Citrus Sinensis ID: 016586

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------

MDVRRRPLKVDDEVNKEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILLSVTNEIWLCLLVSSCMS

cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcEEEEccEEEccEEEEEcccccccHHHHHcHHHHHHHHHcccEEEEEccccEEEcEEEEEccHHHHHHHHHHHcccccHHHHHHHHccccccEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHcEEEccccEEEEEEEEEccccc

ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHcccHEHccccccccccccccccccccccccccHHcccccccccHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHcccccccHHHHcccccccEEEEEEEEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEccEEEcccHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEEEccEccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccc

mdvrrrplkvddevnkekrptsptpkasdalplplyltnAIFFTLFFSVAYYLLHRWRekirnstplhVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRatpeawdleeddsdiisrppapisittlssaqdedvVQSVidgsipsyalesklGDCRRAAAIRREALQKMTgrslqglpldgfdydsilgqccempvgyvqipvgiagpllldgfeysvpmattegclvastnrgckaiyasGGAASMLLRDGMTRAPIVRFASAMRASELKFfledpnnfETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTtgdamgmnMVSKGVQNVLDFLqndfpdmdvigISGMCLVIYLKSCSYILLSVTNEIWLCLLVSSCMS

mdvrrrplkvddevnkekrptsptpkasdalplPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTlssaqdedVVQSVIDGSipsyalesklgDCRRAAAIRREALQkmtgrslqglpLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIqcsiagknlYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILLSVTNEIWLCLLVSSCMS

******************************LPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDL***************************VVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILLSVTNEIWLCLLVS****

**********************************LYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFV****************************************DVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILLSVTNEIWLCLLVSSCM*

MDVRRRPLKVDD**************ASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSDIISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILLSVTNEIWLCLLVSSCMS

***************************SDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFIS***************IISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSYILLSVTNEIWLCLLVSSC*S

oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		387	2.2.26 [Sep-21-2011]
P29057		575	3-hydroxy-3-methylglutary	N/A	no	0.873	0.587	0.762	1e-163
P14891		592	3-hydroxy-3-methylglutary	yes	no	0.917	0.599	0.700	1e-159
Q41438		574	3-hydroxy-3-methylglutary	N/A	no	0.917	0.618	0.678	1e-152
Q01559		604	3-hydroxy-3-methylglutary	N/A	no	0.912	0.584	0.652	1e-151
P48020		596	3-hydroxy-3-methylglutary	N/A	no	0.914	0.593	0.649	1e-151
P48021		593	3-hydroxy-3-methylglutary	N/A	no	0.917	0.598	0.663	1e-148
Q03163		601	3-hydroxy-3-methylglutary	N/A	no	0.914	0.589	0.637	1e-148
Q9XEL8		604	3-hydroxy-3-methylglutary	N/A	no	0.909	0.582	0.631	1e-148
O64966		585	3-hydroxy-3-methylglutary	N/A	no	0.917	0.606	0.664	1e-148
P48022		602	3-hydroxy-3-methylglutary	N/A	no	0.914	0.588	0.642	1e-148

>sp\|P29057\|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1	Back alignment and function desciption

 Score =  574 bits (1480), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/366 (76%), Positives = 315/366 (86%), Gaps = 28/366 (7%)

Query: 16  KEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEI 75
           +++ PT  TPKASDALPLPLYLTNA+FFTLFFSVAYYLLHRWR+KIRNSTPLH+VTLSEI
Sbjct: 17  EDRSPT--TPKASDALPLPLYLTNAVFFTLFFSVAYYLLHRWRDKIRNSTPLHIVTLSEI 74

Query: 76  AAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEE--------DDSDIISRPPAPIS 127
            AIVSLIASFIYLLGFFGIDFVQSFI+RA+ + WDLE+        +D  +++ PPA IS
Sbjct: 75  VAIVSLIASFIYLLGFFGIDFVQSFIARASHDVWDLEDTDPNYLIDEDHRLVTCPPANIS 134

Query: 128 ITT------------------LSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRRE 169
             T                  L S +DE +V SV+DG IPSY+LESKLGDC+RAAAIRRE
Sbjct: 135 TKTTIIAAPTKLPTSEPLIAPLVSEEDEMIVNSVVDGKIPSYSLESKLGDCKRAAAIRRE 194

Query: 170 ALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTE 229
           ALQ+MT RSL+GLP++GFDY+SILGQCCEMPVGYVQIPVGIAGPLLL+G EYSVPMATTE
Sbjct: 195 ALQRMTRRSLEGLPVEGFDYESILGQCCEMPVGYVQIPVGIAGPLLLNGREYSVPMATTE 254

Query: 230 GCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289
           GCLVASTNRGCKAIY SGGA S+LL+DGMTRAP+VRFASA RA+ELKFFLEDP+NF+TLA
Sbjct: 255 GCLVASTNRGCKAIYLSGGATSVLLKDGMTRAPVVRFASATRAAELKFFLEDPDNFDTLA 314

Query: 290 VVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349
           VVFN+SSRFARLQ I+CSIAGKNLYIRF C+TGDAMGMNMVSKGVQNVL+FLQ+DF DMD
Sbjct: 315 VVFNKSSRFARLQGIKCSIAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLEFLQSDFSDMD 374

Query: 350 VIGISG 355
           VIGISG
Sbjct: 375 VIGISG 380

Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants.
Hevea brasiliensis (taxid: 3981)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 4

>sp\|P14891\|HMDH1_ARATH 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Arabidopsis thaliana GN=HMG1 PE=1 SV=1	Back alignment and function description

>sp\|Q41438\|HMDH3_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 OS=Solanum tuberosum GN=HMG3 PE=2 SV=1	Back alignment and function description

>sp\|Q01559\|HMDH_NICSY 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris GN=HMGR PE=2 SV=1	Back alignment and function description

>sp\|P48020\|HMDH1_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Solanum tuberosum GN=HMG1 PE=2 SV=1	Back alignment and function description

>sp\|P48021\|HMDH_CAMAC 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Camptotheca acuminata PE=3 SV=1	Back alignment and function description

>sp\|Q03163\|HMDH_CATRO 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Catharanthus roseus GN=HMGR PE=2 SV=1	Back alignment and function description

>sp\|Q9XEL8\|HMDH2_CAPAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Capsicum annuum GN=HMGR2 PE=2 SV=1	Back alignment and function description

>sp\|O64966\|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1	Back alignment and function description

>sp\|P48022\|HMDH2_SOLLC 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Solanum lycopersicum GN=HMG2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		387
357240555		564	3-hydroxy-3-methylglutaryl coenzyme A re	0.914	0.627	0.786	1e-171
357593593		562	3-hydroxy-3-methylglutaryl coenzyme A re	0.917	0.631	0.803	1e-171
255539334		576	hmg-CoA reductase, putative [Ricinus com	0.891	0.598	0.775	1e-166
4140371		548	3-hydroxy-3-methylglutaryl-coenzyme A re	0.896	0.633	0.772	1e-164
343466155		582	HMG-CoA reductase [Siraitia grosvenorii]	0.875	0.582	0.784	1e-161
123335		575	RecName: Full=3-hydroxy-3-methylglutaryl	0.873	0.587	0.762	1e-161
164604972		575	hydroxymethylglutaryl-CoA reductase [Hev	0.873	0.587	0.762	1e-161
449458053		590	PREDICTED: 3-hydroxy-3-methylglutaryl-co	0.878	0.576	0.763	1e-161
4107037		587	HMG-CoA reductase [Cucumis melo] gi\|2698	0.857	0.565	0.778	1e-160
297839521		635	3-hydroxy-3-methylglutaryl CoA reductase	0.917	0.559	0.706	1e-160

>gi\|357240555\|gb\|AET72044.1\| 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 [Dimocarpus longan]	Back alignment and taxonomy information

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 291/370 (78%), Positives = 330/370 (89%), Gaps = 16/370 (4%)

Query: 1   MDVRRRPLKVDDEVNKEKRPTSPTP---KASDALPLPLYLTNAIFFTLFFSVAYYLLHRW 57
           MDVRRRP K     + E+R T+P+P   KASDALPLPLYLTNAIFFTLFFSVAY+LLHRW
Sbjct: 1   MDVRRRPPKPSRVADDEQRTTTPSPQSPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRW 60

Query: 58  REKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAWDLEEDDSD 117
           R+KIR+STPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRA+ +AWDL+++ + 
Sbjct: 61  RDKIRSSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRASNDAWDLDDEAAT 120

Query: 118 IISR------------PPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAA 165
           +I+             PP PI I+ LSS +DE +V+SV+DGSIPS++LESKLGDC+RAA 
Sbjct: 121 VIAARPPPTPLPKLVAPPEPI-ISVLSSVEDEKIVKSVVDGSIPSHSLESKLGDCKRAAL 179

Query: 166 IRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPM 225
           IRR+ALQ +TGRSLQGLPLDGFDY+SI GQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPM
Sbjct: 180 IRRKALQTVTGRSLQGLPLDGFDYESIQGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPM 239

Query: 226 ATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNF 285
           ATTEGCLVAS NRGC+AIYASGGA+++LL+DGMTRAP+VRF++A RA+ELKFFLEDPNNF
Sbjct: 240 ATTEGCLVASANRGCRAIYASGGASTVLLKDGMTRAPVVRFSTAKRAAELKFFLEDPNNF 299

Query: 286 ETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDF 345
           +TLAVVFNRSSR ARL+ IQCSIAGKNLY RFCC+TGDAMGMNMVSKGVQNVLDFLQND+
Sbjct: 300 DTLAVVFNRSSRLARLRSIQCSIAGKNLYTRFCCSTGDAMGMNMVSKGVQNVLDFLQNDY 359

Query: 346 PDMDVIGISG 355
           PDMDVIGISG
Sbjct: 360 PDMDVIGISG 369

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357593593\|gb\|ABF56518.2\| 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 [Litchi chinensis]	Back alignment and taxonomy information

>gi\|255539334\|ref\|XP_002510732.1\| hmg-CoA reductase, putative [Ricinus communis] gi\|223551433\|gb\|EEF52919.1\| hmg-CoA reductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|4140371\|gb\|AAD03789.1\| 3-hydroxy-3-methylglutaryl-coenzyme A reductase [Morus alba]	Back alignment and taxonomy information

>gi\|343466155\|gb\|AEM42971.1\| HMG-CoA reductase [Siraitia grosvenorii]	Back alignment and taxonomy information

>gi|123335|sp|P29057.1|HMDH1_HEVBR RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 gi|16417954|gb|AAL18929.1|AF429388_1 hydroxymethylglutaryl coenzyme A reductase [Hevea brasiliensis] gi|18833|emb|CAA38467.1| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis] gi|18835|emb|CAA38469.1| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis] gi|34223773|gb|AAQ63055.1| 3-hydroxy-3-methylglutaryl-coenzyme A reductase [Hevea brasiliensis]

Back alignment and taxonomy information

>gi\|164604972\|dbj\|BAF98282.1\| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]	Back alignment and taxonomy information

>gi\|449458053\|ref\|XP_004146762.1\| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucumis sativus] gi\|449527801\|ref\|XP_004170898.1\| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|4107037\|dbj\|BAA36291.1\| HMG-CoA reductase [Cucumis melo] gi\|269851485\|gb\|ACZ50511.1\| 3-hydroxy-3-methylglutaryl coenzyme-A reductase [Cucumis melo]	Back alignment and taxonomy information

>gi\|297839521\|ref\|XP_002887642.1\| 3-hydroxy-3-methylglutaryl CoA reductase [Arabidopsis lyrata subsp. lyrata] gi\|297333483\|gb\|EFH63901.1\| 3-hydroxy-3-methylglutaryl CoA reductase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		387
TAIR\|locus:2827622		562	HMG2 "3-hydroxy-3-methylglutar	0.909	0.626	0.655	2.4e-122
DICTYBASE\|DDB_G0269142		552	hmgA "hmg CoA reductase A" [Di	0.635	0.445	0.489	1.3e-61
ZFIN\|ZDB-GENE-040401-2		884	hmgcra "3-hydroxy-3-methylglut	0.568	0.248	0.518	2.6e-57
UNIPROTKB\|F1S2I4		887	HMGCR "3-hydroxy-3-methylgluta	0.635	0.277	0.476	2.7e-57
UNIPROTKB\|F1P2Y5		875	HMGCR "Uncharacterized protein	0.568	0.251	0.540	2.9e-57
UNIPROTKB\|E1C420		883	HMGCR "Uncharacterized protein	0.568	0.249	0.540	3.3e-57
UNIPROTKB\|A7Z064		888	HMGCR "3-hydroxy-3-methylgluta	0.568	0.247	0.518	7.6e-57
MGI\|MGI:96159		887	Hmgcr "3-hydroxy-3-methylgluta	0.568	0.248	0.518	3.5e-56
UNIPROTKB\|P00347		887	HMGCR "3-hydroxy-3-methylgluta	0.671	0.293	0.466	5.9e-56
SGD\|S000004540		1054	HMG1 "HMG-CoA reductase" [Sacc	0.630	0.231	0.478	9.7e-56

TAIR\|locus:2827622 HMG2 "3-hydroxy-3-methylglutaryl-CoA reductase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 240/366 (65%), Positives = 291/366 (79%)

Query:     2 DVRRR-PLKVDDEVNKEKRPTSPTPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREK 60
             D+RRR P K + E         P  KASDALPLPLYLTN  F +LFF+  Y+LL RWREK
Sbjct:     3 DLRRRFPTKKNGEEISNVAVDPPLRKASDALPLPLYLTNTFFLSLFFATVYFLLSRWREK 62

Query:    61 IRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFISRATPEAW---DLEEDDSD 117
             IRNSTPLHVV LSEI A++  +ASFIYLLGF GID +  F S +  + W    +   +  
Sbjct:    63 IRNSTPLHVVDLSEICALIGFVASFIYLLGFCGIDLI--FRSSSDDDVWVNDGMIPCNQS 120

Query:   118 IISRPPAPI---SI-----TTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRRE 169
             +  R   PI   S+     + L S +DE++V+ VIDG+IPSY+LE+KLGDC+RAAAIRRE
Sbjct:   121 LDCREVLPIKPNSVDPPRESELDSVEDEEIVKLVIDGTIPSYSLETKLGDCKRAAAIRRE 180

Query:   170 ALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTE 229
             A+Q++TG+SL GLPL+GFDY+SILGQCCEMPVGYVQIPVGIAGPLLLDG EYSVPMATTE
Sbjct:   181 AVQRITGKSLTGLPLEGFDYNSILGQCCEMPVGYVQIPVGIAGPLLLDGVEYSVPMATTE 240

Query:   230 GCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289
             GCLVASTNRG KAI+ SGGA S+L++D MTRAP+VRF SA RA+ + F+L+DP+NFE L+
Sbjct:   241 GCLVASTNRGFKAIHLSGGAFSVLVKDAMTRAPVVRFPSARRAALVMFYLQDPSNFERLS 300

Query:   290 VVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349
             ++FN+SSRFARLQ I C+IAG+NLY RF C+TGDAMGMNMVSKGVQNVLDF++++FPDMD
Sbjct:   301 LIFNKSSRFARLQSITCTIAGRNLYPRFACSTGDAMGMNMVSKGVQNVLDFVKSEFPDMD 360

Query:   350 VIGISG 355
             VIGISG
Sbjct:   361 VIGISG 366

GO:0004420 "hydroxymethylglutaryl-CoA reductase (NADPH) activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS

GO:0015936 "coenzyme A metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016104 "triterpenoid biosynthetic process" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=IMP

GO:0042282 "hydroxymethylglutaryl-CoA reductase activity" evidence=ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

DICTYBASE\|DDB_G0269142 hmgA "hmg CoA reductase A" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040401-2 hmgcra "3-hydroxy-3-methylglutaryl-Coenzyme A reductase a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S2I4 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2Y5 HMGCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C420 HMGCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A7Z064 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:96159 Hmgcr "3-hydroxy-3-methylglutaryl-Coenzyme A reductase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P00347 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Cricetulus griseus (taxid:10029)]	Back alignment and assigned GO terms

SGD\|S000004540 HMG1 "HMG-CoA reductase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14891	HMDH1_ARATH	1, ., 1, ., 1, ., 3, 4	0.7007	0.9173	0.5996	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
3rd Layer	1.1.1.34	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_2001603	annotation not avaliable (635 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.6__2716__AT5G27450.1	annotation not avaliable (378 aa)	•	•		•	•	0.791
	scaffold_603613.1	annotation not avaliable (461 aa)	•		•	•	•	0.751
	fgenesh2_kg.4__1941__AT2G38700.1	annotation not avaliable (412 aa)	•	•			•	0.432
	scaffold_502535.1	annotation not avaliable (419 aa)	•	•			•	0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		387
cd00643		403	cd00643, HMG-CoA_reductase_classI, Class I hydroxy	1e-115
pfam00368		370	pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coen	1e-97
TIGR00920		889	TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co	2e-81
TIGR00533		402	TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylgluta	2e-76
COG1257		436	COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase	7e-71
cd00365		376	cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl-	5e-38
TIGR00532		393	TIGR00532, HMG_CoA_R_NAD, hydroxymethylglutaryl-Co	9e-11
cd00644		417	cd00644, HMG-CoA_reductase_classII, Class II hydro	1e-08

>gnl\|CDD\|153081 cd00643, HMG-CoA_reductase_classI, Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

 Score =  340 bits (874), Expect = e-115
 Identities = 119/226 (52%), Positives = 157/226 (69%), Gaps = 7/226 (3%)

Query: 137 EDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQC 196
           E+++  +  G I  Y LE  L D  RA  IRR  L+K TG+SL+ LP   +DY  +LG+ 
Sbjct: 1   EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRN 60

Query: 197 CEMPVGYVQIPVGIAGPLLLDGF----EYSVPMATTEGCLVASTNRGCKAIYASGGAASM 252
            E  +GYVQ+PVG+AGPLL++G     E+ VPMATTEG LVASTNRGCKAI  SGGA + 
Sbjct: 61  IENVIGYVQVPVGVAGPLLINGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTR 120

Query: 253 LLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKN 312
           +L DGMTRAP+ RF SA  A+E K ++E+  NFE +  V   +SR ARLQ I+  IAG++
Sbjct: 121 VLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVAESTSRHARLQSIKPYIAGRS 178

Query: 313 LYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISG-MC 357
           +Y+RF  TTGDAMGMNMV+K  +   D+++ +FPDM+VI +SG  C
Sbjct: 179 VYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFC 224

Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture. Length = 403

>gnl\|CDD\|201184 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase	Back alignment and domain information

>gnl\|CDD\|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Back alignment and domain information

>gnl\|CDD\|129624 TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP)	Back alignment and domain information

>gnl\|CDD\|224177 COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|153080 cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>gnl\|CDD\|129623 TIGR00532, HMG_CoA_R_NAD, hydroxymethylglutaryl-CoA reductase, degradative	Back alignment and domain information

>gnl\|CDD\|153082 cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		387
KOG2480		602	consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA)	100.0
cd00643		403	HMG-CoA_reductase_classI Class I hydroxymethylglut	100.0
TIGR00920		886	2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red	100.0
TIGR00533		402	HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme	100.0
COG1257		436	HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid me	100.0
PF00368		373	HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A redu	100.0
cd00644		417	HMG-CoA_reductase_classII Class II hydroxymethylgl	100.0
TIGR00532		393	HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase,	100.0
cd00365		376	HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A	100.0

>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3e-102  Score=790.25  Aligned_cols=355  Identities=55%  Similarity=0.824  Sum_probs=328.1

Q ss_pred             CCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHhH--hhhhcCCCccccchHHHHHHHHH-HHHHHHHHhhcCccccccc
Q 016586           24 TPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWR--EKIRNSTPLHVVTLSEIAAIVSL-IASFIYLLGFFGIDFVQSF  100 (387)
Q Consensus        24 ~~~~~~~lplp~~~~n~~~~~~f~~~~~~l~~~wr--~kir~s~plh~~~~~e~~~~~~~-~as~~yl~~ffgi~~~~~~  100 (387)
                      ..++++.+|||+|+++..|+.|||+++|+++++|+  +|+|.|+|||++++++..+.... |++++|+++|++|+++|++
T Consensus        42 ~~~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  121 (602)
T KOG2480|consen   42 VCKASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSV  121 (602)
T ss_pred             cchhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhc
Confidence            45789999999999999999999999999999999  99999999999999999998888 9999999999999999999


Q ss_pred             cCCCCCccCCcccCCCc----cc--cCCCCC-c---------cccc-CCCCCHHHHHHHHHcCCCCccccccccCChHHH
Q 016586          101 ISRATPEAWDLEEDDSD----II--SRPPAP-I---------SITT-LSSAQDEDVVQSVIDGSIPSYALESKLGDCRRA  163 (387)
Q Consensus       101 ~~~~~~~~~~~~~~~~~----~~--~~~~~~-~---------~~~~-~~~~~deei~~~v~~g~i~~y~LE~~l~d~~rA  163 (387)
                      +++...+.|..+..-.+    ..  +.++.| .         +... .-+.+|+||++.|..|++|+|+||++|+|++||
T Consensus       122 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~l~~~~~~~~~g~~~~~~~d~Eiv~lv~~G~~p~y~lEs~l~d~~Ra  201 (602)
T KOG2480|consen  122 ISDDDVESWVTDRTILCVSGRLVTFPSIPKPIRPLLEILNLFPSGQEVKSLSDEEIVQLVIAGKIPLYALESKLGDAERA  201 (602)
T ss_pred             cccccccccccccccccCCCcccccCCCCCCccchhhhcccCccccccccCChHHHHHHhhcCcccceeccccccchhhh
Confidence            98887778876544211    11  222211 1         0111 245689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCccC---CCCCCCCChhhhhhcccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHHhhhhh
Q 016586          164 AAIRREALQKMTGRSLQ---GLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGC  240 (387)
Q Consensus       164 v~iRR~~l~~~tg~sL~---~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVAGPLlInG~ey~VPMATtEgsLVASanRGa  240 (387)
                      +.+||++|.+.++.+..   .||+++|||+.+.|+||||+|||+||||||||||+|||++|||||||||||||||+||||
T Consensus       202 v~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~VPMATTEGaLVAStnRGc  281 (602)
T KOG2480|consen  202 VSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYYVPMATTEGALVASTNRGC  281 (602)
T ss_pred             HHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEEeeeccccchhhHhhccch
Confidence            99999999999998776   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhhcCCcceeeEEEEecCCeEEEEEEee
Q 016586          241 KAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCT  320 (387)
Q Consensus       241 KaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~van~tSR~GgL~~I~~~i~G~~l~lrf~~d  320 (387)
                      |+|+.+||+++++.+|||||+|++||+++.||.++|.||+.||||+.|+++||++|||+|||+|++.++|+++|+||...
T Consensus       282 KaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq~i~~~iaG~~lyiRF~~~  361 (602)
T KOG2480|consen  282 KAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQSIHTTIAGRNLYIRFCTS  361 (602)
T ss_pred             hheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhheeeEEeecceeEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccce----eEEEeeeeeeeeh
Q 016586          321 TGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSC----SYILLSVTNEIWL  378 (387)
Q Consensus       321 TGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A----~~~~~~v~~e~~~  378 (387)
                      ||||||||||+|++|+++.+|.++||||+|++||||||||+++.|    +=|+.||-.|+-|
T Consensus       362 TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~I  423 (602)
T KOG2480|consen  362 TGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATI  423 (602)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEec
Confidence            999999999999999999999999999999999999999999987    4578899888866

>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Back alignment and domain information

>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP)	Back alignment and domain information

>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]	Back alignment and domain information

>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase	Back alignment and domain information

>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative	Back alignment and domain information

>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		387
1dq8_A		467	Complex Of The Catalytic Portion Of Human Hmg-Coa R		3e-60
2q1l_A		441	Design And Synthesis Of Pyrrole-Based, Hepatoselect		4e-60

>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa Reductase With Hmg And Coa Length = 467

Back alignment and structure

Iteration: 1

Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 148/222 (66%), Gaps = 2/222 (0%) Query: 136 DEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGR--SLQGLPLDGFDYDSIL 193 D +++Q V IP+Y LE+ + R +IRR+ L K SLQ LP ++Y ++ Sbjct: 43 DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVM 102 Query: 194 GQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASML 253 G CCE +GY+ IPVG+AGPL LD E+ VPMATTEGCLVASTNRGC+AI GGA+S + Sbjct: 103 GACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRV 162 Query: 254 LRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNL 313 L DGMTR P+VR A ++E+K +LE F + F+ +SRFARLQ + SIAG+NL Sbjct: 163 LADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNL 222 Query: 314 YIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISG 355 YIRF +GDAMGMNM+SKG + L L FP+M ++ +SG Sbjct: 223 YIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSG 264

PyMOL of 1dq8

>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors Length = 441

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		387
2r4f_A		441	3-hydroxy-3-methylglutaryl-coenzyme A reductase; o	7e-92
3qae_A		458	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	1e-69
1r31_A		428	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	1e-61

>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... Length = 441	Back alignment and structure

 Score =  282 bits (722), Expect = 7e-92
 Identities = 114/245 (46%), Positives = 153/245 (62%), Gaps = 7/245 (2%)

Query: 113 EDDSDIISRPPAPISITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQ 172
           E+   I+          +     D +++Q V    IP+Y LE+ +    R  +IRR+ L 
Sbjct: 12  EECLQILGNAEKGAKFLS-----DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLS 66

Query: 173 KMTGR--SLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEG 230
           K      SLQ LP   ++Y  ++G CCE  +GY+ IPVG+AGPL LD  E+ VPMATTEG
Sbjct: 67  KKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEG 126

Query: 231 CLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290
           CLVASTNRGC+AI   GGA+S +L DGMTR P+VR   A  ++E+K +LE    F  +  
Sbjct: 127 CLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE 186

Query: 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350
            F+ +SRFARLQ +  SIAG+NLYIRF   +GDAMGMNM+SKG +  L  L   FP+M +
Sbjct: 187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQI 246

Query: 351 IGISG 355
           + +SG
Sbjct: 247 LAVSG 251

PyMOL of 2r4f

>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A Length = 458	Back alignment and structure

>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A* Length = 428	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		387
2r4f_A		441	3-hydroxy-3-methylglutaryl-coenzyme A reductase; o	100.0
1r31_A		428	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	100.0
3qae_A		458	3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4	100.0

>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...	Back alignment and structure

Probab=100.00  E-value=2.9e-78  Score=610.88  Aligned_cols=246  Identities=47%  Similarity=0.763  Sum_probs=239.1

Q ss_pred             CCCHHHHHHHHHcCCCCccccccccCChHHHHHHHHHHHHHH--hCCccCCCCCCCCChhhhhhcccccceEEeeeceee
Q 016586          133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKM--TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI  210 (387)
Q Consensus       133 ~~~deei~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~--tg~sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGV  210 (387)
                      ..+||||++++.+|++|+|+||++++|++||+.+||++|++.  ++.++++|+.+++||++++++||||+|||+|||+||
T Consensus        27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv  106 (441)
T 2r4f_A           27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV  106 (441)
T ss_dssp             SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred             cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence            358999999999999999999999999999999999999999  788999999999999999999999999999999999


Q ss_pred             ecceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 016586          211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV  290 (387)
Q Consensus       211 AGPLlInG~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~  290 (387)
                      ||||+|||++|+|||||||||||||+|||||+|+.+||+++++++|+|||+|+|+|+++.+|.++++|+++|+||++|++
T Consensus       107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~  186 (441)
T 2r4f_A          107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE  186 (441)
T ss_dssp             EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             HHhhhcCCcceeeEEEEecCCeEEEEEEeeccccccchhhhHHHHHHHHHHHhhCCCCeEEEEeCCCccccccceeE---
Q 016586          291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGMCLVIYLKSCSY---  367 (387)
Q Consensus       291 van~tSR~GgL~~I~~~i~G~~l~lrf~~dTGDAMGmNMVnk~~E~v~~~I~~~fp~~~visIsgN~ctDrl~~A~~---  367 (387)
                      +++++||||||++|++++.|+++|+||.||||||||||||||++|++++||+++||++++++|||||||||+++|.+   
T Consensus       187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~  266 (441)
T 2r4f_A          187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE  266 (441)
T ss_dssp             HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred             HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977   


Q ss_pred             -EEeeeeeeeeh
Q 016586          368 -ILLSVTNEIWL  378 (387)
Q Consensus       368 -~~~~v~~e~~~  378 (387)
                       ++.+|+.|+.+
T Consensus       267 gRGk~V~ae~~i  278 (441)
T 2r4f_A          267 GRGKSVVCEAVI  278 (441)
T ss_dssp             CCEEEEEEEEEE
T ss_pred             CCceEEEEEEec
Confidence             77788888754

PyMOL of 2r4f

>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*	Back alignment and structure

>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		387
d1dqaa4		292	d.179.1.1 (A:462-586,A:704-870) Substrate-binding	1e-61
d1dqaa1		117	d.58.20.1 (A:587-703) NAD-binding domain of HMG-Co	6e-47
d1r31a2		266	d.179.1.1 (A:3-110,A:221-378) Substrate-binding do	7e-31

>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Substrate-binding domain of HMG-CoA reductase
superfamily: Substrate-binding domain of HMG-CoA reductase
family: Substrate-binding domain of HMG-CoA reductase
domain: Substrate-binding domain of HMG-CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  198 bits (504), Expect = 1e-61
 Identities = 71/200 (35%), Positives = 97/200 (48%), Gaps = 6/200 (3%)

Query: 136 DEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGR--SLQGLPLDGFDYDSIL 193
           D +++Q V    IP+Y LE+ +    R  +IRR+ L K      SLQ LP   ++Y  ++
Sbjct: 3   DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVM 62

Query: 194 GQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASML 253
           G CCE  +GY+ IPVG+AGPL LD  E+ VPMATTEGCLVASTNRGC+AI   GGA+S +
Sbjct: 63  GACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRV 122

Query: 254 LRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNL 313
           L D       V  A  +R    +           + +  N             +    N+
Sbjct: 123 LADKSVVCEAVIPAKVVR----EVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANI 178

Query: 314 YIRFCCTTGDAMGMNMVSKG 333
                   G     N+ S  
Sbjct: 179 VTAIYIACGQDAAQNVGSSN 198

PyMOL of d1dqaa4

>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 117	Back information, alignment and structure

>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Length = 266	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		387
d1dqaa4		292	Substrate-binding domain of HMG-CoA reductase {Hum	100.0
d1dqaa1		117	NAD-binding domain of HMG-CoA reductase {Human (Ho	100.0
d1r31a2		266	Substrate-binding domain of HMG-CoA reductase {Pse	100.0
d1r31a1		110	NAD-binding domain of HMG-CoA reductase {Pseudomon	99.85
d3bypa1		82	Putative Zinc transporter CzrB {Thermus thermophil	90.15

>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Substrate-binding domain of HMG-CoA reductase
superfamily: Substrate-binding domain of HMG-CoA reductase
family: Substrate-binding domain of HMG-CoA reductase
domain: Substrate-binding domain of HMG-CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-45  Score=355.51  Aligned_cols=153  Identities=44%  Similarity=0.709  Sum_probs=142.6

Q ss_pred             CCHHHHHHHHHcCCCCccccccccCChHHHHHHHHHHHHHHhCC--ccCCCCCCCCChhhhhhcccccceEEeeeceeee
Q 016586          134 AQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGR--SLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIA  211 (387)
Q Consensus       134 ~~deei~~~v~~g~i~~y~LE~~l~d~~rAv~iRR~~l~~~tg~--sL~~L~~~~~Dy~~i~g~~iEN~IG~vqIPvGVA  211 (387)
                      .+||||+++|.+|++|+|+||+.|+|++||+.+||+++++.++.  +|++||+++|||+++.++||||+||++|||+|||
T Consensus         1 ~~d~e~~~~v~~g~i~~y~lE~~l~~~~~av~iRR~~~~~~~~~~~~l~~lp~~~~dy~~v~~~~~EN~IG~~~lPlGvA   80 (292)
T d1dqaa4           1 LSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVA   80 (292)
T ss_dssp             CCHHHHHHHHHHTTCCGGGHHHHSSSHHHHHHHHHHHHHTTCSSTTGGGGSCCTTCCHHHHTTTTCSSEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHcCCCchHHHHHhcCChHHHHHHHHHHHHHhhCCccchhhCCCCCcCHHHHhccCccceeeeEeccceee
Confidence            37999999999999999999999999999999999999999985  8999999999999999999999999999999999


Q ss_pred             cceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEeccCeeecceEEEeCChhcHHHHHHHhcCCCCHHHHHHH
Q 016586          212 GPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVV  291 (387)
Q Consensus       212 GPLlInG~ey~VPMATtEgsLVASanRGaKaI~~sGG~~t~v~~d~MTRapv~~f~s~~dA~~l~~wie~p~n~~~L~~v  291 (387)
                      |||+|||++|+|||||||||||||+|||||+++.+||+++++++|.|.++..+.     ....++.+++.  ..+.|.+.
T Consensus        81 gpl~InG~~y~VPMATeEgslVAS~nrGaK~i~~~GG~~~~v~~d~~~~a~~~~-----~~~vv~~~Lk~--~~e~l~~~  153 (292)
T d1dqaa4          81 GPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADKSVVCEAVI-----PAKVVREVLKT--TTEAMIEV  153 (292)
T ss_dssp             EEEEETTEEEEEEEECSCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEEEEEEE-----CHHHHHHTTSS--CHHHHHHH
T ss_pred             ccEEECCeEEEEeeeechhHHHHHhhHHHHHHHhcCCCEEEEehhhhhhhhccC-----cHHHHHHHHcC--CHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998886     33457788886  77877665


Q ss_pred             Hh
Q 016586          292 FN  293 (387)
Q Consensus       292 an  293 (387)
                      ..
T Consensus       154 ~~  155 (292)
T d1dqaa4         154 NI  155 (292)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

PyMOL of d1dqaa4

>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}	Back information, alignment and structure

>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}	Back information, alignment and structure

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure