CeEEEEECCCCc----ceeeeechhhccc
Confidence            368999999998888765543332122223344 454443 21        267888988887    5544444432110


Q ss_pred             ccceEEEEECCEEEEEe----------------------eeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEE
Q 016552          243 REAIDAVGWKGKLCLVN----------------------VKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLY  299 (387)
Q Consensus       243 ~~~~~~~~~~g~lyv~g----------------------g~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly  299 (387)
                       .....+.-++++++..                      .....+..+|+.+++-..+... ......+...- .+.+|.
T Consensus       127 -~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~sp~dg~~l~  204 (388)
T 3pe7_A          127 -YGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQWLGHPIYRPYDDSTVA  204 (388)
T ss_dssp             -EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEEEEE
T ss_pred             -ccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-CccccccEECCCCCCEEE
Confidence             0000112244443311                      0114688899988865544321 11101111112 233444


Q ss_pred             EEeCC-----CCeEEEEeCCCCceeEccccccc-cCceEEEEeCCe-EEEEec--CCC--eEEEEeccCC
Q 016552          300 GIDEN-----SCTLSRYDEVMDDWKEVVKSDLL-KGARHAAAGGGR-VCAVCE--NGG--GIVVVDVKAA  358 (387)
Q Consensus       300 ~~~~~-----~~~l~~yd~~~~~W~~v~~~~~~-~~~~~~~~~~g~-i~v~gg--~~~--~i~~~d~~~~  358 (387)
                      +....     ...|+.+|.++.....+...... ........-+|+ |+.++.  +..  .++++|+.++
T Consensus       205 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          205 FCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             EEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            43321     23799999988776665542211 111222334565 544432  222  3899998865

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.78  E-value=2.6  Score=38.25  Aligned_cols=144  Identities=10%  Similarity=-0.069  Sum_probs=75.7

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcce-eEE-EeCCE-EEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWC-AAG-CSRGA-VYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR  240 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~-~~~-~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~  240 (387)
                      ..++++|..+..++.+.. ..+.... ..+ .-+++ |++.+....    .....+.++|..+++    ...+..++.  
T Consensus       216 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~~g~----~~~l~~~~~--  284 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKG----QTDRVIYKANPETLE----NEEVMVMPP--  284 (396)
T ss_dssp             CCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETT----TCCEEEEEECTTTCC----EEEEEECCS--
T ss_pred             ceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCC----CccceEEEEECCCCC----eEEeeeCCC--
Confidence            578999998888887765 2111111 112 22454 544432211    112358999999888    766654431  


Q ss_pred             ccccceEEEEE-CCEEEEEeee----------------CCeEEEEECCCCceeeccccccc----------CCCCcEEEE
Q 016552          241 FSREAIDAVGW-KGKLCLVNVK----------------GAEGAVYDVVANTWDDMREGMVR----------GWRGPVAAM  293 (387)
Q Consensus       241 ~~~~~~~~~~~-~g~lyv~gg~----------------~~~i~~yD~~~~~W~~~~~~~~~----------~~~~~~~~~  293 (387)
                      .    .....- +|++++..+.                ...++.+|+.+++...+......          ....+....
T Consensus       285 ~----~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~  360 (396)
T 3c5m_A          285 C----SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP  360 (396)
T ss_dssp             E----EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred             C----CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc
Confidence            1    122233 7876665431                15789999988876655431110          011122222


Q ss_pred             eCCeEEEEeCCC--CeEEEEeCCCCceeEcc
Q 016552          294 DEEVLYGIDENS--CTLSRYDEVMDDWKEVV  322 (387)
Q Consensus       294 ~~~~ly~~~~~~--~~l~~yd~~~~~W~~v~  322 (387)
                      .+..|++.....  ..|+.+|..+..+..+.
T Consensus       361 dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~  391 (396)
T 3c5m_A          361 NDDGVLFTSDFEGVPAIYIADVPESYKHLEH  391 (396)
T ss_dssp             TSSEEEEEECTTSSCEEEEEECCTTCC----
T ss_pred             CCCeEEEEecCCCCceEEEEEEccccccccc
Confidence            344566655433  35888888887776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=93.65  E-value=5.1  Score=39.54  Aligned_cols=145  Identities=12%  Similarity=0.005  Sum_probs=80.9

Q ss_pred             CccEEEecc-CC---ceeeCCCCCCCCcceeEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCC
Q 016552          164 TRPLIFDPI-CR---TWTFGPELVTPRRWCAAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKD  238 (387)
Q Consensus       164 ~~~~vyd~~-t~---~W~~l~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~  238 (387)
                      ..++++|.. ++   ..+.+..-.. ......+ .-+|++|+.+..+.      ...++.+|..+++    +..+.....
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~spdg~l~~~~~~~~------~~~l~~~~~~~~~----~~~l~~~~~  285 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPE-EAIAQAEWAPDGSLIVATDRTG------WWNLHRVDPATGA----ATQLCRREE  285 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEECTTSCEEEEECTTS------SCEEEEECTTTCC----EEESSCCSS
T ss_pred             cEEEEEEECCCCcccccEEeCCCCC-ceEcceEECCCCeEEEEECCCC------CeEEEEEECCCCc----eeecccccc
Confidence            468999998 56   4444432111 1111222 23677777665432      2378889988888    888765332


Q ss_pred             CC----ccccceEEEEE-CCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCCcEE-EEeCCeEEEEeCCC---CeE
Q 016552          239 GR----FSREAIDAVGW-KGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRGPVA-AMDEEVLYGIDENS---CTL  308 (387)
Q Consensus       239 ~~----~~~~~~~~~~~-~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~~~~-~~~~~~ly~~~~~~---~~l  308 (387)
                      ..    +.......+.. ++++++....+ ..++.+|..++..+.+...  .+ ....+ ...++.+++.....   ..+
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--~~-~~~~~~s~~~~~~~~~~~~~~~~~~i  362 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGP--WT-EWAATLTVSGTRAVGVAASPRTAYEV  362 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSS--CC-EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCC--CC-eEEEEEecCCCEEEEEEcCCCCCCEE
Confidence            21    11101122332 67777665433 4566779888877766532  11 11223 45566666665322   368


Q ss_pred             EEEeCCCCceeEcc
Q 016552          309 SRYDEVMDDWKEVV  322 (387)
Q Consensus       309 ~~yd~~~~~W~~v~  322 (387)
                      +.+|.++++.+.+.
T Consensus       363 ~~~d~~~g~~~~l~  376 (662)
T 3azo_A          363 VELDTVTGRARTIG  376 (662)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEECCCCceEEee
Confidence            99999888877764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=93.51  E-value=4.2  Score=36.77  Aligned_cols=129  Identities=13%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD  294 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~  294 (387)
                      .+.+||..+++    -...-..+..      ..++..+....++.. +..+.+||..+.. +.+.. ...  .....++.
T Consensus        82 ~v~iWd~~~~~----~~~~~~~~~~------v~~v~~~~~~~~~~~-~~~i~i~d~~~~~-~~~~~-~~~--~~~~~~~s  146 (355)
T 3vu4_A           82 VVHIWDDVKKQ----DVSRIKVDAP------VKDLFLSREFIVVSY-GDVISVFKFGNPW-KRITD-DIR--FGGVCEFS  146 (355)
T ss_dssp             EEEEEETTTTE----EEEEEECSSC------EEEEEECSSEEEEEE-TTEEEEEESSTTC-CBSSC-CEE--EEEEEEEE
T ss_pred             EEEEEECCCCc----EEEEEECCCc------eEEEEEcCCEEEEEE-cCEEEEEECCCCc-eeeEE-ecc--CCceEEEE
Confidence            88999998887    3322212211      223334433333322 3578999988761 11111 110  11122333


Q ss_pred             CCeEEEE-eCCCCeEEEEeCCCCc-eeE-------------ccccccccCceEEE--EeCCeEEEEecCCCe-EEEEecc
Q 016552          295 EEVLYGI-DENSCTLSRYDEVMDD-WKE-------------VVKSDLLKGARHAA--AGGGRVCAVCENGGG-IVVVDVK  356 (387)
Q Consensus       295 ~~~ly~~-~~~~~~l~~yd~~~~~-W~~-------------v~~~~~~~~~~~~~--~~~g~i~v~gg~~~~-i~~~d~~  356 (387)
                      .+.+.+. +..+|.+..||..+.. +..             +..+.........+  ..+|++++.|+.... +.+||+.
T Consensus       147 ~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          147 NGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             TTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred             ccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            3444444 5567899999998753 111             11122222333333  346788888777776 9999998


Q ss_pred             CC
Q 016552          357 AA  358 (387)
Q Consensus       357 ~~  358 (387)
                      +.
T Consensus       227 ~~  228 (355)
T 3vu4_A          227 DG  228 (355)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=93.42  E-value=0.019  Score=53.32  Aligned_cols=147  Identities=10%  Similarity=-0.005  Sum_probs=63.9

Q ss_pred             EEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEEC
Q 016552          191 AGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV  270 (387)
Q Consensus       191 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~  270 (387)
                      .++.++.||+.+. +        ..+.++|..+++..  |+.-.   .+..    ...+..+|++|+.+..+..+.++|.
T Consensus         5 P~v~~~~v~~gs~-d--------g~v~a~d~~tG~~~--W~~~~---~~~~----s~p~~~~g~~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            5 VTLPETLLFVSTL-D--------GSLHAVSKRTGSIK--WTLKE---DPVL----QVPTHVEEPAFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             ---CTTEEEEEET-T--------SEEEEEETTTCCEE--EEEEC---CCSC----CCC-----CCEEECTTTCCEEEC--
T ss_pred             CeeeCCEEEEEcC-C--------CEEEEEECCCCCEE--EEecC---CCce----ecceEcCCCEEEEeCCCCEEEEEEC
Confidence            3455677777542 1        26889999988865  87544   1111    2234457778887655568999998


Q ss_pred             CCC--ceeecccccccC-CCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEccccccccCceEEEEeCCeEEEEec
Q 016552          271 VAN--TWDDMREGMVRG-WRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSDLLKGARHAAAGGGRVCAVCE  345 (387)
Q Consensus       271 ~~~--~W~~~~~~~~~~-~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~~~~~~~~~~~~~g~i~v~gg  345 (387)
                      +++  .|+.-.. .+.. ...+.. ..++.||+ +..++.+++||.+++  .|+.-....     ..... .+..++++.
T Consensus        67 ~tG~~~w~~~~~-~~~~~~~sp~~-~~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p-~~~~v~~~~  137 (369)
T 2hz6_A           67 KNNEGLTKLPFT-IPELVQASPCR-SSDGILYM-GKKQDIWYVIDLLTGEKQQTLSSAFA-----DSLSP-STSLLYLGR  137 (369)
T ss_dssp             ---CCSEECSCC-HHHHHTTCSCC------CCC-CEEEEEEEEECCC----------------------------EEEEE
T ss_pred             CCCceeeeeecc-CccccccCceE-ecCCEEEE-EeCCCEEEEEECCCCcEEEEecCCCc-----ccccc-cCCEEEEEe
Confidence            765  4653221 1110 111111 14555554 333567999998865  364322110     01111 344444555


Q ss_pred             CCCeEEEEeccCCCCCCceEE
Q 016552          346 NGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       346 ~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      .+..+..+|..++  ...|..
T Consensus       138 ~dg~v~a~d~~tG--~~~W~~  156 (369)
T 2hz6_A          138 TEYTITMYDTKTR--ELRWNA  156 (369)
T ss_dssp             EEEEEECCCSSSS--SCCCEE
T ss_pred             cCCEEEEEECCCC--CEEEeE
Confidence            5667888898754  135874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.33  E-value=4.3  Score=36.41  Aligned_cols=184  Identities=10%  Similarity=0.027  Sum_probs=88.1

Q ss_pred             cCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC-CCCCccccceEEE
Q 016552          172 ICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL-KDGRFSREAIDAV  249 (387)
Q Consensus       172 ~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~-p~~~~~~~~~~~~  249 (387)
                      .-.+|+.+. .+......+.... ++.+|++|.. .        .+...+-.-.+    |+.+... +.+..  ......
T Consensus        23 ~g~~W~~~~-~~~~~~~~~v~~~~~~~~~~~G~~-g--------~i~~s~DgG~t----W~~~~~~~~~~~~--~~~~i~   86 (327)
T 2xbg_A           23 DYNPWEAIQ-LPTTATILDMSFIDRHHGWLVGVN-A--------TLMETRDGGQT----WEPRTLVLDHSDY--RFNSVS   86 (327)
T ss_dssp             SSCCEEEEE-CSCSSCEEEEEESSSSCEEEEETT-T--------EEEEESSTTSS----CEECCCCCSCCCC--EEEEEE
T ss_pred             CCCCceEee-cCCCCcEEEEEECCCCcEEEEcCC-C--------eEEEeCCCCCC----CeECCCCCCCCCc--cEEEEE
Confidence            346788765 2332223333333 4577886531 1        22222112235    9988632 11111  112233


Q ss_pred             EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEcccccccc
Q 016552          250 GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK  328 (387)
Q Consensus       250 ~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~  328 (387)
                      ..++.+|+++..+ .++.-+=.-.+|+.+.......-....++ ..++.+|+.+. .+.++.-+-...+|+.+...... 
T Consensus        87 ~~~~~~~~~g~~g-~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~-  163 (327)
T 2xbg_A           87 FQGNEGWIVGEPP-IMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQALVQEAIG-  163 (327)
T ss_dssp             EETTEEEEEEETT-EEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEEEECSCCC-
T ss_pred             ecCCeEEEEECCC-eEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEEeecCCCc-
Confidence            4467888875433 34433223468998864211111112233 35678888764 55677666667899998653221 


Q ss_pred             CceEEEE-eCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCCCCceeEEEE
Q 016552          329 GARHAAA-GGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTPLGFEALSVH  378 (387)
Q Consensus       329 ~~~~~~~-~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p~~~~~~~~~  378 (387)
                      ..+.+.. -++.+++++.. ..++.-+-.   .+..|+. ..+.......+.
T Consensus       164 ~~~~~~~~~~~~~~~~g~~-G~~~~S~d~---gG~tW~~~~~~~~~~~~~~~  211 (327)
T 2xbg_A          164 VMRNLNRSPSGEYVAVSSR-GSFYSTWEP---GQTAWEPHNRTTSRRLHNMG  211 (327)
T ss_dssp             CEEEEEECTTSCEEEEETT-SSEEEEECT---TCSSCEEEECCSSSCEEEEE
T ss_pred             ceEEEEEcCCCcEEEEECC-CcEEEEeCC---CCCceeECCCCCCCccceeE
Confidence            1222222 35667766543 344444322   1236874 333333333333

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=92.95  E-value=11  Score=39.84  Aligned_cols=133  Identities=11%  Similarity=-0.037  Sum_probs=70.5

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEE-EEECCCCceeecccccccCCCCcEEEE
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGA-VYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~-~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      .+.++|..+..    -..+...+.....   ..... +|+..+.......++ +||..+++-..+.. .  ......++.
T Consensus       318 ~i~~~~~~~~~----~~~~~~~~~~~~~---~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~-~--~~~~~~~~~  386 (1045)
T 1k32_A          318 QAFIQDVSGTY----VLKVPEPLRIRYV---RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEE-N--LGNVFAMGV  386 (1045)
T ss_dssp             EEEEECTTSSB----EEECSCCSCEEEE---EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCC-C--CCSEEEEEE
T ss_pred             EEEEEcCCCCc----eEEccCCCcceEE---eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecC-C--ccceeeeEE
Confidence            56777777766    5554322210110   11122 555333333345678 89998876555431 1  111122333


Q ss_pred             -eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecC-C---------CeEEEEeccCC
Q 016552          294 -DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCEN-G---------GGIVVVDVKAA  358 (387)
Q Consensus       294 -~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~-~---------~~i~~~d~~~~  358 (387)
                       -+|+.++++...+.+++||.++++-..+..............-+|+.+++++. +         ..++++|+.+.
T Consensus       387 SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          387 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence             25555555556678999999988766554221111122234456775555432 1         47899998864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.87  E-value=2  Score=42.34  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc-cc--cceEEEEECCEEEEEeeeCCeEE
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF-SR--EAIDAVGWKGKLCLVNVKGAEGA  266 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~-~~--~~~~~~~~~g~lyv~gg~~~~i~  266 (387)
                      ..++.+++||+....         ..+.++|..+++..  |+.-...+.... ..  .....++.+++||+... +..+.
T Consensus        63 ~P~v~~g~vyv~~~~---------~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-dg~l~  130 (582)
T 1flg_A           63 QAIVSDGVIYVTASY---------SRLFALDAKTGKRL--WTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVV  130 (582)
T ss_dssp             CCEEETTEEEEEETT---------TEEEEEESSSCCEE--EEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEE
T ss_pred             ccEEECCEEEEEcCC---------CCEEEEECCCCcEE--EEEcCCCCcccccccccCCCccEEECCEEEEEeC-CCEEE
Confidence            446789999997542         13788999988866  887554332110 00  00123467899987643 34899


Q ss_pred             EEECCCC--ceeecccccccCCC-CcEEEEeCC------eEEEEeC-----CCCeEEEEeCCCC--ceeE
Q 016552          267 VYDVVAN--TWDDMREGMVRGWR-GPVAAMDEE------VLYGIDE-----NSCTLSRYDEVMD--DWKE  320 (387)
Q Consensus       267 ~yD~~~~--~W~~~~~~~~~~~~-~~~~~~~~~------~ly~~~~-----~~~~l~~yd~~~~--~W~~  320 (387)
                      ++|.+++  .|+.-......... ..+.++.++      .||+-..     ..+.|++||.+++  .|+.
T Consensus       131 AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             EEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence            9999888  48754321111111 112233344      5655321     2568999999876  4864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=92.78  E-value=6.6  Score=38.10  Aligned_cols=107  Identities=13%  Similarity=0.092  Sum_probs=59.9

Q ss_pred             EEEECC-EEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCC---CCeEEEEeCCCCceeEccc
Q 016552          248 AVGWKG-KLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDEN---SCTLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       248 ~~~~~g-~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~---~~~l~~yd~~~~~W~~v~~  323 (387)
                      +...+| .++++.+....+.+||+++++-..+... +.  ......-.|..|+.....   ...|+.+|.++++++.+..
T Consensus       116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~  192 (582)
T 3o4h_A          116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  192 (582)
T ss_dssp             EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC
T ss_pred             eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec
Confidence            455566 3555555444566899988876655431 11  122222334444433221   1569999999998877643


Q ss_pred             cccccCceEEEEeCCeEEEEecCCC--eEEEEeccCC
Q 016552          324 SDLLKGARHAAAGGGRVCAVCENGG--GIVVVDVKAA  358 (387)
Q Consensus       324 ~~~~~~~~~~~~~~g~i~v~gg~~~--~i~~~d~~~~  358 (387)
                      .+... ......-+|+.++.+....  .|+++|..++
T Consensus       193 ~~~~~-~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          193 GEGSF-SSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             SSCEE-EEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             CCCcc-ccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            32211 2223345677655544444  7889998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=92.66  E-value=8.8  Score=38.16  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=69.7

Q ss_pred             cceEEEEECCCCccccCeEEcCCCCCCCccccceEEE--EECCE-EEEEeeeC----CeEEEEECCCC-ceeeccccccc
Q 016552          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV--GWKGK-LCLVNVKG----AEGAVYDVVAN-TWDDMREGMVR  284 (387)
Q Consensus       213 ~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~--~~~g~-lyv~gg~~----~~i~~yD~~~~-~W~~~~~~~~~  284 (387)
                      ...+.++|..+++    -..+.......   .....+  .-||+ |++.....    ..+..+|+.++ ....+......
T Consensus       234 ~~~l~~~d~~~~~----~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          234 HVTVGIYHLATGK----TVYLQTGEPKE---KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EEEEEEEETTTTE----EEECCCCSCTT---CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             eeEEEEEECCCCc----eEeeccCCCCc---eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence            3578899998887    55544211110   011122  23666 54433221    37889999988 66655421111


Q ss_pred             CCC--CcEEEE-e--CCeEEEEeCCCC--eEEEEeCCCCceeEccccccccCceEEEEeCC-eEEEEecCC----CeEEE
Q 016552          285 GWR--GPVAAM-D--EEVLYGIDENSC--TLSRYDEVMDDWKEVVKSDLLKGARHAAAGGG-RVCAVCENG----GGIVV  352 (387)
Q Consensus       285 ~~~--~~~~~~-~--~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g-~i~v~gg~~----~~i~~  352 (387)
                      .+.  ...++. .  +|++++.+..++  .|+.+|.++.....+..............-+| .|++.+..+    ..++.
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            111  112232 3  667665554444  57777876666665543211111111223344 466655443    36788


Q ss_pred             EeccCC
Q 016552          353 VDVKAA  358 (387)
Q Consensus       353 ~d~~~~  358 (387)
                      +|..+.
T Consensus       387 ~d~~~~  392 (706)
T 2z3z_A          387 IDIKGG  392 (706)
T ss_dssp             EETTCC
T ss_pred             EEcCCC
Confidence            887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=92.48  E-value=4.5  Score=37.37  Aligned_cols=111  Identities=11%  Similarity=0.027  Sum_probs=58.8

Q ss_pred             EEEEEecCCCCCCCCCcceEEEEECCCCccccCe-----EEcCCCCCCCcc------ccceEEEE--ECCEEEEEeeeCC
Q 016552          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRW-----EKTGELKDGRFS------REAIDAVG--WKGKLCLVNVKGA  263 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W-----~~~~~~p~~~~~------~~~~~~~~--~~g~lyv~gg~~~  263 (387)
                      ++++.|+.+.        .+.+||..+..    -     ..+.....+...      .....++.  -+|++.+.++. .
T Consensus       240 ~~l~s~~~dg--------~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          240 NTFVYSSSKG--------TIRLCDMRASA----LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             TEEEEEETTS--------CEEEEETTTCS----SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             cEEEEEeCCC--------eEEEEECcCCc----cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            6777777644        78899988876    3     111111000000      00122222  25676666666 7


Q ss_pred             eEEEEECCC-Cce-eecccccccCCC-------------CcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEc
Q 016552          264 EGAVYDVVA-NTW-DDMREGMVRGWR-------------GPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEV  321 (387)
Q Consensus       264 ~i~~yD~~~-~~W-~~~~~~~~~~~~-------------~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v  321 (387)
                      .+.+||..+ ++- ..+.. ......             ...++. .++..++.++.++.|.+||.++..-..+
T Consensus       307 ~v~iwd~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQV-HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL  379 (447)
T ss_dssp             EEEEEETTCCSSCSCCEES-CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred             eEEEEeCCCCccccceeec-cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence            999999976 331 11111 000000             001333 3556667777789999999988765543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=91.83  E-value=7.3  Score=35.38  Aligned_cols=106  Identities=14%  Similarity=0.119  Sum_probs=52.4

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEe-CCEEEEEecCCCC-CCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCS-RGAVYVASGIGSQ-FSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+++||+.+++-..  .++.....+.+..- +..+|+..-.... ..+...+.+.+||..+.+.   -..++ ++..++
T Consensus        31 ~~v~v~D~~t~~~~~--~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---~~~i~-~~~~~~  104 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLG--MVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---EKEIS-LPPKRV  104 (361)
T ss_dssp             CEEEEEETTTCCEEE--EEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---EEEEE-ECTTBC
T ss_pred             CeEEEEECCCCeEEE--EecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---EEEEE-cCcccc
Confidence            468899988876543  22222211112222 3478987532110 0011234789999987651   22332 111111


Q ss_pred             ---cccceEEEEECC-EEEEEeee-CCeEEEEECCCCce
Q 016552          242 ---SREAIDAVGWKG-KLCLVNVK-GAEGAVYDVVANTW  275 (387)
Q Consensus       242 ---~~~~~~~~~~~g-~lyv~gg~-~~~i~~yD~~~~~W  275 (387)
                         ......++.-+| .+|+.+.. .+.+.+||..+++=
T Consensus       105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A          105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY  143 (361)
T ss_dssp             CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred             ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence               000122223355 57776654 46899999988743

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=91.82  E-value=2.6  Score=40.56  Aligned_cols=149  Identities=15%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE---------CCE-EEEEeeeC--
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---------KGK-LCLVNVKG--  262 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---------~g~-lyv~gg~~--  262 (387)
                      +++|||+-..        ...+.+.|+.++.    -..+.......+.+  .....+         +|. ||+.....  
T Consensus       151 ~~~Lyv~~~~--------~~~i~~ID~~~~~----v~~l~~~~~~~~~~--p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          151 KDHLYICYDG--------HKAIQLIDLKNRM----LSSPLNINTIPTNR--IRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEEEEET--------EEEEEEEETTTTE----EEEEECCTTSSCSB--EEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCEEEEEECC--------CCeEEEEECCCCE----EEEEEccCccccCC--CcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            4679998542        1368889999998    77766543322221  223333         554 88886543  


Q ss_pred             ----CeEEEEECCC-Cceeecc--cccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCC-------CC-ceeEcc---
Q 016552          263 ----AEGAVYDVVA-NTWDDMR--EGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEV-------MD-DWKEVV---  322 (387)
Q Consensus       263 ----~~i~~yD~~~-~~W~~~~--~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~-------~~-~W~~v~---  322 (387)
                          ..+..++... +.|....  ...........+++.  ++.||+.....+.|++||++       +. .|....   
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                2477887655 4664200  001111112344443  57899998888899999997       44 353321   


Q ss_pred             --------ccccccCceEEE-EeCCe-EEEEecCCCeEEEEeccC
Q 016552          323 --------KSDLLKGARHAA-AGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       323 --------~~~~~~~~~~~~-~~~g~-i~v~gg~~~~i~~~d~~~  357 (387)
                              ..+.....+.++ .-+|. |||.=..+..|..+|.+.
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                    112112223333 34555 788766778898877653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=91.82  E-value=11  Score=37.53  Aligned_cols=144  Identities=8%  Similarity=-0.068  Sum_probs=74.3

Q ss_pred             CccEEEeccCCcee--eCCCCCCC-CcceeE-EEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCC
Q 016552          164 TRPLIFDPICRTWT--FGPELVTP-RRWCAA-GCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDG  239 (387)
Q Consensus       164 ~~~~vyd~~t~~W~--~l~~~p~~-r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~  239 (387)
                      ..+++++..|..-.  .+...+.. ...... ..-+|+..++.....    .....++++|..+..    |..+..-...
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~----~~~~~l~~~~~~~~~----~~~l~~~~~~  273 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG----WSENDVYWKRPGEKD----FRLLVKGVGA  273 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET----TTEEEEEEECTTCSS----CEEEEECSSC
T ss_pred             CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC----CCceEEEEEcCCCCc----eEEeecCCCc
Confidence            45888888877532  22222211 112222 223454433332211    022366777776667    8877632221


Q ss_pred             CccccceEEEEECCEEEEEeeeC---CeEEEEECCCCc---eeecccccccCCCCcEEEEeCCeEEEEeCCCC--eEEEE
Q 016552          240 RFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVANT---WDDMREGMVRGWRGPVAAMDEEVLYGIDENSC--TLSRY  311 (387)
Q Consensus       240 ~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~~---W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~--~l~~y  311 (387)
                      .     ...+..+|.+|+....+   ..+..+|+.+..   |+.+-...+ ......++..+++|++....++  .|+.+
T Consensus       274 ~-----~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          274 K-----YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS-SASLLSVSIVGGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             C-----EEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-SCEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             e-----EEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC-CCeEEEEEEECCEEEEEEEECCEEEEEEE
Confidence            1     22333577766665422   679999987764   877643211 1112234455888887765444  57788


Q ss_pred             eCCCCceeEc
Q 016552          312 DEVMDDWKEV  321 (387)
Q Consensus       312 d~~~~~W~~v  321 (387)
                      |.++..-..+
T Consensus       348 ~~~g~~~~~l  357 (695)
T 2bkl_A          348 TLKGKPVRTV  357 (695)
T ss_dssp             ETTCCEEEEC
T ss_pred             eCCCCeeEEe
Confidence            8765533333

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=91.80  E-value=11  Score=37.54  Aligned_cols=92  Identities=10%  Similarity=-0.057  Sum_probs=47.7

Q ss_pred             eEEEEECCC-CceeecccccccCC--CCcEEEEeCCeEEEEeC----CCCeEEEEeCCCCceeEccccccc----cCceE
Q 016552          264 EGAVYDVVA-NTWDDMREGMVRGW--RGPVAAMDEEVLYGIDE----NSCTLSRYDEVMDDWKEVVKSDLL----KGARH  332 (387)
Q Consensus       264 ~i~~yD~~~-~~W~~~~~~~~~~~--~~~~~~~~~~~ly~~~~----~~~~l~~yd~~~~~W~~v~~~~~~----~~~~~  332 (387)
                      .+.++|+.+ ++-..+........  ...+- -.+..|++...    ....|+.||.++.+...+......    .....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence            678888887 66444332100110  11222 33445555432    134699999999877665432211    11222


Q ss_pred             EEEeCCeEEEEecCC--CeEEEEecc
Q 016552          333 AAAGGGRVCAVCENG--GGIVVVDVK  356 (387)
Q Consensus       333 ~~~~~g~i~v~gg~~--~~i~~~d~~  356 (387)
                      ...-+|++++.+...  ..++.+|..
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~  368 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSK  368 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSS
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCC
Confidence            345577766665543  366777754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=91.40  E-value=7.7  Score=34.81  Aligned_cols=204  Identities=12%  Similarity=0.027  Sum_probs=99.3

Q ss_pred             EEEEE-CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCC-CC---Ccce-eEEEe-CCEEEEEecCCCCCCCCCc
Q 016552          141 QLVSL-SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELV-TP---RRWC-AAGCS-RGAVYVASGIGSQFSSDVA  213 (387)
Q Consensus       141 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p-~~---r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~  213 (387)
                      .++.. +|++|+.......  .. ..++.++  +.+-...|... ..   .... ..+.. +++|||+.-...   ....
T Consensus        21 ~va~~~~g~~~v~~~~~~~--~~-~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~---~~~~   92 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQ--PE-MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ---SKSV   92 (343)
T ss_dssp             EEEECTTSCEEEEECGGGC--CS-CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH---HTSC
T ss_pred             eEEECCCCCEEEEeCCCCC--Cc-eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC---cCCC
Confidence            34443 6788887432111  11 4677777  55444333211 11   1122 22222 479999852110   0012


Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCcc--ccceEEEEE--CCEEEEEee---eCCeEEEEECCCC-ceeeccc--cc-
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFS--REAIDAVGW--KGKLCLVNV---KGAEGAVYDVVAN-TWDDMRE--GM-  282 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~--~~~~~~~~~--~g~lyv~gg---~~~~i~~yD~~~~-~W~~~~~--~~-  282 (387)
                      ..+.+||+.+++    -...-.++.....  ......++-  ++.+|+...   ....+.+||+.++ .|+.+..  .+ 
T Consensus        93 ~~i~~~d~~tg~----~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A           93 PKLVAWDTLNNQ----LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             CEEEEEETTTTE----EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             CeEEEEECCCCe----EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence            478999999887    4432223211000  000223332  478998865   4468999999866 4665532  00 


Q ss_pred             c-------cC--------------CC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCC--C-------ceeEcccccccc
Q 016552          283 V-------RG--------------WR--GPVAAMD--EEVLYGIDENSCTLSRYDEVM--D-------DWKEVVKSDLLK  328 (387)
Q Consensus       283 ~-------~~--------------~~--~~~~~~~--~~~ly~~~~~~~~l~~yd~~~--~-------~W~~v~~~~~~~  328 (387)
                      +       .+              +.  ...+++.  ++.||+.......++.+|...  +       .+..+.......
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  248 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP  248 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence            0       00              10  1123332  336887766556788887531  0       011111000000


Q ss_pred             Cc-eEEEEeCCeEEEEecCCCeEEEEecc
Q 016552          329 GA-RHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       329 ~~-~~~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      .+ ..++--+|.||+....++.|.+||+.
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEECC
Confidence            11 22233468888887777888999883

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.35  E-value=3.8  Score=38.60  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=78.9

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC----CeEEEEECC
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG----AEGAVYDVV  271 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~  271 (387)
                      +.||+.-.       .  ..+.++|+.+++    ...+...    .......++--+|.||+.....    ..+..++..
T Consensus       153 g~Lyv~D~-------~--~~I~~id~~~g~----v~~~~~~----~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          153 DDLYWVGQ-------R--DAFRHVDFVNQY----VDIKTTN----IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CEEEEECB-------T--SCEEEEETTTTE----EEEECCC----CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CEEEEEeC-------C--CCEEEEECCCCE----EEEeecC----CCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            78999721       1  578999998888    7666531    1111122333467799886422    235556543


Q ss_pred             CCceeecccccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCce-eEccccccccCceEEE-EeCC-eEEEEecC
Q 016552          272 ANTWDDMREGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDW-KEVVKSDLLKGARHAA-AGGG-RVCAVCEN  346 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W-~~v~~~~~~~~~~~~~-~~~g-~i~v~gg~  346 (387)
                       ..+..... .........+++.  ++.||+.+...+.|++||+++..- ..+...........++ .-+| .||+.-..
T Consensus       216 -~~~~~~~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          216 -SGFTERLS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             -GTTCCEEE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             -CCeecccc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence             22321010 1111111223333  688999887778999999986654 2332221111122233 3345 49998777


Q ss_pred             CCeEEEEecc
Q 016552          347 GGGIVVVDVK  356 (387)
Q Consensus       347 ~~~i~~~d~~  356 (387)
                      +..|..+|.+
T Consensus       294 ~~~I~~~~~d  303 (433)
T 4hw6_A          294 KHCIYRVDYN  303 (433)
T ss_dssp             TTEEEEEEBC
T ss_pred             CCEEEEEeCC
Confidence            8899998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=91.07  E-value=9.1  Score=35.06  Aligned_cols=63  Identities=10%  Similarity=0.072  Sum_probs=38.2

Q ss_pred             eCCeEEEEeCC---------CCeEEEEeCCCCceeEccccccccCceE-EEEeCCe-EEEEec-CCCeEEEEeccCC
Q 016552          294 DEEVLYGIDEN---------SCTLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGR-VCAVCE-NGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~~~---------~~~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~-i~v~gg-~~~~i~~~d~~~~  358 (387)
                      .+++||+....         ++.|+++|.++.+=  +...+....... .+.-+|+ +++++. +.+.+.++|..+.
T Consensus       277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            35789997531         35799999987643  333322222332 3344566 455544 5789999999854

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=90.80  E-value=14  Score=36.81  Aligned_cols=100  Identities=9%  Similarity=0.008  Sum_probs=51.8

Q ss_pred             eEEEEECCC-CccccCeEEcCCC-CCCCccccceEEEEECCE-EEEEeee----CCeEEEEECCCCceeecccccccCCC
Q 016552          215 SVEKWDLMN-GEKNSRWEKTGEL-KDGRFSREAIDAVGWKGK-LCLVNVK----GAEGAVYDVVANTWDDMREGMVRGWR  287 (387)
Q Consensus       215 ~v~~yd~~~-~~~~~~W~~~~~~-p~~~~~~~~~~~~~~~g~-lyv~gg~----~~~i~~yD~~~~~W~~~~~~~~~~~~  287 (387)
                      .+.++|..+ .+    -..+... ......  ...+. -||+ |++....    ...+..+|+.+++...+-......+.
T Consensus       264 ~l~~~d~~~~~~----~~~~~~~~~~~~~~--~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          264 KLGVISPAEQAQ----TQWIDLGKEQDIYL--ARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEEEECSSTTCC----CEEECCCSCSSEEE--EEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             EEEEEECCCCCc----eEEecCCCCcceEE--EEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            678889888 76    4444321 111110  12233 5555 4443321    15788999998877655332222211


Q ss_pred             ---CcEEEEeCCeEEEEeCCCC--eEEEEeCCCCceeEcc
Q 016552          288 ---GPVAAMDEEVLYGIDENSC--TLSRYDEVMDDWKEVV  322 (387)
Q Consensus       288 ---~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~  322 (387)
                         .......+|++++.+..++  .|+.+|.++. ...+.
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence               1112233666666665554  5888887666 55443

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=90.79  E-value=2.7  Score=35.81  Aligned_cols=146  Identities=13%  Similarity=0.026  Sum_probs=76.2

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEe---------------ccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFD---------------PICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQ  207 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd---------------~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  207 (387)
                      ..|.+|++-|.         .+|+++               +.+..|..||+.+-.....-++.  .++++|++-|.   
T Consensus        12 ~~ge~~fFk~~---------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg~---   79 (225)
T 3oyo_A           12 SEYEVYFFAKN---------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSGN---   79 (225)
T ss_dssp             STTEEEEEETT---------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEETT---
T ss_pred             CCCEEEEEECC---------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcCC---
Confidence            36788888762         345555               23455666654332222222332  57899999763   


Q ss_pred             CCCCCcceEEEEECCCCccccCeEEc--------CCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCcee
Q 016552          208 FSSDVAKSVEKWDLMNGEKNSRWEKT--------GELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWD  276 (387)
Q Consensus       208 ~~~~~~~~v~~yd~~~~~~~~~W~~~--------~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~  276 (387)
                             ..++||..+++...+-..-        +.+|...+. ....+|..   ++++|++.|  +..+.||..+++..
T Consensus        80 -------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~-~~IDAA~~~~~~gk~yfFkG--~~yw~~d~~~~~~~  149 (225)
T 3oyo_A           80 -------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFE-DSIDSAFRSTKGKEVYLFKG--NKYVRIAYDSKQLV  149 (225)
T ss_dssp             -------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTT-SCCCEEEECSSTTEEEEEET--TEEEEEETTTTEEE
T ss_pred             -------EEEEEecccccCCCceecCchhhhhcCCCCCCcccc-cccceEEEECCCCcEEEEeC--CeEEEEECCCCeec
Confidence                   5577766432110001110        122221000 01334443   689999977  46899997766544


Q ss_pred             ecc----ccccc------CCCCcEEEE--eCCeEEEEeCCCCeEEEEeCC
Q 016552          277 DMR----EGMVR------GWRGPVAAM--DEEVLYGIDENSCTLSRYDEV  314 (387)
Q Consensus       277 ~~~----~~~~~------~~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~  314 (387)
                      .-+    ...+.      .....++..  .++++|++-+  ...+.||..
T Consensus       150 ~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG--~~ywr~d~~  197 (225)
T 3oyo_A          150 GNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG--QNYVRIDFT  197 (225)
T ss_dssp             EEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET--TEEEEEECC
T ss_pred             CCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC--CEEEEEeCC
Confidence            311    11111      111234444  3789999964  478999998

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=90.69  E-value=15  Score=36.77  Aligned_cols=132  Identities=13%  Similarity=0.025  Sum_probs=73.4

Q ss_pred             ceEEEEECCCC--ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCCC---ceeecccccccC
Q 016552          214 KSVEKWDLMNG--EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVAN---TWDDMREGMVRG  285 (387)
Q Consensus       214 ~~v~~yd~~~~--~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~---~W~~~~~~~~~~  285 (387)
                      +.++++|..+.  +    |..+..-.....    ......++++|+....+   ..+..+|+.+.   .|+.+-+.....
T Consensus       259 ~~i~~~d~~~~~~~----~~~l~~~~~~~~----~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  330 (693)
T 3iuj_A          259 NRLYVKDLSQENAP----LLTVQGDLDADV----SLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV  330 (693)
T ss_dssp             CEEEEEETTSTTCC----CEEEECSSSSCE----EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             cEEEEEECCCCCCc----eEEEeCCCCceE----EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE
Confidence            47888898766  5    777653221111    12234578898886543   67899998764   487654322221


Q ss_pred             CCCcEEEEeCCeEEEEeCCCC--eEEEEeCCCCceeEccccccccCceEEEE--eC-CeEEEEecC---CCeEEEEeccC
Q 016552          286 WRGPVAAMDEEVLYGIDENSC--TLSRYDEVMDDWKEVVKSDLLKGARHAAA--GG-GRVCAVCEN---GGGIVVVDVKA  357 (387)
Q Consensus       286 ~~~~~~~~~~~~ly~~~~~~~--~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~-g~i~v~gg~---~~~i~~~d~~~  357 (387)
                        . .....++.|++.....+  .|+.+|.+++....+.. +.. +....+.  .+ +.+++....   -..++.+|+.+
T Consensus       331 --~-~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~-p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          331 --L-TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVAL-PGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             --E-EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECC-SSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             --E-EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeec-CCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence              1 45556777766554343  68999998765555432 211 1111111  13 334444222   26788888875


Q ss_pred             C
Q 016552          358 A  358 (387)
Q Consensus       358 ~  358 (387)
                      +
T Consensus       406 g  406 (693)
T 3iuj_A          406 G  406 (693)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=90.13  E-value=10  Score=34.19  Aligned_cols=146  Identities=7%  Similarity=-0.021  Sum_probs=79.0

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCC---ccccceEEEEE-----CCEEEEEeee-------------CCeEEEEECC-
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGR---FSREAIDAVGW-----KGKLCLVNVK-------------GAEGAVYDVV-  271 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~---~~~~~~~~~~~-----~g~lyv~gg~-------------~~~i~~yD~~-  271 (387)
                      ..|.++|+..+.    =.++ ..+...   .......++.+     +|+|+++...             ...+.+||+. 
T Consensus        35 g~V~~~~~~~~~----~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~  109 (334)
T 2p9w_A           35 GRIEVYNPKTQS----HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL  109 (334)
T ss_dssp             TEEEEECTTTCC----EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC
T ss_pred             CEEEEEcCCCCe----EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc
Confidence            478888888665    4444 233210   00011234444     5788885331             1568999988 


Q ss_pred             --CC--ceeec-cccccc-------CC--CCcEEEEeCCeEEEEeCCC-CeEEEEeCCCCc---eeEcccc-ccccCceE
Q 016552          272 --AN--TWDDM-REGMVR-------GW--RGPVAAMDEEVLYGIDENS-CTLSRYDEVMDD---WKEVVKS-DLLKGARH  332 (387)
Q Consensus       272 --~~--~W~~~-~~~~~~-------~~--~~~~~~~~~~~ly~~~~~~-~~l~~yd~~~~~---W~~v~~~-~~~~~~~~  332 (387)
                        ++  .|..- ......       ..  ....++-.+|..|+.+... +.|+.+|++...   |..-.+. ....+..+
T Consensus       110 ~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nG  189 (334)
T 2p9w_A          110 SENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSG  189 (334)
T ss_dssp             CTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSE
T ss_pred             CCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcce
Confidence              44  45422 110100       11  1122222367899987666 889999998763   4321111 12334556


Q ss_pred             EEEe-CCeEEEEecCCCeEEEEeccCCCCCCceEEe
Q 016552          333 AAAG-GGRVCAVCENGGGIVVVDVKAAAAPTIFVVD  367 (387)
Q Consensus       333 ~~~~-~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~~  367 (387)
                      ++.. +|+++++...+..++.+|+.+.   -.|.+.
T Consensus       190 Iv~~pdg~~Liv~~~~g~L~~fD~~~p---v~~~v~  222 (334)
T 2p9w_A          190 ITFDPHSNKLIAFGGPRALTAFDVSKP---YAWPEP  222 (334)
T ss_dssp             EEEETTTTEEEEESSSSSEEEEECSSS---SCCCEE
T ss_pred             EEEeCCCCEEEEEcCCCeEEEEcCCCC---cceeec
Confidence            6766 5655555444888999998842   345553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=90.02  E-value=9.7  Score=33.67  Aligned_cols=167  Identities=11%  Similarity=-0.029  Sum_probs=80.2

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEE-eCC-EEEEEecCC-C-----------------CCCCCCcceEEEEECCC
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRG-AVYVASGIG-S-----------------QFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~-~-----------------~~~~~~~~~v~~yd~~~  223 (387)
                      ..++++|..+++.+.+...+.   ....+. -++ .|++..... .                 .+.......+.++|..+
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             ceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            358899998888777654432   111221 244 454443210 0                 00001134688899988


Q ss_pred             CccccCe-EEcCCCCCCCccccceEEEEECCEEEEEeee---------CCeEEEEECCCCceeecccccccCCCCcEEEE
Q 016552          224 GEKNSRW-EKTGELKDGRFSREAIDAVGWKGKLCLVNVK---------GAEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       224 ~~~~~~W-~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~---------~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      ++    . ..+.. + . ..   .....-+| +++.+..         ...++.+|  ++++..+...   . .......
T Consensus       162 ~~----~~~~l~~-~-~-~~---~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~-~~~~~sp  224 (347)
T 2gop_A          162 EE----VIEEFEK-P-R-FS---SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK---V-SFYAVDS  224 (347)
T ss_dssp             TE----EEEEEEE-E-T-TC---EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE---E-SEEEEEE
T ss_pred             Ce----EEeeecC-C-C-cc---cccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC---c-ceeeECC
Confidence            87    6 55543 2 1 11   22333356 5555432         12567777  6666665432   1 1112223


Q ss_pred             eCCeEEEEeCC-------CCeEEEEeCCCCceeEccccccc-cCceEEEEeCCeEEEEecCCCeEEE-Ee
Q 016552          294 DEEVLYGIDEN-------SCTLSRYDEVMDDWKEVVKSDLL-KGARHAAAGGGRVCAVCENGGGIVV-VD  354 (387)
Q Consensus       294 ~~~~ly~~~~~-------~~~l~~yd~~~~~W~~v~~~~~~-~~~~~~~~~~g~i~v~gg~~~~i~~-~d  354 (387)
                      .|..|++....       ...|+.+|  ++++..+...... ........ ++ +++.+..+..+.+ ++
T Consensus       225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~~~  290 (347)
T 2gop_A          225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLYIW  290 (347)
T ss_dssp             CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEEEc
Confidence            34456665532       24799999  5666655432111 11112223 55 7666554444444 44

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.90  E-value=0.74  Score=42.02  Aligned_cols=111  Identities=10%  Similarity=-0.000  Sum_probs=60.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCC--ceeecccc--cccCCCCcEEEEeCCeEEEEe-CCCCeEEEEeCCCCceeEcccccc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVAN--TWDDMREG--MVRGWRGPVAAMDEEVLYGID-ENSCTLSRYDEVMDDWKEVVKSDL  326 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~--~~~~~~~~~~~~~~~~ly~~~-~~~~~l~~yd~~~~~W~~v~~~~~  326 (387)
                      +|.+|+.... ..++++|.+++  .|+.-...  .+.....+.. ..++.+|++. ..+|.|+++|.+++.|+.-...+.
T Consensus        10 ~~~V~v~t~d-G~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~-~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVE-GGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR-LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETT-SCEEEEETTTTEEEEEECGGGSCCSEECCCSCT-TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEeCC-CeEEEEECCCCcEEEEecCCccCCcEEecCCcc-ccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            4555554443 37888888777  58754320  1111111111 1356788876 368999999998887664333332


Q ss_pred             ccC--ceE----EEE------eCCeEEEEecCCCeEEEEeccCCCCCCceEE
Q 016552          327 LKG--ARH----AAA------GGGRVCAVCENGGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       327 ~~~--~~~----~~~------~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~  366 (387)
                      ...  ++.    -+.      ..+..+++|..+..++.+|..++  ..+|+.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG--~~~W~~  137 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG--EIISAF  137 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC--CEEEEE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC--cEEEEE
Confidence            221  111    111      14555666677778888888754  245764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=88.90  E-value=20  Score=35.75  Aligned_cols=180  Identities=14%  Similarity=0.039  Sum_probs=91.3

Q ss_pred             CCccEEEeccCCcee--eCCCCC-CCCcceeE-EEeCCE-EEEEecCCCCCCCCCcceEEEEECCC------C--ccccC
Q 016552          163 LTRPLIFDPICRTWT--FGPELV-TPRRWCAA-GCSRGA-VYVASGIGSQFSSDVAKSVEKWDLMN------G--EKNSR  229 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~--~l~~~p-~~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~------~--~~~~~  229 (387)
                      ...+++++..|..-.  .+...+ .+...... ..-+++ |++......    .....++++|..+      .  .    
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----~~~~~l~~~d~~~~~~~~~~~~~----  278 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC----DPVNRLWYCDLQQESNGITGILK----  278 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS----SSCCEEEEEEGGGSSSSSCSSCC----
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC----CCccEEEEEECcccccccCCccc----
Confidence            345888898887643  111111 12211222 233454 444332211    1135788899876      4  4    


Q ss_pred             eEEcCCCCCCCccccceEEEEECCEEEEEeeeC---CeEEEEECCCC---ceeecccccccCCCCcEEEEe-CCeEEEEe
Q 016552          230 WEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG---AEGAVYDVVAN---TWDDMREGMVRGWRGPVAAMD-EEVLYGID  302 (387)
Q Consensus       230 W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~---~~i~~yD~~~~---~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~  302 (387)
                      +..+..-....    ......-++.||+.+..+   ..+..+|+.+.   .|+.+-..... .....++.. ++.|++..
T Consensus       279 ~~~l~~~~~~~----~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~lv~~~  353 (710)
T 2xdw_A          279 WVKLIDNFEGE----YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-DVLEWVACVRSNFLVLCY  353 (710)
T ss_dssp             CEEEECSSSSC----EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CEEEEEEEETTTEEEEEE
T ss_pred             eEEeeCCCCcE----EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC-CeEEEEEEEcCCEEEEEE
Confidence            77665322111    111223356788776543   57999999876   58776542211 111233444 77777766


Q ss_pred             CCCC--eEEEEeCCCCc-eeEccccccccCceEEEEe--CC-eEEEEecC---CCeEEEEeccCC
Q 016552          303 ENSC--TLSRYDEVMDD-WKEVVKSDLLKGARHAAAG--GG-RVCAVCEN---GGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~--~l~~yd~~~~~-W~~v~~~~~~~~~~~~~~~--~g-~i~v~gg~---~~~i~~~d~~~~  358 (387)
                      ...+  .|+.+|+++++ ...+.. +  .+....+..  ++ .+++....   -..++.+|+.++
T Consensus       354 ~~~g~~~l~~~~~~~g~~~~~l~~-~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGALLKIFPL-E--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECC-C--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EECCEEEEEEEECCCCCEEEecCC-C--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            5444  58889985553 344332 1  222222222  34 44444322   257889998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=88.86  E-value=6.5  Score=38.02  Aligned_cols=102  Identities=4%  Similarity=-0.109  Sum_probs=55.2

Q ss_pred             EEEEEeeeCCeEEEEECCCCceee-cccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCce
Q 016552          254 KLCLVNVKGAEGAVYDVVANTWDD-MREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGAR  331 (387)
Q Consensus       254 ~lyv~gg~~~~i~~yD~~~~~W~~-~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~  331 (387)
                      .+.+.++.+..+.++|+.+.+-.. +....... ...+++.. +++.++.++.++.+..||..+..-..  .+.......
T Consensus       324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~-~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~--~l~gH~~~V  400 (524)
T 2j04_B          324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS-NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH--PLVSRETTI  400 (524)
T ss_dssp             CEEEEEETTSEEEEECGGGHHHHCEEEEECSCC-SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE--EEEECSSCE
T ss_pred             eEEEEeccCCeEEEEECCCCCcccccccccccC-cccceEeCCCcCeEEEeCCCCcEEEEECcccccce--eeecCCCce
Confidence            676777777889999987643211 11001100 11234443 46677777777789999987753211  111112222


Q ss_pred             EE--EEeCCeEEEEecCCCeEEEEeccCC
Q 016552          332 HA--AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       332 ~~--~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..  ..-+|+.++.|+....+.++|+.+.
T Consensus       401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          401 TAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             EEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            22  2335667777777777777776543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=88.55  E-value=12  Score=38.74  Aligned_cols=143  Identities=8%  Similarity=-0.119  Sum_probs=73.5

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ++++.+.|+.+.        .+.+||..+.+    -....  +.. .  .....+...|++.+.++.+..+.++|+.+++
T Consensus        28 dg~~lAsgs~Dg--------~I~lw~~~~~~----~~~~~--~~~-~--~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           28 TQNLLAIATVTG--------EVHIYGQQQVE----VVIKL--EDR-S--AIKEMRFVKGIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             TTTEEEEEETTS--------EEEEECSTTCE----EEEEC--SSC-C--CEEEEEEETTTEEEEEETTCEEEEEETTTCS
T ss_pred             CCCEEEEEeCCC--------EEEEEeCCCcE----EEEEc--CCC-C--CEEEEEEcCCCEEEEEECcCeEEEEECCCCc
Confidence            455566665543        66777766554    22211  111 0  0122333346644445555789999998765


Q ss_pred             eeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEcc---------ccccccCce-EEEEe--CCeEE
Q 016552          275 WDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVV---------KSDLLKGAR-HAAAG--GGRVC  341 (387)
Q Consensus       275 W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~---------~~~~~~~~~-~~~~~--~g~i~  341 (387)
                      -...   ........++++ .++..++.+..++.|..||.++..-....         .+....... ++...  ++.++
T Consensus        91 ~~~~---~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           91 VLTT---VFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             EEEE---EECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             EEEE---EcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            3211   110101112222 24566667777889999999887542111         111111222 22222  23577


Q ss_pred             EEecCCCeEEEEeccCC
Q 016552          342 AVCENGGGIVVVDVKAA  358 (387)
Q Consensus       342 v~gg~~~~i~~~d~~~~  358 (387)
                      ++|.....+ +||+.+.
T Consensus       168 ~~g~~dg~v-lWd~~~~  183 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVEN  183 (902)
T ss_dssp             EEECSSCEE-EEETTTT
T ss_pred             EEEeCCCcE-EEECCCC
Confidence            777777777 9998854

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=88.50  E-value=21  Score=35.51  Aligned_cols=204  Identities=11%  Similarity=0.067  Sum_probs=97.1

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCC-----CCCCcceEEEE
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQF-----SSDVAKSVEKW  219 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~v~~y  219 (387)
                      -+|+.+++.....  ......++++|..+++......++.......+-.-+|+.++++..+...     +......+..+
T Consensus       130 PDG~~la~~~~~~--G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~  207 (695)
T 2bkl_A          130 WDGKKVAFAQKPN--AADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH  207 (695)
T ss_dssp             TTSSEEEEEEEET--TCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred             CCCCEEEEEECCC--CCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence            3555555443222  1223578999999998752112222111111222355554444432210     00123468888


Q ss_pred             ECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEee-eC---CeEEEEECCCCceeecccccccCCCCcEEEEeC
Q 016552          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNV-KG---AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDE  295 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg-~~---~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~  295 (387)
                      +..++...  =..+...+..... .......-||+..++.. ..   ..++.+|..+..|..+..... .  ....+..+
T Consensus       208 ~l~t~~~~--~~lv~~~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~--~~~~~~~~  281 (695)
T 2bkl_A          208 TLGTEPSK--DTVVHERTGDPTT-FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-A--KYEVHAWK  281 (695)
T ss_dssp             ETTSCGGG--CEEEECCCCCTTC-EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-C--CEEEEEET
T ss_pred             ECCCCchh--ceEEEecCCCCEE-EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-c--eEEEEecC
Confidence            88877611  1122211111000 00112223565333322 22   367777777777877654211 1  11222245


Q ss_pred             CeEEEEeC---CCCeEEEEeCCCCc---eeEccccccccCceEEEEeCCeEEEEecCC--CeEEEEecc
Q 016552          296 EVLYGIDE---NSCTLSRYDEVMDD---WKEVVKSDLLKGARHAAAGGGRVCAVCENG--GGIVVVDVK  356 (387)
Q Consensus       296 ~~ly~~~~---~~~~l~~yd~~~~~---W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~--~~i~~~d~~  356 (387)
                      |.+|+...   ..+.|+.+|.++..   |+.+........-..+...++++++....+  ..++++|..
T Consensus       282 g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          282 DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence            55776654   24689999997764   887654321111111223378887776533  466777764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=88.43  E-value=13  Score=37.34  Aligned_cols=145  Identities=8%  Similarity=-0.057  Sum_probs=79.5

Q ss_pred             CCccEEEeccCC--c-eeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC--CccccCeEEcCCCC
Q 016552          163 LTRPLIFDPICR--T-WTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN--GEKNSRWEKTGELK  237 (387)
Q Consensus       163 ~~~~~vyd~~t~--~-W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~~~~~W~~~~~~p  237 (387)
                      ..+++++|..+.  . |+.+.+-....... ....++.||+....+.     ....+.++|..+  ..    |..+-+-.
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~-----~~~~l~~~d~~~~~~~----~~~l~~~~  362 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA-----PLKKIVRVDLSGSTPR----FDTVVPES  362 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC-----TTCEEEEEECSSSSCE----EEEEECCC
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC-----CCCEEEEEeCCCCccc----cEEEecCC
Confidence            457899999887  6 88775433222222 2345667877754321     234688899877  56    98876332


Q ss_pred             CCCccccceEEEEECCEEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEE--eCCeEEEEeCC---CCeEEE
Q 016552          238 DGRFSREAIDAVGWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDEN---SCTLSR  310 (387)
Q Consensus       238 ~~~~~~~~~~~~~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~~---~~~l~~  310 (387)
                      ....    ......++.+++....+  ..++.+|+..+.-..+..  +.......+..  .++.|++...+   .+.++.
T Consensus       363 ~~~l----~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  436 (741)
T 1yr2_A          363 KDNL----ESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA  436 (741)
T ss_dssp             SSEE----EEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred             CCeE----EEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            2111    12234478887776554  467788875544444431  11100111111  23345544321   257999


Q ss_pred             EeCCCCceeEccc
Q 016552          311 YDEVMDDWKEVVK  323 (387)
Q Consensus       311 yd~~~~~W~~v~~  323 (387)
                      ||.++++.+.+..
T Consensus       437 ~d~~tg~~~~l~~  449 (741)
T 1yr2_A          437 LDPATAKTTPWEP  449 (741)
T ss_dssp             EETTTTEEEECSC
T ss_pred             EECCCCcEEEEec
Confidence            9999888766643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=87.48  E-value=16  Score=32.98  Aligned_cols=135  Identities=10%  Similarity=0.029  Sum_probs=71.2

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-E
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-M  293 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~  293 (387)
                      .+.++|+.+.+    -......... ..   ..+..-+|++.+.+. ...+.+++..++.-..............+++ .
T Consensus       158 ~i~iwd~~~~~----~~~~~~~~~~-V~---~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs  228 (365)
T 4h5i_A          158 IMRIIDPSDLT----EKFEIETRGE-VK---DLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFI  228 (365)
T ss_dssp             EEEEEETTTTE----EEEEEECSSC-CC---EEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred             EEEEeECCCCc----EEEEeCCCCc-eE---EEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence            78899998887    4332211111 10   112223677655544 3467888877765432211011111111222 3


Q ss_pred             eCCeEEEEeCCCC----eEEEEeCCCCceeEccc--cccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 DEEVLYGIDENSC----TLSRYDEVMDDWKEVVK--SDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~~~~~----~l~~yd~~~~~W~~v~~--~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++..++.+..++    .++.||...........  .........  .+.-+|++++.|+....|.+||..+.
T Consensus       229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence            4666666554222    47778877665544322  122222222  23457888888888888999999864

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=87.26  E-value=10  Score=35.92  Aligned_cols=198  Identities=14%  Similarity=0.100  Sum_probs=101.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceee--CCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF--GPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~--l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++++|++.|         +.+|+||..+++..+  .+-++  . .-++...++++|++-|.          ..+.||..+
T Consensus       158 ~~~~yfFkG---------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~----------~y~rfd~~~  215 (460)
T 1qhu_A          158 DEGILFFQG---------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN----------QFLRFNPVS  215 (460)
T ss_dssp             SSEEEEEET---------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT----------EEEEECTTT
T ss_pred             CCeEEEEec---------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECC----------EEEEEcCcc
Confidence            678888887         357999998876543  12222  2 23444557899999775          335566544


Q ss_pred             Ccccc--------CeEEcCCCCCC--------------Ccc-ccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceee-
Q 016552          224 GEKNS--------RWEKTGELKDG--------------RFS-REAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDD-  277 (387)
Q Consensus       224 ~~~~~--------~W~~~~~~p~~--------------~~~-~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~-  277 (387)
                      .+..-        .|-..+....+              ... .....++.  .+|++|++-|  ...+.||...+.+.. 
T Consensus       216 ~~v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--~~yWR~~~~~~~~~p~  293 (460)
T 1qhu_A          216 GEVPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--SHYWRLDTNRDGWHSW  293 (460)
T ss_dssp             CCCCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--TEEEECTTGGGCCCCE
T ss_pred             CcccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--CEEEEEecCCCCcCcc
Confidence            32100        02222111000              000 00122333  4689999876  357777776543321 


Q ss_pred             -ccc---ccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccc----------cccc---cC-ceEEEE-eCC
Q 016552          278 -MRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVK----------SDLL---KG-ARHAAA-GGG  338 (387)
Q Consensus       278 -~~~---~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~----------~~~~---~~-~~~~~~-~~g  338 (387)
                       +..   .+|..  ..++...++++|++-+  ...++|+..++ .+.+..          +|..   .. .+++.. ..+
T Consensus       294 ~Is~~WpglP~~--IDAAf~~~~~~yfFkG--~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~~~~  368 (460)
T 1qhu_A          294 PIAHQWPQGPST--VDAAFSWEDKLYLIQD--TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSS  368 (460)
T ss_dssp             EGGGTCTTSCSS--CSEEEEETTEEEEEET--TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCC
T ss_pred             chhhhccCCCCC--CcEEEEECCeEEEEeC--CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEeCCCC
Confidence             111   11111  2344456789999954  47888986542 222221          1111   11 222222 458


Q ss_pred             eEEEEecCCCeEEEEeccCCCCCCceEE--eCCCCceeE
Q 016552          339 RVCAVCENGGGIVVVDVKAAAAPTIFVV--DTPLGFEAL  375 (387)
Q Consensus       339 ~i~v~gg~~~~i~~~d~~~~~~~~~W~~--~~p~~~~~~  375 (387)
                      ++|+|.|  +..+.||....++ .++..  ..|...+++
T Consensus       369 ktyfFkG--~~ywryd~~~~Pr-~i~~~~~gi~~~vdAa  404 (460)
T 1qhu_A          369 RLHIMAG--RRLWWLDLKSGAQ-ATWTELPWPHEKVDGA  404 (460)
T ss_dssp             EEEEEET--TEEEEEEGGGGGG-CCCEEECCSCSCCSEE
T ss_pred             EEEEEEC--CEEEEEECCCCcc-chhhhCCCCCCCcCEE
Confidence            9999954  4677888875422 34432  234444443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=86.51  E-value=5.3  Score=36.66  Aligned_cols=105  Identities=8%  Similarity=-0.020  Sum_probs=56.2

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CC-eEEEEeCCCCeEEEEeCCCCceeEcccc-----
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EE-VLYGIDENSCTLSRYDEVMDDWKEVVKS-----  324 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~-~ly~~~~~~~~l~~yd~~~~~W~~v~~~-----  324 (387)
                      ++++.+.++.+..+.++|+.++.=....  ........+++.. ++ .+++.+..++.+..||..+..-......     
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~  232 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAG--YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK  232 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEE--EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeee--cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence            6778788888888999998665321111  1111112234443 33 4666666788999999887643221100     


Q ss_pred             ----------cc--------ccCc-eEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          325 ----------DL--------LKGA-RHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       325 ----------~~--------~~~~-~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                                +.        .... ..+.  ..+++.++.+..+..+.++|+...
T Consensus       233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence                      00        0011 1111  246777777777888999988754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=86.29  E-value=18  Score=32.44  Aligned_cols=138  Identities=11%  Similarity=0.055  Sum_probs=66.0

Q ss_pred             ceEEEEECC-CCccccCeEEcCCC--CC-CCccccceEEEEECC-EEEEEeeeCCeEEEEE--CCCCcee----eccccc
Q 016552          214 KSVEKWDLM-NGEKNSRWEKTGEL--KD-GRFSREAIDAVGWKG-KLCLVNVKGAEGAVYD--VVANTWD----DMREGM  282 (387)
Q Consensus       214 ~~v~~yd~~-~~~~~~~W~~~~~~--p~-~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD--~~~~~W~----~~~~~~  282 (387)
                      +.+.+||.. +++    ...+...  +. ....  .+.+..-+| .+|+.+...+.+.+|+  .++++..    .+.. .
T Consensus       167 ~~v~~~~~~~~g~----~~~~~~~~~~~~g~~p--~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~-~  239 (365)
T 1jof_A          167 NKLWTHRKLASGE----VELVGSVDAPDPGDHP--RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL-I  239 (365)
T ss_dssp             TEEEEEEECTTSC----EEEEEEEECSSTTCCE--EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES-S
T ss_pred             CEEEEEEECCCCC----EEEeeeEecCCCCCCC--CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc-C
Confidence            378889987 666    5543221  11 1111  022223356 4676654445677765  4455542    2222 2


Q ss_pred             ccCC---C--------CcEEE-E-eCC-eEEEEeCCCC-----eEEEEeCC-CCceeEccc-cc--c-ccCceEEEE---
Q 016552          283 VRGW---R--------GPVAA-M-DEE-VLYGIDENSC-----TLSRYDEV-MDDWKEVVK-SD--L-LKGARHAAA---  335 (387)
Q Consensus       283 ~~~~---~--------~~~~~-~-~~~-~ly~~~~~~~-----~l~~yd~~-~~~W~~v~~-~~--~-~~~~~~~~~---  335 (387)
                      +.+.   .        ...++ + -+| .||+.....+     .|.+||.+ +++...+.. .+  . .....+...   
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~  319 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence            2221   1        12233 2 244 5776543223     79999875 555544221 11  1 111222222   


Q ss_pred             eCCeEEEEecCCCeEEEEeccCC
Q 016552          336 GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       336 ~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      -+..|++.+.+++.+.+|+++..
T Consensus       320 dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEEcCCCeEEEEEEchh
Confidence            24455555455688999988743

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=85.88  E-value=30  Score=34.48  Aligned_cols=199  Identities=11%  Similarity=0.080  Sum_probs=98.4

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCC-EEEEEecCCCC--------CCCCCcc
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRG-AVYVASGIGSQ--------FSSDVAK  214 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~--------~~~~~~~  214 (387)
                      -+|+.++++....  ......++++|..+++...... .... ....+- -++ .||... .+..        .......
T Consensus       134 PDg~~la~~~~~~--G~~~~~i~v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~  208 (710)
T 2xdw_A          134 EDGEYFAYGLSAS--GSDWVTIKFMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQ  208 (710)
T ss_dssp             TTSSEEEEEEEET--TCSCEEEEEEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCC
T ss_pred             CCCCEEEEEEcCC--CCceEEEEEEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEE-ECCccccccccccccCCCC
Confidence            3555555543222  1122368999999998776421 1111 111222 244 454443 2211        0002234


Q ss_pred             eEEEEECCCCccccCeE--EcCCCCC-CCccccceEEEEECCEEEEEeee-----CCeEEEEECCC------C--ceeec
Q 016552          215 SVEKWDLMNGEKNSRWE--KTGELKD-GRFSREAIDAVGWKGKLCLVNVK-----GAEGAVYDVVA------N--TWDDM  278 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~--~~~~~p~-~~~~~~~~~~~~~~g~lyv~gg~-----~~~i~~yD~~~------~--~W~~~  278 (387)
                      .+.+++..+++    -.  .+...+. +.+.  ......-||+..++...     ...++.+|..+      .  .+..+
T Consensus       209 ~v~~~~l~t~~----~~~~~v~~~~~~~~~~--~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          209 KLYYHVLGTDQ----SEDILCAEFPDEPKWM--GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             EEEEEETTSCG----GGCEEEECCTTCTTCE--EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             EEEEEECCCCc----ccceEEeccCCCCeEE--EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence            57888888776    32  2211111 1110  01222336653333322     35788899876      4  57766


Q ss_pred             ccccccCCCCcEEEEeCCeEEEEeCC---CCeEEEEeCCCC---ceeEccccccccCceEEEEe-CCeEEEEecCC--Ce
Q 016552          279 REGMVRGWRGPVAAMDEEVLYGIDEN---SCTLSRYDEVMD---DWKEVVKSDLLKGARHAAAG-GGRVCAVCENG--GG  349 (387)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~ly~~~~~---~~~l~~yd~~~~---~W~~v~~~~~~~~~~~~~~~-~g~i~v~gg~~--~~  349 (387)
                      ..... . ........|+.||+....   ...|+.+|.++.   .|+.+........-..+... ++.+++....+  ..
T Consensus       283 ~~~~~-~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          283 IDNFE-G-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             ECSSS-S-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eCCCC-c-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            54211 1 112233457788888653   347999999875   58876543221111122334 67777766433  46


Q ss_pred             EEEEecc
Q 016552          350 IVVVDVK  356 (387)
Q Consensus       350 i~~~d~~  356 (387)
                      ++++|+.
T Consensus       361 l~~~~~~  367 (710)
T 2xdw_A          361 LQLHDLA  367 (710)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            7888874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=85.81  E-value=19  Score=37.82  Aligned_cols=98  Identities=15%  Similarity=0.044  Sum_probs=53.5

Q ss_pred             eEE-EEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE
Q 016552          215 SVE-KWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       215 ~v~-~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      .++ +||..+.+    -..+.... ...   ...+..-||+..+++.....+.++|+++++-..+..... +. ...++.
T Consensus       359 ~l~~~~d~~~~~----~~~l~~~~-~~~---~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~-~~-v~~~~~  428 (1045)
T 1k32_A          359 DFLGIYDYRTGK----AEKFEENL-GNV---FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE-AM-ITDFTI  428 (1045)
T ss_dssp             EEEEEEETTTCC----EEECCCCC-CSE---EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SC-CCCEEE
T ss_pred             ceEEEEECCCCC----ceEecCCc-cce---eeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC-CC-ccceEE
Confidence            677 88988877    66554111 111   112223367766665555689999999887655532111 11 112222


Q ss_pred             -eCCeEEEEeCC----------CCeEEEEeCCCCceeEcc
Q 016552          294 -DEEVLYGIDEN----------SCTLSRYDEVMDDWKEVV  322 (387)
Q Consensus       294 -~~~~ly~~~~~----------~~~l~~yd~~~~~W~~v~  322 (387)
                       -+|+.+++...          .+.+++||.++.+...+.
T Consensus       429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~  468 (1045)
T 1k32_A          429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  468 (1045)
T ss_dssp             CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             CCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence             34553333322          137999999987644443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=85.41  E-value=28  Score=34.08  Aligned_cols=185  Identities=15%  Similarity=0.007  Sum_probs=98.6

Q ss_pred             CCccEEEeccCCceeeCCCCCCCCcceeEEE----eCCEEEEEecCCCC--CC-------CCCcceEEEEECCCCccccC
Q 016552          163 LTRPLIFDPICRTWTFGPELVTPRRWCAAGC----SRGAVYVASGIGSQ--FS-------SDVAKSVEKWDLMNGEKNSR  229 (387)
Q Consensus       163 ~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~----~~~~iyv~GG~~~~--~~-------~~~~~~v~~yd~~~~~~~~~  229 (387)
                      ...+.+.|+.+.+=.++-.+|....-+..+.    -++.+|+.+-....  .+       ....+.+-+.|.++.+..  
T Consensus       111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~--  188 (595)
T 1fwx_A          111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA--  188 (595)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE--
T ss_pred             CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE--
Confidence            3579999999987555334554333344443    24578877533110  01       123346788899887744  


Q ss_pred             eEEcC-CCCCCCccccceEEEEECCE-EEEEeeeC-------------------------------------CeEEEEEC
Q 016552          230 WEKTG-ELKDGRFSREAIDAVGWKGK-LCLVNVKG-------------------------------------AEGAVYDV  270 (387)
Q Consensus       230 W~~~~-~~p~~~~~~~~~~~~~~~g~-lyv~gg~~-------------------------------------~~i~~yD~  270 (387)
                      |+..- .-|..       ..+..+|+ +|+.....                                     +.+-+.|.
T Consensus       189 ~qI~Vgg~pd~-------~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~  261 (595)
T 1fwx_A          189 WQVLVSGNLDN-------CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG  261 (595)
T ss_dssp             EEEEESSCCCC-------EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred             EEEEeCCCccc-------eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeC
Confidence            65332 22211       12222332 33322110                                     35778888


Q ss_pred             CCCceee-cccccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCc-ee---------EccccccccC-ceEEEEe
Q 016552          271 VANTWDD-MREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYDEVMDD-WK---------EVVKSDLLKG-ARHAAAG  336 (387)
Q Consensus       271 ~~~~W~~-~~~~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~~~~-W~---------~v~~~~~~~~-~~~~~~~  336 (387)
                      .+.+.+. +.. .+.+-.-+++.+  .|..+|+-+..++.+.+||.++.. +.         .+...+.-.+ .+....-
T Consensus       262 ~~~~~~~~~~~-Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~  340 (595)
T 1fwx_A          262 RKEASSLFTRY-IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG  340 (595)
T ss_dssp             SGGGCCSSEEE-EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT
T ss_pred             cccCCceeEEE-EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC
Confidence            8744333 111 222222233333  244577776667899999998642 10         1112222222 3444455


Q ss_pred             CCeEEEEecCCCeEEEEeccC
Q 016552          337 GGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       337 ~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +|.+|+.-.-.+.+.+||+++
T Consensus       341 dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          341 RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             TSEEEEEETTTTEEEEEEHHH
T ss_pred             CCeEEEEEecCCcEEEEEhhH
Confidence            678888877788899999885

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=85.40  E-value=26  Score=34.91  Aligned_cols=145  Identities=14%  Similarity=0.079  Sum_probs=79.8

Q ss_pred             CccEEEeccCC--ceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICR--TWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ++++++|..+.  .|+.+.+-.... .......++++|+....+.     ....+.++|..+.... .|+.+.+-...  
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~l~~~t~~~~-----~~~~l~~~d~~~~~~~-~~~~l~~~~~~--  329 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDAD-VSLVDNKGSTLYLLTNRDA-----PNRRLVTVDAANPGPA-HWRDLIPERQQ--  329 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC-----TTCEEEEEETTSCCGG-GCEEEECCCSS--
T ss_pred             cEEEEEECCCCCCceEEEeCCCCce-EEEEeccCCEEEEEECCCC-----CCCEEEEEeCCCCCcc-ccEEEecCCCC--
Confidence            57888888765  677664322211 1223445788988865432     2347788888764310 18876533221  


Q ss_pred             cccceEEEEECCEEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEEE----eCCeEEEEeCC---CCeEEEEe
Q 016552          242 SREAIDAVGWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAAM----DEEVLYGIDEN---SCTLSRYD  312 (387)
Q Consensus       242 ~~~~~~~~~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~----~~~~ly~~~~~---~~~l~~yd  312 (387)
                      .   ......++.|++....+  ..+.++|+..+....+..  +..  +....+    .++.|++....   -+.++.||
T Consensus       330 ~---~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~--p~~--~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          330 V---LTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVAL--PGL--GSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             C---EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECC--SSS--SEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             E---EEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeec--CCC--ceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            1   22334456666554443  468899988665555532  111  111111    23455554321   26899999


Q ss_pred             CCCCceeEcccc
Q 016552          313 EVMDDWKEVVKS  324 (387)
Q Consensus       313 ~~~~~W~~v~~~  324 (387)
                      .++++.+.+...
T Consensus       403 ~~~g~~~~l~~~  414 (693)
T 3iuj_A          403 PKSGAISLYRAS  414 (693)
T ss_dssp             TTTCCEEEEECC
T ss_pred             CCCCeEEEEEeC
Confidence            998887776543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.41  E-value=24  Score=32.18  Aligned_cols=147  Identities=13%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             cEEEeccC--CceeeCCCCCCCCcceeEEEe---CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCC---C
Q 016552          166 PLIFDPIC--RTWTFGPELVTPRRWCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGEL---K  237 (387)
Q Consensus       166 ~~vyd~~t--~~W~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~---p  237 (387)
                      +++++...  .+|+...+........+.+..   ++.||+.+....     .-..+...+-...+    |+.+...   +
T Consensus        33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~-----~g~gl~~s~D~G~t----W~~~~~~~~~~  103 (394)
T 3b7f_A           33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH-----LGPTVFRSDDGGGN----WTEATRPPAFN  103 (394)
T ss_dssp             EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-------CCEEEEEESSTTSC----CEECSBCCCCC
T ss_pred             eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC-----CCccEEEeCCCCCC----ceECCccccCC
Confidence            67777655  789876422222223333333   467888754321     00134445445566    9988632   2


Q ss_pred             CCCc-----cccceEEEEE-----CCEEEEEeeeCCeEEEEECCCCceeeccccc--cc--------------CCCCcEE
Q 016552          238 DGRF-----SREAIDAVGW-----KGKLCLVNVKGAEGAVYDVVANTWDDMREGM--VR--------------GWRGPVA  291 (387)
Q Consensus       238 ~~~~-----~~~~~~~~~~-----~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~--~~--------------~~~~~~~  291 (387)
                      ....     ......++..     .+.+|+.+.. ..++..+-...+|+.+....  +.              ......+
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~-ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i  182 (394)
T 3b7f_A          104 KAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP-QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSI  182 (394)
T ss_dssp             CCC----CCCCCEEEEEEECCTTSTTCEEEEEET-TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEE
T ss_pred             CcccccccccccceeEEEeCCCCCCCEEEEEecC-CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEE
Confidence            1100     0001222333     4778876543 36778877788999875311  10              0011234


Q ss_pred             EEe---CCeEEEEeCCCCeEEEEeCCCCceeEccc
Q 016552          292 AMD---EEVLYGIDENSCTLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       292 ~~~---~~~ly~~~~~~~~l~~yd~~~~~W~~v~~  323 (387)
                      ++.   .+.||+... .+.|+..+....+|+.+..
T Consensus       183 ~~d~~~~~~l~vg~~-~ggl~~s~DgG~tW~~~~~  216 (394)
T 3b7f_A          183 LVDPRDPKHLYIGMS-SGGVFESTDAGTDWKPLNR  216 (394)
T ss_dssp             EECTTCTTCEEEEEE-TBEEEEESSTTSSCEECCT
T ss_pred             EECCCCCCEEEEEEC-CCCEEEECCCCCCceECCC
Confidence            443   356887643 3568888888999998753

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=83.58  E-value=36  Score=33.59  Aligned_cols=99  Identities=11%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             eEEEEECCCCccccCe-EEcCCCCCCCccccce--EEEEECCEEEEEeeeC----CeEEEEECCCCceeecccccccCCC
Q 016552          215 SVEKWDLMNGEKNSRW-EKTGELKDGRFSREAI--DAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWR  287 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W-~~~~~~p~~~~~~~~~--~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~  287 (387)
                      .+.++|..+.+    - ..+.............  .+..-||++.+.....    ..+..+|+.+++...+-.....++.
T Consensus       229 ~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  304 (723)
T 1xfd_A          229 SLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWL  304 (723)
T ss_dssp             EEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             EEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEE
Confidence            78889988776    3 3333211000000001  1222377765443221    4688899988876544221111221


Q ss_pred             C---cEEEE--eCCeEEEE-eCCCC------eEEEEe-CCCCc
Q 016552          288 G---PVAAM--DEEVLYGI-DENSC------TLSRYD-EVMDD  317 (387)
Q Consensus       288 ~---~~~~~--~~~~ly~~-~~~~~------~l~~yd-~~~~~  317 (387)
                      .   ..++.  .|..|++. ...++      .|+.|| ..+..
T Consensus       305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            1   12222  34446665 33344      588898 45544

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=83.56  E-value=18  Score=30.10  Aligned_cols=145  Identities=16%  Similarity=0.082  Sum_probs=75.3

Q ss_pred             EEECCEEEEEecccCCCCCCCCccEEEeccC---------CceeeCCCCCCCCcceeEEEe--CCEEEEEecCCCCCCCC
Q 016552          143 VSLSGKLILLAATTHNFNPALTRPLIFDPIC---------RTWTFGPELVTPRRWCAAGCS--RGAVYVASGIGSQFSSD  211 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t---------~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  211 (387)
                      +...|.+|++-|.         .+|+++...         ..|..||   .  ..-++...  ++++|++-|.       
T Consensus        30 ~~~~g~~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~wp~Lp---~--~iDAa~~~~~~~~iyfFkG~-------   88 (207)
T 1pex_A           30 TSLRGETMIFKDR---------FFWRLHPQQVDAELFLTKSFWPELP---N--RIDAAYEHPSHDLIFIFRGR-------   88 (207)
T ss_dssp             EEETTEEEEEETT---------EEEEECSSSSCCEEEEHHHHCTTSC---S--SCCEEEEETTTTEEEEEETT-------
T ss_pred             EeCCCcEEEEECC---------EEEEEeCCCcCCCceehhHhccCCC---C--CccEEEEeccCCcEEEEccC-------
Confidence            3478999999873         355555433         2343333   2  12222222  5899999663       


Q ss_pred             CcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeec-ccccccCC-
Q 016552          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDM-REGMVRGW-  286 (387)
Q Consensus       212 ~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~~~~~-  286 (387)
                         ..++|+..+-...+ =..+..+..+... ....+|+.   +|++|++.|  +..+.||..+++=..- +..+...| 
T Consensus        89 ---~~w~~~~~~~~~gy-Pk~I~~~GlP~~~-~~IDAA~~~~~~gk~yfFkG--~~ywr~d~~~~~~d~gyPr~i~~~~~  161 (207)
T 1pex_A           89 ---KFWALNGYDILEGY-PKKISELGLPKEV-KKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFP  161 (207)
T ss_dssp             ---EEEEESTTCCCTTC-SEESTTTTCCTTC-CCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred             ---EEEEEeCCeeccCC-ceeccccCCCCCC-ccccEEEEeCCCCEEEEEeC--CEEEEEeCcCccccCCCCccHHHcCC
Confidence               45666543222000 1223322111100 11334443   489999976  4689999876532110 00000011 


Q ss_pred             ----CCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          287 ----RGPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       287 ----~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                          ...++...+|++|++-+  ...+.||..+..
T Consensus       162 Gip~~iDaAf~~~g~~YfFkg--~~y~rf~~~~~~  194 (207)
T 1pex_A          162 GIGDKVDAVYEKNGYIYFFNG--PIQFEYSIWSNR  194 (207)
T ss_dssp             TSCSCCSEEEEETTEEEEEET--TEEEEEETTTTE
T ss_pred             CCCCCccEEEEcCCcEEEEEC--CEEEEEeCCccE
Confidence                12344456889999954  478999987764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=81.75  E-value=54  Score=35.09  Aligned_cols=136  Identities=10%  Similarity=0.028  Sum_probs=80.0

Q ss_pred             CcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeeccc-ccccCCCCcE
Q 016552          212 VAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMRE-GMVRGWRGPV  290 (387)
Q Consensus       212 ~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~-~~~~~~~~~~  290 (387)
                      ....+.+|+....+    .+.+...+..-.   ..+.+.++|+|.+  +-+..+.+||...++--.... ..+. .....
T Consensus       862 ~~Gri~vf~v~~~k----L~lv~~~~v~g~---v~al~~~~g~Lla--~ig~~l~vy~l~~~~~L~~~~~~~~~-i~~~~  931 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGK----LQTVAEKEVKGA---VYSMVEFNGKLLA--SINSTVRLYEWTTEKELRTECNHYNN-IMALY  931 (1158)
T ss_dssp             CCEEEEEEEEETTE----EEEEEEEEESSC---EEEEEEETTEEEE--EETTEEEEEEECTTSCEEEEEEECCC-SCEEE
T ss_pred             CceEEEEEEEECCE----EEEEEEEEcCCc---CEEEeeeCCEEEE--EcCCEEEEEECCCCceEEEEeecccc-EEEEE
Confidence            34578888887666    776654332211   1446678896544  444689999987664222110 0000 00112


Q ss_pred             EEEeCCeEEEEeCCCC-eEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          291 AAMDEEVLYGIDENSC-TLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       291 ~~~~~~~ly~~~~~~~-~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +.+.++.+++-+-..+ .+..|+++.++-..+......+...++..+++.-++.+...++++++....
T Consensus       932 l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          932 LKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             EeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence            3355777766554322 477899999988888877666655555555544445545567788776654

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=80.68  E-value=12  Score=31.70  Aligned_cols=61  Identities=13%  Similarity=0.028  Sum_probs=37.1

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceee-----cccccccC------CCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCC
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDD-----MREGMVRG------WRGPVAAM--DEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~-----~~~~~~~~------~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                      ++++|++-|  ...++||..+++-..     +..+.+..      ....++..  .++++|++-+  ..-+.||..++
T Consensus       129 ~~k~yfFkG--~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg--~~Ywr~d~~~~  202 (227)
T 3lp9_A          129 GKEVYLFKG--DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD--DHYARVKVTPX  202 (227)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET--TEEEEEECCSS
T ss_pred             CCEEEEEEC--CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC--CEEEEEECCcc
Confidence            589999977  468999987653211     11112210      11223333  3579999964  47899998776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=80.58  E-value=34  Score=31.16  Aligned_cols=192  Identities=10%  Similarity=-0.058  Sum_probs=87.2

Q ss_pred             CCEEEEEecccCC--CCCCCCccEEEeccCCceeeCCCCC---------CCCcceeEEEeCCEEEEEecCCCCCCCCCcc
Q 016552          146 SGKLILLAATTHN--FNPALTRPLIFDPICRTWTFGPELV---------TPRRWCAAGCSRGAVYVASGIGSQFSSDVAK  214 (387)
Q Consensus       146 ~~~l~v~GG~~~~--~~~~~~~~~vyd~~t~~W~~l~~~p---------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  214 (387)
                      +..+|+..-....  .....+.+.+||+.|.+-..--+++         .|+ ..+....+..+|+..-.       ..+
T Consensus        77 g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~~-------~~~  148 (373)
T 2mad_H           77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFA-------AGP  148 (373)
T ss_pred             CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEecC-------CCC
Confidence            4467876421110  0112356789999876433211122         111 11222234568887321       124


Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEE-ECCEEEEEeeeCCeEEEEECCCCcee-ecc--cccccCC---C
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG-WKGKLCLVNVKGAEGAVYDVVANTWD-DMR--EGMVRGW---R  287 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~-~~g~lyv~gg~~~~i~~yD~~~~~W~-~~~--~~~~~~~---~  287 (387)
                      .+.++| .+++    -... -.+.+.     +.... -+.+.|+....+..+..+|. +++-. ...  .......   .
T Consensus       149 ~v~viD-~t~~----~~~~-~i~~~~-----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~  216 (373)
T 2mad_H          149 AVGLVV-QGGS----SDDQ-LLSSPT-----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT  216 (373)
T ss_pred             eEEEEE-CCCC----EEeE-EcCCCc-----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceee
Confidence            789999 8777    4322 022221     11122 23344444333346777777 44322 111  0000000   0


Q ss_pred             CcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc---------c-ccCc---eEEEEeCCeEEEEecC--------
Q 016552          288 GPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD---------L-LKGA---RHAAAGGGRVCAVCEN--------  346 (387)
Q Consensus       288 ~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~---------~-~~~~---~~~~~~~g~i~v~gg~--------  346 (387)
                      .+.....++++|+.. ..+.+++.|.+++.-..+...+         . ....   ..+..-++++|+....        
T Consensus       217 ~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~  295 (373)
T 2mad_H          217 QPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA  295 (373)
T ss_pred             cceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence            111223355666665 3567888888665322222110         0 1111   2222234778887542        


Q ss_pred             -CCeEEEEeccCC
Q 016552          347 -GGGIVVVDVKAA  358 (387)
Q Consensus       347 -~~~i~~~d~~~~  358 (387)
                       ++.|.++|..+.
T Consensus       296 ~~~~V~VID~~t~  308 (373)
T 2mad_H          296 AAKEVTSVTGLVG  308 (373)
T ss_pred             CCCeEEEEECCCC
Confidence             357999999865

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=80.24  E-value=38  Score=31.62  Aligned_cols=63  Identities=10%  Similarity=0.139  Sum_probs=39.0

Q ss_pred             eCCeEEEEeCC---------CCeEEEEeCCCCceeEccccccccCceE-EEEeCCe--EEEEecCCCeEEEEeccCC
Q 016552          294 DEEVLYGIDEN---------SCTLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~~~---------~~~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~--i~v~gg~~~~i~~~d~~~~  358 (387)
                      .++++|+....         ++.|.++|.++.+  .+...+-...+.. .+.-+|+  +|+.....+.+.++|..+.
T Consensus       329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            45789997531         3479999988763  4433332222322 3344555  6666556899999999943

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-04

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 35/264 (13%), Positives = 63/264 (23%), Gaps = 38/264 (14%)

Query: 107 PVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAA----TTHNFNPA 162
           P    W P     P  P                  +   SG++++ ++            
Sbjct: 6   PGLGRWGPTI-DLPIVPAA--------------AAIEPTSGRVLMWSSYRNDAFGGSPGG 50

Query: 163 LTRPLIFDPICRTWTFGPELVTPR-RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL 221
           +T    +DP     +     VT    +C      G     +G       + AK    +D 
Sbjct: 51  ITLTSSWDPSTGIVSDRTVTVTKHDMFCP-----GISMDGNGQIVVTGGNDAKKTSLYDS 105

Query: 222 MNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREG 281
            +       +          +  +   V   G      V    G VY   + TW  +   
Sbjct: 106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA 165

Query: 282 -------------MVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLK 328
                                +    +  ++    ++     Y     D K   K    +
Sbjct: 166 KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 225

Query: 329 GARHAAAGGGRVCAVCENGGGIVV 352
           G    A  G  V      G  +  
Sbjct: 226 GVAPDAMCGNAVMYDAVKGKILTF 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.87
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.98
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.72
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.58
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.53
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.49
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.41
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.34
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.31
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.28
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.25
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.16
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.16
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.04
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.84
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.8
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.77
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.76
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.67
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.52
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.51
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.41
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.37
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.37
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.09
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.53
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.5
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	95.36
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.99
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.82
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.32
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.75
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	93.67
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.53
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.3
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.13
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.86
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	92.64
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.57
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	92.48
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.47
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	91.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	90.69
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.37
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.47
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	88.31
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	88.11
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	88.0
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	86.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.23
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	85.7
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	84.22
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	83.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	82.64
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	81.14
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	80.58
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	80.03

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-32  Score=247.17  Aligned_cols=255  Identities=16%  Similarity=0.235  Sum_probs=213.8

Q ss_pred             eEEeecCCCCCCCCCCeEEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCC--CCC
Q 016552           84 SLYALFSPKSNSSSTPIHLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHN--FNP  161 (387)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~--~~~  161 (387)
                      .+|++++.   .......+++||+++++|.+++++|.+               |.+|++++++++||++||....  ...
T Consensus         6 ~iyv~GG~---~~~~~~~~~~yd~~t~~W~~~~~~p~~---------------R~~~~~~~~~~~iyv~GG~~~~~~~~~   67 (288)
T d1zgka1           6 LIYTAGGY---FRQSLSYLEAYNPSNGTWLRLADLQVP---------------RSGLAGCVVGGLLYAVGGRNNSPDGNT   67 (288)
T ss_dssp             CEEEECCB---SSSBCCCEEEEETTTTEEEECCCCSSC---------------CBSCEEEEETTEEEEECCEEEETTEEE
T ss_pred             EEEEECCc---CCCCCceEEEEECCCCeEEECCCCCCc---------------cceeEEEEECCEEEEEeCcccCCCCcc
Confidence            37777764   122223488999999999999988763               6678999999999999996431  123


Q ss_pred             CCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          162 ALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       162 ~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+++++||+.+++|+++++||.+|..+++++.+++||++||...   ....+..+.||+.++.    |...+.++..+.
T Consensus        68 ~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~r~  140 (288)
T d1zgka1          68 DSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDE----WHLVAPMLTRRI  140 (288)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTE----EEECCCCSSCCB
T ss_pred             ccchhhhcccccccccccccccceecceeccccceeeEEecceec---ccccceeeeeccccCc----cccccccccccc
Confidence            467899999999999999999999999999999999999999865   3456788999999999    999998887665


Q ss_pred             cccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC-----CeEEEE
Q 016552          242 SREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS-----CTLSRY  311 (387)
Q Consensus       242 ~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~-----~~l~~y  311 (387)
                      .   +.++++++++|++||..     ..++.||+.+++|...+. .+.....+++++.++++|++++..     ..++.|
T Consensus       141 ~---~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~  216 (288)
T d1zgka1         141 G---VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA-MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY  216 (288)
T ss_dssp             S---CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEE
T ss_pred             c---ceeeeeeecceEecCcccccccceEEEeeccccccccccc-cccccccccccceeeeEEEecCccccccccceeee
Confidence            4   77888999999999875     778999999999998876 555666788888899999998743     368999


Q ss_pred             eCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE--eCCCC
Q 016552          312 DEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV--DTPLG  371 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~--~~p~~  371 (387)
                      |..+++|..+..+|..+..++++.++|+|||+||.+     ..+++||+.++    .|+.  .||.+
T Consensus       217 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~  279 (288)
T d1zgka1         217 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD----TWSEVTRMTSG  279 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT----EEEEEEECSSC
T ss_pred             eecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC----EEEECCCCCCC
Confidence            999999999998888888888999999999999842     56899999988    8996  67765

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-26  Score=207.81  Aligned_cols=206  Identities=14%  Similarity=0.215  Sum_probs=176.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCC-CCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQF-SSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~v~~yd~~~~  224 (387)
                      ++.||++||...   ..++++++||+.|++|+++++||.+|..|++++++++|||+||..... .....+++++||+.++
T Consensus         4 g~~iyv~GG~~~---~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~   80 (288)
T d1zgka1           4 GRLIYTAGGYFR---QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN   80 (288)
T ss_dssp             CCCEEEECCBSS---SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEECCcCC---CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccc
Confidence            568999999753   467889999999999999999999999999999999999999975321 1234678999999999


Q ss_pred             ccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCceeecccccccCCCCcEEEEeCCeEE
Q 016552          225 EKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLY  299 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly  299 (387)
                      +    |..+++||.+|..   +.++++++++|+++|..     ...+.||+.+++|...+. .+..+.++++++.++++|
T Consensus        81 ~----w~~~~~~p~~r~~---~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~  152 (288)
T d1zgka1          81 Q----WSPCAPMSVPRNR---IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP-MLTRRIGVGVAVLNRLLY  152 (288)
T ss_dssp             E----EEECCCCSSCCBT---CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEE
T ss_pred             c----ccccccccceecc---eeccccceeeEEecceecccccceeeeeccccCccccccc-cccccccceeeeeeecce
Confidence            9    9999999977754   88899999999998754     778999999999998877 566777888888899999


Q ss_pred             EEeCCC-----CeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCC-----CeEEEEeccCCCCCCceEE
Q 016552          300 GIDENS-----CTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENG-----GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       300 ~~~~~~-----~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~-----~~i~~~d~~~~~~~~~W~~  366 (387)
                      ++|+..     ..++.||+.+++|......+..+..+.++.++++|+++||..     .....||+.+.    +|..
T Consensus       153 ~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~----~~~~  225 (288)
T d1zgka1         153 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE----TWTF  225 (288)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT----EEEE
T ss_pred             EecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecce----eeec
Confidence            998742     468999999999999988877777788899999999998742     57899999987    8996

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.91  E-value=2.6e-23  Score=195.30  Aligned_cols=230  Identities=13%  Similarity=0.121  Sum_probs=161.5

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEE-EEECCEEEEEecccCCCCCCCCccEEEeccCCceeeC
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQL-VSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFG  179 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l  179 (387)
                      ...+|||.+++|..+++++.+ ..            +++++. +..++++|++||...      +.+.+||+.+++|.++
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~-~~------------~~~~~~~~~~~g~i~v~Gg~~~------~~~~~yd~~~~~w~~~  113 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTK-HD------------MFCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPG  113 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECS-CC------------CSSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEEC
T ss_pred             EEEEEECCCCcEeecCCCCCC-cc------------cceeEEEEecCCcEEEeecCCC------cceeEecCccCccccc
Confidence            367899999999988766552 10            222333 335778999888432      5689999999999999


Q ss_pred             CCCCCCCcceeEEEe-CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc--------------
Q 016552          180 PELVTPRRWCAAGCS-RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE--------------  244 (387)
Q Consensus       180 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~--------------  244 (387)
                      ++|+.+|..++++++ +++||++||...  .....+++++||+.+++    |..++.++.......              
T Consensus       114 ~~~~~~r~~~~~~~~~dG~v~v~GG~~~--~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (387)
T d1k3ia3         114 PDMQVARGYQSSATMSDGRVFTIGGSWS--GGVFEKNGEVYSPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNHAWL  187 (387)
T ss_dssp             CCCSSCCSSCEEEECTTSCEEEECCCCC--SSSCCCCEEEEETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred             ccccccccccceeeecCCceeeeccccc--cccccceeeeecCCCCc----eeecCCCcccccccccccceeeccceeEE
Confidence            999999988877766 689999999866  34567789999999999    998875543211000              


Q ss_pred             ---------------------------------------------ceEEEE---ECCEEEEEeeeC--------CeEEEE
Q 016552          245 ---------------------------------------------AIDAVG---WKGKLCLVNVKG--------AEGAVY  268 (387)
Q Consensus       245 ---------------------------------------------~~~~~~---~~g~lyv~gg~~--------~~i~~y  268 (387)
                                                                   ...++.   .++++|++||..        .....+
T Consensus       188 ~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~  267 (387)
T d1k3ia3         188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII  267 (387)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred             EEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecc
Confidence                                                         001111   257788888753        122222


Q ss_pred             -----ECCCCceeecccccccCCCCcEEEEe-CCeEEEEeCCC-----------CeEEEEeCCCCceeEccccccccCce
Q 016552          269 -----DVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGIDENS-----------CTLSRYDEVMDDWKEVVKSDLLKGAR  331 (387)
Q Consensus       269 -----D~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~-----------~~l~~yd~~~~~W~~v~~~~~~~~~~  331 (387)
                           +...++|..+.. ++..+..+++++. +|+||++||..           ..+.+||+++++|+++..++..|..|
T Consensus       268 ~~~~~~~~~~~~~~~~~-~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~H  346 (387)
T d1k3ia3         268 TLGEPGTSPNTVFASNG-LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH  346 (387)
T ss_dssp             ECCSTTSCCEEEECTTC-CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred             cccccccCCCceeeccc-cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccce
Confidence                 233456777765 6666666666654 78999999832           14789999999999999888777665


Q ss_pred             EEEEe--CCeEEEEecC--------CCeEEEEecc
Q 016552          332 HAAAG--GGRVCAVCEN--------GGGIVVVDVK  356 (387)
Q Consensus       332 ~~~~~--~g~i~v~gg~--------~~~i~~~d~~  356 (387)
                      .++.+  +|+|||+||+        ..++.+||+-
T Consensus       347 s~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Pp  381 (387)
T d1k3ia3         347 SISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN  381 (387)
T ss_dssp             EEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred             EEEEECCCCEEEEEeCCCcCCCCcccceEEEEcch
Confidence            55544  8999999984        1467888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.87  E-value=7.6e-22  Score=185.18  Aligned_cols=227  Identities=13%  Similarity=0.138  Sum_probs=156.6

Q ss_pred             CCCCCeecCCCCCCCCcccccccCCCccccccceEEEEECCEEEEEecccCCC----CCCCCccEEEeccCCceeeCCCC
Q 016552          107 PVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSLSGKLILLAATTHNF----NPALTRPLIFDPICRTWTFGPEL  182 (387)
Q Consensus       107 ~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~----~~~~~~~~vyd~~t~~W~~l~~~  182 (387)
                      |..++|...+++|..               +...+++..+++||++||.....    ......+++|||.|++|..++++
T Consensus         6 p~~g~W~~~~~~p~~---------------~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~   70 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIV---------------PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT   70 (387)
T ss_dssp             TTSCEEEEEEECSSC---------------CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE
T ss_pred             CCCCccCCcCCCCcc---------------ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC
Confidence            667889988777763               22234455689999999975422    12233468999999999999988


Q ss_pred             CCCCcce--eEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE-CCEEEEE
Q 016552          183 VTPRRWC--AAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW-KGKLCLV  258 (387)
Q Consensus       183 p~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~-~g~lyv~  258 (387)
                      +.+|..+  +.+ ..+++||++||.+.       +++++||+.+++    |...++|+.+|..   +.++++ ||++|++
T Consensus        71 ~~~~~~~~~~~~~~~~g~i~v~Gg~~~-------~~~~~yd~~~~~----w~~~~~~~~~r~~---~~~~~~~dG~v~v~  136 (387)
T d1k3ia3          71 VTKHDMFCPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDS----WIPGPDMQVARGY---QSSATMSDGRVFTI  136 (387)
T ss_dssp             ECSCCCSSCEEEECTTSCEEEECSSST-------TCEEEEEGGGTE----EEECCCCSSCCSS---CEEEECTTSCEEEE
T ss_pred             CCCcccceeEEEEecCCcEEEeecCCC-------cceeEecCccCc----ccccccccccccc---cceeeecCCceeee
Confidence            8777543  222 34789999998654       478999999999    9999999987754   555554 7899999


Q ss_pred             eeeC------CeEEEEECCCCceeeccccccc------------------------C-----------------------
Q 016552          259 NVKG------AEGAVYDVVANTWDDMREGMVR------------------------G-----------------------  285 (387)
Q Consensus       259 gg~~------~~i~~yD~~~~~W~~~~~~~~~------------------------~-----------------------  285 (387)
                      ||..      .+++.||+.+++|+.++.....                        +                       
T Consensus       137 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         137 GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             CCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             ccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            9854      6899999999999987531100                        0                       


Q ss_pred             ---------------CCCcEEE--EeCCeEEEEeCCC--------CeEEE-----EeCCCCceeEccccccccCceEEEE
Q 016552          286 ---------------WRGPVAA--MDEEVLYGIDENS--------CTLSR-----YDEVMDDWKEVVKSDLLKGARHAAA  335 (387)
Q Consensus       286 ---------------~~~~~~~--~~~~~ly~~~~~~--------~~l~~-----yd~~~~~W~~v~~~~~~~~~~~~~~  335 (387)
                                     ..+.++.  ..++++|++|+..        .....     ++.+.+.|..+..+|..+..+.++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~  296 (387)
T d1k3ia3         217 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV  296 (387)
T ss_dssp             EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEE
T ss_pred             eccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeee
Confidence                           0000111  1256777777621        11222     2344556777777777776666666


Q ss_pred             e-CCeEEEEecCC-----------CeEEEEeccCCCCCCceEE
Q 016552          336 G-GGRVCAVCENG-----------GGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       336 ~-~g~i~v~gg~~-----------~~i~~~d~~~~~~~~~W~~  366 (387)
                      + +|+||++||..           ..+.+||+++.    +|+.
T Consensus       297 ~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~----~W~~  335 (387)
T d1k3ia3         297 LPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD----TFYK  335 (387)
T ss_dssp             CTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT----EEEE
T ss_pred             ccCCeEEEECCcccCccCCCCcEeceEEEEECCCC----eEEE
Confidence            5 78999999831           25789999987    9996

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.1e-10  Score=67.39  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.9

Q ss_pred             CCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552           43 LPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        43 ~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f   79 (387)
                      +..||+||+.+||++||   +.+++.|||+|++++.++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            46799999999999999   89999999999999988754

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.4e-06  Score=63.95  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=37.0

Q ss_pred             CCCCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCC
Q 016552           40 QPLLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSF   79 (387)
Q Consensus        40 ~~~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f   79 (387)
                      ...+..||+||+..||++|+   +.++++|||+|+.+..++.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~l   58 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL   58 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence            46788899999999999999   99999999999999999866

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=2.2e-06  Score=62.63  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             CCCCChHHHHHHHhhhcC---chhhhhhhHhhhhhhcC-CCC
Q 016552           42 LLPGLPDHIAHLCLSHVH---PSILHNVCHSWRRLIYS-PSF   79 (387)
Q Consensus        42 ~~~~LPddl~~~iL~rLP---l~~~r~VcK~W~~li~~-~~f   79 (387)
                      .+..||+||+++||+.|+   +.+++.|||+|+.++.+ +.+
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            456799999999999999   99999999999999864 543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=0.0019  Score=57.53  Aligned_cols=190  Identities=13%  Similarity=0.144  Sum_probs=106.0

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      .++.++++|+.+       ..+.+||..++++..+..+.... ...+.+. -+++.++.||.+.        .+.+||..
T Consensus        17 ~dg~~la~~~~~-------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~--------~i~vWd~~   81 (371)
T d1k8kc_          17 KDRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLK   81 (371)
T ss_dssp             TTSSEEEEECSS-------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS--------CEEEEEEE
T ss_pred             CCCCEEEEEeCC-------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCC--------eEEEEeec
Confidence            356677676632       35889999999888766554322 2222222 2566666676544        68889999


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEEC--CCCceeecccccccCCCC--cEEEEe-C
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDV--VANTWDDMREGMVRGWRG--PVAAMD-E  295 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~--~~~~W~~~~~~~~~~~~~--~~~~~~-~  295 (387)
                      ++.    |.....+......   ...+.+  +++..+.+..+..+.+++.  ....+.....  ......  .+++.. +
T Consensus        82 ~~~----~~~~~~~~~~~~~---v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          82 GRT----WKPTLVILRINRA---ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI--KKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             TTE----EEEEEECCCCSSC---EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE--CTTCCSCEEEEEECTT
T ss_pred             ccc----ccccccccccccc---ccccccccccccceeecccCcceeeeeeccccccccccc--cccccccccccccccc
Confidence            998    8866544322111   223332  5665556555555555544  4444443221  111112  223332 5


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEccccc----------------cccCceEEE--EeCCeEEEEecCCCeEEEEeccC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKSD----------------LLKGARHAA--AGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~----------------~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +++++.++.++.+..||.............                ........+  ..+|+.++.++....+.++|..+
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            667777777889999998765433221110                011112222  33567777777778899999885


Q ss_pred             C
Q 016552          358 A  358 (387)
Q Consensus       358 ~  358 (387)
                      .
T Consensus       233 ~  233 (371)
T d1k8kc_         233 K  233 (371)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=8.5e-06  Score=61.29  Aligned_cols=39  Identities=31%  Similarity=0.483  Sum_probs=34.7

Q ss_pred             CCCCCh----HHHHHHHhhhcC---chhhhhhhHhhhhhhcCCCCC
Q 016552           42 LLPGLP----DHIAHLCLSHVH---PSILHNVCHSWRRLIYSPSFP   80 (387)
Q Consensus        42 ~~~~LP----ddl~~~iL~rLP---l~~~r~VcK~W~~li~~~~f~   80 (387)
                      ++..||    |||+..||++|+   |.++..|||+|+.++.++.+.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lW   55 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLW   55 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred             HHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            455677    699999999999   999999999999999998774

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.012  Score=50.26  Aligned_cols=174  Identities=14%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      .+.++|+...+-..  .+............++..++.|+.+.        .+.+||..+.+    -.........     
T Consensus       158 ~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg--------~i~~~d~~~~~----~~~~~~~~~~-----  218 (342)
T d2ovrb2         158 MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT--------SIRVWDVETGN----CIHTLTGHQS-----  218 (342)
T ss_dssp             CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS--------CEEEEETTTCC----EEEEECCCCS-----
T ss_pred             eEEEeecccceeeE--EEcCcccccccccCCCCEEEEEeCCC--------eEEEeecccce----eeeEeccccc-----
Confidence            45677776554322  11111222333445666677776654        67889988776    3332211111     


Q ss_pred             ceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeE-ccc
Q 016552          245 AIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKE-VVK  323 (387)
Q Consensus       245 ~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~-v~~  323 (387)
                      ...++..++.+.+.++.+..+.+||....+-...-...............++.+++.++.++.|.+||.++++-.. +..
T Consensus       219 ~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred             ceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEec
Confidence            1334445566666666667899999887654322211111111222223455677777778999999999886533 221


Q ss_pred             cc--cccCce-EEEEe-CCeEEEEecCC----CeEEEEeccC
Q 016552          324 SD--LLKGAR-HAAAG-GGRVCAVCENG----GGIVVVDVKA  357 (387)
Q Consensus       324 ~~--~~~~~~-~~~~~-~g~i~v~gg~~----~~i~~~d~~~  357 (387)
                      ..  ...... .+... ++.++..|+..    ..+.++|.+.
T Consensus       299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            11  112222 22223 44555555432    3689999873

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.53  E-value=0.0029  Score=55.50  Aligned_cols=192  Identities=12%  Similarity=0.038  Sum_probs=107.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeC-CCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFG-PELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      +|.||+..-       ....++++||.++..... .+.. ......+..-++++||+...+.    .....+..+|..+.
T Consensus        50 ~G~Ly~~D~-------~~g~I~ri~p~g~~~~~~~~~~~-~~p~gla~~~dG~l~va~~~~~----~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          50 QGQLFLLDV-------FEGNIFKINPETKEIKRPFVSHK-ANPAAIKIHKDGRLFVCYLGDF----KSTGGIFAATENGD  117 (319)
T ss_dssp             TSCEEEEET-------TTCEEEEECTTTCCEEEEEECSS-SSEEEEEECTTSCEEEEECTTS----SSCCEEEEECTTSC
T ss_pred             CCCEEEEEC-------CCCEEEEEECCCCeEEEEEeCCC-CCeeEEEECCCCCEEEEecCCC----ccceeEEEEcCCCc
Confidence            467888742       224689999998865442 2211 1111122233679999753221    12345677788777


Q ss_pred             ccccCeEEcC-CCCCCCccccceEEEEECCEEEEEeeeC------CeEEEEECCCCceeecccccccCCCCcEEEE--eC
Q 016552          225 EKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVKG------AEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DE  295 (387)
Q Consensus       225 ~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g~lyv~gg~~------~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~  295 (387)
                      .    ..... ......  +.+-..+.-+|.+|+.....      ..+..+|+.....+.+...+...   ..+++  .+
T Consensus       118 ~----~~~~~~~~~~~~--~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg  188 (319)
T d2dg1a1         118 N----LQDIIEDLSTAY--CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDE  188 (319)
T ss_dssp             S----CEEEECSSSSCC--CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTS
T ss_pred             e----eeeeccCCCccc--CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeecccc
Confidence            6    54433 222111  11122333478899865322      45788888887776654322211   23444  34


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCc---eeEcccc----ccccCceEEE-EeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDD---WKEVVKS----DLLKGARHAA-AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~---W~~v~~~----~~~~~~~~~~-~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.||+.+...++|++||.+.+.   .......    .....+-.++ --+|.|||...+++.|.+||++..
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~  259 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY  259 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc
Confidence            5799998777899999876441   1111111    1111223333 357899999878899999998754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.013  Score=50.23  Aligned_cols=183  Identities=10%  Similarity=0.076  Sum_probs=94.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.+..+       ..+..||..+.+...................++..++.|+.+.        .+.+||..+..
T Consensus       170 ~~~~~~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~i~i~d~~~~~  234 (355)
T d1nexb2         170 HGNIVVSGSYD-------NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT--------TIRIWDLENGE  234 (355)
T ss_dssp             ETTEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS--------CEEEEETTTCC
T ss_pred             ccceeeeeccc-------ceeeeeecccccceeeeeccccccccccccccceeeecccccc--------eEEeeeccccc
Confidence            44455555432       2567788877654432222222222222233455566665543        67889988776


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeCCC
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENS  305 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~  305 (387)
                          -...-.-...     ...++..++++.+.++.+..+.+||..+..-.....  ............++++++.+ .+
T Consensus       235 ----~~~~~~~h~~-----~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g-~d  302 (355)
T d1nexb2         235 ----LMYTLQGHTA-----LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSG-SE  302 (355)
T ss_dssp             ----EEEEECCCSS-----CCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEEECSSEEEEE-ET
T ss_pred             ----cccccccccc-----cccccccccceeeeeecccccccccccccceecccc--cCCceEEEEEcCCCCEEEEE-eC
Confidence                3322211111     123555677776777777789999998765322111  11111222334466665554 57


Q ss_pred             CeEEEEeCCCCceeEccccccccCce-EEEEeCCeEEEEecCCCe--EEEEecc
Q 016552          306 CTLSRYDEVMDDWKEVVKSDLLKGAR-HAAAGGGRVCAVCENGGG--IVVVDVK  356 (387)
Q Consensus       306 ~~l~~yd~~~~~W~~v~~~~~~~~~~-~~~~~~g~i~v~gg~~~~--i~~~d~~  356 (387)
                      +.|.+||.++++-.... ........ ++...++.+++.++..+.  ++++|.+
T Consensus       303 ~~i~vwd~~tg~~~~~~-~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~dfs  355 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHAN-ILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS  355 (355)
T ss_dssp             TEEEEEETTTCCBCCSC-TTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEECC
T ss_pred             CEEEEEECCCCCEEEEE-ecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEeCC
Confidence            89999999887543211 11122222 233345555555444443  6677753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.019  Score=47.60  Aligned_cols=190  Identities=14%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEE
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKW  219 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  219 (387)
                      ..++..++..++.|+.++       .+.+||..+.+-..  .+........+...++++++.||.+.        .+.++
T Consensus        18 V~c~~~d~~~l~sgs~Dg-------~i~vWd~~~~~~~~--~l~~H~~~V~~v~~~~~~l~s~s~D~--------~i~~~   80 (293)
T d1p22a2          18 VYCLQYDDQKIVSGLRDN-------TIKIWDKNTLECKR--ILTGHTGSVLCLQYDERVIITGSSDS--------TVRVW   80 (293)
T ss_dssp             EEEEECCSSEEEEEESSS-------CEEEEESSSCCEEE--EECCCSSCEEEEECCSSEEEEEETTS--------CEEEE
T ss_pred             EEEEEEcCCEEEEEeCCC-------eEEEEECCCCcEEE--EEecCCCCEeeeecccceeecccccc--------ccccc
Confidence            445667888888887543       57889988765433  22222222233445777777777654        67888


Q ss_pred             ECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCC-CCcEEEEeCCeE
Q 016552          220 DLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGW-RGPVAAMDEEVL  298 (387)
Q Consensus       220 d~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~-~~~~~~~~~~~l  298 (387)
                      |..++.    ...........     ...........+.+.....+..+|..+..-........... ...........+
T Consensus        81 ~~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  151 (293)
T d1p22a2          81 DVNTGE----MLNTLIHHCEA-----VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI  151 (293)
T ss_dssp             ESSSCC----EEEEECCCCSC-----EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEE
T ss_pred             cccccc----ccccccccccc-----cccccccccceeecccccceeEeeccccccccccccccccccccccceeccccc
Confidence            888887    54443222111     22222233333344444567778876554211111011111 111222333333


Q ss_pred             EEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          299 YGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                       +..+.++.+..||.++.+-..  ...........+..++..++.|+..+.+.+||+.+.
T Consensus       152 -~~~s~d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         152 -VSASGDRTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             -EEEETTSEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             -ccccCCCceeeecCCCCcEEE--EEcccccccccccCCCCeEEEecCCCEEEEEecccc
Confidence             333346778888887664322  111222223333444555555555556666666643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=0.02  Score=48.70  Aligned_cols=195  Identities=11%  Similarity=0.072  Sum_probs=106.4

Q ss_pred             eEEEE-ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCC--C--cceeEEEe--CCEEEEEecCCCCCCCCC
Q 016552          140 VQLVS-LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP--R--RWCAAGCS--RGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       140 ~~~~~-~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~--r--~~~~~~~~--~~~iyv~GG~~~~~~~~~  212 (387)
                      ..+++ .++.|||.-...       ..+.+||+..+--+..+....+  .  .-...+..  .+..++....       .
T Consensus        26 ~gvavd~dg~i~VaD~~n-------~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~   91 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNN-------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-------P   91 (279)
T ss_dssp             EEEEECTTCCEEEEEGGG-------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-------G
T ss_pred             cEEEEcCCCCEEEEECCC-------CEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC-------C
Confidence            34444 467899885421       4688999875422222221111  1  11122222  2344433211       1


Q ss_pred             cceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCc-EE
Q 016552          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGP-VA  291 (387)
Q Consensus       213 ~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~  291 (387)
                      ...+..++.....    +.....-... .  ....++.-+|.+|+.......+.+||+....-..+..  ......+ .+
T Consensus        92 ~~~i~~~~~~g~~----~~~~~~~~~~-~--p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~--~~~~~~~~~i  162 (279)
T d1q7fa_          92 THQIQIYNQYGQF----VRKFGATILQ-H--PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC--SKHLEFPNGV  162 (279)
T ss_dssp             GCEEEEECTTSCE----EEEECTTTCS-C--EEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--TTTCSSEEEE
T ss_pred             ccccccccccccc----eeecCCCccc-c--cceeccccCCcEEEEeeccceeeEeccCCceeecccc--ccccccccee
Confidence            1356777776655    5554321111 1  1122333467899887666788999987664443322  1111122 22


Q ss_pred             EE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEE-EeCCeEEEEecC-CCeEEEEeccC
Q 016552          292 AM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAA-AGGGRVCAVCEN-GGGIVVVDVKA  357 (387)
Q Consensus       292 ~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~-~~~g~i~v~gg~-~~~i~~~d~~~  357 (387)
                      ++ .++.+|+.+...+.|++||.+.+....+........+..++ -.+|+|||.-.. +..|.+||.+.
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G  231 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  231 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             eeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC
Confidence            33 35689999887789999999988777776433333344333 346889988543 44688888763

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.35  E-value=0.0054  Score=51.91  Aligned_cols=145  Identities=19%  Similarity=0.093  Sum_probs=77.3

Q ss_pred             EEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCC-EEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          148 KLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       148 ~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      .+||.+..+       ..+.++|+.|++....-+..  ..-...+. -++ +|||.++.+.        .+.+||..+.+
T Consensus         3 ~~yV~~~~~-------~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~--------~i~v~d~~t~~   65 (301)
T d1l0qa2           3 FAYIANSES-------DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSN--------DVSIIDTATNN   65 (301)
T ss_dssp             EEEEEETTT-------TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTE
T ss_pred             EEEEEECCC-------CEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCC--------EEEEEECCCCc
Confidence            467765422       36899999999766532222  11122222 244 6888765533        78999998887


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE--eCCeEEEEe
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGID  302 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~  302 (387)
                          -...-  +.....  ......-++. +++.+..+..+.++|..+++-...-....   .....++  .+..+++..
T Consensus        66 ----~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          66 ----VIATV--PAGSSP--QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             ----EEEEE--ECSSSE--EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEE
T ss_pred             ----eeeee--eccccc--cccccccccccccccccccceeeecccccceeeeeccccc---cceEEEeecCCCeeeeee
Confidence                32221  111111  0112223444 45444444678888988876443221111   1112222  244555555


Q ss_pred             CCCCeEEEEeCCCCceeE
Q 016552          303 ENSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~  320 (387)
                      ..+..+..+|..+.....
T Consensus       135 ~~~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVIN  152 (301)
T ss_dssp             TTTTEEEEEETTTTEEEE
T ss_pred             ccccceeeeeccccceee
Confidence            556778889988876544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=0.019  Score=48.18  Aligned_cols=185  Identities=14%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceee--CCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTF--GPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~--l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +|.+|+.....      ...+..+++.+..=..  ......|.  ..+...+++|||......        .+.+++..+
T Consensus        24 dG~i~v~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~p~--gvav~~~g~i~v~d~~~~--------~i~~~~~~~   87 (260)
T d1rwia_          24 AGNVYVTSEGM------YGRVVKLATGSTGTTVLPFNGLYQPQ--GLAVDGAGTVYVTDFNNR--------VVTLAAGSN   87 (260)
T ss_dssp             TCCEEEEECSS------SCEEEEEC----CEEECCCCSCCSCC--CEEECTTCCEEEEETTTE--------EEEECTTCS
T ss_pred             CCCEEEEEcCC------CCEEEEEcCCCceEEEeccCCccCce--EEEEcCCCCEEEeeeeec--------eeeeeeecc
Confidence            57789876422      1345666666553222  22222222  222334678998854321        344444444


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecc-cccccCCCCcEEEE-eCCeEEEE
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMR-EGMVRGWRGPVAAM-DEEVLYGI  301 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~-~~~~~~~~~~~~~~-~~~~ly~~  301 (387)
                      ..    +....  .....+  ...++-.+|.+|+.......+..+++....-.... ..+..   ...+++ .++.+|+.
T Consensus        88 ~~----~~~~~--~~~~~p--~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~i~~~~~g~~~v~  156 (260)
T d1rwia_          88 NQ----TVLPF--DGLNYP--EGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND---PDGVAVDNSGNVYVT  156 (260)
T ss_dssp             CC----EECCC--CSCCSE--EEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCS---CCEEEECTTCCEEEE
T ss_pred             ce----eeeee--eeeeec--ccccccccceeEeeccccccccccccccceeeeeeecccCC---cceeeecCCCCEeee
Confidence            44    43211  111111  11122246789988755577888888765433322 21111   123333 36689998


Q ss_pred             eCCCCeEEEEeCCCCceeEccccccccCceEEEE-eCCeEEEEecCCCeEEEEeccCC
Q 016552          302 DENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA-GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       302 ~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~-~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +...+.+..||+++.....+... ....+..++. -+|+||+.-..+..+..++.++.
T Consensus       157 ~~~~~~i~~~d~~~~~~~~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         157 DTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccccccccccccccceeeeeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            87678899999988765544321 2233344443 46889998777888999988754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.31  E-value=0.019  Score=49.60  Aligned_cols=187  Identities=10%  Similarity=-0.022  Sum_probs=94.9

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEe--CC-EEEEEecCCCCCCCCCcceEEEEECC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCS--RG-AVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      ++..++.+|..     ....+.++|..+.+-..  .+.........+.+  ++ .+++.|+.+.        .+.+||..
T Consensus       113 d~~~l~~~~~~-----~~~~~~v~~~~~~~~~~--~l~~h~~~v~~v~~~~~~~~~l~sgs~d~--------~i~i~d~~  177 (311)
T d1nr0a1         113 ESKRIAAVGEG-----RERFGHVFLFDTGTSNG--NLTGQARAMNSVDFKPSRPFRIISGSDDN--------TVAIFEGP  177 (311)
T ss_dssp             TSCEEEEEECC-----SSCSEEEEETTTCCBCB--CCCCCSSCEEEEEECSSSSCEEEEEETTS--------CEEEEETT
T ss_pred             ccccccccccc-----ccccccccccccccccc--cccccccccccccccccceeeeccccccc--------cccccccc
Confidence            35555555522     12345677777654322  22211111112222  33 3566666544        67889988


Q ss_pred             CCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceee-cccc--cccCCCC--cEEEEe-
Q 016552          223 NGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDD-MREG--MVRGWRG--PVAAMD-  294 (387)
Q Consensus       223 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~-~~~~--~~~~~~~--~~~~~~-  294 (387)
                      +.+    -...-.-...     ...++..  ++.+++.++.+..+.+||..+++-.. ....  ...+...  .++++. 
T Consensus       178 ~~~----~~~~~~~~~~-----~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         178 PFK----FKSTFGEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             TBE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             ccc----cccccccccc-----cccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            766    3322211111     1223333  66776777766789999988764322 1110  1111111  233332 


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceeE-ccccccccCceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDDWKE-VVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      +++.++.++.++.|.+||.++++-.. +............+...+..++.++..+.|.++|++
T Consensus       249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            45666667678899999998875332 211111122222334444445555667789999874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.31  E-value=0.025  Score=48.65  Aligned_cols=196  Identities=15%  Similarity=0.073  Sum_probs=111.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.||.+--.       -..++++|+.+++-+.. .+|. .....+..-++.+++...          +.+..||+.+++
T Consensus        29 ~~~l~wvDi~-------~~~I~r~d~~~g~~~~~-~~~~-~~~~i~~~~dg~l~va~~----------~gl~~~d~~tg~   89 (295)
T d2ghsa1          29 SGTAWWFNIL-------ERELHELHLASGRKTVH-ALPF-MGSALAKISDSKQLIASD----------DGLFLRDTATGV   89 (295)
T ss_dssp             TTEEEEEEGG-------GTEEEEEETTTTEEEEE-ECSS-CEEEEEEEETTEEEEEET----------TEEEEEETTTCC
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCeEEEE-ECCC-CcEEEEEecCCCEEEEEe----------CccEEeecccce
Confidence            5678876432       24689999999865542 2222 112233345778887632          257889999999


Q ss_pred             cccCeEEcCCCCCCCc-cccceEEEEECCEEEEEeeeC----CeEEEEECCCCceeecccccccCCCCcEEEE--eCCeE
Q 016552          226 KNSRWEKTGELKDGRF-SREAIDAVGWKGKLCLVNVKG----AEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVL  298 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~-~~~~~~~~~~~g~lyv~gg~~----~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~~~l  298 (387)
                          ++.+...+.... .+.+-..+--+|.+|+.....    .....|....++-+.+...+..   ....+.  .++.+
T Consensus        90 ----~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~---~Ng~~~s~d~~~l  162 (295)
T d2ghsa1          90 ----LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI---PNSICFSPDGTTG  162 (295)
T ss_dssp             ----EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS---EEEEEECTTSCEE
T ss_pred             ----eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC---cceeeecCCCceE
Confidence                888765433221 111122333478888765432    3445566556665555432211   122332  35568


Q ss_pred             EEEeCCCCeEEEEeCCCC--ce----eEcccccccc-CceEEE-EeCCeEEEEecCCCeEEEEeccCCCCCCceEE-eCC
Q 016552          299 YGIDENSCTLSRYDEVMD--DW----KEVVKSDLLK-GARHAA-AGGGRVCAVCENGGGIVVVDVKAAAAPTIFVV-DTP  369 (387)
Q Consensus       299 y~~~~~~~~l~~yd~~~~--~W----~~v~~~~~~~-~~~~~~-~~~g~i~v~gg~~~~i~~~d~~~~~~~~~W~~-~~p  369 (387)
                      |+.+...+.|++|+.+.+  ..    ......+... ..-.++ -.+|.|++..-.++.|..||++.+    .... .+|
T Consensus       163 ~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~----~~~~i~lP  238 (295)
T d2ghsa1         163 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN----HIARYEVP  238 (295)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC----EEEEEECS
T ss_pred             EEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc----EeeEecCC
Confidence            999877889999886432  11    1111111111 122233 356889998767788999999865    5554 666


Q ss_pred             CC
Q 016552          370 LG  371 (387)
Q Consensus       370 ~~  371 (387)
                      ..
T Consensus       239 ~~  240 (295)
T d2ghsa1         239 GK  240 (295)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.28  E-value=0.014  Score=49.15  Aligned_cols=213  Identities=15%  Similarity=0.088  Sum_probs=105.1

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEE-CC-EEEEEecccCCCCCCCCccEEEeccCCceee
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSL-SG-KLILLAATTHNFNPALTRPLIFDPICRTWTF  178 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~  178 (387)
                      .+.++|+++++...--+....|                 +.++.. +| .||+.+...       ..+.+||..+++-..
T Consensus        13 ~v~v~D~~t~~~~~~i~~g~~p-----------------~~va~spdG~~l~v~~~~~-------~~i~v~d~~t~~~~~   68 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVGSNP-----------------MGAVISPDGTKVYVANAHS-------NDVSIIDTATNNVIA   68 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSSE-----------------EEEEECTTSSEEEEEEGGG-------TEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCeEEEEEECCCCc-----------------eEEEEeCCCCEEEEEECCC-------CEEEEEECCCCceee
Confidence            5778899887654322222211                 333332 33 477765532       368999998876443


Q ss_pred             CCCCCCCCcceeEEE-eCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEE
Q 016552          179 GPELVTPRRWCAAGC-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLC  256 (387)
Q Consensus       179 l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~ly  256 (387)
                      .  ++........+. .++ .+++.+..+        ..+.++|..+++    -...-......    ......-+|...
T Consensus        69 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~dg~~~  130 (301)
T d1l0qa2          69 T--VPAGSSPQGVAVSPDGKQVYVTNMAS--------STLSVIDTTSNT----VAGTVKTGKSP----LGLALSPDGKKL  130 (301)
T ss_dssp             E--EECSSSEEEEEECTTSSEEEEEETTT--------TEEEEEETTTTE----EEEEEECSSSE----EEEEECTTSSEE
T ss_pred             e--eecccccccccccccccccccccccc--------ceeeecccccce----eeeeccccccc----eEEEeecCCCee
Confidence            2  222111122222 233 455554332        256778888776    44332221110    022222355544


Q ss_pred             -EEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEE
Q 016552          257 -LVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHA  333 (387)
Q Consensus       257 -v~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~  333 (387)
                       +.+..+..+..+|..+........... .  ...++.  .++.+|+.....+.+..++.....................
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (301)
T d1l0qa2         131 YVTNNGDKTVSVINTVTKAVINTVSVGR-S--PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV  207 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCS-S--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE
T ss_pred             eeeeccccceeeeeccccceeeecccCC-C--ceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeec
Confidence             444344678888888776543322111 1  112222  2446777665566778888877765554332221112212


Q ss_pred             EEeCCeEEEEecC--CCeEEEEeccCC
Q 016552          334 AAGGGRVCAVCEN--GGGIVVVDVKAA  358 (387)
Q Consensus       334 ~~~~g~i~v~gg~--~~~i~~~d~~~~  358 (387)
                      ..-+..+++.+.+  .+.+.++|..+.
T Consensus       208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         208 NPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             cccccccccccccceeeeeeeeecCCC
Confidence            2224455555433  356888888754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.014  Score=50.76  Aligned_cols=185  Identities=10%  Similarity=0.028  Sum_probs=99.0

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcce-eEE-EeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWC-AAG-CSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      ++..++.|+.+       ..+.+||....+.+....+....... ..+ .-++.+++.++.+.        .+.+||..+
T Consensus       108 dg~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG--------NIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEeecc-------ccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccc
Confidence            55666666643       25788998777655544433222211 122 22456666665433        678888887


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEe-CCeEEEEe
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMD-EEVLYGID  302 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~  302 (387)
                      .+    -...........   ...+...++...+.++....+.+||..+++=...-. ...  ...+++.. ++.+++.+
T Consensus       173 ~~----~~~~~~~~~~~v---~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~--~i~~l~~~~~~~~l~~~  242 (337)
T d1gxra_         173 QT----LVRQFQGHTDGA---SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS--QIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             TE----EEEEECCCSSCE---EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS--CEEEEEECTTSSEEEEE
T ss_pred             cc----cccccccccccc---ccccccccccccccccccccccccccccceeecccc-ccc--ceEEEEEccccccccee
Confidence            76    332221111111   011222356666677766789999998764211111 111  11223332 45666667


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCceE--EEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGARH--AAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~--~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..++.+..||..+..-.....   ......  ....+|+.++.|+..+.+.+||..+.
T Consensus       243 ~~d~~i~i~d~~~~~~~~~~~---~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         243 MESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             ETTSCEEEEETTSSCEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccccccccccccccccccccc---cccccceEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            678899999998765433221   111222  22346777777777788999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.25  E-value=0.019  Score=49.86  Aligned_cols=228  Identities=9%  Similarity=0.020  Sum_probs=113.7

Q ss_pred             EEEEEeCCCCCeecCCCCCCCCcccccccCCCccccccceEEEEE--CCEEEEEecccCCCCCCCCccEEEeccCCceee
Q 016552          101 HLFTFDPVSSTWDPLPRPPPDPPLHLILHHPSFLSRNLPVQLVSL--SGKLILLAATTHNFNPALTRPLIFDPICRTWTF  178 (387)
Q Consensus       101 ~~~~~d~~~~~W~~l~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~  178 (387)
                      +++.+|+.++.+..+.......            .......++..  ++.+|+..+.        ..+.++|+.++....
T Consensus        47 ~I~r~d~~~~~~~~~~~~~~~~------------~~g~P~Gl~~~~dg~~l~vad~~--------~~i~~~~~~g~~~~~  106 (314)
T d1pjxa_          47 EILRIDLKTGKKTVICKPEVNG------------YGGIPAGCQCDRDANQLFVADMR--------LGLLVVQTDGTFEEI  106 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEETT------------EECCEEEEEECSSSSEEEEEETT--------TEEEEEETTSCEEEC
T ss_pred             EEEEEECCCCcEEEEECCcccc------------CCCcceeEEEeCCCCEEEEEECC--------CeEEEEeCCCcEEEE
Confidence            5788898887765443221100            00111233332  3456665432        347889998876554


Q ss_pred             CCCCCCCCc----ceeEEEeCCEEEEEecCCC--CC-----CCCCcceEEEEECCCCccccCeEEcC-CCCCCCccccce
Q 016552          179 GPELVTPRR----WCAAGCSRGAVYVASGIGS--QF-----SSDVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAI  246 (387)
Q Consensus       179 l~~~p~~r~----~~~~~~~~~~iyv~GG~~~--~~-----~~~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~  246 (387)
                      +......+.    .-.+..-+|.||+..-...  ..     .......+..+++.. +    ...+. .+..+     +-
T Consensus       107 ~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~----~~~~~~~~~~p-----NG  176 (314)
T d1pjxa_         107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q----MIQVDTAFQFP-----NG  176 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C----EEEEEEEESSE-----EE
T ss_pred             EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c----eeEeeCCccee-----ee
Confidence            433222221    1123334679998732211  00     011233566777643 3    44432 22211     11


Q ss_pred             EEEEECC-----EEEEEeeeCCeEEEEECCCC---ceeecccccccCC-CC-cEEEE-eCCeEEEEeCCCCeEEEEeCCC
Q 016552          247 DAVGWKG-----KLCLVNVKGAEGAVYDVVAN---TWDDMREGMVRGW-RG-PVAAM-DEEVLYGIDENSCTLSRYDEVM  315 (387)
Q Consensus       247 ~~~~~~g-----~lyv~gg~~~~i~~yD~~~~---~W~~~~~~~~~~~-~~-~~~~~-~~~~ly~~~~~~~~l~~yd~~~  315 (387)
                      .+..-++     .||+.......+++||...+   .+.++-...+... .. ..+++ .+|.||+.....+.|++||+++
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            1222232     58887665678999986544   2222211011111 11 13443 4678999876678999999998


Q ss_pred             CceeEccccccccCceEEEEeCC-eEEEEecCCCeEEEEeccCC
Q 016552          316 DDWKEVVKSDLLKGARHAAAGGG-RVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       316 ~~W~~v~~~~~~~~~~~~~~~~g-~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..-...-..|.......+..-++ .|||....++.|+.+|....
T Consensus       257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            75433222222221222222233 48888777788888887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.16  E-value=0.021  Score=49.17  Aligned_cols=181  Identities=11%  Similarity=-0.008  Sum_probs=93.5

Q ss_pred             EEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCC----CcceeEEEeCCEEEEEecCCCCCCCCCcceEEE
Q 016552          143 VSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTP----RRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEK  218 (387)
Q Consensus       143 ~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  218 (387)
                      ...++.+++...         +.++.||+.+++.+.+......    |.....+--+|+||+......    .....-..
T Consensus        66 ~~~dg~l~va~~---------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~----~~~~~g~l  132 (295)
T d2ghsa1          66 KISDSKQLIASD---------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK----AETGAGSI  132 (295)
T ss_dssp             EEETTEEEEEET---------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT----CCTTCEEE
T ss_pred             EecCCCEEEEEe---------CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc----ccccceeE
Confidence            345677776532         2589999999999887654432    223333334678887643322    11223345


Q ss_pred             EECCCCccccCeEEcC-CCCCCCccccceEEEEECC-EEEEEeeeCCeEEEEECCCC--ceeeccc---ccccCCC-CcE
Q 016552          219 WDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKG-KLCLVNVKGAEGAVYDVVAN--TWDDMRE---GMVRGWR-GPV  290 (387)
Q Consensus       219 yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g-~lyv~gg~~~~i~~yD~~~~--~W~~~~~---~~~~~~~-~~~  290 (387)
                      |....++    -..+. .+..+     +..+...++ .+|+.......+++||...+  .......   ..+.... -.+
T Consensus       133 ~~~~~g~----~~~~~~~~~~~-----Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG  203 (295)
T d2ghsa1         133 YHVAKGK----VTKLFADISIP-----NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  203 (295)
T ss_dssp             EEEETTE----EEEEEEEESSE-----EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             eeecCCc----EEEEeeccCCc-----ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence            5555565    44443 11111     111222233 57777665678999876532  2211100   0010111 123


Q ss_pred             EEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeC-CeEEEEec
Q 016552          291 AAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGG-GRVCAVCE  345 (387)
Q Consensus       291 ~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~-g~i~v~gg  345 (387)
                      +++ .+|.||+-.-..+.|.+||++.....++..+......++...-+ +.|||...
T Consensus       204 ~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             eEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            343 46689987655778999999988777765432211111111122 45888754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.16  E-value=0.011  Score=51.06  Aligned_cols=143  Identities=13%  Similarity=0.069  Sum_probs=79.1

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeC--CeEEEEEC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKG--AEGAVYDV  270 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~--~~i~~yD~  270 (387)
                      ++++.+.|+.+.        .+.+||..+..    ......++....   ...++.  -++++++.++.+  ..+.++|.
T Consensus        69 ~g~~latg~~dg--------~i~iwd~~~~~----~~~~~~~~~~~~---~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          69 SGYYCASGDVHG--------NVRIWDTTQTT----HILKTTIPVFSG---PVKDISWDSESKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             TSSEEEEEETTS--------EEEEEESSSTT----CCEEEEEECSSS---CEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             CCCeEeccccCc--------eEeeeeeeccc----cccccccccccC---cccccccccccccccccccccccccccccc
Confidence            677778887755        78999998877    432211111100   022222  256666666544  44778887


Q ss_pred             CCCceeecccccccCCC--CcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe--CCeEEEEe
Q 016552          271 VANTWDDMREGMVRGWR--GPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG--GGRVCAVC  344 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~--~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~--~g~i~v~g  344 (387)
                      ++.+-...    ..+..  ..+++..  ++.+++.++.++.|..||.++.+-..  ...........+..  ++++++.|
T Consensus       134 ~~~~~~~~----l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~--~~~~~~~~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         134 DTGTSNGN----LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             TTCCBCBC----CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccc----ccccccccccccccccceeeeccccccccccccccccccccc--ccccccccccccccCccccccccc
Confidence            76643211    11111  1233332  33356666677889999998754322  22222223223333  67788887


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      +..+.+.+||....
T Consensus       208 ~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         208 GGDGTIVLYNGVDG  221 (311)
T ss_dssp             ETTSCEEEEETTTC
T ss_pred             cccccccccccccc
Confidence            77788999998754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.015  Score=50.55  Aligned_cols=168  Identities=13%  Similarity=0.108  Sum_probs=89.7

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      .+.++|..+++-..................++..++.|+.+.        .+.+||..+.+    =...-.....     
T Consensus       164 ~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~--------~v~i~d~~~~~----~~~~~~~~~~-----  226 (337)
T d1gxra_         164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN--------TVRSWDLREGR----QLQQHDFTSQ-----  226 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE----EEEEEECSSC-----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc--------cccccccccce----eecccccccc-----
Confidence            578888877654332111111111112223556666666543        67889988776    2222112211     


Q ss_pred             ceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEc
Q 016552          245 AIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEV  321 (387)
Q Consensus       245 ~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v  321 (387)
                       ..++.+  ++.+.+.++.+..+.+||..+..-.....  ... ...+++. .++++++.++.++.|.+||.++++  .+
T Consensus       227 -i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--~~  300 (337)
T d1gxra_         227 -IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SI  300 (337)
T ss_dssp             -EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EE
T ss_pred             -eEEEEEcccccccceeccccccccccccccccccccc--ccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCC--EE
Confidence             222222  56666666666789999998775432211  011 1122333 355666667678899999987653  33


Q ss_pred             cccccccCc-eEEEEeCCeEEEEecCCCeEEEEec
Q 016552          322 VKSDLLKGA-RHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       322 ~~~~~~~~~-~~~~~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      ........- ......+++.++.|+..+.|.+||+
T Consensus       301 ~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         301 FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            222221111 2223346788788777788999886

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.024  Score=47.61  Aligned_cols=144  Identities=15%  Similarity=0.040  Sum_probs=85.5

Q ss_pred             eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC--CCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECC
Q 016552          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      .+++||+..-.        ...+..++.....    -....  .+..+.     ..++.-+|.+|+.......+..||++
T Consensus       107 ~~g~i~v~d~~--------~~~~~~~~~~~~~----~~~~~~~~~~~p~-----~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_         107 TQGAVYVADRG--------NNRVVKLAAGSKT----QTVLPFTGLNDPD-----GVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             TTCCEEEEEGG--------GTEEEEECTTCSS----CEECCCCSCCSCC-----EEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             ccceeEeeccc--------cccccccccccce----eeeeeecccCCcc-----eeeecCCCCEeeeccccccccccccc
Confidence            35689887422        1256667776655    22222  222111     22233467898887666789999998


Q ss_pred             CCceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEe-CCeEEEEecCCCe
Q 016552          272 ANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAG-GGRVCAVCENGGG  349 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~-~g~i~v~gg~~~~  349 (387)
                      ......... .... ....+++ .+|.||+.+...+.+..|++.+.....+.... ...+..++.- +|.|||.-.+++.
T Consensus       170 ~~~~~~~~~-~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~-~~~P~~i~~d~~g~l~vad~~~~r  246 (260)
T d1rwia_         170 SNNQVVLPF-TDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGNDR  246 (260)
T ss_dssp             TCCEEECCC-SSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS-CCCEEEEEECTTCCEEEEEGGGTE
T ss_pred             cceeeeeec-cccC-CCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC-CCCeEEEEEeCCCCEEEEECCCCE
Confidence            775544432 1111 1123444 35789999877889999999887665543322 2233444433 5789888666788


Q ss_pred             EEEEeccC
Q 016552          350 IVVVDVKA  357 (387)
Q Consensus       350 i~~~d~~~  357 (387)
                      |..++...
T Consensus       247 I~~i~~~~  254 (260)
T d1rwia_         247 VVKLTSLE  254 (260)
T ss_dssp             EEEECCCG
T ss_pred             EEEEeCCC
Confidence            88887663

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.04  E-value=0.034  Score=47.11  Aligned_cols=179  Identities=9%  Similarity=-0.039  Sum_probs=98.1

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSR  243 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~  243 (387)
                      ..+.++|+....+..............++..++.+|++....        ..+.+||+....    -...........  
T Consensus        93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~--------~~~~~~~~~g~~----~~~~g~~~~~~~--  158 (279)
T d1q7fa_          93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--------MRVIIFDQNGNV----LHKFGCSKHLEF--  158 (279)
T ss_dssp             CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--------TEEEEECTTSCE----EEEEECTTTCSS--
T ss_pred             cccccccccccceeecCCCcccccceeccccCCcEEEEeecc--------ceeeEeccCCce----eecccccccccc--
Confidence            356778887766665432221111222223357888875432        266778876554    333321111111  


Q ss_pred             cceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE-eCCeEEEEeCC-CCeEEEEeCCCCceeEc
Q 016552          244 EAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM-DEEVLYGIDEN-SCTLSRYDEVMDDWKEV  321 (387)
Q Consensus       244 ~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~-~~~l~~yd~~~~~W~~v  321 (387)
                      ....++--+|.+|+.......+.+||+..+...++... ........+++ .+|.||+.+.. ...|.+||++...=..+
T Consensus       159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~  237 (279)
T d1q7fa_         159 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL  237 (279)
T ss_dssp             EEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             cceeeeccceeEEeeeccccceeeeecCCceeeeeccc-ccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEE
Confidence            11122333578999887778999999987765555421 11111123444 35689998754 34699999876522222


Q ss_pred             cccccccCceEE-EEeCCeEEEEecCCCeEEEEeccCC
Q 016552          322 VKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       322 ~~~~~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ........+..+ +.-+|+|||.. .+..|.+|+..+-
T Consensus       238 ~~~~~~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~~~  274 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQL  274 (279)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEECSCC
T ss_pred             eCCCCCCCEeEEEEeCCCcEEEEe-CCCeEEEEEeeee
Confidence            222122223333 44578888764 5788999988754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.016  Score=50.89  Aligned_cols=178  Identities=10%  Similarity=0.041  Sum_probs=85.8

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC--cc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR--FS  242 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~--~~  242 (387)
                      .+.++|..+..-..................++++++.|+.+.        .+.+||..+..    ....-..+...  ..
T Consensus       186 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--------~i~i~~~~~~~----~~~~~~~~~~~~~~h  253 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR--------AVRVWDSETGF----LVERLDSENESGTGH  253 (388)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTS--------CEEEEETTTCC----EEEEEC------CCC
T ss_pred             eeeeeeccccccccccccccccccccccCCCCCeEEEEcCCC--------eEEEeecccCc----cceeeccccccccCC
Confidence            456677666544332221111111111122556777776544        67888988777    43322111110  00


Q ss_pred             ccceEEEEE--CCEEEEEeeeCCeEEEEECCCCceeecccccc--------cCCCC--cEEEE-eCCeEEEEeCCCCeEE
Q 016552          243 REAIDAVGW--KGKLCLVNVKGAEGAVYDVVANTWDDMREGMV--------RGWRG--PVAAM-DEEVLYGIDENSCTLS  309 (387)
Q Consensus       243 ~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~--------~~~~~--~~~~~-~~~~ly~~~~~~~~l~  309 (387)
                      .....++.+  ++++.+.++.+..+.+||..+..-........        .....  .+++. .++++++.++.++.|.
T Consensus       254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            111222222  56666666666789999987654322111000        00011  12222 2456666676788999


Q ss_pred             EEeCCCCceeEccccccccCceEEEE--------eCCeEEEEecCCCeEEEEecc
Q 016552          310 RYDEVMDDWKEVVKSDLLKGARHAAA--------GGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       310 ~yd~~~~~W~~v~~~~~~~~~~~~~~--------~~g~i~v~gg~~~~i~~~d~~  356 (387)
                      +||.++.+-  +..+.........+.        .++.+++.|+..+.|.+||++
T Consensus       334 vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         334 FWDKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCcE--EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999987643  222322222222221        257788888888889999886

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.012  Score=51.80  Aligned_cols=189  Identities=14%  Similarity=0.085  Sum_probs=95.2

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      ++.+++.|+.++       .+.++|..+.+......-............++...+.|+.+.        .+.++|..+..
T Consensus       132 ~~~~l~s~~~dg-------~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~  196 (388)
T d1erja_         132 DGKFLATGAEDR-------LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR--------TVRIWDLRTGQ  196 (388)
T ss_dssp             TSSEEEEEETTS-------CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------EEEEEETTTTE
T ss_pred             CCCcceeccccc-------ccccccccccccccccccccccccccccccccccccccccce--------eeeeeeccccc
Confidence            456666676432       578889888766543221111111111122344455554333        67888888776


Q ss_pred             cccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeeccccc---ccCCCCc--EEEEe-CCe
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGM---VRGWRGP--VAAMD-EEV  297 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~---~~~~~~~--~~~~~-~~~  297 (387)
                          -..........     ...+.  .++.+.+.++.+..+.+||..+......-...   ..+....  +++.. ++.
T Consensus       197 ----~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  267 (388)
T d1erja_         197 ----CSLTLSIEDGV-----TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ  267 (388)
T ss_dssp             ----EEEEEECSSCE-----EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             ----ccccccccccc-----ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC
Confidence                33332221111     11222  25666666776678999999887653221101   1111111  23332 556


Q ss_pred             EEEEeCCCCeEEEEeCCCCceeEccccc----------cccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          298 LYGIDENSCTLSRYDEVMDDWKEVVKSD----------LLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~W~~v~~~~----------~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +++.++.++.+..||..+..-......+          ........+  ..+++.++.|+..+.|.+||+.+.
T Consensus       268 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            6666667889999998765433221111          111122222  235778888777888999999865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.11  Score=44.45  Aligned_cols=102  Identities=9%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             CEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCc--EEEEeCCeEEEEeCCCCeEEEEeCCCCceeEccccc-c--
Q 016552          253 GKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGP--VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-L--  326 (387)
Q Consensus       253 g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~--~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-~--  326 (387)
                      +.+++.++.+..+.+||..+++-. .+.. ......+.  +....+++.++.++.++.|.+||.++++-...-... .  
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  296 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  296 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             ceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc
Confidence            567777777778999999887643 3322 11111122  233356677777777889999999987543322111 1  


Q ss_pred             ccCceEEEEeCCeEEEEecCCCeEEEEec
Q 016552          327 LKGARHAAAGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       327 ~~~~~~~~~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      .....++...++..++.|+..+.|.+||+
T Consensus       297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            11122333344445566677788999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.80  E-value=0.011  Score=50.08  Aligned_cols=145  Identities=9%  Similarity=0.027  Sum_probs=82.9

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++++.|+.+.        .+.+||..+.+    ...+.......    ...++.  .+++..+.++.+..+..||..+
T Consensus       147 ~~~~l~~g~~dg--------~i~~~d~~~~~----~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         147 DKQFVAVGGQDS--------KVHVYKLSGAS----VSEVKTIVHPA----EITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             TSCEEEEEETTS--------EEEEEEEETTE----EEEEEEEECSS----CEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccc--------ccccccccccc----ccccccccccc----cccccccccccccccccccccccccccccc
Confidence            456666666543        77889988776    55443221111    122222  2566666666667899999987


Q ss_pred             CceeecccccccCCCC--cEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccc-cccCc-eEEEEeCCeEEEEecCC
Q 016552          273 NTWDDMREGMVRGWRG--PVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-LLKGA-RHAAAGGGRVCAVCENG  347 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~--~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-~~~~~-~~~~~~~g~i~v~gg~~  347 (387)
                      +.......... +...  .+++. .++.+++.++.++.|.+||.++.....+.... ..... ..++..+++.++.|+..
T Consensus       211 ~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         211 NFELAHTNSWT-FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             TTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred             ccccccccccc-ccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence            76543322111 1111  23333 36677777777889999999877554433221 12222 23344566677777777


Q ss_pred             CeEEEEecc
Q 016552          348 GGIVVVDVK  356 (387)
Q Consensus       348 ~~i~~~d~~  356 (387)
                      ..|-+||+.
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            788888873

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.77  E-value=0.071  Score=46.04  Aligned_cols=196  Identities=13%  Similarity=-0.011  Sum_probs=102.6

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC--CCCCCcceeEEEe---CCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE--LVTPRRWCAAGCS---RGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~--~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      +|.||+..........+...++++|+.++.+.....  ....-.......+   ++.+|+..+.         +.+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~---------~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---------LGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---------TEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC---------CeEEEEe
Confidence            577888754221112223568999999998766432  1111111222222   3467876432         2467888


Q ss_pred             CCCCccccCeEEcCCCCCCC-ccccceEEEEECCEEEEEeeeC---------------CeEEEEECCCCceeeccccccc
Q 016552          221 LMNGEKNSRWEKTGELKDGR-FSREAIDAVGWKGKLCLVNVKG---------------AEGAVYDVVANTWDDMREGMVR  284 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~-~~~~~~~~~~~~g~lyv~gg~~---------------~~i~~yD~~~~~W~~~~~~~~~  284 (387)
                      +....    ...+....... ....+-..+--+|.||+.....               ..++.+++.. +...+...+..
T Consensus        99 ~~g~~----~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~  173 (314)
T d1pjxa_          99 TDGTF----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQF  173 (314)
T ss_dssp             TTSCE----EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESS
T ss_pred             CCCcE----EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcce
Confidence            87765    44333222221 1111122334468999864221               3566777643 44444321111


Q ss_pred             CCCCcEEEE--eCC----eEEEEeCCCCeEEEEeCCCCc---eeEc-cccccc--cCceE-EEEeCCeEEEEecCCCeEE
Q 016552          285 GWRGPVAAM--DEE----VLYGIDENSCTLSRYDEVMDD---WKEV-VKSDLL--KGARH-AAAGGGRVCAVCENGGGIV  351 (387)
Q Consensus       285 ~~~~~~~~~--~~~----~ly~~~~~~~~l~~yd~~~~~---W~~v-~~~~~~--~~~~~-~~~~~g~i~v~gg~~~~i~  351 (387)
                      .   ..+++  .++    .||+.+...++|++||...+.   +.++ ...+..  ..+-. ++-.+|+|||...+++.|.
T Consensus       174 p---NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         174 P---NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             E---EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             e---eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            1   12332  222    589888778899999865442   2222 122211  11222 2335789999877788999


Q ss_pred             EEeccCC
Q 016552          352 VVDVKAA  358 (387)
Q Consensus       352 ~~d~~~~  358 (387)
                      +||++++
T Consensus       251 ~~dp~~g  257 (314)
T d1pjxa_         251 VFGPDGG  257 (314)
T ss_dssp             EECTTCB
T ss_pred             EEeCCCC
Confidence            9999855

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.13  Score=43.57  Aligned_cols=104  Identities=12%  Similarity=-0.058  Sum_probs=59.8

Q ss_pred             ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccC
Q 016552          251 WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG  329 (387)
Q Consensus       251 ~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~  329 (387)
                      .++.+.+.+..+..+..||..+.+-........  ....... ..++..++.+..++.+..||.++..-..  .+.....
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~h~~  244 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY--TLQGHTA  244 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE--EECCCSS
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccc--cccccccccccceeeecccccceEEeeecccccccc--ccccccc
Confidence            345555555555678889988775433222111  1111222 2344556666667889999988764332  2222233


Q ss_pred             ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          330 ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       330 ~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...++..+++.++.|+..+.|.+||..+.
T Consensus       245 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         245 LVGLLRLSDKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             CCCEEEECSSEEEEECTTSEEEEEETTTC
T ss_pred             cccccccccceeeeeeccccccccccccc
Confidence            34455666777777777777888887743

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.67  E-value=0.043  Score=46.67  Aligned_cols=140  Identities=12%  Similarity=0.073  Sum_probs=76.7

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCCC
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      +.+++.|+.+.        .+.+||..+.+    -...-.....     ...++.+  ++.+++.++.+..+..||....
T Consensus       196 ~~~~~~~~~d~--------~v~i~d~~~~~----~~~~~~~h~~-----~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         196 TRLFVSGACDA--------SAKLWDVREGM----CRQTFTGHES-----DINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             SSEEEEEETTT--------EEEEEETTTTE----EEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cceeEEeecCc--------eEEEEECCCCc----EEEEEeCCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            44555555433        67888988776    2221111111     1222322  5667677766678999998876


Q ss_pred             ceeecccccccCCCCcEEEEe-CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeE
Q 016552          274 TWDDMREGMVRGWRGPVAAMD-EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGI  350 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~~~~~~-~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i  350 (387)
                      .....-..........+++.. ++.+++.++.++.|.+||..+.+  .+..+.........+.  .+++.++.|+..+.|
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence            543322111111111233332 55666777778899999987653  3444333333333333  357777777777778


Q ss_pred             EEEe
Q 016552          351 VVVD  354 (387)
Q Consensus       351 ~~~d  354 (387)
                      .+||
T Consensus       337 ~iWd  340 (340)
T d1tbga_         337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8876

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.62  E-value=0.069  Score=45.65  Aligned_cols=194  Identities=12%  Similarity=-0.018  Sum_probs=103.4

Q ss_pred             EECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          144 SLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       144 ~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      .-+|.||+....       ...++++||... .+.+...+. +....+..-++++||++-...     .+ .....+...
T Consensus        36 ~pdG~l~vt~~~-------~~~I~~i~p~g~-~~~~~~~~~-~~~gla~~~dG~l~v~~~~~~-----~~-~~~~~~~~~  100 (302)
T d2p4oa1          36 APDGTIFVTNHE-------VGEIVSITPDGN-QQIHATVEG-KVSGLAFTSNGDLVATGWNAD-----SI-PVVSLVKSD  100 (302)
T ss_dssp             CTTSCEEEEETT-------TTEEEEECTTCC-EEEEEECSS-EEEEEEECTTSCEEEEEECTT-----SC-EEEEEECTT
T ss_pred             CCCCCEEEEeCC-------CCEEEEEeCCCC-EEEEEcCCC-CcceEEEcCCCCeEEEecCCc-----eE-EEEEecccc
Confidence            346788887542       246899998865 334333332 112222233678999864322     11 112223333


Q ss_pred             CccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCc---eeecccccccC----C-CCcEEEEeC
Q 016552          224 GEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANT---WDDMREGMVRG----W-RGPVAAMDE  295 (387)
Q Consensus       224 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~---W~~~~~~~~~~----~-~~~~~~~~~  295 (387)
                      .+    -..+...+.....  ...+..-+|.+|+.......++.+|+.+..   |..-+......    . ....+...+
T Consensus       101 ~~----~~~~~~~~~~~~~--n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         101 GT----VETLLTLPDAIFL--NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             SC----EEEEEECTTCSCE--EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             cc----eeeccccCCcccc--ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            33    4444444433221  111223478888875555688899988774   22211111111    1 122345668


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccC-ceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          296 EVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKG-ARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       296 ~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~-~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.+|+.....+.++.+|.....-...... ..... ...++.-+|.||+....++.|..+++...
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            89999988788999999876532211111 00111 12234457888888767777888887743

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.52  E-value=0.034  Score=48.98  Aligned_cols=149  Identities=10%  Similarity=0.037  Sum_probs=86.4

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEE--EECCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAV--GWKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~--~~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      +++++++|+.+.        .+.+||..+++    +..+..+.....   ...++  .-++++.+.++.+..+.++|+.+
T Consensus        18 dg~~la~~~~~~--------~i~iw~~~~~~----~~~~~~l~gH~~---~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNNH--------EVHIYEKSGNK----WVQVHELKEHNG---QVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSSS--------EEEEEEEETTE----EEEEEEEECCSS---CEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCEEEEEeCCC--------EEEEEECCCCC----EEEEEEecCCCC---CEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            566667766533        78899999888    877664432111   12222  23666666666667899999999


Q ss_pred             CceeecccccccCCCCcEEEE-eCCeEEEEeCCCCeEEEEeC--CCCceeEccccccccCceEEEEe--CCeEEEEecCC
Q 016552          273 NTWDDMREGMVRGWRGPVAAM-DEEVLYGIDENSCTLSRYDE--VMDDWKEVVKSDLLKGARHAAAG--GGRVCAVCENG  347 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~-~~~~ly~~~~~~~~l~~yd~--~~~~W~~v~~~~~~~~~~~~~~~--~g~i~v~gg~~  347 (387)
                      ++|..............++.. .+++.++.+..++.+..|+.  ..+.+...............+..  +++.++.|+..
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D  162 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  162 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC
Confidence            998765431111111222332 25566666656676666554  44445443333333333333332  57777887777


Q ss_pred             CeEEEEeccCC
Q 016552          348 GGIVVVDVKAA  358 (387)
Q Consensus       348 ~~i~~~d~~~~  358 (387)
                      ..+.+||....
T Consensus       163 ~~v~v~~~~~~  173 (371)
T d1k8kc_         163 FKCRIFSAYIK  173 (371)
T ss_dssp             SCEEEEECCCT
T ss_pred             cEEEEEeeccC
Confidence            88899987643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.18  Score=42.25  Aligned_cols=187  Identities=11%  Similarity=0.047  Sum_probs=92.9

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      .++..+|..++.||.++       .+.+||..+.+...  .+........+....+.+++.|+.+.        .+..++
T Consensus        21 s~~~~~g~~l~sgs~Dg-------~i~vWd~~~~~~~~--~~~~h~~~V~~v~~~~~~l~s~s~D~--------~~~~~~   83 (342)
T d2ovrb2          21 TCLQFCGNRIVSGSDDN-------TLKVWSAVTGKCLR--TLVGHTGGVWSSQMRDNIIISGSTDR--------TLKVWN   83 (342)
T ss_dssp             EEEEEETTEEEEEETTS-------CEEEEETTTCCEEE--ECCCCSSCEEEEEEETTEEEEEETTS--------CEEEEE
T ss_pred             EEEEECCCEEEEEeCCC-------eEEEEECCCCCEEE--EEeCCCCCEEEEEeCCCccccceecc--------cccccc
Confidence            34555666666676433       57899998876543  22222211222233344556666544        556666


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEE
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYG  300 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~  300 (387)
                      .....    -..........     .......+.....+..+..+..+|..+......-..   ..............++
T Consensus        84 ~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  151 (342)
T d2ovrb2          84 AETGE----CIHTLYGHTST-----VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVV  151 (342)
T ss_dssp             TTTTE----EEEEECCCSSC-----EEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEEC---CSSCEEEEEECSSCEE
T ss_pred             ccccc----ceeccccccee-----EeeeecccccccccccceeEEEeecccccceeeeec---ccccceeeccccceee
Confidence            66655    32222111111     122222333334444445677888777765433211   1111222233344555


Q ss_pred             EeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+..++.+..||.....-.  ...............++..++.|+..+.+.+||+...
T Consensus       152 ~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~  207 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCL--HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG  207 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEE--EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred             eecCCCeEEEeecccceee--EEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc
Confidence            5555677777877655322  2222222334445556666667666677777777643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.41  E-value=0.021  Score=48.22  Aligned_cols=146  Identities=8%  Similarity=0.002  Sum_probs=79.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.+++.|+.+       ..+.+||..+++..++..........+.+. .+++.++.|+.+.        .+.+||..++
T Consensus       147 ~~~~l~~g~~d-------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------~i~~~~~~~~  211 (299)
T d1nr0a2         147 DKQFVAVGGQD-------SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR--------KVIPYSVANN  211 (299)
T ss_dssp             TSCEEEEEETT-------SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS--------CEEEEEGGGT
T ss_pred             ccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccc--------cccccccccc
Confidence            45566666632       357889988877655433322222222222 2456666665543        6789998877


Q ss_pred             ccccCeEEc-CCCCCCCccccceEEE--EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCC-CcEEEEeCCeEEE
Q 016552          225 EKNSRWEKT-GELKDGRFSREAIDAV--GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAAMDEEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~-~~~p~~~~~~~~~~~~--~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~~~~~~ly~  300 (387)
                      .    .... ..+....   ....++  .-++++.+.++.+..+.+||+.+.....+......... ...++..++..++
T Consensus       212 ~----~~~~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~  284 (299)
T d1nr0a2         212 F----ELAHTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV  284 (299)
T ss_dssp             T----EESCCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEE
T ss_pred             c----cccccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEE
Confidence            6    4322 2222111   112222  23677777777777899999988765433211111111 1223334445555


Q ss_pred             EeCCCCeEEEEeC
Q 016552          301 IDENSCTLSRYDE  313 (387)
Q Consensus       301 ~~~~~~~l~~yd~  313 (387)
                      .++.++.|..||.
T Consensus       285 s~s~D~~i~iWdl  297 (299)
T d1nr0a2         285 SAGQDSNIKFWNV  297 (299)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EEeCCCEEEEEec
Confidence            5667788999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.37  E-value=0.12  Score=44.10  Aligned_cols=185  Identities=14%  Similarity=0.005  Sum_probs=99.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      +|+++.+++.        ..+++||..++...+++  ...+.....-.-+++..+++|.+.      -..+.+||..+++
T Consensus        14 dG~~~a~~~~--------g~v~v~d~~~~~~~~~~--~~~~v~~~~~spDg~~l~~~~~~~------g~~v~v~d~~~~~   77 (360)
T d1k32a3          14 DGDLIAFVSR--------GQAFIQDVSGTYVLKVP--EPLRIRYVRRGGDTKVAFIHGTRE------GDFLGIYDYRTGK   77 (360)
T ss_dssp             GGGCEEEEET--------TEEEEECTTSSBEEECS--CCSCEEEEEECSSSEEEEEEEETT------EEEEEEEETTTCC
T ss_pred             CCCEEEEEEC--------CeEEEEECCCCcEEEcc--CCCCEEEEEECCCCCEEEEEEcCC------CCEEEEEECCCCc
Confidence            5666665542        26889999888888874  233333333334777655554432      1357899999988


Q ss_pred             cccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCeEEEEeC--
Q 016552          226 KNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEVLYGIDE--  303 (387)
Q Consensus       226 ~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~--  303 (387)
                          -..+........    ..+..-+|+..+.++....+..+|..+..-..+....... ....+...+|+.+++..  
T Consensus        78 ----~~~~~~~~~~v~----~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          78 ----AEKFEENLGNVF----AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM-ITDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             ----EEECCCCCCSEE----EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC-CCCEEECTTSCEEEEEEEE
T ss_pred             ----EEEeeCCCceEE----eeeecccccccceeccccccccccccccceeeeeeccccc-ccchhhccceeeeeeeccc
Confidence                776653332210    2223337776666666678999999888755443211111 11122223455444321  


Q ss_pred             --------CCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEecc
Q 016552          304 --------NSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVK  356 (387)
Q Consensus       304 --------~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~  356 (387)
                              ..+.+..||.+++.=..+.... ..........+|+.+++++....+.++|..
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGRKIFAATTEN-SHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTEEEECSCSS-SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cccceeeccccceeeeccccCceeeecccc-cccccccccCCCCEEEEEeCCCceEccccc
Confidence                    1235788999876433322211 111223344567766666654445555554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.37  E-value=0.2  Score=42.19  Aligned_cols=62  Identities=11%  Similarity=0.072  Sum_probs=39.8

Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEE--eCCeEEEEecCCCeEEEEeccCC
Q 016552          295 EEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAA--GGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       295 ~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~--~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+.+++.+..++.+..||.++..-.  ............++  .++++++.|+....+.++|....
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~~~~--~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccceeEEeecCceEEEEECCCCcEE--EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            4566677767789999998776422  22222222322233  36778888787888999998854

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.16  Score=41.99  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=77.2

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++.+.|+.+.        .+.+||..+.+    ....-.....     ...++.  -++.+.+.+.....+..++...
T Consensus        28 ~~~~l~s~s~Dg--------~i~iWd~~~~~----~~~~~~~h~~-----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          28 VFSVMVSASEDA--------TIKVWDYETGD----FERTLKGHTD-----SVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             SSSEEEEEESSS--------CEEEEETTTCC----CCEEECCCSS-----CEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             CCCEEEEEeCCC--------eEEEEECCCCC----EEEEEeCCCC-----cEEEEeeecccccccccccccccccccccc
Confidence            567777777654        78899998877    3322111111     111222  2455555555445666677666


Q ss_pred             CceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEE
Q 016552          273 NTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIV  351 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~  351 (387)
                      .............  ..... ..++..++.+..++.+..||.++.....................++.+++.|+....+.
T Consensus        91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 FECIRTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             SCEEECCCCCSSC--EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccc--ceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            6554332211111  11122 22344455555678899999988765443221111111222234577778877778899


Q ss_pred             EEeccCC
Q 016552          352 VVDVKAA  358 (387)
Q Consensus       352 ~~d~~~~  358 (387)
                      ++|..+.
T Consensus       169 ~~~~~~~  175 (317)
T d1vyhc1         169 VWVVATK  175 (317)
T ss_dssp             EEETTTC
T ss_pred             EEeeccc
Confidence            9998864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.09  E-value=0.36  Score=41.36  Aligned_cols=161  Identities=9%  Similarity=-0.031  Sum_probs=89.8

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCC--CCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVT--PRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +|.||++....   ......+..+|+.+...........  .+..-.++.-+|++|+..-...  .......+..+++..
T Consensus        92 dG~l~va~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~--~~~~~g~v~~~~~dg  166 (319)
T d2dg1a1          92 DGRLFVCYLGD---FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY--STNPLGGVYYVSPDF  166 (319)
T ss_dssp             TSCEEEEECTT---SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB--TTBCCEEEEEECTTS
T ss_pred             CCCEEEEecCC---CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccc--cccCcceeEEEeccc
Confidence            57888874311   1233457888888877665432221  2222233344678988643221  122345678888877


Q ss_pred             CccccCeEEcC-CCCCCCccccceEEEEE--CC-EEEEEeeeCCeEEEEECCCCc---ee---ecccccccCCCCc-EEE
Q 016552          224 GEKNSRWEKTG-ELKDGRFSREAIDAVGW--KG-KLCLVNVKGAEGAVYDVVANT---WD---DMREGMVRGWRGP-VAA  292 (387)
Q Consensus       224 ~~~~~~W~~~~-~~p~~~~~~~~~~~~~~--~g-~lyv~gg~~~~i~~yD~~~~~---W~---~~~~~~~~~~~~~-~~~  292 (387)
                      ..    ...+. .+..       .....+  ++ .||+.....+.+++||...+.   ..   .... ......++ .++
T Consensus       167 ~~----~~~~~~~~~~-------pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~-~~~~~~~PdGl~  234 (319)
T d2dg1a1         167 RT----VTPIIQNISV-------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-YFTGHEGPDSCC  234 (319)
T ss_dssp             CC----EEEEEEEESS-------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-ECCSSSEEEEEE
T ss_pred             ce----eEEEeeccce-------eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeee-ccCCccceeeee
Confidence            76    66543 2221       122333  44 589887666789999876442   11   1111 01111112 344


Q ss_pred             E-eCCeEEEEeCCCCeEEEEeCCCCceeEccc
Q 016552          293 M-DEEVLYGIDENSCTLSRYDEVMDDWKEVVK  323 (387)
Q Consensus       293 ~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~  323 (387)
                      + .+|.||+.....+.|.+||++...-.++..
T Consensus       235 vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~  266 (319)
T d2dg1a1         235 IDSDDNLYVAMYGQGRVLVFNKRGYPIGQILI  266 (319)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTSCEEEEEEC
T ss_pred             EcCCCCEEEEEcCCCEEEEECCCCcEEEEEeC
Confidence            4 367899988777899999998775555543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.59  E-value=0.47  Score=38.90  Aligned_cols=176  Identities=11%  Similarity=-0.017  Sum_probs=86.2

Q ss_pred             cEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccc
Q 016552          166 PLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREA  245 (387)
Q Consensus       166 ~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~  245 (387)
                      +..++.........-..............++...+.++.+.        .+.+||..+..    ....-.......   .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------~~~~~~~~~~~----~~~~~~~~~~~~---~  147 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK--------TIKMWEVQTGY----CVKTFTGHREWV---R  147 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTS--------EEEEEETTTCC----EEEEEECCSSCE---E
T ss_pred             cccccccccccccccccccccceeeeccCCCceEEeeccCc--------ceeEeecccce----eeeEEccCCCcc---e
Confidence            34556555554443222222222222223455555555433        67788888777    443221111110   0


Q ss_pred             eEEEEECCEEEEEeeeCCeEEEEECCCCceeecccc----------cccC-------CC--CcEEEEeCCeEEEEeCCCC
Q 016552          246 IDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREG----------MVRG-------WR--GPVAAMDEEVLYGIDENSC  306 (387)
Q Consensus       246 ~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~----------~~~~-------~~--~~~~~~~~~~ly~~~~~~~  306 (387)
                      .....-++.+++.++.+..+..+|..+......-..          .+..       ..  ........+.+++.+..++
T Consensus       148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             eeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            112222566666666666788888876653221000          0000       00  1111123345566666678


Q ss_pred             eEEEEeCCCCceeEccccccccCc--eEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          307 TLSRYDEVMDDWKEVVKSDLLKGA--RHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       307 ~l~~yd~~~~~W~~v~~~~~~~~~--~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+..||..+..-..  ........  ..+...++++++.|+..+.|.+||+.+.
T Consensus       228 ~i~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         228 TIKMWDVSTGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             EEEEEETTTTEEEE--EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             EEEEEECCCCcEEE--EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            89999998875432  22222222  2223346777788777888999999854

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.53  E-value=0.12  Score=43.72  Aligned_cols=156  Identities=10%  Similarity=-0.031  Sum_probs=76.4

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE-eCC-EEEEEecCCCCCCCCCcceEEEEECCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC-SRG-AVYVASGIGSQFSSDVAKSVEKWDLMN  223 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~  223 (387)
                      +++.+++++.+       +.+.+||+.|++-...-.++....-...+. -++ .+||.+..+.        .+.+||..+
T Consensus         7 ~~~~l~~~~~~-------~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~--------~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNYP-------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--------DIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEETT-------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--------EEEEEETTT
T ss_pred             CCcEEEEEcCC-------CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCC--------cEEEEeCcc
Confidence            45667776632       368999999997654333443332222232 344 5788765433        788999988


Q ss_pred             CccccCeEEcCCC-CCCCccccceEEEEECC-EEEEEeeeC-----------CeEEEEECCCCceeecccccccCCCC-c
Q 016552          224 GEKNSRWEKTGEL-KDGRFSREAIDAVGWKG-KLCLVNVKG-----------AEGAVYDVVANTWDDMREGMVRGWRG-P  289 (387)
Q Consensus       224 ~~~~~~W~~~~~~-p~~~~~~~~~~~~~~~g-~lyv~gg~~-----------~~i~~yD~~~~~W~~~~~~~~~~~~~-~  289 (387)
                      .+..  ....... +..........+..-|| .+|+.+...           ..+.++|..+++-...-.....+... .
T Consensus        72 ~~~~--~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  149 (346)
T d1jmxb_          72 CKNT--FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL  149 (346)
T ss_dssp             TEEE--EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred             Ceee--eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEE
Confidence            7622  1111111 10000000011222344 466654321           45667777665432211101111111 1


Q ss_pred             EEEEeCCeEEEEeCCCCeEEEEeCCCCceeEc
Q 016552          290 VAAMDEEVLYGIDENSCTLSRYDEVMDDWKEV  321 (387)
Q Consensus       290 ~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~v  321 (387)
                      .....++++|+.+   ..+..+|..+......
T Consensus       150 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  178 (346)
T d1jmxb_         150 MRAADDGSLYVAG---PDIYKMDVKTGKYTVA  178 (346)
T ss_dssp             EEECTTSCEEEES---SSEEEECTTTCCEEEE
T ss_pred             EEecCCCEEEEeC---CcceEEEccCCCEEEE
Confidence            2223456677653   4577888877766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.50  E-value=0.4  Score=40.56  Aligned_cols=147  Identities=9%  Similarity=-0.007  Sum_probs=82.7

Q ss_pred             EeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEEC--
Q 016552          193 CSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDV--  270 (387)
Q Consensus       193 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~--  270 (387)
                      .-+|+||+.....        ..++.+|+...     .......+...    ...+..-+|.+|+.+.....+..++.  
T Consensus        36 ~pdG~l~vt~~~~--------~~I~~i~p~g~-----~~~~~~~~~~~----~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          36 APDGTIFVTNHEV--------GEIVSITPDGN-----QQIHATVEGKV----SGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CTTSCEEEEETTT--------TEEEEECTTCC-----EEEEEECSSEE----EEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCCCCEEEEeCCC--------CEEEEEeCCCC-----EEEEEcCCCCc----ceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            3467899875443        37888887755     44444333211    12233347899998765555555543  


Q ss_pred             CCCceeecccccccCCCCcEEE-EeCCeEEEEeCCCCeEEEEeCCCCceeEccccc---------cccCceEEEEeCCeE
Q 016552          271 VANTWDDMREGMVRGWRGPVAA-MDEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD---------LLKGARHAAAGGGRV  340 (387)
Q Consensus       271 ~~~~W~~~~~~~~~~~~~~~~~-~~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~---------~~~~~~~~~~~~g~i  340 (387)
                      ...+-+.+.. .+.......++ -.++.+|+.....+.++.+|+.+..=......+         .......+...++.+
T Consensus        99 ~~~~~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l  177 (302)
T d2p4oa1          99 SDGTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL  177 (302)
T ss_dssp             TTSCEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred             cccceeeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCce
Confidence            3333333332 12221112233 357789988777789999999876432222111         111234455567888


Q ss_pred             EEEecCCCeEEEEeccC
Q 016552          341 CAVCENGGGIVVVDVKA  357 (387)
Q Consensus       341 ~v~gg~~~~i~~~d~~~  357 (387)
                      |+.......++.+|+..
T Consensus       178 ~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             EEEETTTTEEEEEEBCT
T ss_pred             eeecCCCCeEEeccccc
Confidence            88877777777777664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.53  Score=38.08  Aligned_cols=147  Identities=7%  Similarity=-0.019  Sum_probs=81.2

Q ss_pred             EEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECC
Q 016552          192 GCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVV  271 (387)
Q Consensus       192 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~  271 (387)
                      ...+++..+.|+.+.        .+.+||..+.+    -...-  ...   .....++..++++.+.++.+..+..+|..
T Consensus        21 ~~~d~~~l~sgs~Dg--------~i~vWd~~~~~----~~~~l--~~H---~~~V~~v~~~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          21 LQYDDQKIVSGLRDN--------TIKIWDKNTLE----CKRIL--TGH---TGSVLCLQYDERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCSSEEEEEESSS--------CEEEEESSSCC----EEEEE--CCC---SSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred             EEEcCCEEEEEeCCC--------eEEEEECCCCc----EEEEE--ecC---CCCEeeeecccceeecccccccccccccc
Confidence            345777778887755        78899998776    33221  111   11134556688877777777889999998


Q ss_pred             CCceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCceeE-ccccccccCceEEEEeCCeEEEEecCCCeE
Q 016552          272 ANTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDDWKE-VVKSDLLKGARHAAAGGGRVCAVCENGGGI  350 (387)
Q Consensus       272 ~~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~W~~-v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i  350 (387)
                      ++...........  .........+ ..+.+...+.+..||..+..-.. .....................+.++....+
T Consensus        84 ~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i  160 (293)
T d1p22a2          84 TGEMLNTLIHHCE--AVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  160 (293)
T ss_dssp             SCCEEEEECCCCS--CEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             ccccccccccccc--cccccccccc-ceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCce
Confidence            8876544321111  1112222333 33444456778888877653222 122222223333334444444555556677


Q ss_pred             EEEeccCC
Q 016552          351 VVVDVKAA  358 (387)
Q Consensus       351 ~~~d~~~~  358 (387)
                      .++|..+.
T Consensus       161 ~~~d~~~~  168 (293)
T d1p22a2         161 KVWNTSTC  168 (293)
T ss_dssp             EEEETTTC
T ss_pred             eeecCCCC
Confidence            77887754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.56  Score=39.80  Aligned_cols=106  Identities=11%  Similarity=-0.023  Sum_probs=56.6

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeE-EcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWE-KTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVAN  273 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~-~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~  273 (387)
                      .+++++.|+.+.        .+.+||..+++    -. .+.....+... ........+|+..+.++.+..+.+||+.++
T Consensus       217 ~~~~l~s~~~d~--------~i~iwd~~~~~----~~~~l~~~~~~v~~-~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         217 SGEFVITVGSDR--------KISCFDGKSGE----FLKYIEDDQEPVQG-GIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TCCEEEEEETTC--------CEEEEETTTCC----EEEECCBTTBCCCS-CEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             cceecccccccc--------ceeeeeecccc----cccccccccccccc-ceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            357777777654        67899998877    43 33211111111 112222347777777777788999999987


Q ss_pred             ceeecccccccCCCCc--EEEEeCCeEEEEeCCCCeEEEEeC
Q 016552          274 TWDDMREGMVRGWRGP--VAAMDEEVLYGIDENSCTLSRYDE  313 (387)
Q Consensus       274 ~W~~~~~~~~~~~~~~--~~~~~~~~ly~~~~~~~~l~~yd~  313 (387)
                      +-...-..........  +....++..++-++.++.|.+||.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         284 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            6321111001111111  222233334444556789999984

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.89  E-value=1.2  Score=41.32  Aligned_cols=118  Identities=17%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             eEEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCC--------CcceeEEEeCCEEEEEecCCCCCC
Q 016552          140 VQLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGCSRGAVYVASGIGSQFS  209 (387)
Q Consensus       140 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~  209 (387)
                      ..-++.++.||+....        ..++.+|..|.  .|+.-+..+..        ......+..+++||+...      
T Consensus        60 stPiv~~g~vyv~t~~--------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------  125 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSW--------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------  125 (560)
T ss_dssp             CCCEEETTEEEEEEGG--------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------
T ss_pred             eCCEEECCEEEEECCC--------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC------
Confidence            3457889999987652        35788899987  58864433211        122345566788887532      


Q ss_pred             CCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCc--eee
Q 016552          210 SDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANT--WDD  277 (387)
Q Consensus       210 ~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~--W~~  277 (387)
                         -..+.++|..+.+..  |+....-+..... .....+++++.+++-....     ..+.+||.+|++  |+.
T Consensus       126 ---~g~l~Alda~tG~~~--w~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         126 ---DGRLIALDAKTGKAI--WSQQTTDPAKPYS-ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             ---TSEEEEEETTTCCEE--EEEECSCTTSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ---CCEEEEEECCCCcEE--eccCccCccccee-eeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence               125788999988865  8765422222111 1134567889887643321     469999999884  653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.82  E-value=0.4  Score=42.94  Aligned_cols=136  Identities=13%  Similarity=0.016  Sum_probs=74.0

Q ss_pred             ceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEE
Q 016552          214 KSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAM  293 (387)
Q Consensus       214 ~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~  293 (387)
                      ..+.++|..+++    =..  .++.+...  ...+..-||+..++.+.+..+.++|+.+++-..+.. .+.+.....++.
T Consensus        42 g~v~v~D~~t~~----v~~--~~~~g~~~--~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~-i~~~~~~~~~~~  112 (432)
T d1qksa2          42 GQIALIDGSTYE----IKT--VLDTGYAV--HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-IKIGSEARSIET  112 (432)
T ss_dssp             TEEEEEETTTCC----EEE--EEECSSCE--EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-EECCSEEEEEEE
T ss_pred             CEEEEEECCCCc----EEE--EEeCCCCe--eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE-EecCCCCCCeEE
Confidence            478889998887    322  22222211  122333467644445555689999998876543332 121111112221


Q ss_pred             ------eCCeEEEEeCCCCeEEEEeCCCCceeEcccccc-----------ccCceEEEEeCCeEE-EEecCCCeEEEEec
Q 016552          294 ------DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDL-----------LKGARHAAAGGGRVC-AVCENGGGIVVVDV  355 (387)
Q Consensus       294 ------~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~-----------~~~~~~~~~~~g~i~-v~gg~~~~i~~~d~  355 (387)
                            .|..||+.+...+.+.+||.++.+-........           .+..+.+...+|..+ +.....+.+.++|.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence                  234577777667899999999987665432211           111122334455544 44445677888887


Q ss_pred             cCC
Q 016552          356 KAA  358 (387)
Q Consensus       356 ~~~  358 (387)
                      ...
T Consensus       193 ~~~  195 (432)
T d1qksa2         193 TDL  195 (432)
T ss_dssp             TCS
T ss_pred             cCC
Confidence            753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.58  Score=38.71  Aligned_cols=151  Identities=8%  Similarity=-0.110  Sum_probs=78.7

Q ss_pred             CCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE--CCEEEEEeeeCCeEEEEECCC
Q 016552          195 RGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW--KGKLCLVNVKGAEGAVYDVVA  272 (387)
Q Consensus       195 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~--~g~lyv~gg~~~~i~~yD~~~  272 (387)
                      ++++.+.|+.+.        .+.+||..++..............+.     .+.+..  ++.+.+.++.+..+..+|...
T Consensus        22 ~~~~L~s~s~Dg--------~v~iwd~~~~~~~~~~~~~~~h~~~V-----~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          22 SKSLLLITSWDG--------SLTVYKFDIQAKNVDLLQSLRYKHPL-----LCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             GGTEEEEEETTS--------EEEEEEEETTTTEEEEEEEEECSSCE-----EEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCEEEEEECCC--------eEEEEEccCCCcceEEEEecCCCCCE-----EEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            455666666544        77888876654210011111111110     122222  345666666667899999887


Q ss_pred             CceeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ceeEcccccc----ccCceEEEEeCCeEEEEecC
Q 016552          273 NTWDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DWKEVVKSDL----LKGARHAAAGGGRVCAVCEN  346 (387)
Q Consensus       273 ~~W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W~~v~~~~~----~~~~~~~~~~~g~i~v~gg~  346 (387)
                      ......................++..++.++..+.+..||..+.  ..........    ...........+..++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (342)
T d1yfqa_          89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN  168 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEES
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecC
Confidence            65443332111111112223345555666666788999987543  2222222211    11233345566777778778


Q ss_pred             CCeEEEEeccCC
Q 016552          347 GGGIVVVDVKAA  358 (387)
Q Consensus       347 ~~~i~~~d~~~~  358 (387)
                      ...+.++|....
T Consensus       169 d~~i~~~~~~~~  180 (342)
T d1yfqa_         169 NSQVQWFRLPLC  180 (342)
T ss_dssp             TTEEEEEESSCC
T ss_pred             CCcEEEEecccC
Confidence            888999998755

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.70  E-value=0.94  Score=37.49  Aligned_cols=183  Identities=7%  Similarity=-0.073  Sum_probs=107.2

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEECC
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWDLM  222 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  222 (387)
                      .++.||+.-.       ....+++.+.....-+.+...... .-...++  .+++||+....        ...+.+.++.
T Consensus        46 ~~~~iywsd~-------~~~~I~~~~l~g~~~~~v~~~~~~-~p~~iAvD~~~~~lY~~d~~--------~~~I~~~~~d  109 (263)
T d1npea_          46 VDKVVYWTDI-------SEPSIGRASLHGGEPTTIIRQDLG-SPEGIALDHLGRTIFWTDSQ--------LDRIEVAKMD  109 (263)
T ss_dssp             TTTEEEEEET-------TTTEEEEEESSSCCCEEEECTTCC-CEEEEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             CCCEEEEEEC-------CCCeEEEEEcccCCcEEEEEeccc-cccEEEEeccCCeEEEeccC--------CCEEEEEecC
Confidence            3577887522       124567777765544443211111 1122333  37899998543        2377888876


Q ss_pred             CCccccCeEEcC--CCCCCCccccceEEEE--ECCEEEEEeeeC--CeEEEEECCCCceeecccccccCCCCc-EEEE--
Q 016552          223 NGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGP-VAAM--  293 (387)
Q Consensus       223 ~~~~~~~W~~~~--~~p~~~~~~~~~~~~~--~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~-~~~~--  293 (387)
                      ...    =+.+.  .+..+      ...++  .+|.+|......  ..++..++....-..+..   .+...+ ++++  
T Consensus       110 g~~----~~~l~~~~l~~p------~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~---~~~~~P~glaiD~  176 (263)
T d1npea_         110 GTQ----RRVLFDTGLVNP------RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---DNLGLPNGLTFDA  176 (263)
T ss_dssp             SCS----CEEEECSSCSSE------EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---TTCSCEEEEEEET
T ss_pred             Cce----EEEEecccccCC------cEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee---ecccccceEEEee
Confidence            554    22222  12111      22223  378898775322  458888877654443321   122222 3444  


Q ss_pred             eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEecCCCeEEEEeccCC
Q 016552          294 DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       294 ~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+++||+.+...+.|...|.+...=+.+..  ....++.++..+++||+.-.+++.|+.+|..+.
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~--~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCCeEEEEC--CCCCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            368999998878899999998764443322  233456788889999999777889999999854

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.67  E-value=0.62  Score=38.82  Aligned_cols=51  Identities=12%  Similarity=0.066  Sum_probs=32.7

Q ss_pred             CeEEEEeCCCCceeEccccccccCceEE-EEeCCeEEEEecCCCeEEEEeccCC
Q 016552          306 CTLSRYDEVMDDWKEVVKSDLLKGARHA-AAGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       306 ~~l~~yd~~~~~W~~v~~~~~~~~~~~~-~~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      +.+.+||.++.+.......+  ....++ +.-+|+.+.+|+.++.|.+||..+.
T Consensus       260 ~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         260 NVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ccEEEEECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            56888999887655433322  222223 3346776666777788999999954

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.32  E-value=1.6  Score=38.66  Aligned_cols=175  Identities=13%  Similarity=-0.008  Sum_probs=92.9

Q ss_pred             CccEEEeccCCceeeCCCCCCCCcceeE-EEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCc
Q 016552          164 TRPLIFDPICRTWTFGPELVTPRRWCAA-GCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRF  241 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~l~~~p~~r~~~~~-~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~  241 (387)
                      ..+.++|..|++-...  ++....-+.. ..-+| .+|++ +.+        ..+.++|..+.+    -..+..++....
T Consensus        42 g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~l~~~-s~d--------g~v~~~d~~t~~----~~~~~~i~~~~~  106 (432)
T d1qksa2          42 GQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVI-GRD--------GKVNMIDLWMKE----PTTVAEIKIGSE  106 (432)
T ss_dssp             TEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEE-ETT--------SEEEEEETTSSS----CCEEEEEECCSE
T ss_pred             CEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCEEEEE-cCC--------CCEEEEEeeCCC----ceEEEEEecCCC
Confidence            4688899988876542  2222222222 23355 45654 332        278899998877    443333332211


Q ss_pred             cccceEEEEE------CCE-EEEEeeeCCeEEEEECCCCceeeccccc----------ccCCCCcEEE-Ee-CCeEEEEe
Q 016552          242 SREAIDAVGW------KGK-LCLVNVKGAEGAVYDVVANTWDDMREGM----------VRGWRGPVAA-MD-EEVLYGID  302 (387)
Q Consensus       242 ~~~~~~~~~~------~g~-lyv~gg~~~~i~~yD~~~~~W~~~~~~~----------~~~~~~~~~~-~~-~~~ly~~~  302 (387)
                          +...+.      ||+ +|+.+.....+.++|.++++-.......          +.+. ..+++ .. +..+++-.
T Consensus       107 ----~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         107 ----ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR-VAAILASHYRPEFIVNV  181 (432)
T ss_dssp             ----EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC-EEEEEECSSSSEEEEEE
T ss_pred             ----CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc-eeEEEECCCCCEEEEEE
Confidence                222222      565 6777776789999999988754332110          1110 11112 22 33455555


Q ss_pred             CCCCeEEEEeCCCCceeEccccccccCceE-EEEeCCe-EEEEecCCCeEEEEeccCC
Q 016552          303 ENSCTLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGR-VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       303 ~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~-i~v~gg~~~~i~~~d~~~~  358 (387)
                      ...+.+..+|..+.+-.++...+.-...+. ...-+|+ +++.+..++.+.++|..+.
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            557889999987755444433332222222 2334555 5555455677788887754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.75  E-value=1.4  Score=36.93  Aligned_cols=132  Identities=12%  Similarity=0.001  Sum_probs=74.7

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC--CeEEEEECCCCceeecccccccCCCCcEEE
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG--AEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~--~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      .+.+||..++.    ..+++.  ..+.   ...+..-||+..++.+..  ..+.++|.+++.-..+.... ..  ...++
T Consensus        25 ~v~v~d~~~~~----~~~~~~--~~~v---~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~-~~--v~~~~   92 (360)
T d1k32a3          25 QAFIQDVSGTY----VLKVPE--PLRI---RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL-GN--VFAMG   92 (360)
T ss_dssp             EEEEECTTSSB----EEECSC--CSCE---EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC-CS--EEEEE
T ss_pred             eEEEEECCCCc----EEEccC--CCCE---EEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC-ce--EEeee
Confidence            56777887777    766641  1111   022223378765554433  46889999998776654311 11  12223


Q ss_pred             E-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccCceEEEEeCCeEEEEec----------CCCeEEEEeccCC
Q 016552          293 M-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKGARHAAAGGGRVCAVCE----------NGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~~~~~~~~~g~i~v~gg----------~~~~i~~~d~~~~  358 (387)
                      . .+++.++.+...+.++.||.++..-..+...............+|+.++++.          ....+.++|..+.
T Consensus        93 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          93 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            2 3566666666678899999988876554433322223334455666666543          1235778888754

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.68  Score=36.57  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=38.4

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceee-----ccc---ccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDD-----MRE---GMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~-----~~~---~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      ++++|++.|.  ..+.||..+++=..     +..   ++|.  ...++...+|++|++-+  ...+.||..+..
T Consensus       116 ~~~~Y~FkG~--~y~ry~~~~~~vd~gyPk~I~~~w~Gvp~--~iDAAf~~~g~~YfFkg--~~y~r~~~~~~~  183 (195)
T d1su3a2         116 TGKTYFFVAN--KYWRYDEYKRSMDPGYPKMIAHDFPGIGH--KVDAVFMKDGFFYFFHG--TRQYKFDPKTKR  183 (195)
T ss_dssp             TTEEEEEETT--EEEEEETTTTEECSSCSEEHHHHSTTSCS--CCSEEEEETTEEEEEET--TEEEEEETTTTE
T ss_pred             CCeEEEEeCC--EEEEEeccCccccCCcccccccccCCCCC--CccEEEEECCeEEEEEC--CEEEEEeCCcCE
Confidence            5799999774  68999988764211     110   1111  12345567889999964  478889987653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=1.6  Score=35.94  Aligned_cols=144  Identities=11%  Similarity=-0.025  Sum_probs=90.1

Q ss_pred             eCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcC--CCCCCCccccceEEEE--ECCEEEEEeeeC-CeEEEE
Q 016552          194 SRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTG--ELKDGRFSREAIDAVG--WKGKLCLVNVKG-AEGAVY  268 (387)
Q Consensus       194 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~--~~p~~~~~~~~~~~~~--~~g~lyv~gg~~-~~i~~y  268 (387)
                      .+++||+.-..        ...++++++....    -..+.  .+..+      ...++  .+|.+|+..... ..|+..
T Consensus        87 ~~~~lY~~d~~--------~~~I~v~~~~g~~----~~~~~~~~~~~P------~~l~vd~~~g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          87 IHSNIYWTDSV--------LGTVSVADTKGVK----RKTLFRENGSKP------RAIVVDPVHGFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             TTTEEEEEETT--------TTEEEEEETTSSS----EEEEEECTTCCE------EEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             ccceEEEEecC--------CCEEEeEecCCce----EEEEEcCCCCCc------ceEEEEcccCeEEEeccCCCcceeEe
Confidence            47899997432        2378889887665    33322  12111      22232  268899875322 578888


Q ss_pred             ECCCCceeecccccccCCCC-cEEEE--eCCeEEEEeCCCCeEEEEeCCCCceeEccccc-cccCceEEEEeCCeEEEEe
Q 016552          269 DVVANTWDDMREGMVRGWRG-PVAAM--DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSD-LLKGARHAAAGGGRVCAVC  344 (387)
Q Consensus       269 D~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~-~~~~~~~~~~~~g~i~v~g  344 (387)
                      ++....-..+-.   ..... .++++  .+++||..+...+.|..+|.++..=..+.... ....+..++..++.||+.-
T Consensus       149 ~~dGs~~~~l~~---~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td  225 (266)
T d1ijqa1         149 GLNGVDIYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD  225 (266)
T ss_dssp             ETTSCCEEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred             ccCCCceecccc---cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence            887654444321   11111 23444  37789999988889999999875433333222 2344677888899999997


Q ss_pred             cCCCeEEEEeccCC
Q 016552          345 ENGGGIVVVDVKAA  358 (387)
Q Consensus       345 g~~~~i~~~d~~~~  358 (387)
                      ...+.|+.+|..++
T Consensus       226 ~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         226 IINEAIFSANRLTG  239 (266)
T ss_dssp             TTTTEEEEEETTTC
T ss_pred             CCCCeEEEEECCCC
Confidence            77788988887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.30  E-value=0.66  Score=43.17  Aligned_cols=115  Identities=11%  Similarity=0.012  Sum_probs=72.1

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc-------cccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--
Q 016552          248 AVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG-------MVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--  316 (387)
Q Consensus       248 ~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~-------~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--  316 (387)
                      -++.||+||+....+ .++++|.+++  .|+.-+..       .........++..++++|+.. .++.|+++|.++.  
T Consensus        62 Piv~~g~vyv~t~~~-~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~l~Alda~tG~~  139 (560)
T d1kv9a2          62 PLFHDGVIYTSMSWS-RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-LDGRLIALDAKTGKA  139 (560)
T ss_dssp             CEEETTEEEEEEGGG-EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-TTSEEEEEETTTCCE
T ss_pred             CEEECCEEEEECCCC-eEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe-CCCEEEEEECCCCcE
Confidence            467899999886654 7899999988  59743210       011112345566778887765 3678999999886  


Q ss_pred             ceeEcccccc--ccCceEEEEeCCeEEEEecC-----CCeEEEEeccCCCCCCceEE
Q 016552          317 DWKEVVKSDL--LKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       317 ~W~~v~~~~~--~~~~~~~~~~~g~i~v~gg~-----~~~i~~~d~~~~~~~~~W~~  366 (387)
                      .|+.-...+.  ......-...+|.+++-+..     ...|..||..++  ...|+.
T Consensus       140 ~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG--~~~W~~  194 (560)
T d1kv9a2         140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG--KLAWRF  194 (560)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEE
T ss_pred             EeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCc--eEEeee
Confidence            4765332221  11223345567777664322     246899999865  356875

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=1.5  Score=34.32  Aligned_cols=148  Identities=18%  Similarity=0.087  Sum_probs=75.8

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCCceee------CCCCCCCCcceeEEE--eCCEEEEEecCCCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICRTWTF------GPELVTPRRWCAAGC--SRGAVYVASGIGSQFSSDV  212 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~------l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~  212 (387)
                      +++.++|.+|++-|.         .+|.++.....+..      -+.+|..- . ++..  .++++|++-|.        
T Consensus        13 Av~~~~g~~y~Fkg~---------~~wr~~~~~~~~~p~~i~~~w~~lp~~I-D-AAf~~~~~~~~yffkg~--------   73 (192)
T d1pexa_          13 AITSLRGETMIFKDR---------FFWRLHPQQVDAELFLTKSFWPELPNRI-D-AAYEHPSHDLIFIFRGR--------   73 (192)
T ss_dssp             EEEEETTEEEEEETT---------EEEEECSSSSCCEEEEHHHHCTTSCSSC-C-EEEEETTTTEEEEEETT--------
T ss_pred             EEEEcCCeEEEEECC---------EEEEEcCCCCCCcccchhhhCcCCCCcc-c-ceEEEcCCCEEEEEcCC--------
Confidence            455688999999873         33444433222211      12233211 1 2222  26788888663        


Q ss_pred             cceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCcee-----eccc---c
Q 016552          213 AKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWD-----DMRE---G  281 (387)
Q Consensus       213 ~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~-----~~~~---~  281 (387)
                        ..++|+..+-...+ =..+..+..+... ....++..   ++++|++.|  +..+.||..++.=.     .+..   +
T Consensus        74 --~~w~y~~~~~~~gy-Pk~i~~~~~~~~~-~~idaA~~~~~~~~~y~Fkg--~~y~~y~~~~~~~~~~~pk~I~~~w~g  147 (192)
T d1pexa_          74 --KFWALNGYDILEGY-PKKISELGLPKEV-KKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIEEDFPG  147 (192)
T ss_dssp             --EEEEESTTCCCTTC-SEESTTTTCCTTC-CCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHHHHSTT
T ss_pred             --EEEEEcCCcccCCC-CeEeeeeecCCCC-CCccEEEEECCCCEEEEEeC--CEEEEEcCccccccCCCcEEHhhcCCC
Confidence              45677654433100 0123321111111 11233332   589999876  46889998765321     1111   1


Q ss_pred             cccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          282 MVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       282 ~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      ++.  ...++...+|++|++.  .+..+.||..+.+
T Consensus       148 vp~--~vdAa~~~~g~~YfF~--g~~y~r~~~~~~~  179 (192)
T d1pexa_         148 IGD--KVDAVYEKNGYIYFFN--GPIQFEYSIWSNR  179 (192)
T ss_dssp             SCS--CCSEEEEETTEEEEEE--TTEEEEEETTTTE
T ss_pred             CCC--CceEEEEeCCEEEEEE--CCEEEEEeCCcCe
Confidence            111  1234445688999996  4578899987764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.86  E-value=1.1  Score=41.75  Aligned_cols=116  Identities=9%  Similarity=0.069  Sum_probs=73.1

Q ss_pred             EEEECCEEEEEeeeCCeEEEEEC-CCC--ceeeccccccc-------CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          248 AVGWKGKLCLVNVKGAEGAVYDV-VAN--TWDDMREGMVR-------GWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       248 ~~~~~g~lyv~gg~~~~i~~yD~-~~~--~W~~~~~~~~~-------~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      -++.||+||+.....+.+.+.|. +++  .|+.-+.....       ......+++.+++||+-. .++.+++.|.++.+
T Consensus        58 P~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-~~g~l~alda~tG~  136 (571)
T d2ad6a1          58 PLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-ANGHLLALDAKTGK  136 (571)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-TTSEEEEEETTTCC
T ss_pred             CEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-CCCcEEeeehhhhh
Confidence            35679999998765557999997 445  68754321111       111234567788888764 46899999999974


Q ss_pred             --eeE-cccc-ccccCceEEEEeCCeEEEEecC-----CCeEEEEeccCCCCCCceEE
Q 016552          318 --WKE-VVKS-DLLKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       318 --W~~-v~~~-~~~~~~~~~~~~~g~i~v~gg~-----~~~i~~~d~~~~~~~~~W~~  366 (387)
                        |.. +... +.......-+.++++|++-+..     ...|..||..++  ...|+.
T Consensus       137 ~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG--~~~W~~  192 (571)
T d2ad6a1         137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG--ELKWRA  192 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC--CEEEEE
T ss_pred             hhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCC--cEEEEE
Confidence              654 2221 1111223336677888776542     357999999865  457886

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.64  E-value=1.3  Score=34.68  Aligned_cols=55  Identities=13%  Similarity=0.203  Sum_probs=39.0

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCc-----eeecccccccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANT-----WDDMREGMVRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~-----W~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      ++++|++.|.  ..+.||..++.     |..++.       ..+++..+|++|++.  ...-+.||..+..
T Consensus       110 ~~~~yfFkg~--~yw~yd~~~~~~~~~~w~gip~-------~daA~~~~g~~YfFk--g~~y~r~~~~~~~  169 (192)
T d1qhua1         110 DEGILFFQGN--RKWFWDLTTGTKKERSWPAVGN-------CTSALRWLGRYYCFQ--GNQFLRFNPVSGE  169 (192)
T ss_dssp             SSEEEEEETT--EEEEEETTTTEEEEECCTTSCC-------CSEEEEETTEEEEEE--TTEEEEECTTTCC
T ss_pred             CCeEEEEeCC--eEEEEeCCCCCcccccccCcCC-------cceeEEeCCcEEEEE--CCEEEEEcCCcce
Confidence            7899999764  68999988763     433321       235556789999995  3478899987753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.57  E-value=0.91  Score=42.32  Aligned_cols=114  Identities=13%  Similarity=0.019  Sum_probs=71.1

Q ss_pred             EEECCEEEEEeeeCCeEEEEECCCC--ceeeccccc-------ccCCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCCc--
Q 016552          249 VGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREGM-------VRGWRGPVAAMDEEVLYGIDENSCTLSRYDEVMDD--  317 (387)
Q Consensus       249 ~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~~-------~~~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~~--  317 (387)
                      ++.||+||+.+..+ .++++|.+++  .|+.-....       ........+++.++++|+.. .++.++++|.++.+  
T Consensus        74 iv~~g~vyv~t~~~-~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-~~g~l~alda~tG~~~  151 (573)
T d1kb0a2          74 VVVDGIMYVSASWS-VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-WDGRLIALDAATGKEV  151 (573)
T ss_dssp             EEETTEEEEECGGG-CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             EEECCEEEEECCCC-eEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-cccceeeeccccccce
Confidence            56799999886554 7999999988  587432110       01111335667788888764 36789999998874  


Q ss_pred             eeEccc-ccc--ccCceEEEEeCCeEEEEecC-----CCeEEEEeccCCCCCCceEE
Q 016552          318 WKEVVK-SDL--LKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       318 W~~v~~-~~~--~~~~~~~~~~~g~i~v~gg~-----~~~i~~~d~~~~~~~~~W~~  366 (387)
                      |+.-.. .+.  ......-+.++|.+++-+..     ...|..||..++  ...|+.
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG--~~~W~~  206 (573)
T d1kb0a2         152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG--ERKWRW  206 (573)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEE
T ss_pred             ecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCc--cceeee
Confidence            765322 111  11223345667777664321     257999999865  346885

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=2.3  Score=34.99  Aligned_cols=145  Identities=13%  Similarity=0.019  Sum_probs=84.2

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC--CCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE--LVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~--~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      .++.||+.-.       ....+.++++....-+.+-.  +..|+   ..++  .++.+|+.....       ...++..+
T Consensus        87 ~~~~lY~~d~-------~~~~I~v~~~~g~~~~~~~~~~~~~P~---~l~vd~~~g~ly~~~~~~-------~~~I~r~~  149 (266)
T d1ijqa1          87 IHSNIYWTDS-------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT-------PAKIKKGG  149 (266)
T ss_dssp             TTTEEEEEET-------TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS-------SCEEEEEE
T ss_pred             ccceEEEEec-------CCCEEEeEecCCceEEEEEcCCCCCcc---eEEEEcccCeEEEeccCC-------CcceeEec
Confidence            4789999743       22468888887665433211  22222   2222  367899874221       23577777


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCC-CcEEEEeCC
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWR-GPVAAMDEE  296 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~-~~~~~~~~~  296 (387)
                      .....    -..+..-... .    ..+..+   +++||+.......|+.+|+....=..+.. ...... ..++++.++
T Consensus       150 ~dGs~----~~~l~~~~~~-~----p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-~~~~~~~p~~lav~~~  219 (266)
T d1ijqa1         150 LNGVD----IYSLVTENIQ-W----PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFED  219 (266)
T ss_dssp             TTSCC----EEEEECSSCS-C----EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEETT
T ss_pred             cCCCc----eecccccccc-e----eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-CCCcccccEEEEEECC
Confidence            76554    4443321111 1    122333   67899997766789999987654333322 111111 236778899


Q ss_pred             eEEEEeCCCCeEEEEeCCCC
Q 016552          297 VLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       297 ~ly~~~~~~~~l~~yd~~~~  316 (387)
                      .||+.+...+.|+..|..+.
T Consensus       220 ~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         220 KVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEECCCCeEEEEECCCC
Confidence            99999877788999886654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=2.2  Score=34.59  Aligned_cols=170  Identities=11%  Similarity=-0.072  Sum_probs=80.9

Q ss_pred             ccEEEeccCCceeeCCCCCCCCcceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcccc
Q 016552          165 RPLIFDPICRTWTFGPELVTPRRWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSRE  244 (387)
Q Consensus       165 ~~~vyd~~t~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~  244 (387)
                      .+.+++..++.+...-...   ....+...++..+++|+.+.       +.+.+|+.....    -......+.. .   
T Consensus       102 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~-------~~v~~~~~~~~~----~~~~~~~~~~-~---  163 (287)
T d1pgua2         102 DLLILQSFTGDIIKSVRLN---SPGSAVSLSQNYVAVGLEEG-------NTIQVFKLSDLE----VSFDLKTPLR-A---  163 (287)
T ss_dssp             EEEEEETTTCCEEEEEECS---SCEEEEEECSSEEEEEETTT-------SCEEEEETTEEE----EEEECSSCCS-S---
T ss_pred             cceeeeccceeeeeecccc---ceeeeeeccCcceeeecccc-------ceeeeeeccccc----eeeeeeeccC-C---
Confidence            4566777776655422211   11223344555556665533       256778764333    1111111111 1   


Q ss_pred             ceEEE--EECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE-----------EeCCeEEEEeCCCCeEEEE
Q 016552          245 AIDAV--GWKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA-----------MDEEVLYGIDENSCTLSRY  311 (387)
Q Consensus       245 ~~~~~--~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~-----------~~~~~ly~~~~~~~~l~~y  311 (387)
                      ...++  ..++...+.+..+..+..||..+..-..... ....-...+++           ..++.+++.++.++.+++|
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw  242 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY  242 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred             ceeEEEeccCccccccccccccccceeecccccccccc-cccccccceeeecccccccccccCCCCeeEeecCCCeEEEE
Confidence            12222  2366666666666789999988764322110 00000001111           2344566666677899999


Q ss_pred             eCCCCceeEccccccccCc-eEEE-EeCCeEEEEecCCCeEEEEec
Q 016552          312 DEVMDDWKEVVKSDLLKGA-RHAA-AGGGRVCAVCENGGGIVVVDV  355 (387)
Q Consensus       312 d~~~~~W~~v~~~~~~~~~-~~~~-~~~g~i~v~gg~~~~i~~~d~  355 (387)
                      |.++.. ..+..+...... .++. .-+++ ++.+|....|.+||+
T Consensus       243 ~~~~~~-~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         243 SVKRPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             ESSCTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             ECCCCC-eEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            986531 111112122222 2222 33455 455566667888775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.47  E-value=0.92  Score=42.29  Aligned_cols=120  Identities=11%  Similarity=0.119  Sum_probs=70.3

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECC-CCccccCeEEcCCCCCCCcc-----ccceEEEEECCEEEEEeeeCC
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLM-NGEKNSRWEKTGELKDGRFS-----REAIDAVGWKGKLCLVNVKGA  263 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~~~~~W~~~~~~p~~~~~-----~~~~~~~~~~g~lyv~gg~~~  263 (387)
                      ...+.+++|||..+..        ..+.+.|.. |++..  |+.-+..+.....     ......+..+++||+.... .
T Consensus        57 tP~v~~g~vyv~t~~~--------~~v~Alda~~tG~~~--W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~-g  125 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFP--------NNTYALNLNDPGKIV--WQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN-G  125 (571)
T ss_dssp             CCEEETTEEEEECSTT--------TCEEEEETTCTTSEE--EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-S
T ss_pred             CCEEECCEEEEecCCC--------CeEEEEeCCCCCceE--EEecCCCCcccccccccCcCCCcceeeCCeEEEEeCC-C
Confidence            4557899999985432        256777764 56655  7754433221110     0011246678999876543 4


Q ss_pred             eEEEEECCCCc--eee-cccccccCCCCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceeE
Q 016552          264 EGAVYDVVANT--WDD-MREGMVRGWRGPVAAMDEEVLYGIDE-----NSCTLSRYDEVMD--DWKE  320 (387)
Q Consensus       264 ~i~~yD~~~~~--W~~-~~~~~~~~~~~~~~~~~~~~ly~~~~-----~~~~l~~yd~~~~--~W~~  320 (387)
                      .+.+.|.++++  |.. +...........+.++.++++|+-..     ..+.|.+||.+++  .|+.
T Consensus       126 ~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             cEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            78999999884  764 22211111112334566778877543     2467999999887  4764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=91.81  E-value=2.2  Score=35.29  Aligned_cols=64  Identities=16%  Similarity=0.069  Sum_probs=42.8

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCcee-ecccccccCCCCcEEEE-eC-CeEEEEeCCCCeEEEEeCCCCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWD-DMREGMVRGWRGPVAAM-DE-EVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~-~~~~~~~~~~~~~~~~~-~~-~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      +++.++++..++.+.+||+++++=. ++.  .+.+.....+++ -+ ..+|+.+..++.|..||.++.+
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~--~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~   73 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK   73 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEE--cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe
Confidence            6787788887789999999998632 222  121211223443 24 4578887778899999998773

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=1.7  Score=35.93  Aligned_cols=149  Identities=13%  Similarity=0.012  Sum_probs=72.2

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCE-EEEEeeeCCeEEEEECCCCc
Q 016552          196 GAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGK-LCLVNVKGAEGAVYDVVANT  274 (387)
Q Consensus       196 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~-lyv~gg~~~~i~~yD~~~~~  274 (387)
                      ..+||.+..+.        .+.+||..++..   ...+.....+...  ...+..-||+ ||+.+..+..+.+|+...+.
T Consensus         4 ~~v~v~~~~~~--------~I~v~~~~~~~~---l~~~~~~~~~~~v--~~la~spDG~~L~v~~~~d~~i~~~~i~~~~   70 (333)
T d1ri6a_           4 QTVYIASPESQ--------QIHVWNLNHEGA---LTLTQVVDVPGQV--QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   70 (333)
T ss_dssp             EEEEEEEGGGT--------EEEEEEECTTSC---EEEEEEEECSSCC--CCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eEEEEECCCCC--------cEEEEEEcCCCC---eEEEEEEcCCCCE--eEEEEeCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            35788876544        777887754431   3333211111111  0223344665 66665545788999888776


Q ss_pred             eeecc-cccccCCCCcEEEEe--CCeEEEEeCCCCeEEEEeCCCCceeEcccc-ccccCc-eEEEEeCCe-EEEEecCCC
Q 016552          275 WDDMR-EGMVRGWRGPVAAMD--EEVLYGIDENSCTLSRYDEVMDDWKEVVKS-DLLKGA-RHAAAGGGR-VCAVCENGG  348 (387)
Q Consensus       275 W~~~~-~~~~~~~~~~~~~~~--~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~-~~~~~~-~~~~~~~g~-i~v~gg~~~  348 (387)
                      +.... .....+.....+++.  |..||+.+...+.+..|+.+...-...... ...... ...+..+++ +++......
T Consensus        71 ~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          71 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence            65322 111222222234433  345777665567788888766543332221 111111 122333444 333333445


Q ss_pred             eEEEEeccC
Q 016552          349 GIVVVDVKA  357 (387)
Q Consensus       349 ~i~~~d~~~  357 (387)
                      .+.+++...
T Consensus       151 ~i~~~~~~~  159 (333)
T d1ri6a_         151 RICLFTVSD  159 (333)
T ss_dssp             EEEEEEECT
T ss_pred             eeeEEEecc
Confidence            566666553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.37  E-value=6.6  Score=36.06  Aligned_cols=116  Identities=20%  Similarity=0.293  Sum_probs=71.2

Q ss_pred             EEEEECCEEEEEecccCCCCCCCCccEEEeccCC--ceeeCCCCCCC--------CcceeEEEeCCEEEEEecCCCCCCC
Q 016552          141 QLVSLSGKLILLAATTHNFNPALTRPLIFDPICR--TWTFGPELVTP--------RRWCAAGCSRGAVYVASGIGSQFSS  210 (387)
Q Consensus       141 ~~~~~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~--~W~~l~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~  210 (387)
                      .-++.++.||+....        ..++.+|+.|.  .|+.-+..+..        ......+..++++|+...       
T Consensus        72 tPiv~~g~vyv~t~~--------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------  136 (573)
T d1kb0a2          72 TPVVVDGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------  136 (573)
T ss_dssp             CCEEETTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred             CCEEECCEEEEECCC--------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------
Confidence            346689999987542        35888999987  58764433211        112345567888887531       


Q ss_pred             CCcceEEEEECCCCccccCeEEcC-CCCCCCccccceEEEEECCEEEEEeeeC-----CeEEEEECCCCc--ee
Q 016552          211 DVAKSVEKWDLMNGEKNSRWEKTG-ELKDGRFSREAIDAVGWKGKLCLVNVKG-----AEGAVYDVVANT--WD  276 (387)
Q Consensus       211 ~~~~~v~~yd~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~g~lyv~gg~~-----~~i~~yD~~~~~--W~  276 (387)
                        -..+.++|..+++..  |+.-. ..+...+. .....+++++++|+-+...     ..+.+||..+++  |+
T Consensus       137 --~g~l~alda~tG~~~--W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         137 --DGRLIALDAATGKEV--WHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             --TSEEEEEETTTCCEE--EEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             --ccceeeeccccccce--ecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceee
Confidence              125678899988866  87543 22222111 1133567899987643211     579999999984  75

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.35  E-value=3.9  Score=33.42  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=84.6

Q ss_pred             ECCEEEEEecccCCCCCCCCccEEEeccCCceeeCCC--CCCCCcceeEEE--eCCEEEEEecCCCCCCCCCcceEEEEE
Q 016552          145 LSGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPE--LVTPRRWCAAGC--SRGAVYVASGIGSQFSSDVAKSVEKWD  220 (387)
Q Consensus       145 ~~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~--~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd  220 (387)
                      .++.||+.-..       ...+.++++....=+.+..  +..|+   ..++  .++.+|+.-....      ...++..+
T Consensus        89 ~~~~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~p~---~l~vdp~~g~ly~t~~~~~------~~~I~r~~  152 (263)
T d1npea_          89 LGRTIFWTDSQ-------LDRIEVAKMDGTQRRVLFDTGLVNPR---GIVTDPVRGNLYWTDWNRD------NPKIETSH  152 (263)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSEE---EEEEETTTTEEEEEECCSS------SCEEEEEE
T ss_pred             cCCeEEEeccC-------CCEEEEEecCCceEEEEecccccCCc---EEEEecccCcEEEeecCCC------CcEEEEec
Confidence            47889987542       2467788876543333221  22222   2223  3678887642211      12466667


Q ss_pred             CCCCccccCeEEcCCCCCCCccccceEEEEE---CCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEEEeCCe
Q 016552          221 LMNGEKNSRWEKTGELKDGRFSREAIDAVGW---KGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAAMDEEV  297 (387)
Q Consensus       221 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~---~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~~~~~~  297 (387)
                      .....    -..+..-... .    ..+..+   +++||++....+.++++|.....=+.+......+   .++++.++.
T Consensus       153 ~dG~~----~~~i~~~~~~-~----P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P---~~lav~~~~  220 (263)
T d1npea_         153 MDGTN----RRILAQDNLG-L----PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP---FAVTSYGKN  220 (263)
T ss_dssp             TTSCC----CEEEECTTCS-C----EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE---EEEEEETTE
T ss_pred             CCCCC----ceeeeeeccc-c----cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCc---EEEEEECCE
Confidence            65544    3333211111 1    123333   5889998765678999999765544443322221   367788999


Q ss_pred             EEEEeCCCCeEEEEeCCCCc
Q 016552          298 LYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       298 ly~~~~~~~~l~~yd~~~~~  317 (387)
                      ||+.+...+.|+..|..+.+
T Consensus       221 lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         221 LYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTE
T ss_pred             EEEEECCCCEEEEEECCCCc
Confidence            99999878899999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.47  E-value=7.7  Score=35.67  Aligned_cols=115  Identities=13%  Similarity=0.140  Sum_probs=67.7

Q ss_pred             EEEECCEEEEEeeeCCeEEEEECCCC--ceeecccc---ccc--CCCCcEEEEeCCeEEEEeCCCCeEEEEeCCCC--ce
Q 016552          248 AVGWKGKLCLVNVKGAEGAVYDVVAN--TWDDMREG---MVR--GWRGPVAAMDEEVLYGIDENSCTLSRYDEVMD--DW  318 (387)
Q Consensus       248 ~~~~~g~lyv~gg~~~~i~~yD~~~~--~W~~~~~~---~~~--~~~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~--~W  318 (387)
                      -++.||+||+....+ .++++|.+++  .|+.-...   ...  ......+++.++++|+-. .++.++++|.+++  .|
T Consensus        64 Piv~~g~vy~~t~~~-~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t-~~~~l~alda~tG~~~W  141 (582)
T d1flga_          64 AIVSDGVIYVTASYS-RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-LDASVVALNKNTGKVVW  141 (582)
T ss_dssp             CEEETTEEEEEETTT-EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-TTTEEEEEESSSCCEEE
T ss_pred             CEEECCEEEEeCCCC-eEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEec-CCCeEEEecccccceee
Confidence            467899999887654 7999999988  48743221   111  111234567788888754 4678999999987  57


Q ss_pred             eEccc-ccc---ccCceEEEE--eCCeEEEEecC-------CCeEEEEeccCCCCCCceEE
Q 016552          319 KEVVK-SDL---LKGARHAAA--GGGRVCAVCEN-------GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       319 ~~v~~-~~~---~~~~~~~~~--~~g~i~v~gg~-------~~~i~~~d~~~~~~~~~W~~  366 (387)
                      +.-.. ...   ......++.  ..+.++++.+.       ...+..+|..++  ...|+.
T Consensus       142 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG--~~~W~~  200 (582)
T d1flga_         142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG--EEIWMR  200 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC--CEEEEE
T ss_pred             eecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCC--cEEEEE
Confidence            65332 111   111221221  11344444432       246888888854  346876

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.31  E-value=5.4  Score=32.23  Aligned_cols=196  Identities=10%  Similarity=-0.018  Sum_probs=94.1

Q ss_pred             CCEEEEEecccCCCCCCCCccEEEeccCCceeeCCCCCCCC-cceeEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCC
Q 016552          146 SGKLILLAATTHNFNPALTRPLIFDPICRTWTFGPELVTPR-RWCAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNG  224 (387)
Q Consensus       146 ~~~l~v~GG~~~~~~~~~~~~~vyd~~t~~W~~l~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  224 (387)
                      ++.+++.|+.++       .+.++|..+............. ........++..++.++.+.        .+.++|..+.
T Consensus        68 ~~~~l~sg~~d~-------~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~wd~~~~  132 (342)
T d1yfqa_          68 TDLQIYVGTVQG-------EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG--------LIEVIDPRNY  132 (342)
T ss_dssp             SSEEEEEEETTS-------CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS--------EEEEECHHHH
T ss_pred             CCCEEEEccccc-------ceeeeeccccccccccccccccccccccccccccccccccccc--------ccceeecccc
Confidence            355666666432       5788888776555433322222 23333344555666665543        5667776433


Q ss_pred             ccccCeEEcCCCCCCCcc-ccceEEEEECCEEEEEeeeCCeEEEEECCCCceeecccc-cccCCCCcEEEE--eCCeEEE
Q 016552          225 EKNSRWEKTGELKDGRFS-REAIDAVGWKGKLCLVNVKGAEGAVYDVVANTWDDMREG-MVRGWRGPVAAM--DEEVLYG  300 (387)
Q Consensus       225 ~~~~~W~~~~~~p~~~~~-~~~~~~~~~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~-~~~~~~~~~~~~--~~~~ly~  300 (387)
                      ...  ............. .........++...+.+..+..+..||..+..-...... ............  .++..++
T Consensus       133 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         133 GDG--VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             TTB--CEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             ccc--eeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEE
Confidence            311  2222222211111 111223445566666666667889999876542221110 111111111111  2345556


Q ss_pred             EeCCCCeEEEEeCCCC--ceeEcccc-----------ccccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          301 IDENSCTLSRYDEVMD--DWKEVVKS-----------DLLKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       301 ~~~~~~~l~~yd~~~~--~W~~v~~~-----------~~~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                      .+..++.+..|+....  .+......           ........++  .-++++++.|+..+.|.+||..++
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence            6656677776665432  11111100           0011112222  236778888888888999999865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.11  E-value=5.4  Score=32.00  Aligned_cols=129  Identities=12%  Similarity=0.082  Sum_probs=69.3

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEEECCEEEEEeeeC-CeEEEEECCCCceeecccccccCCCC--cEE
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVGWKGKLCLVNVKG-AEGAVYDVVANTWDDMREGMVRGWRG--PVA  291 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~g~lyv~gg~~-~~i~~yD~~~~~W~~~~~~~~~~~~~--~~~  291 (387)
                      .+..++..+..    +...-....+      ..+...++..+++++.. +.+..||.....-.  .. ......+  .++
T Consensus       102 ~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~--~~-~~~~~~~~v~~~  168 (287)
T d1pgua2         102 DLLILQSFTGD----IIKSVRLNSP------GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS--FD-LKTPLRAKPSYI  168 (287)
T ss_dssp             EEEEEETTTCC----EEEEEECSSC------EEEEEECSSEEEEEETTTSCEEEEETTEEEEE--EE-CSSCCSSCEEEE
T ss_pred             cceeeecccee----eeeeccccce------eeeeeccCcceeeeccccceeeeeecccccee--ee-eeeccCCceeEE
Confidence            45677777777    5544322211      34555677666666654 56888887543221  11 1111112  223


Q ss_pred             EE-eCCeEEEEeCCCCeEEEEeCCCCceeEccccccccC------------ceEEEEeCCeEEEEecCCCeEEEEeccC
Q 016552          292 AM-DEEVLYGIDENSCTLSRYDEVMDDWKEVVKSDLLKG------------ARHAAAGGGRVCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       292 ~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~v~~~~~~~~------------~~~~~~~~g~i~v~gg~~~~i~~~d~~~  357 (387)
                      +. .++..++.+..++.+..||..+..-... .......            .......++.+++.|+....+.+||+.+
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             EeccCccccccccccccccceeecccccccc-cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            32 2556666776788999999876643221 1111111            1112234566777777778899999874

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=4.8  Score=31.31  Aligned_cols=61  Identities=20%  Similarity=0.080  Sum_probs=36.9

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCceeec-cccccc---CC--CCcEEEEeCCeEEEEeCCCCeEEEEeCCCC
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWDDM-REGMVR---GW--RGPVAAMDEEVLYGIDENSCTLSRYDEVMD  316 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~~~-~~~~~~---~~--~~~~~~~~~~~ly~~~~~~~~l~~yd~~~~  316 (387)
                      +|++|++-|  ...+.||..+++=..- +..+..   +.  ...++...++.+|++-+  ..-+.||..+.
T Consensus       109 ~g~~Y~FkG--~~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~idaAf~~~~~~Yffkg--~~y~r~~~~~~  175 (195)
T d1itva_         109 RGKMLLFSG--RRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREKAYFCQD--RFYWRVSSRSE  175 (195)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEECGGGCEEHHHHSTTSCSSCSEEEEETTEEEEEET--TEEEEEECCTT
T ss_pred             CCeEEEEec--cEEEEEeCCcccccCCCccchhhhcCCCCCCCcEEEEeCCcEEEEEC--CEEEEEcCCce
Confidence            689999966  4689999887642211 100111   11  13455566788999953  46788886543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.84  E-value=6.8  Score=31.81  Aligned_cols=54  Identities=17%  Similarity=0.109  Sum_probs=31.5

Q ss_pred             CccEEEeccCCceee-CCCCCCCCc-ceeEEEeCC-EEEEEecCCCCCCCCCcceEEEEECCCCc
Q 016552          164 TRPLIFDPICRTWTF-GPELVTPRR-WCAAGCSRG-AVYVASGIGSQFSSDVAKSVEKWDLMNGE  225 (387)
Q Consensus       164 ~~~~vyd~~t~~W~~-l~~~p~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  225 (387)
                      +.+.++|..+.+-.. ++....... ...+..-+| .+||.|+.+.        .+.+||..+++
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~--------~v~v~D~~t~~   67 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE--------SLVKIDLVTGE   67 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT--------EEEEEETTTCC
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCC--------eEEEEECCCCc
Confidence            468889998876433 321111121 222222344 5788765433        78999999988

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.23  E-value=9.6  Score=32.92  Aligned_cols=93  Identities=12%  Similarity=-0.008  Sum_probs=52.0

Q ss_pred             eEEEEECCCCccccCeEEcCCCCCCCccccceEEEE--ECCEEEEEeeeCCeEEEEECCCCceeecccccccCCCCcEEE
Q 016552          215 SVEKWDLMNGEKNSRWEKTGELKDGRFSREAIDAVG--WKGKLCLVNVKGAEGAVYDVVANTWDDMREGMVRGWRGPVAA  292 (387)
Q Consensus       215 ~v~~yd~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~--~~g~lyv~gg~~~~i~~yD~~~~~W~~~~~~~~~~~~~~~~~  292 (387)
                      .+.++|..+.+    =.  ..++.+..    ..++.  -||+..++++.+..+.++|..+.+-..+.. ...+......+
T Consensus        43 ~v~vwD~~t~~----~~--~~l~~g~~----~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~-i~~~~~~~~~~  111 (426)
T d1hzua2          43 QIALVDGDSKK----IV--KVIDTGYA----VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTCS----EE--EEEECCSS----EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EECCSEEEEEE
T ss_pred             EEEEEECCCCc----EE--EEEeCCCC----eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE-EeCCCCCcceE
Confidence            78889998887    22  22222211    22233  377755555656689999999886443322 11111111111


Q ss_pred             E------eCCeEEEEeCCCCeEEEEeCCCCce
Q 016552          293 M------DEEVLYGIDENSCTLSRYDEVMDDW  318 (387)
Q Consensus       293 ~------~~~~ly~~~~~~~~l~~yd~~~~~W  318 (387)
                      .      .|..||+.....+.+..||.++..=
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            1      2445666655567899999888643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.70  E-value=4.9  Score=37.25  Aligned_cols=121  Identities=12%  Similarity=0.148  Sum_probs=63.6

Q ss_pred             eeEEEeCCEEEEEecCCCCCCCCCcceEEEEEC-CCCccccCeEEcCCCCCCC---cccc--ceEEEEECC------EEE
Q 016552          189 CAAGCSRGAVYVASGIGSQFSSDVAKSVEKWDL-MNGEKNSRWEKTGELKDGR---FSRE--AIDAVGWKG------KLC  256 (387)
Q Consensus       189 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~-~~~~~~~~W~~~~~~p~~~---~~~~--~~~~~~~~g------~ly  256 (387)
                      ..-.+++++||+......        .+.++|. .|++..  |+.-+..+...   ....  .-..+..++      +||
T Consensus        56 ~tPiv~~g~ly~~t~~~~--------~v~a~d~~~tG~~~--W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~  125 (596)
T d1w6sa_          56 GAPLVVDGKMYIHTSFPN--------NTFALGLDDPGTIL--WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALIL  125 (596)
T ss_dssp             SCCEEETTEEEEECSTTT--------CEEEEETTCTTSEE--EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEE
T ss_pred             eCCEEECCEEEEeeCCCC--------cEEEEeCCCCCCEE--EEecCCCCcccccccccccccceeEEecCCCCCceEEE
Confidence            345578999999754322        4566665 455544  66543322110   0000  011233333      254


Q ss_pred             EEeeeCCeEEEEECCCC--ceeecccccccC-CCCcEEEEeCCeEEEEeC-----CCCeEEEEeCCCC--ceeE
Q 016552          257 LVNVKGAEGAVYDVVAN--TWDDMREGMVRG-WRGPVAAMDEEVLYGIDE-----NSCTLSRYDEVMD--DWKE  320 (387)
Q Consensus       257 v~gg~~~~i~~yD~~~~--~W~~~~~~~~~~-~~~~~~~~~~~~ly~~~~-----~~~~l~~yd~~~~--~W~~  320 (387)
                      +. ..+..+.++|.+++  .|+.-....... ....+.++.++++|+-..     ..|.|.+||.+++  .|+-
T Consensus       126 ~~-t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         126 KT-QLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             EE-CTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             EE-eCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            43 33357889999888  476532111111 122334566778776432     2378999999987  4763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.53  E-value=14  Score=33.69  Aligned_cols=77  Identities=18%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             eEEEeCCEEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCCcc---ccceEEEEECCEEEEEeeeCCeEE
Q 016552          190 AAGCSRGAVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGRFS---REAIDAVGWKGKLCLVNVKGAEGA  266 (387)
Q Consensus       190 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~~~---~~~~~~~~~~g~lyv~gg~~~~i~  266 (387)
                      ...+.++.||+....         ..+.++|..|++..  |+.-...+.....   ...-..+..++++|+... +..+.
T Consensus        63 tPiv~~g~vy~~t~~---------~~v~AlDa~TG~~l--W~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-~~~l~  130 (582)
T d1flga_          63 QAIVSDGVIYVTASY---------SRLFALDAKTGKRL--WTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVV  130 (582)
T ss_dssp             CCEEETTEEEEEETT---------TEEEEEESSSCCEE--EEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEE
T ss_pred             CCEEECCEEEEeCCC---------CeEEEEeCCCCCeE--EEEcCCCCCccccccccccCCceEeCCceEEecC-CCeEE
Confidence            456789999997532         36788999999877  8754433322111   011124567888887543 35799


Q ss_pred             EEECCCC--ceeec
Q 016552          267 VYDVVAN--TWDDM  278 (387)
Q Consensus       267 ~yD~~~~--~W~~~  278 (387)
                      ++|.+++  .|+..
T Consensus       131 alda~tG~~~W~~~  144 (582)
T d1flga_         131 ALNKNTGKVVWKKK  144 (582)
T ss_dssp             EEESSSCCEEEEEE
T ss_pred             Eecccccceeeeec
Confidence            9999988  68654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.22  E-value=11  Score=31.70  Aligned_cols=64  Identities=9%  Similarity=-0.026  Sum_probs=39.0

Q ss_pred             EeCCeEEEEeCC--------CCeEEEEeCCCCceeEccccccccCce-EEEEeCCe--EEEEecCCCeEEEEeccCC
Q 016552          293 MDEEVLYGIDEN--------SCTLSRYDEVMDDWKEVVKSDLLKGAR-HAAAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       293 ~~~~~ly~~~~~--------~~~l~~yd~~~~~W~~v~~~~~~~~~~-~~~~~~g~--i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..++.+|+....        ...++++|.++++  .+...+...... ..+.-+|+  +|+.+...+.+.+||..+.
T Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             CCCCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            346677776421        1358899998774  444333222222 23344665  6777777789999999876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.54  E-value=7.3  Score=36.02  Aligned_cols=117  Identities=11%  Similarity=0.026  Sum_probs=65.8

Q ss_pred             EEEECCEEEEEeeeCCeEEEEEC-CCC--ceeeccccccc----C---CCCcEEEEeCCe-----EEEEeCCCCeEEEEe
Q 016552          248 AVGWKGKLCLVNVKGAEGAVYDV-VAN--TWDDMREGMVR----G---WRGPVAAMDEEV-----LYGIDENSCTLSRYD  312 (387)
Q Consensus       248 ~~~~~g~lyv~gg~~~~i~~yD~-~~~--~W~~~~~~~~~----~---~~~~~~~~~~~~-----ly~~~~~~~~l~~yd  312 (387)
                      -+++||.||+.+...+.+.++|. +++  .|+.-+.....    .   .....++...+.     +++++..++.|++.|
T Consensus        58 Piv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Ald  137 (596)
T d1w6sa_          58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN  137 (596)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred             CEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeec
Confidence            45779999998765557888886 455  58744321111    0   011223333221     233444467899999


Q ss_pred             CCCCc--eeEccccc--cccCceEEEEeCCeEEEEecC-----CCeEEEEeccCCCCCCceEE
Q 016552          313 EVMDD--WKEVVKSD--LLKGARHAAAGGGRVCAVCEN-----GGGIVVVDVKAAAAPTIFVV  366 (387)
Q Consensus       313 ~~~~~--W~~v~~~~--~~~~~~~~~~~~g~i~v~gg~-----~~~i~~~d~~~~~~~~~W~~  366 (387)
                      .++.+  |+.-...+  .......-..++|+|+|-...     ...|..||..++  ...|+.
T Consensus       138 a~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG--~~~W~~  198 (596)
T d1w6sa_         138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG--EQVWRA  198 (596)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC--CEEEEE
T ss_pred             cccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCC--cEEEEe
Confidence            88873  65422111  112223345678887764322     367899999865  357885

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=3.7  Score=33.66  Aligned_cols=103  Identities=14%  Similarity=0.090  Sum_probs=55.6

Q ss_pred             EEEEEeeeCCeEEEEECCCC-ceeecccccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCceeEcc--cccccc
Q 016552          254 KLCLVNVKGAEGAVYDVVAN-TWDDMREGMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYDEVMDDWKEVV--KSDLLK  328 (387)
Q Consensus       254 ~lyv~gg~~~~i~~yD~~~~-~W~~~~~~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~~~~W~~v~--~~~~~~  328 (387)
                      .+||.+..+..|.+||+.+. ..+.+.. ...+-....+++  .|..||+.+..++.+.+|+.+.+.+....  ..+...
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            36788777778888887644 3443331 111111122332  34468887766788999998877665422  222222


Q ss_pred             Cc-eEEEEeCCe-EEEEecCCCeEEEEeccC
Q 016552          329 GA-RHAAAGGGR-VCAVCENGGGIVVVDVKA  357 (387)
Q Consensus       329 ~~-~~~~~~~g~-i~v~gg~~~~i~~~d~~~  357 (387)
                      .. +..+.-+|+ |++.+.++..+.+++...
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            22 333444555 444444556666666553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=82.64  E-value=12  Score=31.09  Aligned_cols=53  Identities=11%  Similarity=0.124  Sum_probs=31.8

Q ss_pred             CCCeEEEEeCCCCceeEccccccccCceE-EEEeCCe--EEEEecCCCeEEEEeccCC
Q 016552          304 NSCTLSRYDEVMDDWKEVVKSDLLKGARH-AAAGGGR--VCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       304 ~~~~l~~yd~~~~~W~~v~~~~~~~~~~~-~~~~~g~--i~v~gg~~~~i~~~d~~~~  358 (387)
                      ..+.+..||..+++  .+...+....... .+.-+|+  +|+.++..+.+.+||..+.
T Consensus       296 ~~~~v~~~d~~t~~--~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         296 AAKEVTSVTGLVGQ--TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCeEEEEECCCCc--EEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            34568889988773  2222222222222 3344665  5566667788999999976

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.14  E-value=15  Score=31.10  Aligned_cols=112  Identities=10%  Similarity=-0.053  Sum_probs=60.3

Q ss_pred             EEEEEecCCCCCCCCCcceEEEEECCCCccccCeEEcCCCCCCC-ccccceEEEEE--CCEEEEEeeeC---CeEEEEEC
Q 016552          197 AVYVASGIGSQFSSDVAKSVEKWDLMNGEKNSRWEKTGELKDGR-FSREAIDAVGW--KGKLCLVNVKG---AEGAVYDV  270 (387)
Q Consensus       197 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~~~~~W~~~~~~p~~~-~~~~~~~~~~~--~g~lyv~gg~~---~~i~~yD~  270 (387)
                      .+++.|+.+.        .+.+||..+.+    ....-...... .......++.+  +|++.+.++.+   ..+.+||+
T Consensus       196 g~lasgs~Dg--------~i~iwd~~~~~----~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         196 GLIATGFNNG--------TVQISELSTLR----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             SEEEEECTTS--------EEEEEETTTTE----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CEEEEEeCCC--------cEEEEeecccc----cccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence            3445555543        78999998877    33221111100 00011223332  77777776654   24788999


Q ss_pred             CCCceeeccc---------ccccCCCC--cEEEE-eCCeEEEEeCCCCeEEEEeCCCCceeE
Q 016552          271 VANTWDDMRE---------GMVRGWRG--PVAAM-DEEVLYGIDENSCTLSRYDEVMDDWKE  320 (387)
Q Consensus       271 ~~~~W~~~~~---------~~~~~~~~--~~~~~-~~~~ly~~~~~~~~l~~yd~~~~~W~~  320 (387)
                      ++++....-.         ....+...  .++++ .++++++-++.++.|.+||.++++...
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            8875432110         00112111  12333 266777777778999999999986554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.58  E-value=4.4  Score=34.70  Aligned_cols=104  Identities=11%  Similarity=0.023  Sum_probs=58.6

Q ss_pred             EEEEeeeCCeEEEEECCCCceeeccc--ccccCCCCc--EEEE-eCCeEEEEeCCCC---eEEEEeCCCCceeEccccc-
Q 016552          255 LCLVNVKGAEGAVYDVVANTWDDMRE--GMVRGWRGP--VAAM-DEEVLYGIDENSC---TLSRYDEVMDDWKEVVKSD-  325 (387)
Q Consensus       255 lyv~gg~~~~i~~yD~~~~~W~~~~~--~~~~~~~~~--~~~~-~~~~ly~~~~~~~---~l~~yd~~~~~W~~v~~~~-  325 (387)
                      +.+.++.+..+.+||+.+++....-.  ....+...+  ++++ .++++++.++.++   .+..||.++......-..+ 
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            44455555789999999876432111  011122222  2333 2566666665433   4888999887654422111 


Q ss_pred             -------c---ccCceEEE--EeCCeEEEEecCCCeEEEEeccCC
Q 016552          326 -------L---LKGARHAA--AGGGRVCAVCENGGGIVVVDVKAA  358 (387)
Q Consensus       326 -------~---~~~~~~~~--~~~g~i~v~gg~~~~i~~~d~~~~  358 (387)
                             .   .......+  ..++++++.|+....|.+||+.++
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence                   0   11122222  347888888888899999999865

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.03  E-value=11  Score=29.14  Aligned_cols=60  Identities=8%  Similarity=-0.028  Sum_probs=36.3

Q ss_pred             CCEEEEEeeeCCeEEEEECCCCcee-----eccc---ccccCCCCcEEEE--eCCeEEEEeCCCCeEEEEeCCCCc
Q 016552          252 KGKLCLVNVKGAEGAVYDVVANTWD-----DMRE---GMVRGWRGPVAAM--DEEVLYGIDENSCTLSRYDEVMDD  317 (387)
Q Consensus       252 ~g~lyv~gg~~~~i~~yD~~~~~W~-----~~~~---~~~~~~~~~~~~~--~~~~ly~~~~~~~~l~~yd~~~~~  317 (387)
                      +|++|++.|  ...+.||..+++=.     .+..   ++|..  ..++..  .+|++|++-+  ...+.||..+..
T Consensus       117 ~g~~YfFkg--~~y~ryd~~~~~vd~~yPk~I~~~w~gvp~~--idAAf~~~~~g~~Yff~g--~~y~r~d~~~~~  186 (200)
T d1gena_         117 NKKTYIFAG--DKFWRYNEVKKKMDPGFPKLIADAWNAIPDN--LDAVVDLQGGGHSYFFKG--AYYLKLENQSLK  186 (200)
T ss_dssp             TTEEEEEET--TEEEEEETTTTEECSSCCEEHHHHSSSCCSS--CSEEEECTTTCEEEEEET--TEEEEEETTEEE
T ss_pred             CCeEEEEeC--cEEEEeccccceeccCcceehhhccCCCCCC--ccEEEEecCCCEEEEEEC--CEEEEEECCceE
Confidence            689999977  46899999876421     1111   11211  223333  2688999954  477888876543