Citrus Sinensis ID: 016573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MESSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLIPW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEEcccccEEccccccccEEEEEEEEccccccccccccHHHHHccccccccccccEEEccEEEEEcccEEEccccEEEccccccccccEEEEEEEcccccccccEEEEEEccEEEEEcccccccccccccccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEccccEEEEEEEccEEEEcccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEccccEEEcccccccEEEEEEEEcccccccccccccHHHHHHccEccccccccEEEEEEEEEEEccEEEcccEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEccccccEEEEEccEEEEEEEEEccEEEcHHHccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
messrnkkrgyeqsvedeadgmpgskksklpALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKfghaklaarsppprihgpgeknlqlhyktrmpphlftggkvegdqgAAIHVVLIdmntgdvvqtgpessaKLNVVVLEgdfneeeddnwtkehfeshevkeregkrpiltgDLLVTLKEgfgtlgdltftdnsswirsrkfrlglkvspgycdgirvreaktegfavkdhrgelykkhyppalhdeVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYadgtqntgvVFNNIYELrgliddgqfvsleslthsqktlpdsglhehVFAFRYRLIPW
Flexible Loop (DISEMBL)
messrnkkrgyeqsvedeadgmpgskkskLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKfghaklaarsppprihgpgEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDfneeeddnwtkehfeshevkeregkrpiltgDLLVTLKEGFgtlgdltftdnsswirsrkfrlglkvspgycdgirvreaktegfavkdhrgelykkhyppalhdevWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSqktlpdsglhehVFAFRYRLIPW
Low Complexity Region (SEG)
MESSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLIPW
Disordered region (IsUnstruct)
********************************LASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGH**********************HYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQT*****AKLNVVVLEGD**************************PILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLI**
Disordered Region (DISOPRED)
***********************************VIVEALKM*********************V*RAL*************************QLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVK*****RPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLIPW
Disordered Region (DISEMBL)
**************************KSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHF*********GKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLIPW
Disordered Region (DISPRO)
****************************KLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGH****************EKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLIPW
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRYRLIPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
224091673	593	predicted protein [Populus trichocarpa]	0.958	0.625	0.828	0.0
297735897	381	unnamed protein product [Vitis vinifera]	0.956	0.971	0.831	0.0
359484785	618	PREDICTED: uncharacterized protein LOC10	0.956	0.598	0.831	0.0
224142423	592	predicted protein [Populus trichocarpa]	0.958	0.626	0.818	1e-179
343157316	610	calmodulin-binding protein [Populus euph	0.958	0.608	0.818	1e-179
356556598	613	PREDICTED: uncharacterized protein LOC10	0.958	0.605	0.795	1e-174
356530641	613	PREDICTED: uncharacterized protein LOC10	0.958	0.605	0.789	1e-173
42570907	599	Calmodulin-binding protein [Arabidopsis	0.935	0.604	0.777	1e-164
297821723	599	calmodulin-binding protein [Arabidopsis	0.935	0.604	0.771	1e-162
22329041	562	Calmodulin-binding protein [Arabidopsis	0.943	0.649	0.712	1e-151

>gi|224091673|ref|XP_002309326.1| predicted protein [Populus trichocarpa] gi|222855302|gb|EEE92849.1| predicted protein [Populus trichocarpa]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/374 (82%), Positives = 341/374 (91%), Gaps = 3/374 (0%)

Query: 1   MESSRNK---KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLL 57
           MESSR +   KRGY+QSV+DEAD +P SKK+KLPALASVIVEALK+DSLQRLCSSLEPL 
Sbjct: 1   MESSRGRRVEKRGYDQSVDDEADNLPESKKAKLPALASVIVEALKVDSLQRLCSSLEPLF 60

Query: 58  RRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQG 117
           RRIVSEEVERALT+ G AKLA RS PP++ GP   NLQLH++TRMPPHLFTGGKVEG+QG
Sbjct: 61  RRIVSEEVERALTRLGPAKLAGRSSPPKLPGPEGNNLQLHFRTRMPPHLFTGGKVEGEQG 120

Query: 118 AAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKR 177
           AAIHVVL+D +TG VVQTGPES+AKLNVVVLEGDFNEE D++W  EHFESHEVKEREGKR
Sbjct: 121 AAIHVVLLDASTGTVVQTGPESAAKLNVVVLEGDFNEEADEDWAMEHFESHEVKEREGKR 180

Query: 178 PILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFA 237
           P+LTGDL VTLKEG GTLG++TFTDNSSWIRSRKFRLG+KV+PGYC+G RVREAKTE FA
Sbjct: 181 PLLTGDLQVTLKEGVGTLGEITFTDNSSWIRSRKFRLGVKVAPGYCEGFRVREAKTEAFA 240

Query: 238 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLR 297
           VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKL+KA I TVEDFLR+L+RDPQKLR
Sbjct: 241 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLVKAYITTVEDFLRVLIRDPQKLR 300

Query: 298 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVS 357
           +ILGSGMSN+MWENTVEHAKTCVLGGKLYVYYADG  +TGVVFNNIYELRGLI DGQF+S
Sbjct: 301 HILGSGMSNKMWENTVEHAKTCVLGGKLYVYYADGNHSTGVVFNNIYELRGLISDGQFLS 360

Query: 358 LESLTHSQKTLPDS 371
           LESL H+QK   DS
Sbjct: 361 LESLNHNQKVSVDS 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735897|emb|CBI18673.3| unnamed protein product [Vitis vinifera]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/374 (83%), Positives = 338/374 (90%), Gaps = 4/374 (1%)

Query: 1   MESSRNK---KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLL 57
           ME SR++   KRGYEQSVED+ D +PGSKK KLPALASVIVEALK+DSLQRLCSSLEPL 
Sbjct: 1   MEGSRSRRVDKRGYEQSVEDQ-DDLPGSKKPKLPALASVIVEALKVDSLQRLCSSLEPLF 59

Query: 58  RRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQG 117
           RRIVSEEVERALT+ GHAKL  RS PPRI  PG KNLQLH+KTRMPPHLFTGGKVEG+QG
Sbjct: 60  RRIVSEEVERALTRLGHAKLVGRSSPPRIQAPGGKNLQLHFKTRMPPHLFTGGKVEGEQG 119

Query: 118 AAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKR 177
           A+I VVL+D++T  VVQTGPES+AKLNVVVLEGDFNEE DD+WTKEHFESHEVKEREGKR
Sbjct: 120 ASILVVLLDVDTSSVVQTGPESAAKLNVVVLEGDFNEESDDDWTKEHFESHEVKEREGKR 179

Query: 178 PILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFA 237
           P+LTGDL VTLKEG GTLGDLTFTDNSSWIRSRKFRLG+K++PGYC+ + +REAKTE FA
Sbjct: 180 PLLTGDLQVTLKEGIGTLGDLTFTDNSSWIRSRKFRLGVKIAPGYCEDVHIREAKTEAFA 239

Query: 238 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLR 297
           VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKL+KA IVTVEDFLR LVRDPQKLR
Sbjct: 240 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLVKAAIVTVEDFLRFLVRDPQKLR 299

Query: 298 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVS 357
           NILGSGMSNRMWENTVEHAKTCVLGGK+YVY+ D T +TG VFNNIYELRGLI D QF+ 
Sbjct: 300 NILGSGMSNRMWENTVEHAKTCVLGGKVYVYFTDETHSTGAVFNNIYELRGLIADEQFLP 359

Query: 358 LESLTHSQKTLPDS 371
           LESLTH+QK   DS
Sbjct: 360 LESLTHNQKISTDS 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484785|ref|XP_003633161.1| PREDICTED: uncharacterized protein LOC100255894 [Vitis vinifera]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/374 (83%), Positives = 338/374 (90%), Gaps = 4/374 (1%)

Query: 1   MESSRNK---KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLL 57
           ME SR++   KRGYEQSVED+ D +PGSKK KLPALASVIVEALK+DSLQRLCSSLEPL 
Sbjct: 1   MEGSRSRRVDKRGYEQSVEDQ-DDLPGSKKPKLPALASVIVEALKVDSLQRLCSSLEPLF 59

Query: 58  RRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQG 117
           RRIVSEEVERALT+ GHAKL  RS PPRI  PG KNLQLH+KTRMPPHLFTGGKVEG+QG
Sbjct: 60  RRIVSEEVERALTRLGHAKLVGRSSPPRIQAPGGKNLQLHFKTRMPPHLFTGGKVEGEQG 119

Query: 118 AAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKR 177
           A+I VVL+D++T  VVQTGPES+AKLNVVVLEGDFNEE DD+WTKEHFESHEVKEREGKR
Sbjct: 120 ASILVVLLDVDTSSVVQTGPESAAKLNVVVLEGDFNEESDDDWTKEHFESHEVKEREGKR 179

Query: 178 PILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFA 237
           P+LTGDL VTLKEG GTLGDLTFTDNSSWIRSRKFRLG+K++PGYC+ + +REAKTE FA
Sbjct: 180 PLLTGDLQVTLKEGIGTLGDLTFTDNSSWIRSRKFRLGVKIAPGYCEDVHIREAKTEAFA 239

Query: 238 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLR 297
           VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKL+KA IVTVEDFLR LVRDPQKLR
Sbjct: 240 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLVKAAIVTVEDFLRFLVRDPQKLR 299

Query: 298 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVS 357
           NILGSGMSNRMWENTVEHAKTCVLGGK+YVY+ D T +TG VFNNIYELRGLI D QF+ 
Sbjct: 300 NILGSGMSNRMWENTVEHAKTCVLGGKVYVYFTDETHSTGAVFNNIYELRGLIADEQFLP 359

Query: 358 LESLTHSQKTLPDS 371
           LESLTH+QK   DS
Sbjct: 360 LESLTHNQKISTDS 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142423|ref|XP_002324557.1| predicted protein [Populus trichocarpa] gi|222865991|gb|EEF03122.1| predicted protein [Populus trichocarpa]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/374 (81%), Positives = 335/374 (89%), Gaps = 3/374 (0%)

Query: 1   MESSRNK---KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLL 57
           MESSR +   KRGYEQ V+DEAD +P SKK+KLPALASVIVEALK+DSLQRLCSSLEPL 
Sbjct: 1   MESSRGRRVEKRGYEQGVDDEADNLPESKKAKLPALASVIVEALKVDSLQRLCSSLEPLF 60

Query: 58  RRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQG 117
           RRIVSEEVERALT+ G AKLA  S PP++ GP   +LQLH++TRMPPHLFTGGKVEG+QG
Sbjct: 61  RRIVSEEVERALTRLGPAKLAGGSSPPKLPGPNGNDLQLHFRTRMPPHLFTGGKVEGEQG 120

Query: 118 AAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKR 177
           A IHVVL+D +TG V+QTGPES+AKLNVVVLEGDFN+E D+ WT EHFESHEVKEREGKR
Sbjct: 121 ATIHVVLLDASTGTVMQTGPESAAKLNVVVLEGDFNDEADEGWTAEHFESHEVKEREGKR 180

Query: 178 PILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFA 237
           P+LTGDL V+LKEG GTLGDLTFTDNSSWIRSRKFRLG+KVSPGYC+GIRVREAKTE FA
Sbjct: 181 PLLTGDLQVSLKEGVGTLGDLTFTDNSSWIRSRKFRLGVKVSPGYCEGIRVREAKTEAFA 240

Query: 238 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLR 297
           VKDHRGELYKKHYPPAL DEVWRLDRIAKDGALHKKL+ ADI TVEDFLR+L RD QKLR
Sbjct: 241 VKDHRGELYKKHYPPALQDEVWRLDRIAKDGALHKKLVMADITTVEDFLRVLFRDSQKLR 300

Query: 298 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVS 357
           NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYA GT +TGVVFNN+YE RGLI DGQF+S
Sbjct: 301 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYAAGTHSTGVVFNNVYEPRGLISDGQFLS 360

Query: 358 LESLTHSQKTLPDS 371
           L+SL H+QK   DS
Sbjct: 361 LDSLNHNQKISVDS 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343157316|gb|AEL95441.1| calmodulin-binding protein [Populus euphratica]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/374 (81%), Positives = 334/374 (89%), Gaps = 3/374 (0%)

Query: 1   MESSRNK---KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLL 57
           MESSR +   KRGYEQ V+DEAD +P SKK+KLPALASVIVEALK+DSLQRLCSSLEPL 
Sbjct: 1   MESSRGRRVEKRGYEQGVDDEADNLPESKKAKLPALASVIVEALKVDSLQRLCSSLEPLF 60

Query: 58  RRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQG 117
           RRIVSEEVERALT+ G AKLA  S PP++ GP   NLQLH++TRMPPHLFTGGKVEG+QG
Sbjct: 61  RRIVSEEVERALTRLGPAKLAGGSSPPKLAGPNGNNLQLHFRTRMPPHLFTGGKVEGEQG 120

Query: 118 AAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKR 177
           A IHVVL+D +TG V+QTGPES+AKLNVVVLEGDFN+E D+ WT EHFESHEVKEREGKR
Sbjct: 121 ATIHVVLLDASTGTVIQTGPESAAKLNVVVLEGDFNDEADEGWTAEHFESHEVKEREGKR 180

Query: 178 PILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFA 237
           P+LTGDL V+ KEG GTLGDLTFTDNSSWIRSRKFRLG+KVSPGYC+GIRVREAKTE FA
Sbjct: 181 PLLTGDLQVSPKEGVGTLGDLTFTDNSSWIRSRKFRLGVKVSPGYCEGIRVREAKTEAFA 240

Query: 238 VKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLR 297
           VKDHRGELYKKHYPPAL DEVWRLDRIAKDGALHKKL+ ADI TVEDFLR+L RD QKLR
Sbjct: 241 VKDHRGELYKKHYPPALQDEVWRLDRIAKDGALHKKLVMADITTVEDFLRVLFRDSQKLR 300

Query: 298 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVS 357
           NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYA GT +TGVVFNN+YE RGLI DGQF+S
Sbjct: 301 NILGSGMSNRMWENTVEHAKTCVLGGKLYVYYAAGTHSTGVVFNNVYEPRGLISDGQFLS 360

Query: 358 LESLTHSQKTLPDS 371
           L+SL H+QK   DS
Sbjct: 361 LDSLNHNQKVSVDS 374

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556598|ref|XP_003546611.1| PREDICTED: uncharacterized protein LOC100775528 [Glycine max]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/376 (79%), Positives = 330/376 (87%), Gaps = 5/376 (1%)

Query: 1   MESSRN---KKRGYE--QSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEP 55
           MESS+N   +KRGYE  +  +D    +  SKK KLP LASVIVEALK+DS+QRLCSSLEP
Sbjct: 1   MESSKNNRVEKRGYELVEEGDDAQHHLTQSKKPKLPGLASVIVEALKVDSMQRLCSSLEP 60

Query: 56  LLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGD 115
           LLR+IVSEEVERAL K GHAKL  RSPPPR+ GP  KNLQL ++TRMPPHLFTGGKVEG+
Sbjct: 61  LLRKIVSEEVERALAKLGHAKLTERSPPPRLEGPAAKNLQLQFRTRMPPHLFTGGKVEGE 120

Query: 116 QGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREG 175
           QG+AIHV+L+D NTG VVQ GPES AKLNVVVLEGDFNEE DD+WTKEHFESHEVKEREG
Sbjct: 121 QGSAIHVMLMDPNTGSVVQVGPESVAKLNVVVLEGDFNEEVDDDWTKEHFESHEVKEREG 180

Query: 176 KRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEG 235
           KRP+LTGDL V+LKEG GT GDLTFTDNSSWIRSRKFRLG+KV+PGYC+ IR+RE KTE 
Sbjct: 181 KRPLLTGDLQVSLKEGVGTFGDLTFTDNSSWIRSRKFRLGVKVAPGYCEEIRIREGKTEA 240

Query: 236 FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQK 295
           FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKL++A IVTVEDFLR+LVR+PQK
Sbjct: 241 FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLIQAKIVTVEDFLRLLVREPQK 300

Query: 296 LRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQF 355
           LR+ILGSGMSNRMWENTVEHAKTCVLGGKL+VYY D T + G+VFNNIYELRGLI DGQF
Sbjct: 301 LRSILGSGMSNRMWENTVEHAKTCVLGGKLFVYYTDETNSAGIVFNNIYELRGLISDGQF 360

Query: 356 VSLESLTHSQKTLPDS 371
            SLESL  +QK   DS
Sbjct: 361 FSLESLAPNQKMSVDS 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530641|ref|XP_003533889.1| PREDICTED: uncharacterized protein LOC100808358 [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/376 (78%), Positives = 332/376 (88%), Gaps = 5/376 (1%)

Query: 1   MESSRN---KKRGYE--QSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEP 55
           MESS+N   +KRGYE  +  +D    +  +KK KLP LASVIVEALK+DS+QRLCSSLEP
Sbjct: 1   MESSKNNRVEKRGYELVEEGDDVQHHLTQTKKPKLPVLASVIVEALKVDSMQRLCSSLEP 60

Query: 56  LLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGD 115
           LLR+IVSEEVERAL K GHAKLA RSPPPR+ GP  KNLQL ++TRMPPHLFTGGKVEG+
Sbjct: 61  LLRKIVSEEVERALAKLGHAKLAERSPPPRLEGPAAKNLQLQFRTRMPPHLFTGGKVEGE 120

Query: 116 QGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREG 175
           QG+AIHVVL+D NTG +VQ GPES AKLNVVVLEGDFNEE DD+WT+EHFESHEVKEREG
Sbjct: 121 QGSAIHVVLMDPNTGSIVQVGPESVAKLNVVVLEGDFNEEVDDDWTREHFESHEVKEREG 180

Query: 176 KRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEG 235
           KRP+LTGDL V+LKEG GT GDLTFTDNSSWIRSRKFRLG+KV+ GYC+ IR+RE KTE 
Sbjct: 181 KRPLLTGDLQVSLKEGVGTFGDLTFTDNSSWIRSRKFRLGVKVACGYCEEIRIREGKTET 240

Query: 236 FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQK 295
           FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKL++A IVTVEDFLR+LVR+PQK
Sbjct: 241 FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLIQAKIVTVEDFLRLLVREPQK 300

Query: 296 LRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQF 355
           LR+ILGSGMSNRMWENTVEHAKTCVLGGKL+VYY D T ++G++FNNIYELRGLI DGQF
Sbjct: 301 LRSILGSGMSNRMWENTVEHAKTCVLGGKLFVYYIDETNSSGIMFNNIYELRGLISDGQF 360

Query: 356 VSLESLTHSQKTLPDS 371
            SLESLT +QK   DS
Sbjct: 361 FSLESLTPNQKMSVDS 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570907|ref|NP_973527.1| Calmodulin-binding protein [Arabidopsis thaliana] gi|330252465|gb|AEC07559.1| Calmodulin-binding protein [Arabidopsis thaliana]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/364 (77%), Positives = 321/364 (88%), Gaps = 2/364 (0%)

Query: 8   KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVER 67
           KRGYE S ED  D +P SK+ K+PALASVIVEA+K+DSLQRLCSSLEPL RRIVSEEVER
Sbjct: 3   KRGYECSQED-TDKLPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVER 61

Query: 68  ALTKFGHAKLAARSP-PPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLID 126
           AL++ G+AKL +RSP P RI     +NLQLH++TRMPPHLFTGGKVEG++G+AIHVVLID
Sbjct: 62  ALSRLGNAKLTSRSPEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLID 121

Query: 127 MNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLV 186
            NTG+VVQTG ES++KLNVVVLEGDFN+E+D++WT+EHFES EVKEREGKRPILTGD  +
Sbjct: 122 ANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQI 181

Query: 187 TLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELY 246
            LKEG GTLG+LTFTDNSSWIRSRKFRLG+K + GY D   +REAKTE FAVKDHRGELY
Sbjct: 182 VLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELY 241

Query: 247 KKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSN 306
           KKHYPPA+HDEVWRLDRIAKDG LHKKL+KA+IVTVEDFLR+LV+DPQKLRN+LGSGMSN
Sbjct: 242 KKHYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSN 301

Query: 307 RMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQK 366
           RMWENTVEHAKTCVLGGKLYV+Y D T  TGVVFN+IYE RGLI +GQF+SLESL H QK
Sbjct: 302 RMWENTVEHAKTCVLGGKLYVFYTDQTHATGVVFNHIYEFRGLITNGQFLSLESLNHDQK 361

Query: 367 TLPD 370
              D
Sbjct: 362 ISAD 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821723|ref|XP_002878744.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata] gi|297324583|gb|EFH55003.1| calmodulin-binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 281/364 (77%), Positives = 319/364 (87%), Gaps = 2/364 (0%)

Query: 8   KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVER 67
           KRGYE S ED  D +P SK+ K+PALASVIVEA+K+DSLQRLCSSLEPL RRIVSEEVER
Sbjct: 3   KRGYECSQED-TDKLPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVER 61

Query: 68  ALTKFGHAKLAARSP-PPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLID 126
           AL++ G+AKL +RSP P RI     +NLQLH++TRMPPHLFTGGKVEG++G+AIHVVLID
Sbjct: 62  ALSRLGNAKLTSRSPEPKRIQDRDGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLID 121

Query: 127 MNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLV 186
            NTG+VVQTG ES++KLNVVVLEGDFN+E+D++WT+EHFES EVKEREGKRPILTGD  +
Sbjct: 122 ANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQI 181

Query: 187 TLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELY 246
            LKEG GTLG+LTFTDNSSWIRSRKFRLG+K + G  D   +REAKTE FAVKDHRGELY
Sbjct: 182 VLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPAAGCGDSFCIREAKTEPFAVKDHRGELY 241

Query: 247 KKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSN 306
           KKHYPPA+HDEVWRLDRIAKDG LHKKL+KA+IVTVEDFLR+LV+DPQKLRN+LGSGMSN
Sbjct: 242 KKHYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSN 301

Query: 307 RMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQK 366
           RMWENTVEHAKTCVLGGKLYV+Y D T  TGVVFN+IYE RGLI +G F+SLESL H QK
Sbjct: 302 RMWENTVEHAKTCVLGGKLYVFYTDQTHATGVVFNHIYEFRGLITNGHFLSLESLNHDQK 361

Query: 367 TLPD 370
              D
Sbjct: 362 ISAD 365

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329041|ref|NP_194829.2| Calmodulin-binding protein [Arabidopsis thaliana] gi|332660443|gb|AEE85843.1| Calmodulin-binding protein [Arabidopsis thaliana]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/372 (71%), Positives = 314/372 (84%), Gaps = 7/372 (1%)

Query: 1   MESSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRI 60
           ME+S N  RG+  + ++ AD +P SK+ KLPALASVIVEA+K+DSLQRLCSSLEPL RRI
Sbjct: 1   MENSMNN-RGHGHN-QEHADNLPESKRQKLPALASVIVEAVKVDSLQRLCSSLEPLFRRI 58

Query: 61  VSEEVERALTKFGHAKLAARSPPP-RIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAA 119
           VSEEVERA+++  ++K  +RS  P +I G   +NLQL ++TRMPPHLFTGGKVEG+QG+A
Sbjct: 59  VSEEVERAISRLENSKSTSRSTEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSA 118

Query: 120 IHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPI 179
           IHVVLID NTG+V+QTG ES  KLN+VVL+GDFN+E+D +WT+EHFES EVKEREGKRPI
Sbjct: 119 IHVVLIDANTGNVIQTGEESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPI 178

Query: 180 LTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVK 239
           LTGD  V +KEG GTLG LTFTDNSSWIRSRKFRLG+K + G+     +REAKTE FAVK
Sbjct: 179 LTGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKFRLGVKPATGF----HIREAKTEPFAVK 234

Query: 240 DHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNI 299
           DHRGELYKKHYPP LHDEVWRLD+IAKDGALHKKL+K++IVTVEDFL+IL++DPQKLR++
Sbjct: 235 DHRGELYKKHYPPVLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSL 294

Query: 300 LGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLE 359
           LGSGMSNRMW+NTVEHAKTCVLGGKLY YY D T  T VVFN+IYE +GLI +G F+S E
Sbjct: 295 LGSGMSNRMWDNTVEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEFQGLIANGHFLSSE 354

Query: 360 SLTHSQKTLPDS 371
           SL H QK   D+
Sbjct: 355 SLNHDQKISADT 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.935	0.604	0.777	1.1e-151
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.943	0.649	0.712	8.9e-141
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.925	0.595	0.682	1.5e-129
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.937	0.561	0.665	1.5e-129
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.943	0.586	0.665	2.8e-128
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.886	0.760	0.442	2.4e-69
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.777	0.534	0.420	1.5e-60

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 283/364 (77%), Positives = 321/364 (88%)

Query:     8 KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVER 67
             KRGYE S ED  D +P SK+ K+PALASVIVEA+K+DSLQRLCSSLEPL RRIVSEEVER
Sbjct:     3 KRGYECSQED-TDKLPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVER 61

Query:    68 ALTKFGHAKLAARSPPP-RIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLID 126
             AL++ G+AKL +RSP P RI     +NLQLH++TRMPPHLFTGGKVEG++G+AIHVVLID
Sbjct:    62 ALSRLGNAKLTSRSPEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLID 121

Query:   127 MNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLLV 186
              NTG+VVQTG ES++KLNVVVLEGDFN+E+D++WT+EHFES EVKEREGKRPILTGD  +
Sbjct:   122 ANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQI 181

Query:   187 TLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELY 246
              LKEG GTLG+LTFTDNSSWIRSRKFRLG+K + GY D   +REAKTE FAVKDHRGELY
Sbjct:   182 VLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELY 241

Query:   247 KKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSN 306
             KKHYPPA+HDEVWRLDRIAKDG LHKKL+KA+IVTVEDFLR+LV+DPQKLRN+LGSGMSN
Sbjct:   242 KKHYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSN 301

Query:   307 RMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQK 366
             RMWENTVEHAKTCVLGGKLYV+Y D T  TGVVFN+IYE RGLI +GQF+SLESL H QK
Sbjct:   302 RMWENTVEHAKTCVLGGKLYVFYTDQTHATGVVFNHIYEFRGLITNGQFLSLESLNHDQK 361

Query:   367 TLPD 370
                D
Sbjct:   362 ISAD 365

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 265/372 (71%), Positives = 314/372 (84%)

Query:     1 MESSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRI 60
             ME+S N  RG+  + ++ AD +P SK+ KLPALASVIVEA+K+DSLQRLCSSLEPL RRI
Sbjct:     1 MENSMNN-RGHGHN-QEHADNLPESKRQKLPALASVIVEAVKVDSLQRLCSSLEPLFRRI 58

Query:    61 VSEEVERALTKFGHAKLAARSPPP-RIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAA 119
             VSEEVERA+++  ++K  +RS  P +I G   +NLQL ++TRMPPHLFTGGKVEG+QG+A
Sbjct:    59 VSEEVERAISRLENSKSTSRSTEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSA 118

Query:   120 IHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPI 179
             IHVVLID NTG+V+QTG ES  KLN+VVL+GDFN+E+D +WT+EHFES EVKEREGKRPI
Sbjct:   119 IHVVLIDANTGNVIQTGEESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPI 178

Query:   180 LTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVK 239
             LTGD  V +KEG GTLG LTFTDNSSWIRSRKFRLG+K + G+     +REAKTE FAVK
Sbjct:   179 LTGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKFRLGVKPATGF----HIREAKTEPFAVK 234

Query:   240 DHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNI 299
             DHRGELYKKHYPP LHDEVWRLD+IAKDGALHKKL+K++IVTVEDFL+IL++DPQKLR++
Sbjct:   235 DHRGELYKKHYPPVLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSL 294

Query:   300 LGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLE 359
             LGSGMSNRMW+NTVEHAKTCVLGGKLY YY D T  T VVFN+IYE +GLI +G F+S E
Sbjct:   295 LGSGMSNRMWDNTVEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEFQGLIANGHFLSSE 354

Query:   360 SLTHSQKTLPDS 371
             SL H QK   D+
Sbjct:   355 SLNHDQKISADT 366

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 251/368 (68%), Positives = 295/368 (80%)

Query:     8 KRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVSEEVER 67
             KR +E++ +D+    P  K+   PALASVIVEALK+DSLQ+LCSSLEP+LRR+VSEEVER
Sbjct:     2 KRNFERNDDDK----PERKR---PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER 54

Query:    68 ALTKFGHAKLAARS--PPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLI 125
             AL K    +L   S   P RI GP  +NLQLH+K+R+   LFTGG+VEG+QGA IHVVLI
Sbjct:    55 ALAKLVPTRLTTSSVFSPKRIGGPDGRNLQLHFKSRLSLPLFTGGRVEGEQGATIHVVLI 114

Query:   126 DMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDLL 185
             D NTG  V  GPE+S KL VVVL GDFN E+D++WT+E FESH VKEREGKRP+LTGDL 
Sbjct:   115 DANTGRPVTVGPEASLKLEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKRPLLTGDLF 174

Query:   186 VTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGEL 245
             V LKEG GTLG++ FTDNSSWIRSRKFRLGL+V  GYCDGIR+REAKTE F+VKDHRGEL
Sbjct:   175 VVLKEGVGTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFSVKDHRGEL 234

Query:   246 YKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMS 305
             YKKHYPPAL+DEVWRL++I KDGA HK+L  A IVTVE FLR LVRD  KLR ILGSGMS
Sbjct:   235 YKKHYPPALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLRAILGSGMS 294

Query:   306 NRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQ 365
             N+MW+  VEHAKTCVL GKLY+YY + +++ GVVFNNIYEL GLI + Q++S +SL+ SQ
Sbjct:   295 NKMWDLLVEHAKTCVLSGKLYIYYTEDSRSVGVVFNNIYELSGLITEDQYLSADSLSESQ 354

Query:   366 KTLPDSGL 373
             K   D GL
Sbjct:   355 KVYVD-GL 361

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 245/368 (66%), Positives = 293/368 (79%)

Query:     1 MESSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRI 60
             M+S  N     +++++   D  P  K+   PA ASVIVEALK+DSLQ+LCSSLEP+LRR+
Sbjct:     2 MDSGNNNMNRAKRNLDGNDDDQPERKR---PAFASVIVEALKVDSLQKLCSSLEPILRRV 58

Query:    61 VSEEVERALTKFGHAKL--AARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGA 118
             VSEE+ERAL K G A+L  ++ S P RI GP  + LQLH+K+R+   LFTGGKVEG+QGA
Sbjct:    59 VSEELERALAKLGPARLTGSSGSSPKRIEGPDGRKLQLHFKSRLSLPLFTGGKVEGEQGA 118

Query:   119 AIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRP 178
              IHVVLID NTG  V  GPE+SAKL++VVLEGDFN E+D++WT+E FESH VKER GKRP
Sbjct:   119 VIHVVLIDANTGRAVVYGPEASAKLHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKRP 178

Query:   179 ILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAV 238
             +LTG++ VTLKEG GTLG+L FTDNSSWIRSRKFRLGL+V  G CDG+R+REAKTE F V
Sbjct:   179 LLTGEVYVTLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFVV 238

Query:   239 KDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRN 298
             KDHRGELYKKHYPPAL+D+VWRLD+I KDGA HKKL    I TVEDFLR++V+D  KLR 
Sbjct:   239 KDHRGELYKKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLRT 298

Query:   299 ILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSL 358
             ILGSGMSN+MW+  VEHAKTCV   KLY+YYA+ ++N GVVFNNIYEL GLI   Q+ S 
Sbjct:   299 ILGSGMSNKMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVFNNIYELSGLISGDQYFSA 358

Query:   359 ESLTHSQK 366
             +SLT SQK
Sbjct:   359 DSLTDSQK 366

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 247/371 (66%), Positives = 291/371 (78%)

Query:     3 SSRNKKRGYEQSVEDEADGMPGSKKSKLPALASVIVEALKMDSLQRLCSSLEPLLRRIVS 62
             +S  +KR  E+    +    P  K+   PALASVIVEALKMDSLQRLCSSLEP+LRR+VS
Sbjct:    10 NSMREKRKLEEDDNQQQQQQPERKR---PALASVIVEALKMDSLQRLCSSLEPILRRVVS 66

Query:    63 EEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHV 122
             EEVERAL K G A+L+ RS P RI G G +NLQL +++R+   LFTGGK+EG+QGAAIHV
Sbjct:    67 EEVERALAKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAIHV 126

Query:   123 VLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTG 182
             VL+DM TG V+  GPE+SAKL+VVVL+GDFN E+DD W+ E FE H VKER+GKRP+LTG
Sbjct:   127 VLLDMTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPLLTG 186

Query:   183 DLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHR 242
             D+ VTLKEG GTLG+L FTDNSSWIR RKFRLGL+VS GYC+G+RVREAKTE F VKDHR
Sbjct:   187 DVQVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVKDHR 246

Query:   243 GELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGS 302
             GELYKKHYPPAL DEVWRL++I KDGA HKKL KA I  V++FLR++V+D QKLR ILGS
Sbjct:   247 GELYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGS 306

Query:   303 GMSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLT 362
             GMSNRMWE   EH+KTCVL   LYVYY +   + GVVFNNIYE  GLI   Q+   +SL+
Sbjct:   307 GMSNRMWETLAEHSKTCVLSEMLYVYYPE--DSVGVVFNNIYEFSGLISGKQYYPADSLS 364

Query:   363 HSQKTLPDSGL 373
              +QK   D GL
Sbjct:   365 DNQKGYVD-GL 374

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 159/359 (44%), Positives = 221/359 (61%)

Query:     8 KRGYEQSVEDEADGMPGSKKSKLPALASVIVEAL-KMDSLQRLCSSLEPLLRRIVSEEVE 66
             KR ++    D+ +      KS LP+LAS I      + S   L S LEP++R++V +EVE
Sbjct:     4 KRLFQDLDSDQENKSEKRIKSVLPSLASPISSVFGALISENTLRSVLEPVIRKVVRQEVE 63

Query:    67 RALTKFGHAKLAARSPPPRIHGPGEKN--LQLHYKTRMPPHLFTGGKVEGDQGAAIHVVL 124
               ++K    +L+ RS   RI  P      L+L ++  +   +FTG K+       + ++L
Sbjct:    64 YGISK--RFRLS-RSSSFRIEAPEATTPTLKLIFRKNLMTPIFTGSKISDVDNNPLEIIL 120

Query:   125 IDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPILTGDL 184
             +D +   V    P    KL++V L GDF     D WT + FES+ +KER+GKRP+L G++
Sbjct:   121 VDDSNKPVNLNRP---IKLDIVALHGDF--PSGDKWTSDEFESNIIKERDGKRPLLAGEV 175

Query:   185 LVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYC-DGIRVREAKTEGFAVKDHRG 243
              VT++ G  T+G++ FTDNSSWIRSRKFR+G KV+ G    G+ V EA TE   V+DHRG
Sbjct:   176 SVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQGVVVCEAMTEAIVVRDHRG 235

Query:   244 ELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSG 303
             ELYKKH+PP L DEVWRL++I KDGA HKKL    I TV+DFL++ V D  +LR ILG G
Sbjct:   236 ELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDFLKLSVVDVDELRQILGPG 295

Query:   304 MSNRMWENTVEHAKTCVLGGKLYVYYADGTQNTGVVFNNIYE-LRGLIDDGQFVSLESL 361
             MS+R WE T++HA+ C+LG KLY+  + G  N  ++ N I E ++ LID     S ESL
Sbjct:   296 MSDRKWEVTLKHARECILGNKLYI--SRGP-NFFMILNPICEVMKALIDGHVLSSQESL 351

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 132/314 (42%), Positives = 195/314 (62%)

Query:    36 VIVEALKMDSLQRLCSSLEPLLRRIVSEEVERALTKFGHAKLAARSPPPRIHGPGEKN-L 94
             V+ + ++  S  +    +E ++RRIV EE++R+L  F  +   +     R   P  ++ L
Sbjct:    28 VVKKVMRDQSNNQFMIQMENMIRRIVREEIQRSLQPFLSSSCVSMERS-RSETPSSRSRL 86

Query:    95 QLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNE 154
             +L +    P  +FTG K+E + G+ + + L+D  T  +V TGP SS+++ +V L  DF E
Sbjct:    87 KLCFINSPPSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSSRVELVPLNADFTE 146

Query:   155 EEDDNWTKEHFESHEVKEREGKRPILTGDLLVTLKEGFGTL-GDLTFTDNSSWIRSRKFR 213
             E   +WT E F  + + +REGKRP+LTGDL V LK G G + GD+ F+DNSSW RSRKFR
Sbjct:   147 E---SWTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWTRSRKFR 203

Query:   214 LGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKK 273
             LG K++ G  DG    EA++E F  +D RGE YKKH+PP   DEVWRL++IAKDG    +
Sbjct:   204 LGAKLT-G--DG--AVEARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKDGVSATR 258

Query:   274 LMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGG-KLYVYYADG 332
             L +  I+TV+DF R+   +  +L NI+G+G+S + W   V HA  CVL   + Y+Y A+ 
Sbjct:   259 LAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECYIYNAN- 317

Query:   333 TQNTGVVFNNIYEL 346
             T    ++FN++YEL
Sbjct:   318 TPGVTLLFNSVYEL 331


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      387       387   0.00093  117 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  260 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.68u 0.18s 34.86t   Elapsed:  00:00:02
  Total cpu time:  34.68u 0.18s 34.86t   Elapsed:  00:00:02
  Start:  Sat May 11 16:05:01 2013   End:  Sat May 11 16:05:03 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001189 hypothetical protein (593 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-147

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  419 bits (1078), Expect = e-147
 Identities = 162/274 (59%), Positives = 202/274 (73%), Gaps = 2/274 (0%)

Query: 93  NLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDF 152
            L+L +  ++   +FTG K+E + GA I + L+D NTG     GP SSAKL VVVL GDF
Sbjct: 1   RLKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANTGVTS--GPLSSAKLEVVVLHGDF 58

Query: 153 NEEEDDNWTKEHFESHEVKEREGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKF 212
           N E+D+NWT+E F  + VKEREGKRP+LTGD+ VTLK G   +G++ FTDNSSW RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 213 RLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHK 272
           RLG +V  G  DG+RVREA TE F VKDHRGELYKKH+PP+L DEVWRL++I KDGA HK
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 273 KLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADG 332
           +L  + I TV+DFLR+L RDP KLR ILGSGMSN+MWE T+ HAKTCVLG K Y+Y    
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 333 TQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQK 366
            +N G+ FN++YEL G+  DG +V   +L+  Q+
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQQ 272

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	89.21
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	87.22
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	87.18
PRK04301	317	radA DNA repair and recombination protein RadA; Va	83.77
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	81.74
PF14520	60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	81.55

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=1.5e-121  Score=890.05  Aligned_cols=287  Identities=64%  Similarity=1.067  Sum_probs=282.7

Q ss_pred             ceEEEecCCCCCCcccCCccccCCCCceEEEEEeCCCCCeeccCCCCcceEEEEEeeCCCCCCCCCCCCHHHHhcccccc
Q 016573           93 NLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKE  172 (387)
Q Consensus        93 ~~~L~F~n~l~~pifT~~kI~a~~g~~I~V~L~D~~t~~~V~~Gplss~kveIvVLdGDF~~~~~e~WT~eEF~~~IV~~  172 (387)
                      +|||+|+|+|++|||||++|+|+||+||+|+|+|++|+  |++||+||+|||||||||||+++++++||+|||++|||++
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~--v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~~   78 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG--VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVKE   78 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC--ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEeec
Confidence            58999999999999999999999999999999999988  9999999999999999999999999999999999999999


Q ss_pred             CCCCccccccceEEEeccceeecCCceeecCCccccccceeEEEEecCCCCCCcceeeeeecCeEeeecCCCccccCCCC
Q 016573          173 REGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVREAKTEGFAVKDHRGELYKKHYPP  252 (387)
Q Consensus       173 R~Gk~pLL~Gdl~v~L~~Gva~l~di~FtDnSs~~rsrKFRLgarv~~~~~~g~RI~EAvse~FvVkd~Rge~~kKh~pP  252 (387)
                      |+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+|||||||
T Consensus        79 r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~pP  158 (299)
T PF07887_consen   79 REGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYPP  158 (299)
T ss_pred             CCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCCCeeEEEEecC
Q 016573          253 ALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGGKLYVYYADG  332 (387)
Q Consensus       253 ~L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~k~~~y~~~~  332 (387)
                      +|+|||||||+|||||+|||+|+.+||+||+|||+++++||++||+|||+|||++||++||+|||||++++++|+|| .+
T Consensus       159 ~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~-~~  237 (299)
T PF07887_consen  159 SLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYY-DE  237 (299)
T ss_pred             CCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEE-ec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 55


Q ss_pred             CCcEEEEEcccceeeeeeeCCeEeecCCCChhhhhhhhhhHHHhHhhccc
Q 016573          333 TQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKTLPDSGLHEHVFAFRY  382 (387)
Q Consensus       333 ~~nv~l~FN~i~~lvG~~~~g~y~~~~~L~~~qk~~V~~L~~qa~~~~~~  382 (387)
                      ++|++|+|||||+||||+|+|+|+|.|+||+.||++|++|+++||..|+.
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~~v~~Lv~~AY~n~~~  287 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKAYVDKLVKQAYENWDN  287 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHHHHHHHHHHHHHhhhh
Confidence            68999999999999999999999999999999999999999999999974

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=89.21  E-value=0.49  Score=47.27  Aligned_cols=48  Identities=27%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             hhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 016573          270 LHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLG  322 (387)
Q Consensus       270 ~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~  322 (387)
                      --++|+++||.||+||+.   .+|..|.+++  |+|...++.+..||.+|...
T Consensus        13 ~~~~l~~~g~~t~~~~~~---~~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~   60 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAY---APKKQLLEIK--GISEAKADKILAEAAKLVPM   60 (316)
T ss_pred             HHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            448999999999999986   4899999998  89999999999999988653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=87.22  E-value=0.69  Score=46.27  Aligned_cols=49  Identities=29%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             hhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 016573          269 ALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLG  322 (387)
Q Consensus       269 ~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~  322 (387)
                      ..-++|+++||.||+||+.   .++..|.++.  |+|...++.+++.|+.+...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~---~~~~~L~~~~--gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIM---TTRRALCKIK--GLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHh---CCHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence            3458999999999999876   4899999997  89999999999999988654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=87.18  E-value=0.69  Score=47.01  Aligned_cols=61  Identities=30%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             ceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccCCC
Q 016573          258 VWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVLGG  323 (387)
Q Consensus       258 VwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~  323 (387)
                      +-.|..-|-.-.--++|.++||.||+||+.+   ++..|.++.  |+|....+.+++||.+|....
T Consensus        28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~~   88 (342)
T PLN03186         28 IEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPLG   88 (342)
T ss_pred             HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhcccc
Confidence            4444443333334599999999999998764   789999998  899999999999998886543

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=83.77  E-value=0.84  Score=45.01  Aligned_cols=57  Identities=21%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 016573          257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCV  320 (387)
Q Consensus       257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv  320 (387)
                      ++-.|..||+.  ..++|.++||+|++|++.   .|++.|.+++  |++.+.++.+.+-|+.+.
T Consensus         7 ~l~~l~gIg~~--~a~~L~~~Gi~t~~dl~~---~~~~~L~~~~--g~~~~~a~~l~~~a~~~~   63 (317)
T PRK04301          7 DLEDLPGVGPA--TAEKLREAGYDTVEAIAV---ASPKELSEAA--GIGESTAAKIIEAAREAA   63 (317)
T ss_pred             cHhhcCCCCHH--HHHHHHHcCCCCHHHHHc---CCHHHHHHhc--CCCHHHHHHHHHHHHHhh
Confidence            34455566654  459999999999999965   5999999998  788889998888887644

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=81.74  E-value=1.3  Score=45.04  Aligned_cols=60  Identities=22%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             cceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 016573          257 EVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVL  321 (387)
Q Consensus       257 eVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl  321 (387)
                      ++..|+.-|-.-.--++|.++||+||+|++.   .++..|-++.  |+|....+.+++.|+..+.
T Consensus        30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~---~~~~~L~~~~--g~s~~~~~ki~~~a~~~~~   89 (344)
T PLN03187         30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMM---HTKKNLTGIK--GLSEAKVDKICEAAEKLLN   89 (344)
T ss_pred             CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Confidence            3556655333344559999999999999876   4788899986  8999999999999887653

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A

Probab=81.55  E-value=0.58  Score=35.45  Aligned_cols=50  Identities=34%  Similarity=0.528  Sum_probs=40.2

Q ss_pred             eeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhc
Q 016573          261 LDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAK  317 (387)
Q Consensus       261 LekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAk  317 (387)
                      +.+||+.-+  ++|.++||.|++|+..   -+++.|.++=  |++.+.=+.+++.|+
T Consensus        10 I~Gig~~~a--~~L~~~G~~t~~~l~~---a~~~~L~~i~--Gig~~~a~~i~~~~~   59 (60)
T PF14520_consen   10 IPGIGPKRA--EKLYEAGIKTLEDLAN---ADPEELAEIP--GIGEKTAEKIIEAAR   59 (60)
T ss_dssp             STTCHHHHH--HHHHHTTCSSHHHHHT---SHHHHHHTST--TSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHH--HHHHhcCCCcHHHHHc---CCHHHHhcCC--CCCHHHHHHHHHHHh
Confidence            455666544  8999999999999866   4888899885  789999999998886

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 43/381 (11%), Positives = 92/381 (24%), Gaps = 156/381 (40%)

Query: 4   SRNK--------KRGYEQSVEDEADGMP------------GSKKSKLPALA--------S 35
           +R K              S++  +  +               +   LP           S
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 36  VIVEAL----------------KMDSLQRLC-SSLEPLLRR------------------- 59
           +I E++                K+ ++     + LEP   R                   
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 60  -------IVSEEVERALTKFGHAKLAARSPPP---RIHGPGEKNLQLHYKTRMPPHLFTG 109
                  ++  +V   + K     L  + P      I       + L  K ++       
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-----IYLELKVKL------- 439

Query: 110 GKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHE 169
                +   A+H  ++D                +       D      D +   H   H 
Sbjct: 440 -----ENEYALHRSIVD-------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 170 VKEREGKRPILTGDLLVTLKEGFGTLGDLTFTDNSSWIRSRKFRLGLKVSPGYCDGIRVR 229
                 +R  L   + +          D        ++  +K R          D     
Sbjct: 482 KNIEHPERMTLFRMVFL----------DF------RFLE-QKIRH---------DSTAWN 515

Query: 230 EAKTEGFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLR-- 287
            + +    ++  +   YK +              I  +   +++L+ A    + DFL   
Sbjct: 516 ASGSILNTLQQLK--FYKPY--------------ICDNDPKYERLVNA----ILDFLPKI 555

Query: 288 --ILVRDPQKLRNILGSGMSN 306
              L+       ++L   +  
Sbjct: 556 EENLICSKY--TDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 57/421 (13%), Positives = 114/421 (27%), Gaps = 162/421 (38%)

Query: 20  DGMPGSKKSKLPALASVIVEALKMDSLQRL------------CSS-------LEPLLRRI 60
           DG+ GS K+    +A   ++      +Q              C+S       L+ LL +I
Sbjct: 156 DGVLGSGKT---WVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 61  VSEEVERALTKFGHAKLAARSPPPRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAI 120
                 R+          + +   RIH   +  L+   K++   +               
Sbjct: 210 DPNWTSRS--------DHSSNIKLRIHS-IQAELRRLLKSKPYEN--------------- 245

Query: 121 HVVLIDMNTGDVVQTGPESSAKLNVVVLEGDFNEEEDDNWTKEHFESHEVKEREGKRPIL 180
              L+                     VL         +    + + +  +  +     IL
Sbjct: 246 --CLL---------------------VL--------LNVQNAKAWNAFNLSCK-----IL 269

Query: 181 --TGDLLVTLKEGFGTLGDL-------TFTDN------SSWIRSRKFRL---GLKVSPGY 222
             T    VT      T   +       T T +        ++  R   L    L  +P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 223 CDGIRVREAKTEGFAVKDH--RGELYKKHYPPALHDEVWRLDRIAK------DGALHKKL 274
              I          +++D     + +K       H    +L  I +      + A ++K+
Sbjct: 330 LSII--------AESIRDGLATWDNWK-------HVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 275 MKADIVTVEDFLRILVRD---PQKLRNILGSGMSNRMWENTVE----------HAKTCVL 321
                      L +       P  L +++        W + ++          H  + V 
Sbjct: 375 FDR--------LSVFPPSAHIPTILLSLI--------WFDVIKSDVMVVVNKLHKYSLVE 418

Query: 322 GG--KLYVYYADGTQNTGVVFNNIYEL-RGLIDDGQFVSLESLTHSQKTLP--DSGLHEH 376
               +  +          V   N Y L R ++D   +   ++        P  D   + H
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 377 V 377
           +
Sbjct: 477 I 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 45/328 (13%), Positives = 93/328 (28%), Gaps = 100/328 (30%)

Query: 33  LASVIVEALKMDSLQRLCSSLEPLLRRIVS-EEVERALTKFGHAKLAAR--------SPP 83
           + SV  +A   +     C  ++ + + I+S EE++  +     A                
Sbjct: 21  ILSVFEDAFVDN-FD--CKDVQDMPKSILSKEEIDHII-MSKDAVSGTLRLFWTLLSKQE 76

Query: 84  PRIHGPGEKNLQLHYKTRMPPHLFTGGKVEGDQGAAIHVVLIDMNTGDVVQTGPESSAKL 143
             +    E+ L+++Y       L +  K E  Q + +  + I+    D +    +  AK 
Sbjct: 77  EMVQKFVEEVLRINY-----KFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKY 129

Query: 144 NVVVLEGDFNEEEDDNWTKEHFESHEVKE-----REGKRPILTGDLLVTLKEGFG----- 193
           NV                 + +   ++++     R  K  ++ G L      G G     
Sbjct: 130 NV--------------SRLQPY--LKLRQALLELRPAKNVLIDGVL------GSGKTWVA 167

Query: 194 --TLGDLTFTDNSS----WIRSRKFR-----------LGLKVSPGYCDGI-RVREAKTEG 235
                             W+  +              L  ++ P +          K   
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 236 FAVKDHRGELYK-KHYPPALH--DEVWRLDRIAKDGALHKKLMKADIVTVEDFL---RIL 289
            +++     L K K Y   L     V            + K   A       F    +IL
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQ-----------NAKAWNA-------FNLSCKIL 269

Query: 290 V--RDPQKLRNILGSGMSNRMWENTVEH 315
           +  R     + +     +      +++H
Sbjct: 270 LTTRF----KQVTDFLSAATTTHISLDH 293

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	93.09
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	89.76
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	80.43

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=93.09  E-value=0.025  Score=43.95  Aligned_cols=62  Identities=24%  Similarity=0.407  Sum_probs=50.8

Q ss_pred             CCCcceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcc-ccCC
Q 016573          254 LHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKT-CVLG  322 (387)
Q Consensus       254 L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt-Cvl~  322 (387)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..   .+++.|-.|.  |+|...=+.++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            4567778887776555  8999999999998754   4888898887  8999999999999998 7553

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=89.76  E-value=0.3  Score=39.27  Aligned_cols=40  Identities=20%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             hhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHh
Q 016573          271 HKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEH  315 (387)
Q Consensus       271 hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~H  315 (387)
                      -++|.+++|.||+||+.   .|+.+|.+++  |+|-+.=-.+..|
T Consensus        17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r~   56 (83)
T 2kz3_A           17 IQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRRV   56 (83)
T ss_dssp             HHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHH
Confidence            48999999999999975   7999999999  5665554444433

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=80.43  E-value=0.67  Score=43.42  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=42.3

Q ss_pred             CcceeeeeecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 016573          256 DEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCV  320 (387)
Q Consensus       256 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv  320 (387)
                      +++..|++|+.  ..-++|.++||+||+||+.   .++..|-++.  |+|.+.=+.+++.|+.+.
T Consensus         3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~   60 (322)
T 2i1q_A            3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLC   60 (322)
T ss_dssp             --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHT
T ss_pred             ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhh
Confidence            45666775554  4569999999999999985   4577777775  678777777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	91.91

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.91  E-value=0.043  Score=40.25  Aligned_cols=52  Identities=23%  Similarity=0.229  Sum_probs=43.7

Q ss_pred             eecccchhhhhhhhCCCccHHHHHHHHhcChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 016573          263 RIAKDGALHKKLMKADIVTVEDFLRILVRDPQKLRNILGSGMSNRMWENTVEHAKTCVL  321 (387)
Q Consensus       263 kIgKdG~~hkrL~~~gI~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl  321 (387)
                      +||...+  ++|.++|++||++.   .+..++.|-++-  |++.+.=+.+++-|+.++.
T Consensus        10 Gig~~~~--~kL~~aG~~Tve~i---a~~t~~~L~~i~--Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMADV--KKLRESGLHTAEAV---AYAPRKDLLEIK--GISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHHH--HHHHTTSCCSHHHH---HHSCSHHHHTST--TCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHH--HHHHHcCCCcHHHH---HhCCHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence            5666555  99999999999987   456788888885  8999999999999998764