Citrus Sinensis ID: 016581

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLFE
ccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccHHHHcccccccEEEccccccccccccccccHHHHHHHHHHcccccccEEEcHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHcccccEEEEEcccccccHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcc
cccEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHccccHHHccccccccHHHHHHHHcccccccHHHHHHHccccEEEEEEccccccEEcccccHHHHHHHHHHHccccccEEEEccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHccccHHHHHHHHHHHHHHHHHcccccHEHEHHcHHcHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHcccccEEcccEEcccccccccHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcc
mashivgyprmgpkRELKFALESfwdgkssaEDLQKVSADLRSSIWKQMSEAGikyipsntfsyydQVLDTtamlgavpprfnwnggeigfDVYFSMARGNASVLAMEMTKWfdtnyhfivpelgpdvkfsyaSHKAVTEYkeakghgvetvpvlIGPVSYlllskpawgvektFSVLSLLPKILPIYKEVVSELKAAGaswiqfdepllvmdldshKLQAFIHSfritncgiqdttQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGvqydaaigpgvydihspripsteEIVDRIYEMRTVLETNilwvnpdcglktrkytevkpALSNMVAATKLLRTQltvprrlegsflsHCASIFEQTKAFLSYYLFE
mashivgyprmgpkRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYkeakghgvetVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIgpgvydihspriPSTEEIVDRIYEMRTVLEtnilwvnpdcglktRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLFE
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLFE
*****************KFALESFW***************LRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLF*
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFL**Y***
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLFE
*ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLFE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLTVPRRLEGSFLSHCASIFEQTKAFLSYYLFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
P93263 765 5-methyltetrahydropteroyl N/A no 0.568 0.287 0.871 1e-116
Q42699 765 5-methyltetrahydropteroyl N/A no 0.568 0.287 0.836 1e-112
O50008 765 5-methyltetrahydropteroyl no no 0.568 0.287 0.831 1e-111
Q42662 764 5-methyltetrahydropteroyl N/A no 0.581 0.294 0.836 1e-109
Q93J59 772 5-methyltetrahydropteroyl yes no 0.532 0.266 0.511 3e-66
B1VV57 774 5-methyltetrahydropteroyl yes no 0.697 0.348 0.435 4e-65
Q98A73 776 5-methyltetrahydropteroyl yes no 0.824 0.411 0.389 1e-64
Q82LG4 772 5-methyltetrahydropteroyl yes no 0.638 0.319 0.467 3e-64
Q2S338 769 5-methyltetrahydropteroyl yes no 0.943 0.474 0.371 1e-63
B3QGC4 788 5-methyltetrahydropteroyl yes no 0.826 0.406 0.383 4e-59
>sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1 Back     alignment and function desciption
 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/226 (87%), Positives = 212/226 (93%)

Query: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
           MASHIVGYPRMGPKRELKFALESFWDGKS+AEDL+KVSADLRSSIWKQM++AGIKYIPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLKKVSADLRSSIWKQMADAGIKYIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFI 120
           TFSYYDQVLDTTAMLGAVPPR+ W GGEI FDVYFSMARGNASV AMEMTKWFDTNYHFI
Sbjct: 61  TFSYYDQVLDTTAMLGAVPPRYGWTGGEIEFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120

Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSL 180
           VPELGP+V FSYASHKAV EYKEAK  GV+TVPVL+GPVSYLLLSK A GV+K+F +LSL
Sbjct: 121 VPELGPEVNFSYASHKAVLEYKEAKALGVDTVPVLVGPVSYLLLSKQAKGVDKSFDLLSL 180

Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSF 226
           LPKILPIYKEVV+ELK AGASWIQFDEPLLVMDL+SHKLQAF  ++
Sbjct: 181 LPKILPIYKEVVAELKEAGASWIQFDEPLLVMDLESHKLQAFSAAY 226
Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.
Mesembryanthemum crystallinum (taxid: 3544)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1 Back     alignment and function description
>sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1 Back     alignment and function description
>sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2 Back     alignment and function description
>sp|Q93J59|METE_STRCO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B1VV57|METE_STRGG 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|Q98A73|METE_RHILO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhizobium loti (strain MAFF303099) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|Q82LG4|METE_STRAW 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|Q2S338|METE_SALRD 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=metE PE=3 SV=1 Back     alignment and function description
>sp|B3QGC4|METE_RHOPT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
151347486 765 methionine synthase [Carica papaya] 0.568 0.287 0.902 1e-118
224146039 765 vitamin-b12 independent methionine synth 0.568 0.287 0.893 1e-117
255569484 765 5-methyltetrahydropteroyltriglutamate--h 0.568 0.287 0.880 1e-117
224125928 765 vitamin-b12 independent methionine synth 0.568 0.287 0.889 1e-117
296084004 804 unnamed protein product [Vitis vinifera] 0.839 0.404 0.625 1e-115
225436073 765 PREDICTED: 5-methyltetrahydropteroyltrig 0.839 0.424 0.625 1e-115
309756515 757 pollen allergen MetE [Amaranthus retrofl 0.568 0.290 0.867 1e-114
224131686 765 vitamin-b12 independent methionine synth 0.568 0.287 0.862 1e-114
449437751 765 PREDICTED: 5-methyltetrahydropteroyltrig 0.545 0.275 0.862 1e-114
113473614 765 methionine synthase [Orobanche ramosa] 0.568 0.287 0.862 1e-114
>gi|151347486|gb|ABS01352.1| methionine synthase [Carica papaya] Back     alignment and taxonomy information
 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/226 (90%), Positives = 216/226 (95%)

Query: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
           MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKV+ADLRSSIWKQMS+A IKYIPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSDARIKYIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFI 120
           TFSYYDQVLDTTAMLGAVPPR+NWNGGEIGFDVYFSMARGNASV AMEMTKWFDTNYHFI
Sbjct: 61  TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120

Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSL 180
           VPELGPDV FSYASHKAVTEYKEAK  GV+TVPVL+GPVSYLLLSKPA GVEKTFS+LSL
Sbjct: 121 VPELGPDVTFSYASHKAVTEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKTFSLLSL 180

Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSF 226
           L KILP+YKEV+SELKAAGASWIQFDEP LV+DLD+HKLQAF  ++
Sbjct: 181 LNKILPVYKEVISELKAAGASWIQFDEPTLVLDLDAHKLQAFTDAY 226

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146039|ref|XP_002325856.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222862731|gb|EEF00238.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255569484|ref|XP_002525709.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223535009|gb|EEF36692.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224125928|ref|XP_002319710.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222858086|gb|EEE95633.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084004|emb|CBI24392.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436073|ref|XP_002276908.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|309756515|gb|ADO87039.1| pollen allergen MetE [Amaranthus retroflexus] Back     alignment and taxonomy information
>gi|224131686|ref|XP_002328083.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222837598|gb|EEE75963.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437751|ref|XP_004136654.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cucumis sativus] gi|449526387|ref|XP_004170195.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|113473614|gb|ABI35986.1| methionine synthase [Orobanche ramosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2079434 765 MS2 "methionine synthase 2" [A 0.573 0.290 0.860 1.5e-164
TAIR|locus:2170318 765 ATMS1 "methionine synthesis 1" 0.583 0.295 0.831 3.4e-100
TAIR|locus:2147147 812 MS3 "methionine synthase 3" [A 0.583 0.278 0.774 5.9e-96
DICTYBASE|DDB_G0279211825 DDB_G0279211 "5-methyltetrahyd 0.421 0.197 0.494 2.8e-57
UNIPROTKB|P65340 759 metE "5-methyltetrahydropteroy 0.594 0.303 0.444 4.4e-52
POMBASE|SPAC9.09 764 met26 "homocysteine methyltran 0.571 0.289 0.423 2e-46
TIGR_CMR|SO_0818 760 SO_0818 "5-methyltetrahydropte 0.904 0.460 0.338 5.4e-46
UNIPROTKB|G4ML75 766 MGG_06712 "5-methyltetrahydrop 0.689 0.348 0.394 9.6e-46
UNIPROTKB|Q9KRD8 761 metE "5-methyltetrahydropteroy 0.819 0.416 0.330 1.2e-45
TIGR_CMR|VC_1704 761 VC_1704 "5-methyltetrahydropte 0.819 0.416 0.330 1.2e-45
TAIR|locus:2079434 MS2 "methionine synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1001 (357.4 bits), Expect = 1.5e-164, Sum P(2) = 1.5e-164
 Identities = 191/222 (86%), Positives = 205/222 (92%)

Query:     1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
             MASHIVGYPRMGPKRELKFALESFWDGKSSA+DLQKVSADLRS IWKQMS AGIKYIPSN
Sbjct:     1 MASHIVGYPRMGPKRELKFALESFWDGKSSADDLQKVSADLRSDIWKQMSAAGIKYIPSN 60

Query:    61 TFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFI 120
             TFS+YDQVLDTTAMLGAVP R+ +  GEIG DVYFSMARGNASV AMEMTKWFDTNYH+I
Sbjct:    61 TFSHYDQVLDTTAMLGAVPSRYGFTSGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query:   121 VPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSL 180
             VPELGP+VKFSYASHKAV EYKEAK  GVETVPVL+GPVSYLLLSK A GV+K+F +LSL
Sbjct:   121 VPELGPEVKFSYASHKAVNEYKEAKALGVETVPVLVGPVSYLLLSKLAKGVDKSFDLLSL 180

Query:   181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAF 222
             LPKILP+YKEV++ELKAAGASWIQ DEPL VMDL+ HKLQAF
Sbjct:   181 LPKILPVYKEVIAELKAAGASWIQLDEPLFVMDLEGHKLQAF 222
GO:0003871 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0009086 "methionine biosynthetic process" evidence=IEA;ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0008705 "methionine synthase activity" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0048046 "apoplast" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2170318 ATMS1 "methionine synthesis 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147147 MS3 "methionine synthase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279211 DDB_G0279211 "5-methyltetrahydropteroyltriglutamate-homocysteine-S-methyltransfe rase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P65340 metE "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
POMBASE|SPAC9.09 met26 "homocysteine methyltransferase Met26" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0818 SO_0818 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|G4ML75 MGG_06712 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRD8 metE "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1704 VC_1704 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.1.1.14LOW CONFIDENCE prediction!
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MS3
SubName- Full=Putative uncharacterized protein; (766 aa)
(Populus trichocarpa)
Predicted Functional Partners:
METK2
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
   • •• 0.918
estExt_fgenesh4_pm.C_LG_XVII0132
SubName- Full=Putative uncharacterized protein; (532 aa)
     •• 0.918
METK3
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (396 aa)
   • •• 0.918
METK4
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
   • •• 0.918
AdoMet5
s-adenosylmethionine synthetase 5 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (392 aa)
   • •• 0.917
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
   • •• 0.917
AdoMet3
s-adenosylmethionine synthetase 3 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (395 aa)
   • •• 0.917
estExt_Genewise1_v1.C_LG_I3343
adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (EC-3.3.1.1) (485 aa)
   • •• 0.916
eugene3.00880022
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (485 aa)
   • •• 0.916
gw1.X.2264.1
hypothetical protein (594 aa)
     •• 0.911

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PLN02475 766 PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl 1e-159
cd03312360 cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-i 1e-130
PRK05222 758 PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl 1e-118
pfam08267310 pfam08267, Meth_synt_1, Cobalamin-independent synt 1e-114
TIGR01371 750 TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero 1e-108
PLN02475766 PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl 1e-93
PRK05222758 PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl 3e-79
TIGR01371750 TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero 7e-78
pfam01717324 pfam01717, Meth_synt_2, Cobalamin-independent synt 1e-63
COG0620330 COG0620, MetE, Methionine synthase II (cobalamin-i 6e-58
cd03311332 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i 9e-53
PRK04326330 PRK04326, PRK04326, methionine synthase; Provision 4e-26
cd03310321 cd03310, CIMS_like, CIMS - Cobalamine-independent 7e-15
PRK00957305 PRK00957, PRK00957, methionine synthase; Provision 7e-15
PRK01207343 PRK01207, PRK01207, methionine synthase; Provision 9e-10
cd00465306 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot 5e-09
cd01143195 cd01143, YvrC, Periplasmic binding protein YvrC 0.003
>gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information 
 Score =  465 bits (1198), Expect = e-159
 Identities = 198/226 (87%), Positives = 213/226 (94%)

Query: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
           MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKV+ADLRSSIWKQMS AGIKYIPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFI 120
           TFSYYDQVLDTTAMLGAVPPR+ W GGEIGFDVYFSMARGNASV AMEMTKWFDTNYH+I
Sbjct: 61  TFSYYDQVLDTTAMLGAVPPRYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSL 180
           VPELGP+VKFSYASHKAV EYKEAK  GV+TVPVL+GPVSYLLLSKPA GV+K+F +LSL
Sbjct: 121 VPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVDKSFDLLSL 180

Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSF 226
           L KILP+YKEV++ELKAAGASWIQFDEP LVMDL+SHKLQAF  ++
Sbjct: 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAY 226

Length = 766
>gnl|CDD|239428 cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|219768 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic domain Back     alignment and domain information
>gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|100814 PRK01207, PRK01207, methionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PRK05222758 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PLN02475766 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
KOG2263765 consensus Methionine synthase II (cobalamin-indepe 100.0
cd03312360 CIMS_N_terminal_like CIMS - Cobalamine-independent 100.0
PF08267310 Meth_synt_1: Cobalamin-independent synthase, N-ter 100.0
TIGR01371 750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 100.0
PRK09121339 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK08575326 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
COG0620330 MetE Methionine synthase II (cobalamin-independent 100.0
PRK06520368 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK06233372 hypothetical protein; Provisional 100.0
TIGR01371750 met_syn_B12ind 5-methyltetrahydropteroyltriglutama 100.0
PRK01207343 methionine synthase; Provisional 100.0
PRK04326330 methionine synthase; Provisional 100.0
PF01717324 Meth_synt_2: Cobalamin-independent synthase, Catal 100.0
cd03311332 CIMS_C_terminal_like CIMS - Cobalamine-independent 100.0
PRK00957305 methionine synthase; Provisional 100.0
cd03310321 CIMS_like CIMS - Cobalamine-independent methonine 100.0
PRK06052344 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
PRK06438292 hypothetical protein; Provisional 100.0
PRK05222758 5-methyltetrahydropteroyltriglutamate--homocystein 99.97
PLN02475766 5-methyltetrahydropteroyltriglutamate--homocystein 99.97
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 99.92
KOG2263765 consensus Methionine synthase II (cobalamin-indepe 99.85
cd03465330 URO-D_like The URO-D _like protein superfamily inc 99.73
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 99.71
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 99.7
cd03307326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 99.58
PRK00115346 hemE uroporphyrinogen decarboxylase; Validated 99.54
PLN02433345 uroporphyrinogen decarboxylase 99.52
TIGR01464338 hemE uroporphyrinogen decarboxylase. This model re 99.52
cd00717335 URO-D Uroporphyrinogen decarboxylase (URO-D) is a 99.48
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 99.38
cd03308378 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro 99.25
cd03309321 CmuC_like CmuC_like. Proteins similar to the putat 99.15
COG0407352 HemE Uroporphyrinogen-III decarboxylase [Coenzyme 99.13
KOG2872359 consensus Uroporphyrinogen decarboxylase [Coenzyme 97.41
PRK08091228 ribulose-phosphate 3-epimerase; Validated 95.43
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 94.68
PF00834201 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam 94.2
PRK08005210 epimerase; Validated 93.54
PLN02334229 ribulose-phosphate 3-epimerase 93.06
COG0646311 MetH Methionine synthase I (cobalamin-dependent), 92.85
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 92.78
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 92.76
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 91.05
COG1410 842 MetH Methionine synthase I, cobalamin-binding doma 90.9
PRK14057254 epimerase; Provisional 90.72
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 89.75
KOG3111224 consensus D-ribulose-5-phosphate 3-epimerase [Carb 89.63
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 89.02
cd00530293 PTE Phosphotriesterase (PTE) catalyzes the hydroly 88.92
PRK07535261 methyltetrahydrofolate:corrinoid/iron-sulfur prote 88.91
cd00739257 DHPS DHPS subgroup of Pterin binding enzymes. DHPS 88.45
PRK10812265 putative DNAse; Provisional 87.42
COG5016 472 Pyruvate/oxaloacetate carboxyltransferase [Energy 85.29
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 84.82
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 83.2
PRK08195 337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 82.69
COG3462117 Predicted membrane protein [Function unknown] 82.28
TIGR01496257 DHPS dihydropteroate synthase. This model represen 82.02
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 80.41
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-78  Score=646.26  Aligned_cols=353  Identities=54%  Similarity=0.956  Sum_probs=327.3

Q ss_pred             CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581            1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP   80 (387)
Q Consensus         1 ~~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~   80 (387)
                      |+||++||||+|++||||+|+|+||+|+||.++|+++.+++++++|+.|+++|||+||||||+|||||+|++++||+||+
T Consensus         2 ~~~~~lGyPRiG~~reLK~A~e~yw~g~is~~eL~~~~~~~~~~~~~~Q~~~Gld~it~Gdfs~yd~vLD~~~~lg~ip~   81 (758)
T PRK05222          2 IKTHILGFPRIGPRRELKKALESYWAGKISEEELLATARELRARHWQRQKEAGLDLIPVGDFSYYDHVLDTAVLLGAIPE   81 (758)
T ss_pred             CccccCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEeccCCcccHHHHHHHHHHhCCCch
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHH
Q 016581           81 RFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVS  160 (387)
Q Consensus        81 r~~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~t  160 (387)
                      ||....+..+++.||+++||..+.++++|||||||||||++|++++++++++..++++++|++|++.|.++|++||||+|
T Consensus        82 rf~~~~~~~~~~~yF~~arg~~~~~~~emtKwF~tNYhY~VPei~g~~~~~~~~~~~l~e~~~ak~~g~~~K~vl~GP~T  161 (758)
T PRK05222         82 RFGNLGGSVDLDTYFAMARGGKDVAALEMTKWFNTNYHYIVPEFDPDTQFKLTSNKLLDEFEEAKALGINTKPVLLGPVT  161 (758)
T ss_pred             hhccccCCCccccceecccCCCCcccccceEEecCCCceeCcEEcCCcccccCCCcHHHHHHHHHhCCCCceEEEccHHH
Confidence            99765445578899999999766668999999999999999999999999877889999999999998899999999999


Q ss_pred             HHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHH---------------------
Q 016581          161 YLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKL---------------------  219 (387)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~---------------------  219 (387)
                      |+.+++....|   ++..+++++|+++|++++++|+++||+|||||||+|+.+++.+..                     
T Consensus       162 ~l~ls~~~~~~---~~~~ell~dl~~~y~~~l~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~y~~l~~~~~~~~i~l  238 (758)
T PRK05222        162 FLWLSKSKGEG---FDRLDLLDDLLPVYAELLAELAAAGAEWVQIDEPALVLDLPQEWLEAFKRAYEALAAAKPRPKLLL  238 (758)
T ss_pred             HHHHhcccccC---CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCchhhcCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            99888731122   278999999999999999999999999999999999987663321                     


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       239 ~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~ve~L~l  318 (758)
T PRK05222        239 ATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKVDRLWV  318 (758)
T ss_pred             EeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhhccEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       319 spsCgL~~vP~~~~~E~~l~~~~~~~~afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  398 (758)
T PRK05222        319 APSCSLLHVPVDLDAETKLDPELKSWLAFAKQKLEELALLARALNGGRGAVAEALAANRAAIAARRTSPRVHNPAVRARL  398 (758)
T ss_pred             eCCCCCcCCCccccccccCCHHHHhhhhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhCCccCCHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       399 ~~~~~~~~~r~~~~~~r~~~q~~~~~~p~~~tt~IGSfPrp~~l~~ar~~~~~g~i~~~~~~~~~~~~i~~~V~~Qe~~G  478 (758)
T PRK05222        399 AALTEADFQRQSPYAERAAAQRARLNLPLLPTTTIGSFPQTTEIRKARAAFKKGELSEEEYEAFIREEIARAIRLQEELG  478 (758)
T ss_pred             HhCCHhhcccCCcHHHHHHHHHHHhCCCCCcccccCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       479 lDvltdGE~~R~d~v~~F~~~l~Gf~~~~~g~v~~~g~~~~r~p~i~G~i~~~~p~~v~~~~~aq~~t~~~vK~~ltGP~  558 (758)
T PRK05222        479 LDVLVHGEFERNDMVEYFGEQLDGFAFTQNGWVQSYGSRCVKPPIIYGDVSRPEPMTVEWIKYAQSLTDKPVKGMLTGPV  558 (758)
T ss_pred             CCEeecCceeeeehHHHHHHhCCCeeecCCceeeeeCCcCCCCCeeeCCCcCCCCCchHHHHHHHhccCCCCcEEEecHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------HHHHHHHHHHHcCCCCCc
Q 016581          220 --------------------------------------------------------------QAFIHSFRITNCGIQDTT  237 (387)
Q Consensus       220 --------------------------------------------------------------~~a~~~~~~~~~~~~~~~  237 (387)
                                                                                    +++++++|.+++++++++
T Consensus       559 T~~~~s~~r~~~~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~~~  638 (758)
T PRK05222        559 TILNWSFVRDDQPREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKDET  638 (758)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCCCC
Confidence                                                                          037899999999999999


Q ss_pred             eEEEEecCCCchhHHHHHHcCCCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhc
Q 016581          238 QIHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVL  317 (387)
Q Consensus       238 ~v~lH~C~gn~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v  317 (387)
                      +|+||+|||||.++++.|.++++|+|++|++|+++++|+.|++ .++++.|++||||+||+++|++|+|++||+++++++
T Consensus       639 ~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v  717 (758)
T PRK05222        639 QIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVI  717 (758)
T ss_pred             EEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998988999999988 566788999999999999999999999999999999


Q ss_pred             CCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016581          318 ETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQLT  357 (387)
Q Consensus       318 ~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l~  357 (387)
                      |++++||||||||++++++++++||++|+++|+.+|++|+
T Consensus       718 ~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~r~~~~  757 (758)
T PRK05222        718 PAERLWVNPDCGLKTRGWEETIAALKNMVAAAKELRAELA  757 (758)
T ss_pred             ChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999986

>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like Back     alignment and domain information
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK06233 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase Back     alignment and domain information
>PRK01207 methionine synthase; Provisional Back     alignment and domain information
>PRK04326 methionine synthase; Provisional Back     alignment and domain information
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 Back     alignment and domain information
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>PRK00957 methionine synthase; Provisional Back     alignment and domain information
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional Back     alignment and domain information
>PRK06438 hypothetical protein; Provisional Back     alignment and domain information
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional Back     alignment and domain information
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated Back     alignment and domain information
>PLN02433 uroporphyrinogen decarboxylase Back     alignment and domain information
>TIGR01464 hemE uroporphyrinogen decarboxylase Back     alignment and domain information
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC Back     alignment and domain information
>cd03309 CmuC_like CmuC_like Back     alignment and domain information
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 Back     alignment and domain information
>PRK08005 epimerase; Validated Back     alignment and domain information
>PLN02334 ribulose-phosphate 3-epimerase Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon Back     alignment and domain information
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated Back     alignment and domain information
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes Back     alignment and domain information
>PRK10812 putative DNAse; Provisional Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>COG3462 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR01496 DHPS dihydropteroate synthase Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1u1h_A 765 A. Thaliana Cobalamine Independent Methionine Synth 1e-106
1u1h_A765 A. Thaliana Cobalamine Independent Methionine Synth 4e-59
3pph_A 789 Crystal Structure Of The Candida Albicans Methionin 1e-48
3pph_A789 Crystal Structure Of The Candida Albicans Methionin 6e-34
3ppf_A 789 Crystal Structure Of The Candida Albicans Methionin 1e-48
3ppf_A789 Crystal Structure Of The Candida Albicans Methionin 6e-34
3ppc_A 789 Crystal Structure Of The Candida Albicans Methionin 1e-48
3ppc_A789 Crystal Structure Of The Candida Albicans Methionin 5e-34
3l7r_A 779 Crystal Structure Of Mete From Streptococcus Mutans 1e-38
3l7r_A779 Crystal Structure Of Mete From Streptococcus Mutans 2e-36
2nq5_A 755 Crystal Structure Of Methyltransferase From Strepto 1e-38
2nq5_A755 Crystal Structure Of Methyltransferase From Strepto 2e-36
1t7l_A 766 Crystal Structure Of Cobalamin-Independent Methioni 1e-36
1t7l_A766 Crystal Structure Of Cobalamin-Independent Methioni 7e-31
1xr2_A 766 Crystal Structure Of Oxidized T. Maritima Cobalamin 1e-36
1xr2_A766 Crystal Structure Of Oxidized T. Maritima Cobalamin 7e-31
1xdj_A 766 Crystal Structure Of T. Maritima Cobalamin-Independ 5e-34
1xdj_A766 Crystal Structure Of T. Maritima Cobalamin-Independ 9e-29
1xpg_A 765 Crystal Structure Of T. Maritima Cobalamin-Independ 6e-34
1xpg_A765 Crystal Structure Of T. Maritima Cobalamin-Independ 9e-29
3rpd_A357 The Structure Of A B12-Independent Methionine Synth 1e-04
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 Back     alignment and structure 
Iteration: 1

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/225 (80%), Positives = 200/225 (88%)
Query: 2   ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNT 61
           ASHIVGYPR GPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQ S AG K+IPSNT
Sbjct: 2   ASHIVGYPRXGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQXSAAGTKFIPSNT 61
Query: 62  FSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIV 121
           F++YDQVLDTTA LGAVPPR+ + GGEIG DVYFS ARGNASV A E TKWFDTNYH+IV
Sbjct: 62  FAHYDQVLDTTAXLGAVPPRYGYTGGEIGLDVYFSXARGNASVPAXEXTKWFDTNYHYIV 121
Query: 122 PELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLL 181
           PELGP+V FSYASHKAV EYKEAK  GV+TVPVL+GPVSYLLLSK A GV+K+F +LSLL
Sbjct: 122 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 181
Query: 182 PKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSF 226
           PKILPIYKEV++ELKAAGA+WIQ DEP+LV DL+  KLQAF  ++
Sbjct: 182 PKILPIYKEVITELKAAGATWIQLDEPVLVXDLEGQKLQAFTGAY 226
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 Back     alignment and structure
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 Back     alignment and structure
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 Back     alignment and structure
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 Back     alignment and structure
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 Back     alignment and structure
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 Back     alignment and structure
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 Back     alignment and structure
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 Back     alignment and structure
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 Back     alignment and structure
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 Back     alignment and structure
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 Back     alignment and structure
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 Back     alignment and structure
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 Back     alignment and structure
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 Back     alignment and structure
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 Back     alignment and structure
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 Back     alignment and structure
>pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 Back     alignment and structure
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 Back     alignment and structure
>pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 Back     alignment and structure
>pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase From Shewanella Sp. W3-18-1 In Complex With Selenomethionine. Length = 357 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 1e-118
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 4e-74
1t7l_A 766 5-methyltetrahydropteroyltriglutamate-- homocystei 1e-111
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 5e-71
3ppg_A 789 5-methyltetrahydropteroyltriglutamate--homocystei 1e-111
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 3e-64
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 1e-108
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 9e-75
3rpd_A357 Methionine synthase (B12-independent); structural 4e-64
1ypx_A375 Putative vitamin-B12 independent methionine synth 5e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 Back     alignment and structure
 Score =  359 bits (924), Expect = e-118
 Identities = 200/337 (59%), Positives = 236/337 (70%), Gaps = 2/337 (0%)

Query: 1   MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
           MASHIVGYPRMGPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQMS AG K+IPSN
Sbjct: 1   MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60

Query: 61  TFSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFI 120
           TF++YDQVLDTTAMLGAVPPR+ + GGEIG DVYFSMARGNASV AMEMTKWFDTNYH+I
Sbjct: 61  TFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120

Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSL 180
           VPELGP+V FSYASHKAV EYKEAK  GV+TVPVL+GPVSYLLLSK A GV+K+F +LSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSL 180

Query: 181 LPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSF-RITNCGIQDTTQI 239
           LPKILPIYKEV++ELKAAGA+WIQ DEP+LVMDL+  KLQAF  ++  + +        +
Sbjct: 181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240

Query: 240 HTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPR 299
            T+                       +  R  + L  V + G      +  GV D  +  
Sbjct: 241 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLV-KAGFPEGKYLFAGVVDGRNIW 299

Query: 300 IPSTEEIVDRIYEMRTVLETNILWVNPDCGLKTRKYT 336
                  +  +  +  ++  + L V+  C L      
Sbjct: 300 ANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVD 336
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 100.0
1u1j_A 765 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
3rpd_A357 Methionine synthase (B12-independent); structural 100.0
1ypx_A375 Putative vitamin-B12 independent methionine synth 100.0
1u1j_A765 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
1t7l_A766 5-methyltetrahydropteroyltriglutamate-- homocystei 100.0
3ppg_A789 5-methyltetrahydropteroyltriglutamate--homocystei 99.97
2nq5_A755 5-methyltetrahydropteroyltriglutamate-- homocystei 99.96
2inf_A359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 99.74
1j93_A353 UROD, uroporphyrinogen decarboxylase; beta barrel, 99.7
3cyv_A354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 99.54
1r3s_A367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 99.52
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 99.44
4ay7_A348 Methylcobalamin\: coenzyme M methyltransferase; TI 99.4
4exq_A368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 99.26
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 94.97
3cu2_A237 Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib 94.41
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 94.39
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 94.2
1tx2_A297 DHPS, dihydropteroate synthase; folate biosynthesi 92.37
3k13_A300 5-methyltetrahydrofolate-homocysteine methyltrans; 92.35
1aj0_A282 DHPS, dihydropteroate synthase; antibiotic, resist 92.1
2yci_X271 5-methyltetrahydrofolate corrinoid/iron sulfur PR 91.97
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 91.53
1eye_A280 DHPS 1, dihydropteroate synthase I; alpha-beta bar 89.06
1tqx_A227 D-ribulose-5-phosphate 3-epimerase, putative; stru 87.87
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 86.67
3rhg_A365 Putative phophotriesterase; hydrolase, amidohydrol 86.48
3k2g_A364 Resiniferatoxin-binding, phosphotriesterase- relat 83.13
3o63_A243 Probable thiamine-phosphate pyrophosphorylase; thi 82.92
2ob3_A330 Parathion hydrolase; metalloenzyme, TIM barrel, ne 80.77
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
Probab=100.00  E-value=6.7e-78  Score=636.87  Aligned_cols=349  Identities=46%  Similarity=0.827  Sum_probs=302.7

Q ss_pred             CceeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCC
Q 016581            1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP   80 (387)
Q Consensus         1 ~~tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~   80 (387)
                      |+||++||||+|+.||||+|+|+||+|++|.++|.++.++.+.+.|+.|+++|||.|++|+|||||+|||++.+||.||+
T Consensus        24 ~~~~~lg~prig~~relk~a~e~yw~g~~~~~eL~~~~~~lr~~~w~~q~~aGid~ip~~dFs~YD~vLd~~~~~g~ip~  103 (789)
T 3ppg_A           24 VQSSVLGFPRIGGQRELKKITEAYWSGKATVEELLAKGKELREHNWKLQQKAGVDIIPSNDFSYYDQVLDLSLLFNAIPE  103 (789)
T ss_dssp             CCEECSCCCCSCTTCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred             HHHhhcCCCCcCCccHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEecCCCcchHHHHHHHHHhCCCch
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCcchhhhhhhhhcCC----------ccccccccccccCCcceecceeccCcccccC---CcccHHHHHHHHhC
Q 016581           81 RFNWNGGEIGFDVYFSMARGNA----------SVLAMEMTKWFDTNYHFIVPELGPDVKFSYA---SHKAVTEYKEAKGH  147 (387)
Q Consensus        81 r~~~~~~~~~~~~~F~~a~g~~----------~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~---~~~~~~~~~~ak~~  147 (387)
                      ||++.+ ..++++||+|+||..          ++++++|||||||||||+||++.+.+.|++.   .++++++|++|+++
T Consensus       104 r~~~~~-~~~l~~yf~~arg~~~~~~~~~~~~~~~a~eMtKWFdTNYHYiVPE~~~~~~f~l~~~~~~k~~~e~~eAk~~  182 (789)
T 3ppg_A          104 RYTKFD-LAPIDVLFAMGRGLQAAATATQAAVDVTALEMVKWFDSNYHYVRPTFSHSTEFKLNTAAGIKPVDEFNEAKAL  182 (789)
T ss_dssp             GGGSSC-CCHHHHHHHHHHCEEECC-----CEEECCCCEEECTTSSCEEECCEECTTCCCCCCGGGCCHHHHHHHHHHHT
T ss_pred             hhcccC-CCcHHHHHHHhcCCccccccccccCCcccccccccccCCCCeeceEECCCCCeeeccccchhHHHHHHHHHHc
Confidence            998543 357899999999964          6778999999999999999999999999998   78999999999999


Q ss_pred             CCCCCceeecHHHHHHhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHH--------
Q 016581          148 GVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKL--------  219 (387)
Q Consensus       148 g~~~k~~l~GP~tl~~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~--------  219 (387)
                      |+.+||+|+||+||+++++...+- ..+++.+++++|+++|.++++.|.++||.|||||||+|+.++++++.        
T Consensus       183 G~~~kpVl~GPvT~L~L~k~~~~~-~~~~~~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~~~~~~~~aY~  261 (789)
T 3ppg_A          183 GVQTRPVILGPVSYLYLGKADKDS-LDLEPISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEAVQSKFKEAYD  261 (789)
T ss_dssp             TCCCEEEEECHHHHHHTCEECGGG-TTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHTHHHHHHH
T ss_pred             CCCCCceeecHHHHHHHhcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHHHHHHHHHHHH
Confidence            999999999999999998732210 12477899999999999999999999999999999999999877532        


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       262 ~L~~~~~~kill~TYFg~~~~~l~~l~~lpV~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l~~l  341 (789)
T 3ppg_A          262 ALVGADVPELILTTYFGDVRPNLKAIENLPVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASAVV  341 (789)
T ss_dssp             HHCSTTSCEEEEECCSSCCGGGHHHHTTCCCSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHHHHH
T ss_pred             HHhhCCCCCEEEECCCCCHHHHHHHHHcCCCcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       342 ~~l~~~lg~~~l~vspScSLlHvP~~l~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (789)
T 3ppg_A          342 QKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSES  421 (789)
T ss_dssp             HHHHHHHCGGGEEEEESSCGGGSCSCGGGCSSSCHHHHTTBCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCeEEEeCCCCCCCCCcccccccCCCHHHHhhcchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       422 ~~~~~~~v~~r~~~~~~~~~~r~~~~~~r~~~q~~~~~lp~~ptt~VGSfPRp~~L~~aR~~~~~G~is~~el~~~~~~a  501 (789)
T 3ppg_A          422 SITNDPKVQERLTTINEALATRKAAFPERLTEQKAKYNLPLFPTTTIGSFPQTKDIRINRNKFAKGQITAEEYEAFINKE  501 (789)
T ss_dssp             SSSCCHHHHHHHHTCCTGGGSCSSCHHHHHHHHHHHHCCCSSCBBCCSCCCCCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHhCCHhhhccCCchHHHHHHHHHhcCCCCceeccccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 016581          220 --------------------------------------------------------------------------------  219 (387)
Q Consensus       220 --------------------------------------------------------------------------------  219 (387)
                                                                                                      
T Consensus       502 I~~vV~~Qe~~GLdvvtDGE~~R~d~v~~F~e~L~G~~~~~~g~vq~~g~r~~~~p~i~G~V~~~~p~~v~~~~~~qs~t  581 (789)
T 3ppg_A          502 IETVVRFQEEIGLDVLVHGEPERNDMVQYFGEQLNGFAFTTNGWVQSYGSRYVRPPIIVGDVSRPKAMTVKESVYAQSIT  581 (789)
T ss_dssp             HHHHHHHHHHHTCSBBCCCCTTCSCTTHHHHTTSEEEECCSSCCEEEETTEEECCCEEEEEEECCSCSSHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCeeeCCCccchhHHHHHHHhCCCeeEecCcceEecCCccccCCeeeccCCCCCCCcHHHHHHHHhhc
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------------------HHHHH
Q 016581          220 ---------------------------------------------------------------------------QAFIH  224 (387)
Q Consensus       220 ---------------------------------------------------------------------------~~a~~  224 (387)
                                                                                                 +++++
T Consensus       582 ~~pvK~~L~gP~ti~~~s~~r~~~~~ee~~~dlA~A~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r~g~d~~~~l~~av~  661 (789)
T 3ppg_A          582 SKPMKGMLTGPVTILRWSFPRDDVSGKIQALQLGLALRDEVNDLEGAGITVIQVDEPAIREGLPLRAGKERSDYLNWAAQ  661 (789)
T ss_dssp             SSCBEEEEECHHHHHHTSBCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTGGGSCSSSSHHHHHHHHHHHH
T ss_pred             cCCCceeccchHhHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhcccccccCCHHHHHHHHHH
Confidence                                                                                       03799


Q ss_pred             HHHHHHcCCCCCceEEEEecCCCchhHHHHHHcCCCCEEEEe-cCCCChhhhHHhhhccCCCcccccccccCCCCCCCCH
Q 016581          225 SFRITNCGIQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIE-NSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPST  303 (387)
Q Consensus       225 ~~~~~~~~~~~~~~v~lH~C~gn~~~i~~~l~~l~vD~i~lE-~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~  303 (387)
                      ++|.+++++|++++|++|+|||||..  +.|.++++|+|+|| ++|+++++|+.+++   +++.|++||||++++.+|++
T Consensus       662 a~n~a~~g~p~d~~I~tHiC~Gnf~~--~~I~~l~aD~islE~~~Rs~~e~L~~~~~---~~k~V~lGVvds~sp~vEs~  736 (789)
T 3ppg_A          662 SFRVATSGVENSTQIHSHFCYSDLDP--NHIKALDADVVSIEFSKKDDPNYIQEFSE---YPNHIGLGLFDIHSPRIPSK  736 (789)
T ss_dssp             HHHHHHSSSCTTSEEEEECC---CCH--HHHHHHCCSEEEEC---------CGGGGG---CCSEEEEC-------CCCCH
T ss_pred             HHHHHHhcCCCCcEEEEeccCCCCCh--hHHHhCCCCEEEEecCCCcchHHHHHHHh---cCCeEEeeeecCCCCCCCCH
Confidence            99999999999999999999999987  89999999999999 77878899988876   36799999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 016581          304 EEIVDRIYEMRTVLETNILWVNPDCGLKTRKYTEVKPALSNMVAATKLLRTQL  356 (387)
Q Consensus       304 e~v~~ri~~a~~~v~~~~l~isPdCGl~~~~~~~a~~kL~~lv~~a~~~r~~l  356 (387)
                      |+|++||+++++++|++++||||||||++++++++++||++|+++|+.+|++|
T Consensus       737 EeV~~rI~~a~~~v~~erL~lsPdCGl~t~~~~~a~akL~~mveaAk~lR~~~  789 (789)
T 3ppg_A          737 QEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAKY  789 (789)
T ss_dssp             HHHHHHHHHHTTTSCGGGEEECCSCC---CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999985
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Back     alignment and structure
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Back     alignment and structure
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Back     alignment and structure
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Back     alignment and structure
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... Back     alignment and structure
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A Back     alignment and structure
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 Back     alignment and structure
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} Back     alignment and structure
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1u1ha1394 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu 1e-116
d1u1ha2365 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig 1e-69
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  342 bits (879), Expect = e-116
 Identities = 202/332 (60%), Positives = 238/332 (71%), Gaps = 6/332 (1%)

Query: 2   ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNT 61
           ASHIVGYPRMGPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQMS AG K+IPSNT
Sbjct: 1   ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNT 60

Query: 62  FSYYDQVLDTTAMLGAVPPRFNWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIV 121
           F++YDQVLDTTAMLGAVPPR+ + GGEIG DVYFSMARGNASV AMEMTKWFDTNYH+IV
Sbjct: 61  FAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIV 120

Query: 122 PELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYLLLSKPAWGVEKTFSVLSLL 181
           PELGP+V FSYASHKAV EYKEAK  GV+TVPVL+GPVSYLLLSK A GV+K+F +LSLL
Sbjct: 121 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 180

Query: 182 PKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAF---IHSFRITNCGIQDTTQ 238
           PKILPIYKEV++ELKAAGA+WIQ DEP+LVMDL+  KLQAF         T  G+    +
Sbjct: 181 PKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240

Query: 239 IHTHMCYSNFNDIIHSIIDMDADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSP 298
            +     +     + S+  + A     +  R  + L  V   G      +  GV D  + 
Sbjct: 241 TYFADIPAEAYKTLTSLKGVTA--FGFDLVRGTKTLDLVK-AGFPEGKYLFAGVVDGRNI 297

Query: 299 RIPSTEEIVDRIYEMRTVLETNILWVNPDCGL 330
                   +  +  +  ++  + L V+  C L
Sbjct: 298 WANDFAASLSTLQALEGIVGKDKLVVSTSCSL 329
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1u1ha1394 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1u1ha2365 5-methyltetrahydropteroyltriglutamate--homocystein 100.0
d1r3sa_356 Uroporphyrinogen decarboxylase, UROD {Human (Homo 99.21
d1j93a_343 Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic 99.2
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 92.22
d1rpxa_230 D-ribulose-5-phosphate 3-epimerase {Potato (Solanu 89.25
d3bofa1260 Cobalamin-dependent methionine synthase MetH, C-te 85.55
d1f6ya_262 Methyltetrahydrofolate: corrinoid/iron-sulfur prot 80.92
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Cobalamin-independent methionine synthase
domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-74  Score=573.69  Aligned_cols=361  Identities=55%  Similarity=0.870  Sum_probs=306.6

Q ss_pred             eeeccCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccchhhhhHHHhhCCCCCCc
Q 016581            3 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRF   82 (387)
Q Consensus         3 tt~vG~PR~g~~~eL~~a~e~~~~g~i~~~~l~~~~~~~~~~~v~~Q~~aGld~itdGef~~~d~vld~~~~~~~v~~r~   82 (387)
                      ||++||||||+.||||+|+|+||+|+||.++|+++.+++++++|+.|+++|||+||||||||||||+|++++||++|+||
T Consensus         2 ~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~Rf   81 (394)
T d1u1ha1           2 SHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRY   81 (394)
T ss_dssp             BBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGGG
T ss_pred             CCcCcCCCCCCchHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeccCCccchHHHHHHHHHcCCccccc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcchhhhhhhhhcCCccccccccccccCCcceecceeccCcccccCCcccHHHHHHHHhCCCCCCceeecHHHHH
Q 016581           83 NWNGGEIGFDVYFSMARGNASVLAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGHGVETVPVLIGPVSYL  162 (387)
Q Consensus        83 ~~~~~~~~~~~~F~~a~g~~~~~~~~~~k~f~tny~y~~P~i~~~~~~~~~~~~~~~~~~~ak~~g~~~k~~l~GP~tl~  162 (387)
                      ++..+..++++||+++||..++++++|+|||||||||++|++.+.+.+++..++++++|+++++.|+.+||+|+||+|++
T Consensus        82 ~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~l  161 (394)
T d1u1ha1          82 GYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYL  161 (394)
T ss_dssp             CCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHHH
T ss_pred             ccccccccHHHHHHHHhcCCcccccccccccCCCCCccCCccCCCccccccchhHHHHHHHHhhcCCccccccCCHHHHH
Confidence            98777678999999999988899999999999999999999999999998888999999999999999999999999999


Q ss_pred             HhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCcccccCCChHHHHHHHHHHHHHHcCCCCCceEEEE
Q 016581          163 LLSKPAWGVEKTFSVLSLLPKILPIYKEVVSELKAAGASWIQFDEPLLVMDLDSHKLQAFIHSFRITNCGIQDTTQIHTH  242 (387)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~la~~~~~~i~~L~~aG~~~IQiDEP~l~~~l~~~~~~~a~~~~~~~~~~~~~~~~v~lH  242 (387)
                      .+++...+....+++.+++++|+++|++++++|.++||+|||||||+|+.++++++.+.+.++++.+....+ +..+.+|
T Consensus       162 ~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~-~~~i~l~  240 (394)
T d1u1ha1         162 LLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLS-GLNVLVE  240 (394)
T ss_dssp             HTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTT-TSEEEEE
T ss_pred             HHhcccCCCccccCHHHHHHHHHHHHHHHHHHHHhccCCEEEeeccchhccCCHHHHHHHHHHHHHHHhhcC-CCCceEE
Confidence            988643332112278899999999999999999999999999999999999888877777788877766654 4689999


Q ss_pred             ecCCCch-hHHHHHHcC-CCCEEEEecCCCChhhhHHhhhccCCCcccccccccCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 016581          243 MCYSNFN-DIIHSIIDM-DADVITIENSRSNENLLSVFREGVQYDAAIGPGVYDIHSPRIPSTEEIVDRIYEMRTVLETN  320 (387)
Q Consensus       243 ~C~gn~~-~i~~~l~~l-~vD~i~lE~~r~~~e~L~~~~~~~~~~k~l~lGvvd~~s~~ve~~e~v~~ri~~a~~~v~~~  320 (387)
                      +|+|++. ...+.+... +||++++|..+.+......+.. ++.+|.|++||||++|+++|+++++++||+++.+++|++
T Consensus       241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~-~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~e  319 (394)
T d1u1ha1         241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAG-FPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKD  319 (394)
T ss_dssp             CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHC-CCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSS
T ss_pred             eccCCCchhhHHHHhhcCCCCeeEEEeecCccchHHHHHh-CCcccEEEeeeEecCCCCcCCHHHHHHHHHHHHHhCCcc
Confidence            9999974 567777665 6999999977653222222222 555899999999999999999999999999999999999


Q ss_pred             cEEEcCCCCCCCCChhhH-----HHHHHHHHHHHHHHHHHhCCCcc-ccCC
Q 016581          321 ILWVNPDCGLKTRKYTEV-----KPALSNMVAATKLLRTQLTVPRR-LEGS  365 (387)
Q Consensus       321 ~l~isPdCGl~~~~~~~a-----~~kL~~lv~~a~~~r~~l~~~~~-~~~~  365 (387)
                      ||||+|||||-+.|.+..     ...++.....|++--+|+..+++ |+++
T Consensus       320 rl~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~  370 (394)
T d1u1ha1         320 KLVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQ  370 (394)
T ss_dssp             CEEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEeCCCCCcCCCCcCccccCCCHHHHhhhchHHHHHHHHHHHHHHHcCC
Confidence            999999999987765431     12333333334444444444444 4443
>d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure