Citrus Sinensis ID: 016596
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | 2.2.26 [Sep-21-2011] | |||||||
| Q42967 | 391 | Uroporphyrinogen decarbox | N/A | no | 0.961 | 0.948 | 0.830 | 0.0 | |
| O22886 | 394 | Uroporphyrinogen decarbox | yes | no | 0.958 | 0.939 | 0.816 | 1e-178 | |
| Q10LR9 | 390 | Uroporphyrinogen decarbox | yes | no | 0.968 | 0.958 | 0.794 | 1e-175 | |
| O81220 | 393 | Uroporphyrinogen decarbox | N/A | no | 0.860 | 0.844 | 0.837 | 1e-167 | |
| Q42855 | 330 | Uroporphyrinogen decarbox | N/A | no | 0.854 | 1.0 | 0.848 | 1e-166 | |
| B1WVY1 | 354 | Uroporphyrinogen decarbox | yes | no | 0.878 | 0.957 | 0.646 | 1e-132 | |
| B1XIF6 | 350 | Uroporphyrinogen decarbox | yes | no | 0.880 | 0.971 | 0.638 | 1e-132 | |
| B7KKW4 | 353 | Uroporphyrinogen decarbox | yes | no | 0.873 | 0.954 | 0.629 | 1e-129 | |
| P54224 | 350 | Uroporphyrinogen decarbox | N/A | no | 0.878 | 0.968 | 0.622 | 1e-128 | |
| B0JL12 | 350 | Uroporphyrinogen decarbox | yes | no | 0.883 | 0.974 | 0.612 | 1e-126 |
| >sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1 | Back alignment and function desciption |
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Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/371 (83%), Positives = 347/371 (93%)
Query: 16 SSSHSNSNSRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSY 75
S S+ N N R + C+ GGTVAEPK ++ +P+LL AVRG++VERPPVWLMRQAGRYMKSY
Sbjct: 21 SPSNFNLNPRLICCSAGGTVAEPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSY 80
Query: 76 QIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKG 135
Q++CEKYP FR+RSENVDLVVEISLQPW VF+PDGVILFSDILTPLSGMNIPFDIIKGKG
Sbjct: 81 QLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKG 140
Query: 136 PVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVV 195
PVIFDP+ T A+V++VREF PE+SVPYVG+ALTILR+EVNN+AAVLGFVGAPFTLASYVV
Sbjct: 141 PVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVV 200
Query: 196 EGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSP 255
EGGSSK+F+KIKRLAF++PKVLHALL+KF TSMAKY++YQAD+GAQAVQIFDSWATELSP
Sbjct: 201 EGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSP 260
Query: 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEG 315
VDFEEFSLPYLKQIVD+VK THP+L LILYASGSGGLLERL LTGVDVVSLDWTVDMA+G
Sbjct: 261 VDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADG 320
Query: 316 RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 375
RRRLGP+VA+QGNVDPG LFGSK+FITNRINDTV+KAG+ KHILNLGHGIKVGTPEEN A
Sbjct: 321 RRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFA 380
Query: 376 HFFEVAKAIRY 386
HFFE+AK +RY
Sbjct: 381 HFFEIAKGLRY 391
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Nicotiana tabacum (taxid: 4097) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7 |
| >sp|O22886|DCUP2_ARATH Uroporphyrinogen decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=At2g40490 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 626 bits (1614), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/371 (81%), Positives = 336/371 (90%), Gaps = 1/371 (0%)
Query: 17 SSHSNSNSRYVRCAV-GGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSY 75
S S + R VRC+V G TV E K + +EP+LL+AV+GE V+RPPVWLMRQAGRYMKSY
Sbjct: 24 SLSSTKSCRIVRCSVEGTTVTERKVSATSEPLLLRAVKGEVVDRPPVWLMRQAGRYMKSY 83
Query: 76 QIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKG 135
Q +CEKYPSFR+RSEN DLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDI+KGKG
Sbjct: 84 QTLCEKYPSFRDRSENADLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKG 143
Query: 136 PVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVV 195
P+IF+P + A+V QVREF PEESVPYVG+AL LR EVNNEAAVLGFVGAPFTL+SYV+
Sbjct: 144 PIIFNPPQSAADVAQVREFVPEESVPYVGEALRRLRNEVNNEAAVLGFVGAPFTLSSYVI 203
Query: 196 EGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSP 255
EGGSSK+F++IKRLAFSQPKVLHALL+KFTTSM Y++YQAD+GAQAVQIFDSWATELSP
Sbjct: 204 EGGSSKNFTQIKRLAFSQPKVLHALLQKFTTSMITYIRYQADSGAQAVQIFDSWATELSP 263
Query: 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEG 315
VDFEEFSLPYLKQIV+ VKQTHP+L LILYASGSGGLLERLA TGVDVVSLDWTVDMAEG
Sbjct: 264 VDFEEFSLPYLKQIVEAVKQTHPNLPLILYASGSGGLLERLARTGVDVVSLDWTVDMAEG 323
Query: 316 RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 375
R RLG D+AVQGNVDPG LFGSK+FIT+RI+DTV+KAGR KHILNLGHGIKVGTPEENVA
Sbjct: 324 RDRLGRDIAVQGNVDPGVLFGSKEFITSRIHDTVKKAGRDKHILNLGHGIKVGTPEENVA 383
Query: 376 HFFEVAKAIRY 386
HFFEVA+ IRY
Sbjct: 384 HFFEVAQEIRY 394
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q10LR9|DCUP2_ORYSJ Uroporphyrinogen decarboxylase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0337600 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/379 (79%), Positives = 334/379 (88%), Gaps = 5/379 (1%)
Query: 13 PLYSSSHSNSNSR---YVRC-AVGGTVAEPKNVSVAE-PMLLKAVRGEDVERPPVWLMRQ 67
P Y S S R VRC AVG +AE V AE P+L+ A++G VERPPVWLMRQ
Sbjct: 12 PAYLSGRSARARRPPPAVRCSAVGEVMAETAAVGTAEEPLLVSAIKGRKVERPPVWLMRQ 71
Query: 68 AGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIP 127
AGRYMKSYQ++CE++PSFRERSENVDLVVEISLQPW VFKPDGVILFSDILTPL GMNIP
Sbjct: 72 AGRYMKSYQLLCERHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLPGMNIP 131
Query: 128 FDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAP 187
FDI+KGKGPVIFDP+ T A V++VREF PEE VPYVG+AL ILREEVNNEAAVLGFVGAP
Sbjct: 132 FDIVKGKGPVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAP 191
Query: 188 FTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFD 247
FTLASY VEGGSSK+FSKIK++AFS+P++LH LL+KFTTSMA Y++YQADNGAQAVQIFD
Sbjct: 192 FTLASYCVEGGSSKNFSKIKKMAFSEPEILHNLLQKFTTSMANYIKYQADNGAQAVQIFD 251
Query: 248 SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLD 307
SWATELSPVDFEEFSLPYLKQIVD+VK+THP+L LILYASGSGGLLERL LTGVDVVSLD
Sbjct: 252 SWATELSPVDFEEFSLPYLKQIVDSVKETHPELPLILYASGSGGLLERLPLTGVDVVSLD 311
Query: 308 WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKV 367
WTVDMAEGR+RLG ++AVQGNVDPG LFGSK+FI+ RI DTV+KAG H+LNLGHGIKV
Sbjct: 312 WTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIFDTVQKAGNSGHVLNLGHGIKV 371
Query: 368 GTPEENVAHFFEVAKAIRY 386
GTPEENVAHFFEVAK IRY
Sbjct: 372 GTPEENVAHFFEVAKGIRY 390
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O81220|DCUP_MAIZE Uroporphyrinogen decarboxylase, chloroplastic OS=Zea mays GN=LES22 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/332 (83%), Positives = 306/332 (92%)
Query: 55 EDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILF 114
E+VERPPVWLMRQAGRYMKSYQ++CE+YPSFRERSENVDLVVEISLQPW VFKPDGVILF
Sbjct: 62 EEVERPPVWLMRQAGRYMKSYQLLCERYPSFRERSENVDLVVEISLQPWKVFKPDGVILF 121
Query: 115 SDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEV 174
SDILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL ILR+EV
Sbjct: 122 SDILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNILRQEV 181
Query: 175 NNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQY 234
NEAAVLGFVGAPFTLASY VEGGSSK+F+ IK++AFS+P +LH LL+KFTTSMA Y++Y
Sbjct: 182 KNEAAVLGFVGAPFTLASYCVEGGSSKNFTLIKKMAFSEPAILHNLLQKFTTSMANYIKY 241
Query: 235 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLE 294
QADNGAQAVQIFDSWATELSP DFEEFSLPYLKQIVD+V++THPDL LILYASGSGGLLE
Sbjct: 242 QADNGAQAVQIFDSWATELSPADFEEFSLPYLKQIVDSVRETHPDLPLILYASGSGGLLE 301
Query: 295 RLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGR 354
RL LTGVDVVSLDWTVDMAEGR+RLG + AVQGNVDPG LFGSK+FIT RI DTV+KAG
Sbjct: 302 RLPLTGVDVVSLDWTVDMAEGRKRLGSNTAVQGNVDPGVLFGSKEFITRRIYDTVQKAGN 361
Query: 355 WKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
H+LNLGHGIKVGTPEENVAHFFEVAK IRY
Sbjct: 362 VGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY 393
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Zea mays (taxid: 4577) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q42855|DCUP_HORVU Uroporphyrinogen decarboxylase (Fragment) OS=Hordeum vulgare GN=DCUP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 280/330 (84%), Positives = 304/330 (92%)
Query: 57 VERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSD 116
VERPPVWLMRQAGRYMKSYQ +CEKYP FRERSENVDLVVEISLQPW VFKPDGVILFSD
Sbjct: 1 VERPPVWLMRQAGRYMKSYQNLCEKYPLFRERSENVDLVVEISLQPWKVFKPDGVILFSD 60
Query: 117 ILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNN 176
ILTPL GMNIPFDI+KGKGPVI+DP+ T A V++VREF PEE VPYVG+AL +LR EV N
Sbjct: 61 ILTPLPGMNIPFDIVKGKGPVIYDPLRTAAAVNEVREFVPEEWVPYVGQALNLLRGEVKN 120
Query: 177 EAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236
EAAVLGFVGAPFTLASY VEGGSSK+FSKIKR+AF++P +LH LL+KFTTSMA Y++YQA
Sbjct: 121 EAAVLGFVGAPFTLASYCVEGGSSKNFSKIKRMAFAEPAILHNLLQKFTTSMANYIKYQA 180
Query: 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL 296
DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+VK+THPDL LILYASGSGGLLERL
Sbjct: 181 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPDLPLILYASGSGGLLERL 240
Query: 297 ALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK 356
LTGVDVVSLDWTVDMAEGR+RLG ++AVQGNVDPG LFGSK+FIT RI DTV+KAG
Sbjct: 241 PLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFITKRIYDTVQKAGSQG 300
Query: 357 HILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
H+LNLGHGIKVGTPEENVAHFFEVAK IRY
Sbjct: 301 HVLNLGHGIKVGTPEENVAHFFEVAKGIRY 330
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Hordeum vulgare (taxid: 4513) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B1WVY1|DCUP_CYAA5 Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain ATCC 51142) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 219/339 (64%), Positives = 272/339 (80%)
Query: 46 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHV 105
P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW
Sbjct: 8 PYLLRAARGEILDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLAIEISLQPWRA 67
Query: 106 FKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGK 165
F+PDGVI+FSDILTPL GM IPFDI++ KGPVI PI T +VD +R DPEES+P++
Sbjct: 68 FQPDGVIMFSDILTPLPGMGIPFDIVESKGPVIDPPIRTKEQVDNLRPLDPEESLPFIKT 127
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
L LR+EV N++ VLGFVG+P+TLA+Y +EG SSK+++ IK +AFSQP++LH+ L K
Sbjct: 128 ILQSLRQEVGNQSTVLGFVGSPWTLAAYAIEGKSSKNYAIIKSMAFSQPEILHSFLSKIA 187
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285
++A YV+YQ D GAQ VQ+FDSWA +LSP D+E F+LPY +Q+V VK+THPD LILY
Sbjct: 188 DAIAIYVRYQIDCGAQVVQLFDSWAGQLSPQDYETFALPYQQQVVRQVKETHPDTPLILY 247
Query: 286 ASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345
SGS G+LER+ +GVD+VS+DWTVDMAE R+RLG D+ VQGN+DPG LFGS+DFI RI
Sbjct: 248 ISGSAGVLERMGQSGVDIVSVDWTVDMAEARQRLGRDMKVQGNIDPGVLFGSQDFIKARI 307
Query: 346 NDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAI 384
DTVRKAGR HILNLGHG+ VGTPE+NV FFE AK +
Sbjct: 308 LDTVRKAGRGGHILNLGHGVLVGTPEDNVRCFFETAKQV 346
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B1XIF6|DCUP_SYNP2 Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 217/340 (63%), Positives = 270/340 (79%)
Query: 46 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHV 105
P+LL+A RGE VER PVW+MRQAGRYMK Y+ + EKYPSFRERSEN DL +EISLQPWH
Sbjct: 8 PLLLRAARGEKVERTPVWMMRQAGRYMKIYRDLREKYPSFRERSENPDLAIEISLQPWHA 67
Query: 106 FKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGK 165
F+PDGVI+FSDILTPL GM IPFDII+ KGP+I +PI T A+VD + FDP ES+P++
Sbjct: 68 FQPDGVIMFSDILTPLPGMGIPFDIIESKGPIIENPIRTQAQVDAMTPFDPAESLPFIKT 127
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
L LR+EV N + VLGFVGAP+TLA+Y +EG SSK+++ IK +AFS+P VLH+ L K
Sbjct: 128 ILGTLRQEVGNASTVLGFVGAPWTLAAYAIEGKSSKNYAIIKNMAFSEPAVLHSFLGKIA 187
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285
++A YV YQ + GAQ +Q+FDSWA +LSP D++ F+LPY K++VD VK +PD LILY
Sbjct: 188 DAIADYVCYQIECGAQVIQMFDSWAGQLSPQDYDMFALPYQKRVVDKVKAKYPDFPLILY 247
Query: 286 ASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345
SGS G+LER+ +GVD+VS+DWTVDMA+ R+RLG D+ VQGN+DPG LFGS+DFI RI
Sbjct: 248 ISGSAGVLERMGKSGVDIVSVDWTVDMADARQRLGKDMKVQGNIDPGVLFGSQDFIKARI 307
Query: 346 NDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385
DTVRKAG W HILNLGHG+ VGTPE+NV FFE K ++
Sbjct: 308 IDTVRKAGNWGHILNLGHGVLVGTPEDNVRFFFETCKNVQ 347
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B7KKW4|DCUP_CYAP7 Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain PCC 7424) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 212/337 (62%), Positives = 267/337 (79%)
Query: 46 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHV 105
P LL+A RGE ++RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW
Sbjct: 8 PYLLRAARGEVLDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENADLAIEISLQPWRA 67
Query: 106 FKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGK 165
F+PDGVI+FSDILTPL G+ IPFDII+ KGP+I PI T ++D + FDP+++VP+V
Sbjct: 68 FQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQQQIDHLHPFDPDQTVPFVKT 127
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
L LR+EV N++ VLGFVGAP+TLA+Y VEG SSK +S IK +AFS+P +LH LL K
Sbjct: 128 ILKTLRQEVGNQSTVLGFVGAPWTLAAYAVEGKSSKTYSIIKSMAFSEPAILHQLLSKLA 187
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285
+A YV+YQ D GAQ VQ+FDSWA +L+P D++ F+LPY +Q+V VK+THPD LILY
Sbjct: 188 DMVASYVRYQIDCGAQVVQMFDSWAGQLTPQDYDVFALPYQQQVVRQVKETHPDTPLILY 247
Query: 286 ASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345
SGS G+LER+ +GVD++S+DWTVDMAE R+RLG ++ VQGN+DPG LFGS+ FI +RI
Sbjct: 248 ISGSAGVLERMGKSGVDMISVDWTVDMAEARQRLGKEMKVQGNIDPGVLFGSQSFIRDRI 307
Query: 346 NDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382
DT+RKAG HILNLGHG+ VGTPE+NV FFE AK
Sbjct: 308 VDTIRKAGNQGHILNLGHGVLVGTPEDNVRFFFETAK 344
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Cyanothece sp. (strain PCC 7424) (taxid: 65393) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|P54224|DCUP_SYNY3 Uroporphyrinogen decarboxylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 211/339 (62%), Positives = 267/339 (78%)
Query: 46 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHV 105
P LL+ RGE V+RPPVW+MRQAGRYMK Y+ + +KYPSFRERSEN DL +EISLQPW
Sbjct: 8 PYLLRVARGEVVKRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLAIEISLQPWQA 67
Query: 106 FKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGK 165
F+PDGVI+FSDILTPL G+ IPFDII+ KGP+I PI T A+VDQ+ DPE S+P++
Sbjct: 68 FQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQAQVDQLHALDPESSLPFIKT 127
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
L LR+EV N++ VLGFVGAP+TLA+Y +EG SSK + IK++AFS+P +LH+ L K
Sbjct: 128 ILGTLRKEVGNQSTVLGFVGAPWTLAAYAIEGKSSKDYKVIKQMAFSEPAILHSFLDKIA 187
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285
++A YV+YQ D GAQ VQ+FDSWA +LSP D++ F+LPY +++V VK+ HPD LILY
Sbjct: 188 EAIAVYVRYQIDCGAQVVQLFDSWAGQLSPQDYDTFALPYQQKVVKLVKEIHPDTPLILY 247
Query: 286 ASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345
SGS G+LER+ +GVD+VS+DWTVDMA+ R+RLG ++ VQGN+DPG LFGS+DFI RI
Sbjct: 248 ISGSAGILERMGKSGVDIVSVDWTVDMADARQRLGKEMKVQGNMDPGVLFGSQDFIKERI 307
Query: 346 NDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAI 384
DTVRKAG+ HI NLGHG+ VGTPE+NV FFE AK +
Sbjct: 308 LDTVRKAGQGGHIFNLGHGVLVGTPEDNVRFFFETAKQV 346
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B0JL12|DCUP_MICAN Uroporphyrinogen decarboxylase OS=Microcystis aeruginosa (strain NIES-843) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/341 (61%), Positives = 265/341 (77%)
Query: 46 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHV 105
P LL+A +GE + RPPVW+MRQAGRYM+ Y+ + +KYPSFRERSEN DL +EISLQPW
Sbjct: 8 PYLLRAAKGEILPRPPVWMMRQAGRYMQIYRELRDKYPSFRERSENADLAIEISLQPWRA 67
Query: 106 FKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGK 165
F+PDGVI+FSDILTPL+G+ IPFDII+ KGP+I PI T A+VDQ+ DP++S+P++
Sbjct: 68 FQPDGVIMFSDILTPLAGIGIPFDIIESKGPIIDSPIRTQAQVDQLNPLDPDQSLPFIKT 127
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
L LR+EV N++ VLGFVGAP+TLA+Y VEG SK +S IK +AFS+P VLH L K
Sbjct: 128 ILKTLRQEVGNKSTVLGFVGAPWTLAAYAVEGKGSKSYSVIKGMAFSEPSVLHQFLDKLA 187
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285
+A YV+YQ D GAQ VQ+FDSWA +L+P D++ F+LPY +++V VK+THPD LILY
Sbjct: 188 DMIATYVRYQIDCGAQVVQMFDSWAGQLTPQDYDVFALPYQQKVVRLVKETHPDTPLILY 247
Query: 286 ASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345
SGS G+LER+ +GVD++S+DWTVD+AE R+RLG + VQGN+DPG LFGS+ FI RI
Sbjct: 248 ISGSAGVLERMGKSGVDIISVDWTVDLAEARQRLGKAMMVQGNIDPGVLFGSQSFIRERI 307
Query: 346 NDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
DT+RKAG HILNLGHG+ VGTPE+NV FFE AK Y
Sbjct: 308 IDTIRKAGNQGHILNLGHGVLVGTPEDNVRFFFETAKQFSY 348
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| 356540042 | 387 | PREDICTED: uroporphyrinogen decarboxylas | 1.0 | 0.997 | 0.832 | 0.0 | |
| 255559645 | 389 | uroporphyrinogen decarboxylase, putative | 0.966 | 0.958 | 0.871 | 0.0 | |
| 359806779 | 387 | uncharacterized protein LOC100800753 [Gl | 1.0 | 0.997 | 0.834 | 0.0 | |
| 359486347 | 392 | PREDICTED: uroporphyrinogen decarboxylas | 0.932 | 0.918 | 0.888 | 0.0 | |
| 388522895 | 390 | unknown [Lotus japonicus] | 0.945 | 0.935 | 0.866 | 0.0 | |
| 449457423 | 392 | PREDICTED: uroporphyrinogen decarboxylas | 0.932 | 0.918 | 0.866 | 0.0 | |
| 449516780 | 392 | PREDICTED: uroporphyrinogen decarboxylas | 0.932 | 0.918 | 0.866 | 0.0 | |
| 2501647 | 391 | RecName: Full=Uroporphyrinogen decarboxy | 0.961 | 0.948 | 0.830 | 0.0 | |
| 357461511 | 389 | Uroporphyrinogen decarboxylase [Medicago | 1.0 | 0.992 | 0.799 | 0.0 | |
| 224145917 | 403 | predicted protein [Populus trichocarpa] | 0.968 | 0.928 | 0.817 | 0.0 |
| >gi|356540042|ref|XP_003538500.1| PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/387 (83%), Positives = 357/387 (92%), Gaps = 1/387 (0%)
Query: 1 MSCSSISAISNFPLYSSS-HSNSNSRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVER 59
M C + + S P S+ S+ ++ + C + GTVAEPK+ + AEP+LL AVRG DVER
Sbjct: 1 MLCVNTAFTSFLPRKSTCVFSSKSTTPISCTLQGTVAEPKSTAAAEPLLLNAVRGIDVER 60
Query: 60 PPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119
PPVWLMRQAGRYMKSYQ ICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT
Sbjct: 61 PPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 120
Query: 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAA 179
PLSGMNIPFDI+KGKGPVIFDPI+T A+VDQV+EF PEESVPYVG+ALTILR+EV+N+AA
Sbjct: 121 PLSGMNIPFDIVKGKGPVIFDPIHTSAQVDQVKEFIPEESVPYVGEALTILRKEVDNKAA 180
Query: 180 VLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNG 239
VLGFVGAPFTLASYVVEGGSSK+FSKIKRLAFS+ K+LH+LL+KFTTSMA+Y+QYQADNG
Sbjct: 181 VLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNG 240
Query: 240 AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT 299
AQAVQIFDSWATELSPVDFEEFSLPYLKQI+DTVK++HPDL LILYASGSGGLLERLALT
Sbjct: 241 AQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPDLPLILYASGSGGLLERLALT 300
Query: 300 GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHIL 359
GVDVVSLDWTVDMA+GRRRLGP++AVQGNVDPG LFGSK+FIT+RI DTVRKAGR KHIL
Sbjct: 301 GVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRITDTVRKAGRGKHIL 360
Query: 360 NLGHGIKVGTPEENVAHFFEVAKAIRY 386
NLGHGIKVGTPEENVAHFFEVAK+IRY
Sbjct: 361 NLGHGIKVGTPEENVAHFFEVAKSIRY 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559645|ref|XP_002520842.1| uroporphyrinogen decarboxylase, putative [Ricinus communis] gi|223539973|gb|EEF41551.1| uroporphyrinogen decarboxylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/374 (87%), Positives = 349/374 (93%), Gaps = 1/374 (0%)
Query: 14 LYSSSH-SNSNSRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYM 72
LYSS S S + C++ GTVAEPK SVAEP+LL AVRGEDVERPPVWLMRQAGRYM
Sbjct: 16 LYSSPRKSVSKPPIIHCSLPGTVAEPKPASVAEPLLLNAVRGEDVERPPVWLMRQAGRYM 75
Query: 73 KSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIK 132
KSYQIICEKYPSFRERSENVDLVVEISLQPW+VFKPDGVILFSDILTPLSGMNIPFDI+K
Sbjct: 76 KSYQIICEKYPSFRERSENVDLVVEISLQPWNVFKPDGVILFSDILTPLSGMNIPFDIVK 135
Query: 133 GKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLAS 192
GKGP+IF+P+ T +VDQVREF PEESVPYVG++LTILR+EV+N+AAVLGFVGAPFTLAS
Sbjct: 136 GKGPIIFNPLRTAEDVDQVREFVPEESVPYVGESLTILRKEVDNKAAVLGFVGAPFTLAS 195
Query: 193 YVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATE 252
Y VEGGSSKHFSKIKRLAFSQP+VLHALL+KF TSMAKYVQYQADNGAQAVQIFDSWATE
Sbjct: 196 YCVEGGSSKHFSKIKRLAFSQPEVLHALLQKFATSMAKYVQYQADNGAQAVQIFDSWATE 255
Query: 253 LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDM 312
LSPVDFE+FSLPYLKQIVDTVK+THP+L LILYASGSGGLLERLALTGVDVVSLDWTVDM
Sbjct: 256 LSPVDFEQFSLPYLKQIVDTVKKTHPNLPLILYASGSGGLLERLALTGVDVVSLDWTVDM 315
Query: 313 AEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE 372
AEGRRRLGPD+AVQGNVDPG LFGSK+FITNRIND VRKAG+ KHILNLGHGI VGTPEE
Sbjct: 316 AEGRRRLGPDMAVQGNVDPGVLFGSKEFITNRINDVVRKAGKGKHILNLGHGIVVGTPEE 375
Query: 373 NVAHFFEVAKAIRY 386
NVAHFFEVAK IRY
Sbjct: 376 NVAHFFEVAKGIRY 389
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806779|ref|NP_001241559.1| uncharacterized protein LOC100800753 [Glycine max] gi|255639814|gb|ACU20200.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/387 (83%), Positives = 355/387 (91%), Gaps = 1/387 (0%)
Query: 1 MSCSSISAISNFPLYSSSHSNSNSRY-VRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVER 59
M C + + S P S +S S + C + GTVAEPK+ + EP+LL AVRG DVER
Sbjct: 1 MLCVNTAFTSFLPRKSICFFSSKSTTPISCTLQGTVAEPKSTAAGEPLLLNAVRGIDVER 60
Query: 60 PPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119
PPVWLMRQAGRYMKSYQ ICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT
Sbjct: 61 PPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 120
Query: 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAA 179
PLSGMNIPFDI+KGKGPVIFDPI+T A+VDQVREF PEESVPYVG+ALTILR+EV+N+AA
Sbjct: 121 PLSGMNIPFDIVKGKGPVIFDPIHTAAQVDQVREFIPEESVPYVGEALTILRKEVDNKAA 180
Query: 180 VLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNG 239
VLGFVGAPFTLASYVVEGGSSK+FSKIKRLAFS+ K+LH+LL+KFTTSMA+Y+QYQADNG
Sbjct: 181 VLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNG 240
Query: 240 AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT 299
AQAVQIFDSWATELSPVDFEEFSLPYLKQI+DTVK++HP+L LILYASGSGGLLERLALT
Sbjct: 241 AQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPNLPLILYASGSGGLLERLALT 300
Query: 300 GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHIL 359
GVDVVSLDWTVDMA+GRRRLGP++AVQGNVDPG LFGSK+FIT+RINDTVRKAGR KHIL
Sbjct: 301 GVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVRKAGRGKHIL 360
Query: 360 NLGHGIKVGTPEENVAHFFEVAKAIRY 386
NLGHGIKVGTPEENVAHFFEVAK+IRY
Sbjct: 361 NLGHGIKVGTPEENVAHFFEVAKSIRY 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486347|ref|XP_002274385.2| PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like [Vitis vinifera] gi|297736517|emb|CBI25388.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/360 (88%), Positives = 341/360 (94%)
Query: 27 VRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFR 86
+ CA+GGTVAEP ++ EP+LL AVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFR
Sbjct: 33 IYCALGGTVAEPIIINATEPLLLTAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFR 92
Query: 87 ERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDA 146
ERSENVDLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIF+P+ T
Sbjct: 93 ERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFNPLRTAD 152
Query: 147 EVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206
+V+QVREF PE+SVPYVG+ALTILR+EV+N AAVLGFVGAPFTLASYVVEGGSSKHFSKI
Sbjct: 153 DVEQVREFVPEDSVPYVGEALTILRKEVDNAAAVLGFVGAPFTLASYVVEGGSSKHFSKI 212
Query: 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYL 266
KRLAFSQPKVLHALL+KFTTSMAKY+QYQADNGAQAVQIFDSWATELSPVDFEEFSLPYL
Sbjct: 213 KRLAFSQPKVLHALLQKFTTSMAKYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYL 272
Query: 267 KQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQ 326
KQIVD+VKQTHP+L LILYASGSGGLLERL LTGVDVVSLDWTVDMAEGRRRLG DVAVQ
Sbjct: 273 KQIVDSVKQTHPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRRRLGTDVAVQ 332
Query: 327 GNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
GN+DPG LFGSK+FITNRINDTVRKAG+ KHILNLGHGI VGTPEENVAHFFEVA+ IRY
Sbjct: 333 GNIDPGVLFGSKEFITNRINDTVRKAGKGKHILNLGHGIVVGTPEENVAHFFEVARGIRY 392
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388522895|gb|AFK49509.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/366 (86%), Positives = 343/366 (93%), Gaps = 1/366 (0%)
Query: 22 SNSRY-VRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICE 80
SNSR + C + GTVAEPK + AEP+LL AVRG DVERPPVWLMRQAGRYMKSYQ ICE
Sbjct: 25 SNSRNPISCTLPGTVAEPKLTAAAEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQTICE 84
Query: 81 KYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFD 140
K+PSFRERSENVDLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDI+KGKGPVIFD
Sbjct: 85 KHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFD 144
Query: 141 PINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSS 200
PI++ A+VDQV EF P+ SVPYVG+ALTILR+EV+N+AAVLGFVGAPFTLASYVVEGGSS
Sbjct: 145 PIHSAAQVDQVTEFIPQGSVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSS 204
Query: 201 KHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEE 260
KHFSKIKRLAFSQPKVLH+LL+KFTTSMA+Y+QYQADNGAQAVQIFDSWATELSPVDFEE
Sbjct: 205 KHFSKIKRLAFSQPKVLHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEE 264
Query: 261 FSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLG 320
FSLPYLKQIVDTVK+THP+L LILYASGSGGLLERLALTGVDVVSLDWTVDMA+GRRRLG
Sbjct: 265 FSLPYLKQIVDTVKKTHPELPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLG 324
Query: 321 PDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEV 380
P++ VQGNVDPG LFGSK+ IT+RI+DTVRKAGR KHILNLGHGI VGTPEENVAHFFEV
Sbjct: 325 PNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEV 384
Query: 381 AKAIRY 386
AK IRY
Sbjct: 385 AKGIRY 390
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457423|ref|XP_004146448.1| PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/360 (86%), Positives = 340/360 (94%)
Query: 27 VRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFR 86
+ C++GGTVAEPK + AEP+LL AVRGEDVERPPVWLMRQAGRYMKSYQ+ICEKYPSFR
Sbjct: 33 IHCSLGGTVAEPKPTTSAEPLLLNAVRGEDVERPPVWLMRQAGRYMKSYQVICEKYPSFR 92
Query: 87 ERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDA 146
+RSEN DLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDI+KGKGP+I +PI+ A
Sbjct: 93 QRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEAA 152
Query: 147 EVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206
+VDQVREF PEE+VPYVG+ALTILR+EV+N+AAVLGFVGAPFTLASYVVEGGSSKHFSKI
Sbjct: 153 QVDQVREFIPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKI 212
Query: 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYL 266
KRLAFSQPKVLHALL+KFT+SMA+YVQYQAD GAQAVQIFDSWATELSPVDFEEFSLPYL
Sbjct: 213 KRLAFSQPKVLHALLQKFTSSMARYVQYQADRGAQAVQIFDSWATELSPVDFEEFSLPYL 272
Query: 267 KQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQ 326
KQIV++VK+THP+L LILYASGSGGLLERLA TGVDVVSLDWTVDMAEGRRRLG D+AVQ
Sbjct: 273 KQIVESVKKTHPNLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADIAVQ 332
Query: 327 GNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
GNVDPG LFGSK+FIT RINDTV+KAG+ KHILNLGHGI VGTPEENVAHFFEVAK IRY
Sbjct: 333 GNVDPGVLFGSKEFITKRINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 392
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516780|ref|XP_004165424.1| PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/360 (86%), Positives = 340/360 (94%)
Query: 27 VRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFR 86
+ C++GGTVAEPK + AEP+LL AVRGEDVERPPVWLMRQAGRYMKSYQ+ICEKYPSFR
Sbjct: 33 IHCSLGGTVAEPKPTTSAEPLLLNAVRGEDVERPPVWLMRQAGRYMKSYQVICEKYPSFR 92
Query: 87 ERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDA 146
+RSEN DLVVEISLQPW VFKPDGVILFSDILTPLSGMNIPFDI+KGKGP+I +PI+ A
Sbjct: 93 QRSENTDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIANPISEAA 152
Query: 147 EVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206
+VDQVREF PEE+VPYVG+ALTILR+EV+N+AAVLGFVGAPFTLASYVVEGGSSKHFSKI
Sbjct: 153 QVDQVREFIPEENVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKI 212
Query: 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYL 266
KRLAFSQPKVLHALL+KFT+SMA+YVQYQAD GAQAVQIFDSWATELSPVDFEEFSLPYL
Sbjct: 213 KRLAFSQPKVLHALLQKFTSSMARYVQYQADRGAQAVQIFDSWATELSPVDFEEFSLPYL 272
Query: 267 KQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQ 326
KQIV++VK+THP+L LILYASGSGGLLERLA TGVDVVSLDWTVDMAEGRRRLG D+AVQ
Sbjct: 273 KQIVESVKKTHPNLPLILYASGSGGLLERLASTGVDVVSLDWTVDMAEGRRRLGADIAVQ 332
Query: 327 GNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
GNVDPG LFGSK+FIT RINDTV+KAG+ KHILNLGHGI VGTPEENVAHFFEVAK IRY
Sbjct: 333 GNVDPGVLFGSKEFITERINDTVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 392
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2501647|sp|Q42967.1|DCUP_TOBAC RecName: Full=Uroporphyrinogen decarboxylase, chloroplastic; Short=UPD; Short=URO-D; Flags: Precursor gi|1009429|emb|CAA58040.1| uroporphyrinogen decarboxylase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/371 (83%), Positives = 347/371 (93%)
Query: 16 SSSHSNSNSRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSY 75
S S+ N N R + C+ GGTVAEPK ++ +P+LL AVRG++VERPPVWLMRQAGRYMKSY
Sbjct: 21 SPSNFNLNPRLICCSAGGTVAEPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSY 80
Query: 76 QIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKG 135
Q++CEKYP FR+RSENVDLVVEISLQPW VF+PDGVILFSDILTPLSGMNIPFDIIKGKG
Sbjct: 81 QLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKG 140
Query: 136 PVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVV 195
PVIFDP+ T A+V++VREF PE+SVPYVG+ALTILR+EVNN+AAVLGFVGAPFTLASYVV
Sbjct: 141 PVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVV 200
Query: 196 EGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSP 255
EGGSSK+F+KIKRLAF++PKVLHALL+KF TSMAKY++YQAD+GAQAVQIFDSWATELSP
Sbjct: 201 EGGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSP 260
Query: 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEG 315
VDFEEFSLPYLKQIVD+VK THP+L LILYASGSGGLLERL LTGVDVVSLDWTVDMA+G
Sbjct: 261 VDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADG 320
Query: 316 RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 375
RRRLGP+VA+QGNVDPG LFGSK+FITNRINDTV+KAG+ KHILNLGHGIKVGTPEEN A
Sbjct: 321 RRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFA 380
Query: 376 HFFEVAKAIRY 386
HFFE+AK +RY
Sbjct: 381 HFFEIAKGLRY 391
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461511|ref|XP_003601037.1| Uroporphyrinogen decarboxylase [Medicago truncatula] gi|217072424|gb|ACJ84572.1| unknown [Medicago truncatula] gi|355490085|gb|AES71288.1| Uroporphyrinogen decarboxylase [Medicago truncatula] gi|388511527|gb|AFK43825.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/389 (79%), Positives = 350/389 (89%), Gaps = 3/389 (0%)
Query: 1 MSCSSISAISNFPLYSSSHSN---SNSRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDV 57
M C +S L H + S + ++C++ G VAEPK + EP+LL AVRG DV
Sbjct: 1 MFCGVVSTSFTSILPRKQHHSTPFSPFKSIQCSLPGAVAEPKTNNATEPLLLNAVRGLDV 60
Query: 58 ERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDI 117
ERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPW VF+PDGVILFSDI
Sbjct: 61 ERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDI 120
Query: 118 LTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNE 177
LTPLSGMNIPFDI+KGKGPVIFDP+++ +VDQVREF PEESVPYVG+AL+ILR+EV+N+
Sbjct: 121 LTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEVDNK 180
Query: 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQAD 237
+AVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFS+PK+LH+LL+KFTTSMA+Y+QYQAD
Sbjct: 181 SAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQAD 240
Query: 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLA 297
NGAQAVQIFDSWATELSPVDFE FSLPYLKQI+DTVK++HP+L LILYASGSGGLLER+A
Sbjct: 241 NGAQAVQIFDSWATELSPVDFERFSLPYLKQIIDTVKKSHPELPLILYASGSGGLLERIA 300
Query: 298 LTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKH 357
LTGVDVVSLDWTVDMA+GRRRLGP+VA+QGNVDPG LFGSK+ IT+RI+DTVRKAGR KH
Sbjct: 301 LTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKELITDRIHDTVRKAGRGKH 360
Query: 358 ILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
ILNLGHGI VGTPEENVAHFFEVAK I+Y
Sbjct: 361 ILNLGHGIVVGTPEENVAHFFEVAKGIKY 389
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145917|ref|XP_002325811.1| predicted protein [Populus trichocarpa] gi|222862686|gb|EEF00193.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/384 (81%), Positives = 344/384 (89%), Gaps = 10/384 (2%)
Query: 13 PLYSSSHSNSNSRYVRCAVGGTVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGR-- 70
P S +++N + + ++ GTVAEPK SVAEP+LL AVRGEDVERPPVWLMRQAGR
Sbjct: 20 PRKSLNYNNKYTPIIHSSLQGTVAEPKASSVAEPLLLNAVRGEDVERPPVWLMRQAGRNW 79
Query: 71 --------YMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLS 122
+ SYQIICEK+PSFRERSENVDLVVEISLQPW VF+PDGVILFSDILTPLS
Sbjct: 80 FTSYAHVSFKMSYQIICEKHPSFRERSENVDLVVEISLQPWKVFRPDGVILFSDILTPLS 139
Query: 123 GMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLG 182
GMNIPFDI+KGKGPVIF+P+ T +VDQVREF PEESVPYVG+ALT+LR+EV N+AAVLG
Sbjct: 140 GMNIPFDIVKGKGPVIFNPLRTADDVDQVREFVPEESVPYVGEALTVLRKEVENKAAVLG 199
Query: 183 FVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242
FVGAPFTLASYVVEGGSSKHF+KIKRLAFSQPKVLHALL+KF TSMAKY+QYQAD+GAQ
Sbjct: 200 FVGAPFTLASYVVEGGSSKHFTKIKRLAFSQPKVLHALLQKFATSMAKYIQYQADSGAQT 259
Query: 243 VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302
VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQ+HP+L LILYASGSGGLLERLALTGVD
Sbjct: 260 VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQSHPNLPLILYASGSGGLLERLALTGVD 319
Query: 303 VVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG 362
VVSLDW+VDMAEGR+RLGPDVAVQGNVDPG LFGSK+FITNRI D V+KAG+ KHILNLG
Sbjct: 320 VVSLDWSVDMAEGRKRLGPDVAVQGNVDPGVLFGSKEFITNRIYDVVKKAGKGKHILNLG 379
Query: 363 HGIKVGTPEENVAHFFEVAKAIRY 386
HGI VGTPEENVAHFFEVAK IRY
Sbjct: 380 HGIVVGTPEENVAHFFEVAKGIRY 403
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| TAIR|locus:2061903 | 394 | HEME2 [Arabidopsis thaliana (t | 0.994 | 0.974 | 0.790 | 5.9e-160 | |
| TAIR|locus:2086300 | 418 | HEME1 [Arabidopsis thaliana (t | 0.891 | 0.822 | 0.544 | 8.8e-102 | |
| TIGR_CMR|CHY_0483 | 350 | CHY_0483 "uroporphyrinogen dec | 0.852 | 0.94 | 0.468 | 3.1e-74 | |
| TIGR_CMR|GSU_3453 | 340 | GSU_3453 "uroporphyrinogen dec | 0.841 | 0.955 | 0.423 | 1.2e-65 | |
| UNIPROTKB|Q9KV26 | 355 | hemE "Uroporphyrinogen decarbo | 0.857 | 0.932 | 0.405 | 4.1e-65 | |
| TIGR_CMR|VC_0332 | 355 | VC_0332 "uroporphyrinogen deca | 0.857 | 0.932 | 0.405 | 4.1e-65 | |
| TIGR_CMR|CPS_0448 | 355 | CPS_0448 "uroporphyrinogen dec | 0.857 | 0.932 | 0.391 | 1.6e-63 | |
| UNIPROTKB|P29680 | 354 | hemE [Escherichia coli K-12 (t | 0.857 | 0.935 | 0.398 | 1.4e-62 | |
| TIGR_CMR|SO_0435 | 354 | SO_0435 "uroporphyrinogen deca | 0.867 | 0.946 | 0.396 | 1.8e-62 | |
| TIGR_CMR|CBU_0275 | 361 | CBU_0275 "uroporphyrinogen dec | 0.865 | 0.925 | 0.382 | 3.1e-60 |
| TAIR|locus:2061903 HEME2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1558 (553.5 bits), Expect = 5.9e-160, P = 5.9e-160
Identities = 305/386 (79%), Positives = 339/386 (87%)
Query: 2 SCSSISAISNFPLYXXXXXXXXXRYVRCAVGGTVAEPKNVSV-AEPMLLKAVRGEDVERP 60
S SS + +S P R VRC+V GT + VS +EP+LL+AV+GE V+RP
Sbjct: 10 SLSSSTLLSISPR-KSLSSTKSCRIVRCSVEGTTVTERKVSATSEPLLLRAVKGEVVDRP 68
Query: 61 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTP 120
PVWLMRQAGRYMKSYQ +CEKYPSFR+RSEN DLVVEISLQPW VFKPDGVILFSDILTP
Sbjct: 69 PVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWKVFKPDGVILFSDILTP 128
Query: 121 LSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAV 180
LSGMNIPFDI+KGKGP+IF+P + A+V QVREF PEESVPYVG+AL LR EVNNEAAV
Sbjct: 129 LSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESVPYVGEALRRLRNEVNNEAAV 188
Query: 181 LGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGA 240
LGFVGAPFTL+SYV+EGGSSK+F++IKRLAFSQPKVLHALL+KFTTSM Y++YQAD+GA
Sbjct: 189 LGFVGAPFTLSSYVIEGGSSKNFTQIKRLAFSQPKVLHALLQKFTTSMITYIRYQADSGA 248
Query: 241 QAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTG 300
QAVQIFDSWATELSPVDFEEFSLPYLKQIV+ VKQTHP+L LILYASGSGGLLERLA TG
Sbjct: 249 QAVQIFDSWATELSPVDFEEFSLPYLKQIVEAVKQTHPNLPLILYASGSGGLLERLARTG 308
Query: 301 VDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILN 360
VDVVSLDWTVDMAEGR RLG D+AVQGNVDPG LFGSK+FIT+RI+DTV+KAGR KHILN
Sbjct: 309 VDVVSLDWTVDMAEGRDRLGRDIAVQGNVDPGVLFGSKEFITSRIHDTVKKAGRDKHILN 368
Query: 361 LGHGIKVGTPEENVAHFFEVAKAIRY 386
LGHGIKVGTPEENVAHFFEVA+ IRY
Sbjct: 369 LGHGIKVGTPEENVAHFFEVAQEIRY 394
|
|
| TAIR|locus:2086300 HEME1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 188/345 (54%), Positives = 253/345 (73%)
Query: 42 SVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQ 101
S ++P+L+KA +G+ + RPP W+MRQAGRYM YQ + +K+PSFRERSEN DL+VEISLQ
Sbjct: 56 SSSDPLLVKAAKGQAISRPPAWMMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQ 115
Query: 102 PWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVP 161
PW F+PDGVI+FSDILTPL +PFDI + KGPVI PI T+ ++ ++ D E+ +
Sbjct: 116 PWQAFRPDGVIIFSDILTPLPAFGVPFDIEEVKGPVIQSPIRTEEDMKRLHPIDFEK-LQ 174
Query: 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALL 221
+VG +L ILR EV AAVLGFVGAP+T+A+Y+VEGG+++ ++ IK + + P VL ALL
Sbjct: 175 FVGDSLKILRREVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTVIKNMCHTAPDVLRALL 234
Query: 222 RKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS 281
T ++ +YV YQ ++GA +QIFDSW +L+P +E +S PY+++I+ VK+ PD
Sbjct: 235 SHLTKAITEYVVYQVEHGAHCIQIFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTP 294
Query: 282 LILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI 341
++ Y +G+GGLLER+ TG DV+ LDWTVDMA+GRRRLG +V+VQGNVDP LF +
Sbjct: 295 IVFYINGNGGLLERMKGTGADVIGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPAL 354
Query: 342 TNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
T I V+ AG HILNLGHG+ VGTPEE VAHFFE A+ + Y
Sbjct: 355 TEEIERVVKCAGPKGHILNLGHGVLVGTPEEAVAHFFETARNLDY 399
|
|
| TIGR_CMR|CHY_0483 CHY_0483 "uroporphyrinogen decarboxylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 156/333 (46%), Positives = 210/333 (63%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
LKA R E+ PVWLMRQAGRYM Y I KY SF E + +L VE++LQP
Sbjct: 6 LKACRRENTPYTPVWLMRQAGRYMAEYMEIRNKY-SFLEMCKTPELAVEVTLQPVRKLGV 64
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILF+DIL PL GM I F + +GPVI +P+ T +V +VR PEE VPYV +A+
Sbjct: 65 DAAILFADILLPLEGMGIGFRFARDEGPVIENPVRTIVDVKKVRVITPEEDVPYVLEAIK 124
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
ILR E+ + ++GF GAPFTLASY++EGG SK++ + KRL + P+ H LL K S
Sbjct: 125 ILRRELAGKVPLIGFSGAPFTLASYIIEGGGSKNYIQCKRLMWEAPEAWHELLGKIAEST 184
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288
+Y++ Q GAQAVQ+FDSW LSP D+E++ LP+ K + D +K+T + +I +A+
Sbjct: 185 VRYLKAQIAAGAQAVQVFDSWVGTLSPEDYEKYVLPHSKYVFDNLKET--GVPVIHFANN 242
Query: 289 SGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDT 348
+G +LE +A G DV+ LDW V + + +G D VQGN+DP ALF K+ I ++ +
Sbjct: 243 AGSMLELVAAAGGDVIGLDWRVSLDRAWQTVGFDRGVQGNLDPVALFAPKEVIRQKVKEI 302
Query: 349 VRKAG-RWKHILNLGHGIKVGTPEENVAHFFEV 380
+ KAG R HI NLGHGI TP EN + EV
Sbjct: 303 LIKAGKRPGHIFNLGHGIHKETPVENAQYLVEV 335
|
|
| TIGR_CMR|GSU_3453 GSU_3453 "uroporphyrinogen decarboxylase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 141/333 (42%), Positives = 201/333 (60%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L A G+ V+R PVWLMRQAGRY+ Y + K +F E + +L E+++QP +
Sbjct: 6 LDACWGKPVDRTPVWLMRQAGRYLPEYMAVRSKC-TFLELCKTPELAAEVTIQPIDILNV 64
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILTP+ M + D + G PV P+ T A+V+++R +PEE VPYV +
Sbjct: 65 DAAILFSDILTPVEPMGLKLDFVPG--PVFEHPVRTMADVEKLRIPNPEEDVPYVLDTIK 122
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
ILR E+ ++GF GAPFTLA Y+VEG SK ++ IKR+ ++ P V AL+ K T
Sbjct: 123 ILRRELAGRVPLIGFGGAPFTLACYMVEGKGSKDWANIKRMMYAAPDVYAALMDKVTMMD 182
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTV-KQTHPDLSLILYAS 287
+Y+ Q GAQA+QIFD+W LSP D+E++ LPY ++++ + +Q P +I +
Sbjct: 183 MEYLNAQIKAGAQAIQIFDTWGGVLSPTDYEKYVLPYTTKLINGLNRQNTP---VIHFVK 239
Query: 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347
G+G +LE + G DV+ LDW V++ + R LG ++AVQGN+DP L+ K+ I +
Sbjct: 240 GAGTMLETVQKAGGDVMGLDWHVNLGKARDVLGQNMAVQGNLDPTVLYAPKEVIEAEVKR 299
Query: 348 TV-RKAGRWKHILNLGHGIKVGTPEENVAHFFE 379
+ AGR HI NLGHGI P EN H E
Sbjct: 300 VLDENAGRPGHIFNLGHGILPTVPPENAIHMVE 332
|
|
| UNIPROTKB|Q9KV26 hemE "Uroporphyrinogen decarboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 136/335 (40%), Positives = 202/335 (60%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+ + V+ PVW+MRQAGRY+ Y+ + F +N +L E++LQP F
Sbjct: 10 LRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAGDFMALCKNAELASEVTLQPLRRFPL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILT M + G+GPV PI A+VD++ DPE + YV A+
Sbjct: 70 DAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVR 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+R+++ E ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +S+P VLHALL K S+
Sbjct: 130 QIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSV 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYA 286
Y+ Q GAQAV +FD+W L+P D+++FSL Y+ +IVD + + + + + L+
Sbjct: 190 ISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G LE++A TG D V LDWT+++A+ + R+G VA+QGN+DP L+ I +
Sbjct: 250 KNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSILYAPAPRIREEVA 309
Query: 347 DTVRKAGRWK--HILNLGHGIKVGTPEENVAHFFE 379
+ G+ H+ NLGHGI + P EN F E
Sbjct: 310 SILAGFGQGGTGHVFNLGHGIHLDVPPENAGVFVE 344
|
|
| TIGR_CMR|VC_0332 VC_0332 "uroporphyrinogen decarboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 136/335 (40%), Positives = 202/335 (60%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+ + V+ PVW+MRQAGRY+ Y+ + F +N +L E++LQP F
Sbjct: 10 LRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAGDFMALCKNAELASEVTLQPLRRFPL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILT M + G+GPV PI A+VD++ DPE + YV A+
Sbjct: 70 DAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVR 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+R+++ E ++GF G+P+TLA+Y+VEGGSSK F+KIK++ +S+P VLHALL K S+
Sbjct: 130 QIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSV 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYA 286
Y+ Q GAQAV +FD+W L+P D+++FSL Y+ +IVD + + + + + L+
Sbjct: 190 ISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G LE++A TG D V LDWT+++A+ + R+G VA+QGN+DP L+ I +
Sbjct: 250 KNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSILYAPAPRIREEVA 309
Query: 347 DTVRKAGRWK--HILNLGHGIKVGTPEENVAHFFE 379
+ G+ H+ NLGHGI + P EN F E
Sbjct: 310 SILAGFGQGGTGHVFNLGHGIHLDVPPENAGVFVE 344
|
|
| TIGR_CMR|CPS_0448 CPS_0448 "uroporphyrinogen decarboxylase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 131/335 (39%), Positives = 197/335 (58%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+ + V+ PVW+MRQAGRY+ Y+ + + F +N +L E+++QP F
Sbjct: 10 LRALLKQPVDYTPVWMMRQAGRYLPEYREVRKNAGDFMSVCKNAELACEVTIQPLRRFPL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILT M + G+GP PI A+VD++ DPE+ + YV A+
Sbjct: 70 DAAILFSDILTIPDAMGLGLYFETGEGPKFERPITCKADVDKIAVPDPEDELGYVMNAVR 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+R+E+ E ++GF G+P+TLA+Y++EGGSSK F+KIK++ F++P+ LH LL K S+
Sbjct: 130 TIRKELKGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMMFAEPQTLHLLLDKLADSV 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP--DLSLILYA 286
Y+ Q GAQ+V +FD+W LSP D+ EFSL Y+ +IVD + + + + + L+
Sbjct: 190 ISYLNAQIAAGAQSVMVFDTWGGVLSPRDYNEFSLQYMAKIVDGLTRHNEGRQVPVTLFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G LE +A TG D V LDWT+D+ + R+G VA+QGN+DP L+ I ++
Sbjct: 250 KNGGMWLESIAATGCDAVGLDWTIDIENAKARVGDKVALQGNMDPSMLYAPLPRIEQEVS 309
Query: 347 DTVRKAGRWK--HILNLGHGIKVGTPEENVAHFFE 379
+ G H+ NLGHGI ++ HF E
Sbjct: 310 KILSGFGEGGTGHVFNLGHGIHPDVNPDHAGHFIE 344
|
|
| UNIPROTKB|P29680 hemE [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 133/334 (39%), Positives = 197/334 (58%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+ + V+ PVW+MRQAGRY+ Y+ + F +N +L E++LQP +
Sbjct: 10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILT M + G+GP P+ A+VD++ DPE+ + YV A+
Sbjct: 70 DAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVR 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+R E+ E ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K S+
Sbjct: 130 TIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSV 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYA 286
Y+ Q GAQAV IFD+W L+ D+++FSL Y+ +IVD + + + + + L+
Sbjct: 190 TLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G G LE +A TG D + LDWT D+A+ RRR+G VA+QGN+DP L+ I +
Sbjct: 250 KGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVA 309
Query: 347 DTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 379
+ G + H+ NLGHGI P E+ F E
Sbjct: 310 TILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343
|
|
| TIGR_CMR|SO_0435 SO_0435 "uroporphyrinogen decarboxylase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 134/338 (39%), Positives = 198/338 (58%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+ + V+ PVW+MRQAGRY+ Y+ + F +N +L E++LQP ++
Sbjct: 10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYEL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D ILFSDILT M + G+GP P +T + ++ DPE+ + YV KA++
Sbjct: 70 DAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLSIPDPEDELGYVMKAVS 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+R E+N + ++GF G+P+TLA+Y+VEGGSSK F KIK++A+++P LH LL K S+
Sbjct: 130 TIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEPAALHMLLDKLADSV 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP--DLSLILYA 286
Y+ Q NGAQ++ IFDSW LS + EFSL Y+++IVD + + + + L+
Sbjct: 190 TLYLNAQVANGAQSLMIFDSWGGALSHTAYREFSLRYMQKIVDGLTRFADGRQVPVTLFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G G LE +A TG D + LDWTVD+A+ RRR+G VA+QGN+DP L+ I +
Sbjct: 250 KGGGLWLEAMAETGCDALGLDWTVDIADARRRVGHKVALQGNMDPSMLYAPIPRIEEEVG 309
Query: 347 DTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAKA 383
+ G H+ NLGHGI E+ F + A
Sbjct: 310 QILAGYGEGTGHVFNLGHGIHQHVDPEHAGAFIKAVHA 347
|
|
| TIGR_CMR|CBU_0275 CBU_0275 "uroporphyrinogen decarboxylase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 129/337 (38%), Positives = 196/337 (58%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
++A+ + V+R PVW+MRQAGRY+ Y+ + EK P+F + +L E +LQP F
Sbjct: 10 IRALLRQPVDRTPVWIMRQAGRYLPEYRQLREKVPNFMAFCKTPELACEATLQPLRRFPL 69
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D I+FSDILT M + I GPVI +P+ + +V++++ EE++ Y+ A+
Sbjct: 70 DAAIIFSDILTIPDAMGVDLHIAPTVGPVIRNPVRSAQDVNRLQMPAVEEALSYLFDAIR 129
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+ + +++ ++GF G+P+TLA Y+ EG SSK F + + + QP V H LL+K TT
Sbjct: 130 LTVKALDHRVPLIGFAGSPWTLACYMTEGQSSKTFLTARAMLYQQPDVFHTLLQKLTTLT 189
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIV-DTVKQTHP-DLSLILYA 286
Y+ Q GA V +FD+W L+P + +FSL YL QI + V+Q + + LI +
Sbjct: 190 IAYLNAQIKAGADVVMLFDTWGGLLTPSLYRQFSLDYLSQIAAEVVRQKNGRKIPLIFFT 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIN 346
G LE +A +G D V LDWT D+ + RRR+G VA+QGN+DP L + + I+
Sbjct: 250 KNGGQWLESIANSGCDAVGLDWTTDIGQARRRVGDRVALQGNLDPAILLSNPESISTAAV 309
Query: 347 DTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAK 382
D ++ G+ H+ NLGHGI TP ENVA E +
Sbjct: 310 DILKSYGQGSGHVFNLGHGIDPSTPIENVAALVEAVQ 346
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q114U6 | DCUP_TRIEI | 4, ., 1, ., 1, ., 3, 7 | 0.6076 | 0.8782 | 0.9576 | yes | no |
| Q746R5 | DCUP_GEOSL | 4, ., 1, ., 1, ., 3, 7 | 0.4208 | 0.8471 | 0.9617 | yes | no |
| B1XIF6 | DCUP_SYNP2 | 4, ., 1, ., 1, ., 3, 7 | 0.6382 | 0.8808 | 0.9714 | yes | no |
| Q42855 | DCUP_HORVU | 4, ., 1, ., 1, ., 3, 7 | 0.8484 | 0.8549 | 1.0 | N/A | no |
| A5GJR6 | DCUP_SYNPW | 4, ., 1, ., 1, ., 3, 7 | 0.6430 | 0.8782 | 0.9630 | yes | no |
| Q8YQC4 | DCUP_NOSS1 | 4, ., 1, ., 1, ., 3, 7 | 0.5855 | 0.8937 | 0.9857 | yes | no |
| A2BVP6 | DCUP_PROM5 | 4, ., 1, ., 1, ., 3, 7 | 0.5777 | 0.8834 | 0.9855 | yes | no |
| Q31BV1 | DCUP_PROM9 | 4, ., 1, ., 1, ., 3, 7 | 0.5865 | 0.8834 | 0.9855 | yes | no |
| A2C141 | DCUP_PROM1 | 4, ., 1, ., 1, ., 3, 7 | 0.6135 | 0.8782 | 0.9630 | yes | no |
| Q3AYE3 | DCUP_SYNS9 | 4, ., 1, ., 1, ., 3, 7 | 0.6312 | 0.8782 | 0.9630 | yes | no |
| O81220 | DCUP_MAIZE | 4, ., 1, ., 1, ., 3, 7 | 0.8373 | 0.8601 | 0.8447 | N/A | no |
| Q3AKV7 | DCUP_SYNSC | 4, ., 1, ., 1, ., 3, 7 | 0.6371 | 0.8782 | 0.9630 | yes | no |
| O22886 | DCUP2_ARATH | 4, ., 1, ., 1, ., 3, 7 | 0.8167 | 0.9585 | 0.9390 | yes | no |
| Q3MC76 | DCUP_ANAVT | 4, ., 1, ., 1, ., 3, 7 | 0.5855 | 0.8937 | 0.9857 | yes | no |
| Q0I8Y1 | DCUP_SYNS3 | 4, ., 1, ., 1, ., 3, 7 | 0.6253 | 0.8782 | 0.9658 | yes | no |
| B7KKW4 | DCUP_CYAP7 | 4, ., 1, ., 1, ., 3, 7 | 0.6290 | 0.8730 | 0.9546 | yes | no |
| Q7V2A0 | DCUP_PROMP | 4, ., 1, ., 1, ., 3, 7 | 0.5865 | 0.8834 | 0.9855 | yes | no |
| Q8DKW0 | DCUP_THEEB | 4, ., 1, ., 1, ., 3, 7 | 0.5191 | 0.8782 | 0.9883 | yes | no |
| A5GSG3 | DCUP_SYNR3 | 4, ., 1, ., 1, ., 3, 7 | 0.6220 | 0.8911 | 0.9772 | yes | no |
| A1SZJ4 | DCUP_PSYIN | 4, ., 1, ., 1, ., 3, 7 | 0.3982 | 0.8575 | 0.9350 | yes | no |
| A5F3N0 | DCUP_VIBC3 | 4, ., 1, ., 1, ., 3, 7 | 0.4059 | 0.8575 | 0.9323 | yes | no |
| Q7NEK2 | DCUP_GLOVI | 4, ., 1, ., 1, ., 3, 7 | 0.5643 | 0.8834 | 0.9827 | yes | no |
| Q39ZQ8 | DCUP_GEOMG | 4, ., 1, ., 1, ., 3, 7 | 0.4298 | 0.8471 | 0.9617 | yes | no |
| A2CAR8 | DCUP_PROM3 | 4, ., 1, ., 1, ., 3, 7 | 0.5930 | 0.8911 | 0.9772 | yes | no |
| A3PBV7 | DCUP_PROM0 | 4, ., 1, ., 1, ., 3, 7 | 0.5894 | 0.8834 | 0.9855 | yes | no |
| A2BQ64 | DCUP_PROMS | 4, ., 1, ., 1, ., 3, 7 | 0.5894 | 0.8834 | 0.9855 | yes | no |
| P54224 | DCUP_SYNY3 | 4, ., 1, ., 1, ., 3, 7 | 0.6224 | 0.8782 | 0.9685 | N/A | no |
| Q42967 | DCUP_TOBAC | 4, ., 1, ., 1, ., 3, 7 | 0.8301 | 0.9611 | 0.9488 | N/A | no |
| Q9KV26 | DCUP_VIBCH | 4, ., 1, ., 1, ., 3, 7 | 0.4059 | 0.8575 | 0.9323 | yes | no |
| Q7VBL3 | DCUP_PROMA | 4, ., 1, ., 1, ., 3, 7 | 0.6283 | 0.8782 | 0.9658 | yes | no |
| A8G3U9 | DCUP_PROM2 | 4, ., 1, ., 1, ., 3, 7 | 0.5806 | 0.8834 | 0.9855 | yes | no |
| P16891 | DCUP_SYNE7 | 4, ., 1, ., 1, ., 3, 7 | 0.6064 | 0.8886 | 0.9689 | yes | no |
| B3GZV2 | DCUP_ACTP7 | 4, ., 1, ., 1, ., 3, 7 | 0.4161 | 0.8575 | 0.9350 | yes | no |
| Q5N4W6 | DCUP_SYNP6 | 4, ., 1, ., 1, ., 3, 7 | 0.6064 | 0.8886 | 0.9689 | yes | no |
| B2J9R9 | DCUP_NOSP7 | 4, ., 1, ., 1, ., 3, 7 | 0.5907 | 0.8989 | 0.9830 | yes | no |
| Q46LW7 | DCUP_PROMT | 4, ., 1, ., 1, ., 3, 7 | 0.6135 | 0.8782 | 0.9630 | yes | no |
| A3MYI4 | DCUP_ACTP2 | 4, ., 1, ., 1, ., 3, 7 | 0.4161 | 0.8575 | 0.9350 | yes | no |
| Q2JKH3 | DCUP_SYNJB | 4, ., 1, ., 1, ., 3, 7 | 0.5641 | 0.8626 | 0.9624 | yes | no |
| Q1D1F0 | DCUP_MYXXD | 4, ., 1, ., 1, ., 3, 7 | 0.4496 | 0.8134 | 0.9022 | yes | no |
| Q3AEU3 | DCUP_CARHZ | 4, ., 1, ., 1, ., 3, 7 | 0.4670 | 0.8549 | 0.9428 | yes | no |
| Q2JX97 | DCUP_SYNJA | 4, ., 1, ., 1, ., 3, 7 | 0.5641 | 0.8626 | 0.9198 | yes | no |
| A8G8F7 | DCUP_SERP5 | 4, ., 1, ., 1, ., 3, 7 | 0.4053 | 0.8678 | 0.9463 | yes | no |
| B1WVY1 | DCUP_CYAA5 | 4, ., 1, ., 1, ., 3, 7 | 0.6460 | 0.8782 | 0.9576 | yes | no |
| Q7V8B4 | DCUP_PROMM | 4, ., 1, ., 1, ., 3, 7 | 0.5930 | 0.8911 | 0.9772 | yes | no |
| B0JL12 | DCUP_MICAN | 4, ., 1, ., 1, ., 3, 7 | 0.6129 | 0.8834 | 0.9742 | yes | no |
| Q10LR9 | DCUP2_ORYSJ | 4, ., 1, ., 1, ., 3, 7 | 0.7941 | 0.9689 | 0.9589 | yes | no |
| Q7U645 | DCUP_SYNPX | 4, ., 1, ., 1, ., 3, 7 | 0.6401 | 0.8782 | 0.9630 | yes | no |
| A9BAY8 | DCUP_PROM4 | 4, ., 1, ., 1, ., 3, 7 | 0.6253 | 0.8782 | 0.9658 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.1.37 | 0.994 |
| 3rd Layer | 4.1.1 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 386 | |||
| PLN02433 | 345 | PLN02433, PLN02433, uroporphyrinogen decarboxylase | 0.0 | |
| PRK00115 | 346 | PRK00115, hemE, uroporphyrinogen decarboxylase; Va | 1e-176 | |
| TIGR01464 | 338 | TIGR01464, hemE, uroporphyrinogen decarboxylase | 1e-175 | |
| cd00717 | 335 | cd00717, URO-D, Uroporphyrinogen decarboxylase (UR | 1e-173 | |
| pfam01208 | 338 | pfam01208, URO-D, Uroporphyrinogen decarboxylase ( | 1e-135 | |
| COG0407 | 352 | COG0407, HemE, Uroporphyrinogen-III decarboxylase | 1e-133 | |
| cd03465 | 330 | cd03465, URO-D_like, The URO-D _like protein super | 1e-50 | |
| cd00465 | 306 | cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot | 1e-27 | |
| PRK06252 | 339 | PRK06252, PRK06252, methylcobalamin:coenzyme M met | 5e-24 | |
| TIGR01463 | 340 | TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA | 5e-23 | |
| cd03307 | 326 | cd03307, Mta_CmuA_like, MtaA_CmuA_like family | 8e-22 | |
| cd03309 | 321 | cd03309, CmuC_like, CmuC_like | 1e-05 |
| >gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Score = 641 bits (1657), Expect = 0.0
Identities = 242/339 (71%), Positives = 282/339 (83%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
LL+A RGE VERPPVWLMRQAGRYMK Y+ +C+KYPSFRERSE DL VEISLQPW FK
Sbjct: 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFK 60
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
PDGVILFSDILTPL M IPFDI+KGKGPVI +PI ++ +V ++ DPEE +P+VG+AL
Sbjct: 61 PDGVILFSDILTPLPAMGIPFDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGEAL 120
Query: 168 TILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS 227
ILR+EV NEAAVLGFVGAP+TLA+Y+VEGGSSK++ IK++AF+ P+VLHALL K T +
Sbjct: 121 KILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDA 180
Query: 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287
+ +YV YQ D GAQ VQIFDSWA LSPVDFEEFS PYL++IVD VK HPD+ LILYA+
Sbjct: 181 VIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240
Query: 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347
GSGGLLERLA TGVDV+ LDWTVDMA+ RRRLG DVAVQGNVDP LFGSK+ I + D
Sbjct: 241 GSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRD 300
Query: 348 TVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
V+KAG HILNLGHG+ VGTPEENVAHFF+VA+ +RY
Sbjct: 301 VVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELRY 339
|
Length = 345 |
| >gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 494 bits (1274), Expect = e-176
Identities = 163/332 (49%), Positives = 222/332 (66%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A+RGE V+R PVW+MRQAGRY+ Y+ + K SF E +N +L E++LQP +
Sbjct: 8 FLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYG 67
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D ILFSDILTP M + D +G+GPV +PI T+A+V+++ DPEE +PYV +A+
Sbjct: 68 VDAAILFSDILTPPDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDLPYVLEAV 127
Query: 168 TILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS 227
+LR E+ E ++GF GAP+TLA+Y+VEGG SK ++K K + +++P++LHALL K +
Sbjct: 128 RLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADA 187
Query: 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287
Y+ Q + GAQAVQIFDSWA LSP D+ EF LPY+K+IV +K+ HPD+ +IL+
Sbjct: 188 TIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGK 247
Query: 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347
G+G LLE +A TG DVV LDWTVD+AE RRR+G A+QGN+DP L + I +
Sbjct: 248 GAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRA 307
Query: 348 TVRKAGRWKHILNLGHGIKVGTPEENVAHFFE 379
+ G HI NLGHGI TP ENV E
Sbjct: 308 ILDGGGGPGHIFNLGHGILPETPPENVKALVE 339
|
Length = 346 |
| >gnl|CDD|233423 TIGR01464, hemE, uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Score = 490 bits (1264), Expect = e-175
Identities = 165/336 (49%), Positives = 224/336 (66%), Gaps = 1/336 (0%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A +GE V+RPPVW MRQAGRY+ Y+ + K F E N DL VE++LQP F
Sbjct: 2 FLRAAKGEVVDRPPVWFMRQAGRYLPEYRELRAKAGDFLELCRNPDLAVEVTLQPIRRFG 61
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D I+FSDIL PL + + + ++GKGPVI +PI T +V++++EFDPE + YV +A+
Sbjct: 62 VDAAIIFSDILVPLQALGLDVEFVEGKGPVISNPIRTAEDVERLKEFDPESELSYVYEAI 121
Query: 168 TILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS 227
+LREE+ E ++GF GAP+TLASY++EGG SK F+K KR + +P+ LHALL K T +
Sbjct: 122 KLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEALHALLNKLTDA 181
Query: 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287
+Y+ Q GAQAVQIFDSWA LSP DFEEF LPYL +I++ VK P + +IL+A
Sbjct: 182 TIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLAKIIEEVKARLPGVPVILFAK 241
Query: 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347
G+G LLE LA TG DVV LDW+VD+ E R+R+G VA+QGN+DP L+ ++ + ++
Sbjct: 242 GAGHLLEELAETGADVVGLDWSVDLKEARKRVGDGVAIQGNLDPAVLYAPEEALEEKVER 301
Query: 348 TVRKA-GRWKHILNLGHGIKVGTPEENVAHFFEVAK 382
+ G+ +I NLGHGI TP ENV E
Sbjct: 302 ILEAFGGKSGYIFNLGHGILPDTPPENVKALVEYVH 337
|
This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 338 |
| >gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
Score = 486 bits (1253), Expect = e-173
Identities = 170/336 (50%), Positives = 230/336 (68%), Gaps = 2/336 (0%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
L+A+RGE V+RPPVW MRQAGRY+ Y+ + KY SF E +N +L E++LQP F
Sbjct: 1 LRALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGV 59
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALT 168
D I+FSDIL PL M + + ++GKGPVI +PI T+A+VD++ DPEE + YV +A+
Sbjct: 60 DAAIIFSDILVPLEAMGMDVEFVEGKGPVIPNPIRTEADVDRLLVPDPEEELSYVYEAIK 119
Query: 169 ILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSM 228
+ R+E+ E ++GF GAP+TLASY++EGG SK F+K K++ ++ P+ HALL K T +
Sbjct: 120 LTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDAT 179
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288
+Y++ Q + GAQAVQIFDSWA LSP DFEEF LPYLK+I++ VK+ P + +IL+A G
Sbjct: 180 IEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKG 239
Query: 289 SGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDT 348
+GGLLE LA G DVV LDW VD+ E R+RLGP VA+QGN+DP L+ K+ I +
Sbjct: 240 AGGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRI 299
Query: 349 VRKAGR-WKHILNLGHGIKVGTPEENVAHFFEVAKA 383
++ G HI NLGHGI TP ENV E +
Sbjct: 300 LKAFGGAPGHIFNLGHGILPDTPPENVKALVEAVHS 335
|
This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). Length = 335 |
| >gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D) | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-135
Identities = 161/339 (47%), Positives = 218/339 (64%), Gaps = 12/339 (3%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
LL+A+RGE V+R PVWLMRQAGRY+ Y+ + SF E ++ +L E++LQP+ F
Sbjct: 6 LLRALRGEPVDRTPVWLMRQAGRYLPEYRALRAGA-SFLEACKDPELAAEVTLQPYRRFG 64
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEES--VPYVGK 165
D ILFSDIL M D +G+GPV+ +PI T +V+++ DP E +PYV +
Sbjct: 65 LDAAILFSDILVEAEAMGCEVDFGEGEGPVVENPIRTPEDVEKLEVPDPLEDERLPYVLE 124
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
A+ ILR+E+ +E ++GFVG PFTLASY+VEG F K K+L + P+++HALL K T
Sbjct: 125 AIRILRKELGDEVPLIGFVGGPFTLASYLVEG-----FEKFKKLMYKDPELVHALLDKLT 179
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285
++ +Y++ Q + GA A+QIFDSWA LSP DF EF LPYLK+IVD VK P IL+
Sbjct: 180 DAVIEYLKAQIEAGADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDEVKARGPGPV-ILH 238
Query: 286 ASGSG-GLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNR 344
G+G +LE +A TG DV+SLDWTVD+AE +R +G DVA+QGN+DP L G+ + I
Sbjct: 239 ICGNGTPILEDMAETGADVISLDWTVDLAEAKRIVG-DVALQGNLDPALLLGTPEEIEAE 297
Query: 345 INDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAK 382
+ + + HI NLGHGI TP ENV E
Sbjct: 298 VKEILEAGDGGPGHIFNLGHGIPPDTPPENVKALVEAVH 336
|
Length = 338 |
| >gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 383 bits (987), Expect = e-133
Identities = 149/339 (43%), Positives = 212/339 (62%), Gaps = 6/339 (1%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A++G+ V+R PVW+MRQAGRY+ Y+ + EK SF E +N +L E++LQP +
Sbjct: 10 FLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYG 69
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQ-VREFDPEESVPYVGKA 166
D ILFSDIL P + +GKGP + PI +V+ V DPE +PYV A
Sbjct: 70 LDAAILFSDILVPPEALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDA 129
Query: 167 LTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTT 226
+ +LRE++ E ++GF G+P+TLASY++EGG SK FSK K + +++P +HALL K T
Sbjct: 130 IKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTD 189
Query: 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA 286
++ +Y++ Q + GA AVQIFDSWA LS +D++EF LPY+K+IV VK+ + +I +
Sbjct: 190 AVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVPVIHFC 249
Query: 287 SGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI---TN 343
G+G LLE +A TG DV+ +DW VD+ E ++RLG VA+QGN+DP L+ + I
Sbjct: 250 KGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVK 309
Query: 344 RINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382
RI + +I NLGHGI TP ENV E
Sbjct: 310 RILEDGGDG--SGYIFNLGHGILPETPPENVKALVEAVH 346
|
Length = 352 |
| >gnl|CDD|239548 cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-50
Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 23/343 (6%)
Query: 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKP 108
A+ GE +R PV + G + + I + E L E + + F P
Sbjct: 1 AAALNGEKPDRVPVGPLLHGG----AAEFIGISLKEYYTDPE---LGAEAQIALYKKFGP 53
Query: 109 DGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTD-AEVDQVREFDPEES--VPYVGK 165
D + +FSD+ + P + P+ D E D + DP +S +P + +
Sbjct: 54 DAIKVFSDLFVEAEAFGAEIRYPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLE 113
Query: 166 ALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFT 225
A+ +L+EE+ + V+G VG PFTLAS ++ SK L ++ P+++H LL K T
Sbjct: 114 AIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKFLMLLYTDPELVHKLLEKCT 167
Query: 226 TSMAKYVQYQADNGAQAVQIFDSWA--TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI 283
+ +Y + GA + I D WA + LSP DF+EFSLPYLK++ D +K +
Sbjct: 168 EFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHH 227
Query: 284 LYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALF--GSKDFI 341
+ +LE +A G DV S+D TVD+AE ++++G + GN+DP + GS + I
Sbjct: 228 -NCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEI 286
Query: 342 TNRINDTVRKAGRWKH--ILNLGHGIKVGTPEENVAHFFEVAK 382
+ + + K + IL+ G I TP EN+ + +
Sbjct: 287 KEEVKELLEKLLKGGGGYILSSGCEIPPDTPIENIKAMIDAVR 329
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. Length = 330 |
| >gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 71/329 (21%), Positives = 127/329 (38%), Gaps = 31/329 (9%)
Query: 61 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTP 120
PV Q G S + + P ++E +VE P V + D+L
Sbjct: 1 PVQCEGQTGIMEASETMAISEEPGETSKAEWGITLVEPEEIPLDVI----PVHEDDVLKV 56
Query: 121 LSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAV 180
+ + P D E D RE + +T +R E
Sbjct: 57 AQALGEWAFRYYSQAPS---VPEIDEEEDPFRE-------APALEHITAVRS--LEEFPT 104
Query: 181 LGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGA 240
G G PFT + + G + +P+ +H L+ T + +Y + + GA
Sbjct: 105 AGAAGGPFTFTHHSMSMGD------ALMALYERPEAMHELIEYLTEFILEYAKTLIEAGA 158
Query: 241 QAVQIFDSWATE----LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERL 296
+A+QI + ++ L P F++F+LP K++ + K + + LLE +
Sbjct: 159 KALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEY-KAAGEVPIVHHSCYDAADLLEEM 217
Query: 297 ALTGVDVVSLDWTV-DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRW 355
GVDV+S D TV + E ++G + G VDPG L + + ++ + V + G
Sbjct: 218 IQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP- 276
Query: 356 KHILNLGHGIKVGTP--EENVAHFFEVAK 382
+I+N G+ + E++ ++
Sbjct: 277 HYIINPDCGLGPDSDYKPEHLRAVVQLVD 305
|
Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc. Length = 306 |
| >gnl|CDD|235753 PRK06252, PRK06252, methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 79/250 (31%), Positives = 118/250 (47%), Gaps = 23/250 (9%)
Query: 141 PINTDAEVDQVREFDPEES-VPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGS 199
PI D E ++ + EE +P V +A+ IL+E+V E ++ + P +LAS ++
Sbjct: 100 PIKKDVEYRKLPDDLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMG--- 156
Query: 200 SKHFSK--IKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATE--LSP 255
K+F K IK+ P++ H L T +Y + Q + GA + I D A+ L P
Sbjct: 157 PKNFLKWLIKK-----PELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGP 211
Query: 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG-SGGLLERLALTGVDVVSLDWTVDMAE 314
FEEF LPYL +I+D VK L IL+ G +LE +A G D +S+D VD+
Sbjct: 212 KMFEEFVLPYLNKIIDEVK----GLPTILHICGDLTSILEEMADCGFDGISIDEKVDVKT 267
Query: 315 GRRRLGPDVAVQGNVDPGA--LFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE 372
+ +G A+ GNV L G+ + + + IL G GI TP E
Sbjct: 268 AKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLEDG---VDILAPGCGIAPKTPLE 324
Query: 373 NVAHFFEVAK 382
N+ E K
Sbjct: 325 NIKAMVEARK 334
|
Length = 339 |
| >gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 5e-23
Identities = 82/350 (23%), Positives = 145/350 (41%), Gaps = 29/350 (8%)
Query: 48 LLKAVRGEDVERPPVWLMRQAG--RYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHV 105
L AV G+ V+ P + Q M+ ++ E + + + +++ +
Sbjct: 9 LFAAVTGQTVDDVPPCVPTQTLTTELMRECGA------TWPEAHRDGEAMAHLAIAAYEK 62
Query: 106 FKPDGVILFSDILTPLSGMNIPFDIIKGKGP-VIFDPINT---DAEVDQVREFDPEESVP 161
F + V D+ T + D P V P T D + P +P
Sbjct: 63 FGGEAVRPPFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGR-IP 121
Query: 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALL 221
V +A+ ILRE + ++G +G PFTLA ++ G S+ S I + P A+L
Sbjct: 122 VVLEAIKILRERYGDTHPIIGPMGGPFTLAQLMI--GVSEFLSWI----STDPDYAKAVL 175
Query: 222 RKFTTSMAKYVQYQADNGAQAVQIFDSWATE--LSPVDFEEFSLPYLKQIVDTVKQTHPD 279
+ Y + + GA + I D +A+ +SP ++EF LPY K++ +K+
Sbjct: 176 ELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI--G 233
Query: 280 LSLILYASG-SGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALF--G 336
+L+ G + +L +A G S+D M +R +G ++ GN+ P + G
Sbjct: 234 GITVLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNG 293
Query: 337 SKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
+ + + + + G I+ G I TP EN+ E K+I+Y
Sbjct: 294 TPEKVKKLAKEVLYNGG---DIVMPGCDIDWMTPLENLKAMIEACKSIKY 340
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. Length = 340 |
| >gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 8e-22
Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 20/235 (8%)
Query: 154 FDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQ 213
F +P V +A+ IL+E+ E V+G + P +LAS++ ++F K +
Sbjct: 105 FLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG---VENFLKWLIK---K 158
Query: 214 PKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATE--LSPVDFEEFSLPYLKQIVD 271
P+ + L T + +Y + Q + GA + I D A+ +SP +EEF+LPY K+IV
Sbjct: 159 PEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVK 218
Query: 272 TVKQTHPDLSLILYASG-SGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVD 330
+ IL+ G + +LE +A G D +S+D VD+ + +G A+ GNV
Sbjct: 219 ELH----GCPTILHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVS 274
Query: 331 PGA--LFGSKDFITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAK 382
P L G+ + + RK IL G GI TP N+ E K
Sbjct: 275 PSQTLLNGTPE----DVKAEARKCLEDGVDILAPGCGIAPRTPLANLKAMVEARK 325
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. Length = 326 |
| >gnl|CDD|239425 cd03309, CmuC_like, CmuC_like | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 202 HFSKIKRLAFSQPKVLHALLRKFTTSMAK-YVQYQADNGAQAVQIFDSWATE----LSPV 256
+ +P+ H L T + K Y + + D ++ +SP
Sbjct: 131 SMEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPA 190
Query: 257 DFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT-VDMAEG 315
F EF LP +++I D ++ L + + L+ +A GVD ++ T + AE
Sbjct: 191 TFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAEL 250
Query: 316 RRRLGPDVAVQGNVDPGAL 334
RR LG V + G +D AL
Sbjct: 251 RRLLGDKVVLAGAIDDVAL 269
|
Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism. Length = 321 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 100.0 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 100.0 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 100.0 | |
| COG0407 | 352 | HemE Uroporphyrinogen-III decarboxylase [Coenzyme | 100.0 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 100.0 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 100.0 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 100.0 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 100.0 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 100.0 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 100.0 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 100.0 | |
| cd03308 | 378 | CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro | 100.0 | |
| cd00465 | 306 | URO-D_CIMS_like The URO-D_CIMS_like protein superf | 100.0 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 100.0 | |
| PRK04326 | 330 | methionine synthase; Provisional | 99.92 | |
| PRK00957 | 305 | methionine synthase; Provisional | 99.83 | |
| cd03311 | 332 | CIMS_C_terminal_like CIMS - Cobalamine-independent | 99.69 | |
| cd03310 | 321 | CIMS_like CIMS - Cobalamine-independent methonine | 99.51 | |
| PRK01207 | 343 | methionine synthase; Provisional | 99.32 | |
| PRK08575 | 326 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.22 | |
| PRK09121 | 339 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.22 | |
| PRK06233 | 372 | hypothetical protein; Provisional | 99.14 | |
| PRK06052 | 344 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.1 | |
| PRK06520 | 368 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.05 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.04 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.0 | |
| cd03312 | 360 | CIMS_N_terminal_like CIMS - Cobalamine-independent | 99.0 | |
| PF01717 | 324 | Meth_synt_2: Cobalamin-independent synthase, Catal | 98.97 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 98.96 | |
| COG0620 | 330 | MetE Methionine synthase II (cobalamin-independent | 98.88 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 98.78 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.77 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.72 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 97.39 | |
| PF08267 | 310 | Meth_synt_1: Cobalamin-independent synthase, N-ter | 97.19 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 95.84 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 95.72 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 95.48 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 95.27 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 95.2 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), | 95.18 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 95.05 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.0 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 94.91 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 94.88 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 94.76 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.62 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 94.32 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.28 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.27 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 94.2 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 94.12 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 93.97 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 93.89 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 93.46 | |
| PRK07094 | 323 | biotin synthase; Provisional | 93.42 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 93.38 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 93.26 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 93.18 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 93.06 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 93.05 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 92.98 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 92.86 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 92.85 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 92.83 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 92.6 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 92.49 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 92.2 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 92.15 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.03 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 92.01 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 91.83 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 91.57 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 91.47 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 91.47 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 91.31 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 91.18 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 91.17 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 91.11 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 90.91 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 90.88 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 90.85 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 90.82 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 90.8 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 90.75 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 90.53 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 90.17 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.16 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 90.11 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 90.07 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 90.07 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 90.04 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 89.98 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 89.78 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 89.69 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 89.62 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 89.6 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 89.51 | |
| PRK06438 | 292 | hypothetical protein; Provisional | 89.43 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 89.36 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 89.31 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 89.2 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 89.14 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 89.02 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 88.8 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 88.72 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 88.7 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 88.67 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 88.66 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 88.62 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 88.54 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 88.43 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 88.43 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 88.42 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 88.35 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 88.34 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 88.23 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 88.06 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 88.03 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 87.94 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 87.83 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 87.76 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 87.72 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 87.57 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 87.45 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 87.27 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 87.2 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 87.18 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 87.1 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 86.99 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 86.74 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 86.69 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 86.61 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 86.61 | |
| PRK14057 | 254 | epimerase; Provisional | 86.46 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 86.4 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 86.39 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 86.31 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 86.15 | |
| PRK08508 | 279 | biotin synthase; Provisional | 85.74 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 85.32 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 85.18 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 85.09 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 85.08 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 84.87 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 84.85 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 84.72 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 84.36 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 83.96 | |
| PRK06256 | 336 | biotin synthase; Validated | 83.95 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 83.93 | |
| PRK15452 | 443 | putative protease; Provisional | 83.75 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 83.74 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 83.7 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 83.25 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 83.24 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 83.19 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 83.13 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 83.04 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 82.88 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 82.78 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 82.76 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 82.16 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 82.05 | |
| PRK10812 | 265 | putative DNAse; Provisional | 81.9 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 81.8 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 81.58 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 81.47 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 81.33 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 81.18 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 80.73 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 80.65 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 80.53 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 80.28 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 80.25 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 80.16 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 80.12 |
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-75 Score=566.67 Aligned_cols=344 Identities=47% Similarity=0.812 Sum_probs=326.6
Q ss_pred CCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccc
Q 016596 41 VSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTP 120 (386)
Q Consensus 41 ~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~ 120 (386)
|++|+||++++++|+++||||||+|.|+|+|+|+|.+++.++.||.|++.||+++++++++++++||+|++++++|+.++
T Consensus 1 ~~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~ 80 (346)
T PRK00115 1 TELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTP 80 (346)
T ss_pred CCcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhh
Confidence 57899999999999999999999999999999999999988856999999999999999999999999999999999999
Q ss_pred cccCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCc
Q 016596 121 LSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSS 200 (386)
Q Consensus 121 ~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~ 200 (386)
+++||+++.|+++.+|++.+++++++|+++|++++++++++.++++++++++++++++|++++++||||+|++|++|+++
T Consensus 81 ~ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~ 160 (346)
T PRK00115 81 PDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGS 160 (346)
T ss_pred HHHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCCCCchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCC
Confidence 99999999999887898888999999999998888778999999999999999999999999999999999999986667
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC
Q 016596 201 KHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL 280 (386)
Q Consensus 201 ~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~ 280 (386)
+++++++++++++||.+|++|+.+++.+++|+++++++|||+|+++|+++++|||++|+||++||+|++++.+++.+++
T Consensus 161 ~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~- 239 (346)
T PRK00115 161 KDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPD- 239 (346)
T ss_pred ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999997433
Q ss_pred cEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEE
Q 016596 281 SLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHIL 359 (386)
Q Consensus 281 ~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Il 359 (386)
..++|+||++. .++.+.++|++++++|+.+|++++++.+|++++|+||+||..|.||+|+|+++|+++|+.++++||||
T Consensus 240 ~~ilh~cg~~~~~~~~~~~~~~~~is~d~~~dl~~~k~~~g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl 319 (346)
T PRK00115 240 VPVILFGKGAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIF 319 (346)
T ss_pred CCEEEEcCCcHHHHHHHHhcCCCEEeeCCCCCHHHHHHHcCCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeee
Confidence 45889999887 68999999999999999999999999999999999999997668999999999999999987789999
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++||++|++||+|||+||++++|+|+
T Consensus 320 ~~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 320 NLGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred ecCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999997
|
|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-74 Score=557.67 Aligned_cols=339 Identities=71% Similarity=1.195 Sum_probs=321.3
Q ss_pred HHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCce
Q 016596 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIP 127 (386)
Q Consensus 48 v~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~ 127 (386)
++++++|+++||+|||+|+|+|+|.++|+.+++...+|+|++.|||++++++++++++|++|++++++|+.+++|+||++
T Consensus 1 ~~~~~~g~~~dr~Pv~~~~q~g~~~~ey~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~di~~~~ea~G~~ 80 (345)
T PLN02433 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFKPDGVILFSDILTPLPAMGIP 80 (345)
T ss_pred ChHHHCCCCCCCCCeeeeecchhccHHHHHHHHhcCCHHHHhCCHHHHHHHHHHHHHHhCCCeEEecCCCCcCHHHcCCe
Confidence 46899999999999999999999999999886655469999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHH
Q 016596 128 FDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIK 207 (386)
Q Consensus 128 ~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~ 207 (386)
+.|+++.+|++.+||++++||++|.+++++++++.++++++++++++++++|++++++||||+|+++++|++++++++++
T Consensus 81 i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~l~~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~ 160 (345)
T PLN02433 81 FDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIK 160 (345)
T ss_pred EEECCCCCCccCCCCCCHHHHHhccCCCchhhhHHHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHH
Confidence 99998777877889999999999988777889999999999999999999999999999999999999887788899999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 208 RLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 208 ~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++++++||.+|++|+++++.+++|+++++++|+++++++|++++++||++|+||++||+|++++.+++.+++.++++|+|
T Consensus 161 ~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c 240 (345)
T PLN02433 161 KMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240 (345)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998644568999999
Q ss_pred CCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC
Q 016596 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKV 367 (386)
Q Consensus 288 G~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~ 367 (386)
|+..+++.+.++|++++++|+.+|+.++++.+|++++|+||+||.+|.||+|+|+++|+++|+.++++||||++||++|+
T Consensus 241 G~~~~~~~~~~~~~~~i~~d~~~dl~e~~~~~g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~ 320 (345)
T PLN02433 241 GSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLV 320 (345)
T ss_pred CCHHHHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC
Confidence 99867899999999999999999999999999999999999999766999999999999999998766799999999999
Q ss_pred CCcHHHHHHHHHHHHhhcC
Q 016596 368 GTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~~yg~ 386 (386)
+||+||++||++++|+||+
T Consensus 321 ~tp~eNi~a~v~av~~~~~ 339 (345)
T PLN02433 321 GTPEENVAHFFDVARELRY 339 (345)
T ss_pred CCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999985
|
|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=538.86 Aligned_cols=336 Identities=51% Similarity=0.901 Sum_probs=317.4
Q ss_pred HHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCc
Q 016596 47 MLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNI 126 (386)
Q Consensus 47 Rv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~ 126 (386)
|++++++|+++||+|+|+|.++|+++++|++++.+..||.|++.||+++++++++++++|++|++++++|+.+++|+||+
T Consensus 1 ~~~~~~~g~~~dr~Pv~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~d~~~~~ea~G~ 80 (338)
T TIGR01464 1 LFLRAAKGEEVDRPPVWLMRQAGRYLPEYRELRAKAPDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPLQALGL 80 (338)
T ss_pred ChhHHhCCCCCCCCCeeeehhcccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccccccHHHcCC
Confidence 57899999999999999999999999999999988756999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHH
Q 016596 127 PFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206 (386)
Q Consensus 127 ~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~ 206 (386)
++.|+++.+|.+.+++++.+||++|++++++++++.++++++++++++++++|++++++||||+|++|++|+..++++++
T Consensus 81 ~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~ 160 (338)
T TIGR01464 81 DVDFVEGKGPVIPEPIRTPEDVERLKEFDPESELPYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKA 160 (338)
T ss_pred eeEecCCCCCccCCCCCCHHHHHhcCCCChhhchHHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHH
Confidence 99999887797788999999999999887778999999999999999999999999999999999999987677788899
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 207 ~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
+++++++||.+|++|+++++.+++|+++++++|+|+++++|+++++|||++|+||++||++++++.+++..++ ..++|.
T Consensus 161 ~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~-~~ilh~ 239 (338)
T TIGR01464 161 KRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPN-VPVILF 239 (338)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986323 357999
Q ss_pred cCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeEEecCCC
Q 016596 287 SGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHILNLGHG 364 (386)
Q Consensus 287 cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~ 364 (386)
||++. .++.+.++|++++++++.+|+.++++.+|++++|+|||||..|+||+|+|+++|+++|+.++ ++||||++||+
T Consensus 240 cg~~~~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~ 319 (338)
T TIGR01464 240 AKGAGHLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRYIFNLGHG 319 (338)
T ss_pred eCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCceecCCCc
Confidence 99887 68999999999999999999999999999999999999997678999999999999999986 68999999999
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 016596 365 IKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~ 383 (386)
+|++||+|||+||++++|+
T Consensus 320 i~~~tp~eni~a~v~a~~~ 338 (338)
T TIGR01464 320 ILPDTPPENVKALVEYVHS 338 (338)
T ss_pred CCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999984
|
This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. |
| >COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=527.66 Aligned_cols=342 Identities=42% Similarity=0.761 Sum_probs=326.1
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccc
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLS 122 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e 122 (386)
++++|+++|++||++||+|||+++|||||+++|+.+++...+|.|+|.|||+++|+++++.++|++|++++++|+.+.++
T Consensus 5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~ 84 (352)
T COG0407 5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE 84 (352)
T ss_pred chHHHHHHHHcCCCCCCCCeEeeecccccccHHHHHHHhcCCHHHHhcCHHHHHHHHhhhHHHhCCCeeeeehhhcccHH
Confidence 77999999999999999999999999999999999998876799999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCCccCCCCCChHHHhccCC-CCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCch
Q 016596 123 GMNIPFDIIKGKGPVIFDPINTDAEVDQVRE-FDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSK 201 (386)
Q Consensus 123 ~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~-~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~ 201 (386)
+||++++|.++.+|.+..|+.+.++.+.+.+ +++.++++.++++++++++++++++|++|+++||||+|+++++||+++
T Consensus 85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~ 164 (352)
T COG0407 85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK 164 (352)
T ss_pred HcCCeeecCCCCCCccCCCCCchhhhhhccCCcCcccchHHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcc
Confidence 9999999999999998889999999777764 677789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc
Q 016596 202 HFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS 281 (386)
Q Consensus 202 ~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~ 281 (386)
+|.+++.+|+++||.+|++|+++++.++.|+++|+++|||.|+++|+|++-+++..|++|+.||.+++++.+++.+++ +
T Consensus 165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~ 243 (352)
T COG0407 165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-V 243 (352)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987544 4
Q ss_pred EEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeEE
Q 016596 282 LILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHIL 359 (386)
Q Consensus 282 ~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~Il 359 (386)
.++|.|++.. +++.+.++|+|++++|+.++++++++.++++++++||+||..|++++|+|+++++++|+.+. +.||||
T Consensus 244 pii~f~~ga~~~l~~m~~~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~If 323 (352)
T COG0407 244 PVIHFCKGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIF 323 (352)
T ss_pred cEEEECCCcHHHHHHHHhcCCcEEeeccccCHHHHHHHhCCCceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCCcee
Confidence 5899999987 68999999999999999999999999999999999999997779999999999999999998 569999
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++||+|+|+||+||+++|++++++|+
T Consensus 324 nlGhGI~P~tp~e~v~~lve~v~~~~ 349 (352)
T COG0407 324 NLGHGILPETPPENVKALVEAVHEYS 349 (352)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999997
|
|
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=530.14 Aligned_cols=332 Identities=49% Similarity=0.871 Sum_probs=312.4
Q ss_pred HHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCceEE
Q 016596 50 KAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFD 129 (386)
Q Consensus 50 aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~~~ 129 (386)
++++|+++||||+|+|.++|+|+|+|.+++.++ ||.|++.|||++++++++++++|++|++++++|+.+++|+||+++.
T Consensus 2 ~a~~g~~~DriPv~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~e~~~e~~~~~~~~~g~D~~~i~~d~~~~~ea~G~~i~ 80 (335)
T cd00717 2 RALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDVE 80 (335)
T ss_pred ccccCCCCCCCCeeeehhcccccHHHHHHHccC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHcCCeEE
Confidence 689999999999999999999999999999888 6999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHH
Q 016596 130 IIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRL 209 (386)
Q Consensus 130 ~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~ 209 (386)
|+++.+|.+.+++++.+||++++.++++++++.++++++++++++++++|++++++||||+|++|++++..++|++++++
T Consensus 81 ~~~~~~p~~~~~i~~~~d~~~~~~~~~~~~~~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~ 160 (335)
T cd00717 81 FVEGKGPVIPNPIRTEADVDRLLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKM 160 (335)
T ss_pred eCCCCCCcCCCCCCCHHHHHhccCCChhhhhHHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHH
Confidence 99877887788999999999987777778999999999999999999999999999999999999975556778889999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC
Q 016596 210 AFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS 289 (386)
Q Consensus 210 l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~ 289 (386)
++++||.+|++++.+++.+++++++++++|+|+|+++|+++++|||++|+||++||+|++++.+++.+++. .++|+||+
T Consensus 161 l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~-~ilh~cg~ 239 (335)
T cd00717 161 MYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGV-PVILFAKG 239 (335)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974333 47888887
Q ss_pred cc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCC
Q 016596 290 GG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHILNLGHGIKV 367 (386)
Q Consensus 290 ~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~ 367 (386)
+. +++.+.++|++++++++.+|+.++++.+|++++|+||+||..|.+|+|+|+++|+++|+.++ ++||||++||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~ 319 (335)
T cd00717 240 AGGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILP 319 (335)
T ss_pred CHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCC
Confidence 76 68999999999999999999999999999999999999997668899999999999999998 58999999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 016596 368 GTPEENVAHFFEVAKA 383 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~~ 383 (386)
+||+||++||++++|+
T Consensus 320 ~tp~eNi~a~v~a~~~ 335 (335)
T cd00717 320 DTPPENVKALVEAVHS 335 (335)
T ss_pred CcCHHHHHHHHHHHhC
Confidence 9999999999999984
|
This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). |
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=521.47 Aligned_cols=336 Identities=35% Similarity=0.576 Sum_probs=278.9
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccc
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLS 122 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e 122 (386)
|||||++++++||++||||||+++|+++++..|.....+++ +++++.||+++|+++++++++|++|++.+++|..++++
T Consensus 1 T~~er~~~~~~~~~~DrvPv~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ae~~~~~~~~~~~D~~~~~~d~~~~ae 79 (343)
T PF01208_consen 1 TSRERVLAALNGEPVDRVPVWPMRQAGRYLPEYAAEKTGIS-FPEYCRDPEKMAEAQIKAYEKFGPDFIKIPFDLTVEAE 79 (343)
T ss_dssp -S--HHHHHHTT---SS--B--TTSSSTTSHHHHHHHHHSS-HHHHCTSHHHHHHHHHHHHHHC--SEEE-S--TTHHHH
T ss_pred CchhHHHHHHcCCCCCCcCeEccccccccChHHHHHhcCcc-hHHHhcCHHHHHHHHHHHHHhcCCCEEEecCceeehHH
Confidence 57999999999999999999998888888888777666664 99999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCCccCCCCCChHHHhccCCCCC--CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCc
Q 016596 123 GMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP--EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSS 200 (386)
Q Consensus 123 ~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~--~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~ 200 (386)
+||+++.++++.+|.+.+++.+++|+++|+.+++ +++++.++++++++++++++++|+++++.|||++++.|+.|+
T Consensus 80 a~G~~v~~~~~~~P~~~~~~~~~eD~~~l~~~~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~-- 157 (343)
T PF01208_consen 80 ALGCEVEFPEDDGPSVEEPIISPEDLDKLKIPDPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGR-- 157 (343)
T ss_dssp GCTTEEEEETTTEEEESS---SHHHHHTS--GGHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSS--
T ss_pred HcCCeEEecCCCCCccccCcCCHHHHhhhcccCcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCC--
Confidence 9999999999878888665449999999999876 578999999999999999999999999999999999999321
Q ss_pred hhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCC
Q 016596 201 KHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDL 280 (386)
Q Consensus 201 ~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~ 280 (386)
++++++++++++||.++++++++++.+++++++++++|+|+|+++|.++++|||++|+||++||+||+++.+|+. |+
T Consensus 158 -g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~--g~ 234 (343)
T PF01208_consen 158 -GFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEA--GK 234 (343)
T ss_dssp -S-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHH--ET
T ss_pred -CHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHh--CC
Confidence 255788999999999999999999999999999999999999999977889999999999999999999999998 46
Q ss_pred -cEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-ccCCCHHHHHHHHHHHHHH-cC-CC
Q 016596 281 -SLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-ALFGSKDFITNRINDTVRK-AG-RW 355 (386)
Q Consensus 281 -~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l~gt~eev~~~v~~~i~~-~~-~~ 355 (386)
++++|+||++. .++.+.++|++++++++.+|+.++++++|++++|+||+||. .|.||+|+|+++|+++|+. .+ ++
T Consensus 235 ~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~ 314 (343)
T PF01208_consen 235 DPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGG 314 (343)
T ss_dssp E-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSS
T ss_pred CceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCC
Confidence 89999999997 79999999999999999999999999999999999999994 5579999999999999995 55 89
Q ss_pred CeEEecCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 356 KHILNLGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 356 g~Ils~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
||||++||++|++||+||++||++++|+|
T Consensus 315 gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 315 GFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp SEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-69 Score=481.23 Aligned_cols=346 Identities=50% Similarity=0.885 Sum_probs=334.1
Q ss_pred CCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc
Q 016596 40 NVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119 (386)
Q Consensus 40 ~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~ 119 (386)
++..|+..+++|.+||++||+|||+|+|+|+|+++|+++++++ +|.+.|.|||...|.+++++++|.+|++++++|+.+
T Consensus 7 fp~~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~-~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILv 85 (359)
T KOG2872|consen 7 FPALKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQ-DFFETCRNPELACEITLQPLRRFRLDAAIIFSDILV 85 (359)
T ss_pred CCCCCchHHHHHhcCcccCCCchHHHHHhhcccHHHHHHHHhc-cHHHhcCCccceeeEecchhhccCCceeEEeecccc
Confidence 7788999999999999999999999999999999999999988 599999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCCCccCCCCCChHHHhccCCCCC-CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCC
Q 016596 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP-EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGG 198 (386)
Q Consensus 120 ~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~-~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~ 198 (386)
...++|..+.+.++.+|.+-.|+.+++|++++.++.+ ...++.+.+|+++++.++++++|++|++++|||++++++.||
T Consensus 86 ipqalgm~v~m~egkGP~~p~Plr~~eDl~rl~~~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGG 165 (359)
T KOG2872|consen 86 IPQALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGG 165 (359)
T ss_pred CchhcCceEEEeeccCCCCCCCCCCHHHHHHhccCcchhhhcchHHHHHHHHHHHhcCccceeeecCCchhhheeeecCC
Confidence 9999999999999999999889999999999987665 236899999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC
Q 016596 199 SSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP 278 (386)
Q Consensus 199 ~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~ 278 (386)
+++.|.++-.+++..||..|.+|.++|+.+.+|+..|+++||..++++|+|++-+||++|+||.+||+++|+++++++.+
T Consensus 166 gSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~ 245 (359)
T KOG2872|consen 166 GSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLP 245 (359)
T ss_pred CchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC-----cEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC
Q 016596 279 DL-----SLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 279 ~~-----~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~ 353 (386)
.. |.+++.-|++..|+.++++|.|++++|+.+|++|+++..|.++++.||+||..|+||+|+|.+.+++.++.+|
T Consensus 246 ~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 246 ELGLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred hhcCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 55 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
..+||++.||++-++||+|++..++|++|+++|
T Consensus 326 ~~ryI~NLGHGi~p~tp~e~v~~f~E~~h~~~~ 358 (359)
T KOG2872|consen 326 KSRYIANLGHGITPGTPPEHVAHFVEAVHKIGY 358 (359)
T ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999987
|
|
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=503.75 Aligned_cols=322 Identities=24% Similarity=0.362 Sum_probs=296.4
Q ss_pred CCCCCchHHHHHHHcCCCCCCccc---------ccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCC
Q 016596 39 KNVSVAEPMLLKAVRGEDVERPPV---------WLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPD 109 (386)
Q Consensus 39 ~~~~~~~ERv~aal~~e~~DRvPv---------~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D 109 (386)
+||+ +||++++++||++||+|| |+++++|++ ++|++.||+++++++++++++|++|
T Consensus 2 ~mt~--~er~~~~~~g~~~dr~Pv~~~~~~~~~~~~~~~G~~-------------~~e~~~~~~~~a~~~~~~~~~~~~D 66 (340)
T TIGR01463 2 EMTP--KERLFAAVTGQTVDDVPPCVPTQTLTTELMRECGAT-------------WPEAHRDGEAMAHLAIAAYEKFGGE 66 (340)
T ss_pred CCCH--HHHHHHHhcCCCCCcCCcccchHHHHHHHHHHhCCc-------------chhhcCCHHHHHHHHHHHHHHhCCC
Confidence 6888 899999999999999998 444555544 6778899999999999999999999
Q ss_pred eeeeccccccccccCCceEEecCCCCCcc-CCC-CCChHHHhccCCCC-CCCChhHHHHHHHHHHHHhCCceeEEeecCc
Q 016596 110 GVILFSDILTPLSGMNIPFDIIKGKGPVI-FDP-INTDAEVDQVREFD-PEESVPYVGKALTILREEVNNEAAVLGFVGA 186 (386)
Q Consensus 110 ~~~~~~d~~~~~e~~G~~~~~~~~~~p~~-~~p-i~~~eD~~~l~~~d-~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~g 186 (386)
++.+++|+.+++|+||+++.|+++.+|.+ .+| +++++|+++++.++ .+++++.++++++++++++++++|++++++|
T Consensus 67 ~~~~~~d~~~~aea~G~~i~~~~~~~P~v~~~~~i~~~~d~~~l~~~~~~~~~~~~~l~ai~~l~~~~~~~~pv~g~v~G 146 (340)
T TIGR01463 67 AVRPPFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGRIPVVLEAIKILRERYGDTHPIIGPMGG 146 (340)
T ss_pred eeecCCCcchHHHhcCCeecCCCCCCCccccCCCCCCHHHhccccccCcCCcchhhHHHHHHHHHHHcCCceeeeCCCCc
Confidence 99999999999999999999998777877 447 69999999998764 4789999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHH
Q 016596 187 PFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLP 264 (386)
Q Consensus 187 Pft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P 264 (386)
|||+++++++ . .+++++++++||.+|++++++++.+++++++++++|+|+|+++|++++ ++||++|+||++|
T Consensus 147 P~Tla~~l~g---~---~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p 220 (340)
T TIGR01463 147 PFTLAQLMIG---V---SEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLP 220 (340)
T ss_pred HHHHHHHHHC---H---HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHH
Confidence 9999999995 3 356689999999999999999999999999999999999999999875 9999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCc-c-CCCHHHH
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGA-L-FGSKDFI 341 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~-l-~gt~eev 341 (386)
|++++++.+++.+ .+.++|+||++. +++.+.++|++++++|+.+|++++++.+|++++|+|||||.. + .||+|+|
T Consensus 221 ~~k~i~~~i~~~g--~~~ilH~CG~~~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g~~~~i~Gnidp~~ll~~gt~eeI 298 (340)
T TIGR01463 221 YQKRLFAYIKEIG--GITVLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTPEKV 298 (340)
T ss_pred HHHHHHHHHHhcC--CceEEEECCCchhhHHHHHHhCCCEEeecCCCCHHHHHHHcCCceEEEecCChHHHhcCCCHHHH
Confidence 9999999999873 467999999997 689999999999999999999999999999999999999964 5 7999999
Q ss_pred HHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 342 TNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 342 ~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
+++++++++. ++|||+|||++|++||+||++||++++|+|+|
T Consensus 299 ~~~v~~~l~~---~~~Il~~gcgi~~~tp~eni~a~v~a~~~~~~ 340 (340)
T TIGR01463 299 KKLAKEVLYN---GGDIVMPGCDIDWMTPLENLKAMIEACKSIKY 340 (340)
T ss_pred HHHHHHHHHc---CCeEECCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 9999999984 48999999999999999999999999999998
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. |
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=504.57 Aligned_cols=329 Identities=27% Similarity=0.382 Sum_probs=302.5
Q ss_pred CCCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccc
Q 016596 39 KNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDIL 118 (386)
Q Consensus 39 ~~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~ 118 (386)
+||+ +||++++++|+++||+|||+++|+|++ +|..++. . +++|++.||+++|+++++++++||+|++.+++|+.
T Consensus 2 ~mt~--~er~~~~~~g~~~dr~Pv~~~~~~g~~--e~~~~~g-~-~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~ 75 (339)
T PRK06252 2 ELTP--KERLLNALKGKEVDRVPVICVTQTGTV--ELMDITG-A-YWPEAHSDPEKMADLAIAGYEVAGFEAVRVPFCMT 75 (339)
T ss_pred CCCH--HHHHHHHHCCCCCCccCccchhhhHHH--HHHHHcC-C-CchhccCCHHHHHHHHHHHHHhcCCCeeccCcchH
Confidence 6888 899999999999999999999998887 5655544 4 49999999999999999999999999999999999
Q ss_pred cccccCCceEEecC-CCCCc-cCCCCCChHHHhccCCCC-CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHH
Q 016596 119 TPLSGMNIPFDIIK-GKGPV-IFDPINTDAEVDQVREFD-PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVV 195 (386)
Q Consensus 119 ~~~e~~G~~~~~~~-~~~p~-~~~pi~~~eD~~~l~~~d-~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~ 195 (386)
+++|+||+++.|.+ +.+|. .++++++.+|+.++..++ .+++++.++++++++++++++++|++++++||||++++++
T Consensus 76 ~~aea~G~~v~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~ 155 (339)
T PRK06252 76 VEAEAMGCEVDMGTKDRQPSVTKYPIKKDVEYRKLPDDLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSLM 155 (339)
T ss_pred HHHHHhCCeecCCCCCCCCcccccccccChhhhhcccchhhCccHhHHHHHHHHHHHHcCCcCceeCccCChHHHHHHHH
Confidence 99999999999974 46785 578899999999997643 3689999999999999999988999999999999999999
Q ss_pred cCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHH
Q 016596 196 EGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTV 273 (386)
Q Consensus 196 ~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i 273 (386)
+ .+ +++++++++||.+|++++++++.+++++++++++|+|+|+++|++++ ++||++|+||++||++++++.+
T Consensus 156 g---~~---~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i 229 (339)
T PRK06252 156 G---PK---NFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEV 229 (339)
T ss_pred H---HH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHh
Confidence 5 33 56799999999999999999999999999999999999999999875 9999999999999999999999
Q ss_pred HhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCc-Ccc-CCCHHHHHHHHHHHHH
Q 016596 274 KQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDP-GAL-FGSKDFITNRINDTVR 350 (386)
Q Consensus 274 ~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~-~~l-~gt~eev~~~v~~~i~ 350 (386)
++. ++++|+||++. .++.+.++|++++++++.+|+.++++.+|++++++||+|| ..| .||+|+|+++|+++++
T Consensus 230 ~~~----~~ilH~cG~~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~ 305 (339)
T PRK06252 230 KGL----PTILHICGDLTSILEEMADCGFDGISIDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLE 305 (339)
T ss_pred ccC----CcEEEECCCchHHHHHHHhcCCCeeccCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHH
Confidence 863 57899999997 6899999999999999999999999999999999999999 455 8999999999999998
Q ss_pred HcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 351 KAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 351 ~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
. +++||++||+++++||+||++||++++|+|||
T Consensus 306 ~---g~~Il~~gcgi~~~tp~enl~a~v~a~~~~~~ 338 (339)
T PRK06252 306 D---GVDILAPGCGIAPKTPLENIKAMVEARKEYYA 338 (339)
T ss_pred c---CCCEEcCCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4 37899999999999999999999999999997
|
|
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-65 Score=490.67 Aligned_cols=318 Identities=25% Similarity=0.356 Sum_probs=292.6
Q ss_pred HHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCceE
Q 016596 49 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPF 128 (386)
Q Consensus 49 ~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~~ 128 (386)
+++++|+++||+|||+++|+|+ ++|..++.. +++|++.|||+++|++++++++||+|++.+++|+.+++++||+++
T Consensus 1 ~~~~~g~~~dr~Pv~~~~~~~~--~e~~~~~g~--~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~~ea~G~~v 76 (326)
T cd03307 1 LAALNGQPVDRVPVICPTQTGT--VELMEATGA--YWPEAHSDAEKMADLAAAGHEVAGFEAVRVPFCMTVEAEALGCEV 76 (326)
T ss_pred CccccCCCCCccCcccchhhHH--HHHHHHhCC--cchhhhcCHHHHHHHHHHHHHHhCCCeeecCCccchHHHhcCCee
Confidence 3689999999999999999887 677666543 399999999999999999999999999999999999999999999
Q ss_pred EecCC-CCCcc-CCCCCChHHHhccCCCC-CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHH
Q 016596 129 DIIKG-KGPVI-FDPINTDAEVDQVREFD-PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 205 (386)
Q Consensus 129 ~~~~~-~~p~~-~~pi~~~eD~~~l~~~d-~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~ 205 (386)
.|.++ .+|.+ .+|+++.+|++++..++ .+++++.++++++++++++++++|++++++||||++++++| .+ +
T Consensus 77 ~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g---~~---~ 150 (326)
T cd03307 77 DWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG---VE---N 150 (326)
T ss_pred ccCCCCCCccccCCCCCCHHHHhhccccccccccHHHHHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHh---HH---H
Confidence 99864 47876 78999999999886533 46899999999999999999899999999999999999995 34 5
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE
Q 016596 206 IKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 206 ~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
++++++++||.+|++|+++++.+++++++++++|+|+|+++|++++ ++||++|+||++||+|++++.+++ .+++
T Consensus 151 ~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~----~~~i 226 (326)
T cd03307 151 FLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG----CPTI 226 (326)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc----CCcE
Confidence 5689999999999999999999999999999999999999999975 789999999999999999999986 3689
Q ss_pred EEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 284 LYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 284 ~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+|+||++. +++.+.++|++++++++.+|+.++++.+|++++++||+||. .| .||+|+|+++|+++++.+ +|||+
T Consensus 227 lh~cG~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~g---~~Il~ 303 (326)
T cd03307 227 LHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLEDG---VDILA 303 (326)
T ss_pred EEECCCChhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHcc---CCEec
Confidence 99999987 68999999999999999999999999999999999999997 55 899999999999999973 59999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHh
Q 016596 361 LGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 361 ~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+||++|++||+||++||++++++
T Consensus 304 ~Gc~i~~~tp~env~a~v~a~~e 326 (326)
T cd03307 304 PGCGIAPRTPLANLKAMVEARKE 326 (326)
T ss_pred CcCCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999986
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. |
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=471.30 Aligned_cols=319 Identities=32% Similarity=0.510 Sum_probs=293.4
Q ss_pred HHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCCceEE
Q 016596 50 KAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFD 129 (386)
Q Consensus 50 aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G~~~~ 129 (386)
++++|+++||||+|+|.+.+. .+|.++ +++|+++|++++++++++++++|++|++++++|+.+++++||+++.
T Consensus 2 ~a~~g~~~drvPv~~~~~~~~--~~~~g~-----~~~e~~~d~e~~~e~~~~~~~~~~~D~~~~~~d~~~~~ealG~~i~ 74 (330)
T cd03465 2 AALNGEKPDRVPVGPLLHGGA--AEFIGI-----SLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIR 74 (330)
T ss_pred chhcCCCCCccceeeeecccc--hhhcCc-----cHHHHhcCHHHHHHHHHHHHHHcCCCeEEeccCccchHHhcCCeEe
Confidence 689999999999999887654 555554 3999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcc-CCCCCChHHHhccCCCC--CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHH
Q 016596 130 IIKGKGPVI-FDPINTDAEVDQVREFD--PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKI 206 (386)
Q Consensus 130 ~~~~~~p~~-~~pi~~~eD~~~l~~~d--~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~ 206 (386)
++++.+|.+ .+++++.+|++++..++ .++|++.++++++++++++++++|+++++.||||++.+++| .+++
T Consensus 75 ~~~~~~p~v~~~~~~~~~d~~~~~~~~~~~~~r~~~~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g------~~~~ 148 (330)
T cd03465 75 YPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKF 148 (330)
T ss_pred ecCCCCCccccccCCCHHHHhhccCCCcCccchHHHHHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHh------HHHH
Confidence 998778877 45689999999765433 37899999999999999999889999999999999999985 3467
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE
Q 016596 207 KRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL 284 (386)
Q Consensus 207 ~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~ 284 (386)
+++++++||.++++++.+++.+++++++++++|+++|+++|++++ ++||++|+||++||+|++++.+++. |.++++
T Consensus 149 ~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~l 226 (330)
T cd03465 149 LMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH 226 (330)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEE
Confidence 899999999999999999999999999999999999999999875 7899999999999999999999987 568999
Q ss_pred EecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHHHHHHHcC-C-CCeEE
Q 016596 285 YASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRINDTVRKAG-R-WKHIL 359 (386)
Q Consensus 285 H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~~~i~~~~-~-~g~Il 359 (386)
|+||++. .++.+.++|+++++++...|+.++++.+|++++++||+||. .| .||+|+|+++|+++|+.++ + +||||
T Consensus 227 H~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il 306 (330)
T cd03465 227 HNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYIL 306 (330)
T ss_pred EECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999996 68999999999999999999999999999999999999997 67 8999999999999999987 3 89999
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++||++|++||+|||+||++|||+
T Consensus 307 ~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 307 SSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999985
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. |
| >cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=459.07 Aligned_cols=326 Identities=18% Similarity=0.155 Sum_probs=283.0
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc--c
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT--P 120 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~--~ 120 (386)
++.||+.++++||++||||+.+. .+.+...|.++ +++|+++|++++++++.+.+++|++|++.+++++.. +
T Consensus 4 er~eR~~~~~~g~~~DRvP~~~~--~~~~~~~~~G~-----~~~e~~~d~~~~a~~~~~~~~~~g~D~~~~~~~l~~~~~ 76 (378)
T cd03308 4 ERVQRLKDAIEGKKPDRVPILSQ--FTEWFIQYAGM-----TLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPPSF 76 (378)
T ss_pred HHHHHHHHHHcCCCCCceeecch--hhHHHHHHcCc-----cHHHHhcCHHHHHHHHHHHHHHcCccccccccccCCchH
Confidence 46899999999999999999653 34455555554 399999999999999999999999999999999888 7
Q ss_pred cccCCceEEecC--CCCCcc-CCCCCChHHHhccCC-CCC---C------------C---ChhHHHHH------------
Q 016596 121 LSGMNIPFDIIK--GKGPVI-FDPINTDAEVDQVRE-FDP---E------------E---SVPYVGKA------------ 166 (386)
Q Consensus 121 ~e~~G~~~~~~~--~~~p~~-~~pi~~~eD~~~l~~-~d~---~------------~---~~~~~~ea------------ 166 (386)
+++||+++.+.+ +..|.+ .+++++.+|++++.. |.. + + +++.++++
T Consensus 77 aealG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~lpr~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~ 156 (378)
T cd03308 77 YQALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIADPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNTNG 156 (378)
T ss_pred HHHhcccceecCCCCccCcchhhccCCHHHHHHHHhCHHHHHHHhHhhhhhhhhcccchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999987542 223433 457899999984432 100 2 3 66677888
Q ss_pred --HHHHH-HHhCCceeEEeecCcHHH-HHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 167 --LTILR-EEVNNEAAVLGFVGAPFT-LASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 167 --~~~l~-~~~g~~~~v~~~~~gPft-~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
+++++ +++|+.+|+.+.+.|||+ +|+.|+| +++++++++++||.+|++|+++++.+++|+++++++|+++
T Consensus 157 ~~~~~l~~~~~g~~vpi~~~~~gPf~~la~~l~g------~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~ 230 (378)
T cd03308 157 PIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLRG------FKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPG 230 (378)
T ss_pred HHHHHHHhhccCCccccceeEeCChHHHHHHHhC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888 888988999999999997 7778884 6688999999999999999999999999999999999995
Q ss_pred ---EEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC-EEEcCCCCCHHHHHH
Q 016596 243 ---VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD-VVSLDWTVDMAEGRR 317 (386)
Q Consensus 243 ---i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d-~l~~d~~~dl~e~~~ 317 (386)
+.++++++++|||++|+||++||+||+++.+++. |.++++|+||++. +++.+.++|.+ ++++++.+|++++++
T Consensus 231 ~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~--g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~ 308 (378)
T cd03308 231 PVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAAR--GQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKE 308 (378)
T ss_pred ceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHH
Confidence 4445568889999999999999999999999986 5689999999998 59999999998 777777799999999
Q ss_pred HhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCCCCc--HHHHHHHHHHHHh
Q 016596 318 RLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWKHILNLGHGIKVGTP--EENVAHFFEVAKA 383 (386)
Q Consensus 318 ~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~~tp--~Eni~a~~~a~~~ 383 (386)
.+|++++|+||+||..| .||+|+|+++|+++|+.++ ++||||++||+++++|| +||++||++++|+
T Consensus 309 ~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~~ 378 (378)
T cd03308 309 KLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVRE 378 (378)
T ss_pred HhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHhC
Confidence 99999999999999866 7999999999999999998 78999999999999998 9999999999985
|
|
| >cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=360.84 Aligned_cols=297 Identities=20% Similarity=0.271 Sum_probs=262.2
Q ss_pred ccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeec-cccccccccCCceEEecCCCCCccC
Q 016596 61 PVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILF-SDILTPLSGMNIPFDIIKGKGPVIF 139 (386)
Q Consensus 61 Pv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~-~d~~~~~e~~G~~~~~~~~~~p~~~ 139 (386)
|||+++|++++.+.|..+ +. ++.+.+.|++.++++....+ +|+|.+..+ +++..+++++|+.+.+.++..|.+.
T Consensus 1 Pv~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~g~D~~~~~~~~~~~~~ealg~~~~~~~~~~p~v~ 75 (306)
T cd00465 1 PVQCEGQTGIMEASETMA--IS-EEPGETSKAEWGITLVEPEE--IPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP 75 (306)
T ss_pred CeEEEccCccccHHHHhh--cC-CchhhhCCchhhceeecccc--CCCCeeeecCcceeehhhhcCceEEecCCCCCCCC
Confidence 889999999988766542 22 48999999999999988877 999999999 9999999999999977666666554
Q ss_pred CCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHH
Q 016596 140 DPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHA 219 (386)
Q Consensus 140 ~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ 219 (386)
.++.+. ...+++.++++++.++++. ++|+++++.||||++.++++. + .++.+++++|+.+++
T Consensus 76 ~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~GP~Tla~~l~~~---~---~~~~~~~~~p~~~~~ 137 (306)
T cd00465 76 EIDEEE----------DPFREAPALEHITAVRSLE--EFPTAGAAGGPFTFTHHSMSM---G---DALMALYERPEAMHE 137 (306)
T ss_pred CcccCC----------ChhhHHHHHHHHHHHHhcc--ccceEeecCCHHHHHHHHHcc---c---HHHHHHHHChHHHHH
Confidence 333221 1357889999999998885 689999999999999999962 2 456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHH
Q 016596 220 LLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLE 294 (386)
Q Consensus 220 ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~ 294 (386)
+++.+++.+++++++++++|+++|++.|++++ ++||++|++|++|++|++++.++.. +.++++|+||++. .++
T Consensus 138 ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~--~~~~~lH~cg~~~~~~~ 215 (306)
T cd00465 138 LIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAG--EVPIVHHSCYDAADLLE 215 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhc--CCceEEEECCCHHHHHH
Confidence 99999999999999999999999999999875 4799999999999999999999875 5688999999976 689
Q ss_pred HHHhcCCCEEEcCCCC-CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcH--
Q 016596 295 RLALTGVDVVSLDWTV-DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPE-- 371 (386)
Q Consensus 295 ~l~e~g~d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~-- 371 (386)
.+.++|++++++|... |+.++++.+|++++|+|||+|..+.||+|+|+++++++++.+++ ||||++||++++++|+
T Consensus 216 ~l~~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~~ 294 (306)
T cd00465 216 EMIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYKP 294 (306)
T ss_pred HHHHhCcceEecccccCCHHHHHHHhCCCEEEECCCCccccCCCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCcH
Confidence 9999999999999887 99999999999999999999995589999999999999999866 8999999999999999
Q ss_pred HHHHHHHHHHHh
Q 016596 372 ENVAHFFEVAKA 383 (386)
Q Consensus 372 Eni~a~~~a~~~ 383 (386)
||++||++++++
T Consensus 295 enl~a~v~a~~~ 306 (306)
T cd00465 295 EHLRAVVQLVDE 306 (306)
T ss_pred HHHHHHHHHhhC
Confidence 999999999985
|
Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc. |
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=301.58 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=180.2
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEecCCcC----C
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADN-GAQAVQIFDSWAT----E 252 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~-G~d~i~i~d~~~~----~ 252 (386)
++......||||+++.|+| +++++++++++||.+|++|+++++.+++|+++++++ |+|+|+++|+|++ +
T Consensus 113 ~~~~~~~~Gpf~~a~~l~g------~e~~~~~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~ 186 (321)
T cd03309 113 VIDVPLPGGVFERFRLRMS------MEDALMALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSF 186 (321)
T ss_pred eeccCCCCCHHHHHHHHHH------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCc
Confidence 3344566799999999985 667889999999999999999999999999999998 9999999999875 6
Q ss_pred CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCC-CHHHHHHHhCCCeeEEecCC
Q 016596 253 LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTV-DMAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 253 iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd 330 (386)
|||++|+||++||+||+++.+++.+ +.++++|+||++. +++.+.++|++++++++.. |+.++++.+|++++|+||+|
T Consensus 187 LSpe~f~efv~P~~krIi~~ik~~~-g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlD 265 (321)
T cd03309 187 ISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAID 265 (321)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcc-CCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCC
Confidence 9999999999999999999999874 5789999999986 7899999999999999986 99999999999999999999
Q ss_pred cCcc-C-CCHHHHHHHHHHHHHHcC-CCCeEEecCCCCCCCCcHHHHHHHHHH
Q 016596 331 PGAL-F-GSKDFITNRINDTVRKAG-RWKHILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 331 ~~~l-~-gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
|..| . +|+|+|+++|+++++.++ +++||++++|++|.++++||++|+-+.
T Consensus 266 p~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T cd03309 266 DVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSIFPEVLRRVSAF 318 (321)
T ss_pred hHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCcccCHHHHHHHHHh
Confidence 9876 4 569999999999999998 699999999999999999999998664
|
Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism. |
| >PRK04326 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-24 Score=205.35 Aligned_cols=260 Identities=14% Similarity=0.155 Sum_probs=192.9
Q ss_pred HHHhhcCHHHHHHHhhhhHHHhCCCee----------eeccccccccccCCceEEecCCC---CCccCCCCCChHHHhcc
Q 016596 85 FRERSENVDLVVEISLQPWHVFKPDGV----------ILFSDILTPLSGMNIPFDIIKGK---GPVIFDPINTDAEVDQV 151 (386)
Q Consensus 85 ~~e~~~d~e~~aea~~~~~~~f~~D~~----------~~~~d~~~~~e~~G~~~~~~~~~---~p~~~~pi~~~eD~~~l 151 (386)
+.+...++ ++..+..++++|+|.+ ...+.......++|+.+++.+.. .|.+..++
T Consensus 40 l~~~~~~a---~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~~~~~~~~~~~~~~~~~P~v~g~~--------- 107 (330)
T PRK04326 40 LHEAFDDA---VRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGFKFYGPVRVWGNNYFRKPSVVGKI--------- 107 (330)
T ss_pred HHHHHHHH---HHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCceeccCceeccccccccCCeEEEec---------
Confidence 44444444 6677788899999988 33444445566677766643211 12221111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 016596 152 REFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKY 231 (386)
Q Consensus 152 ~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~ 231 (386)
...+ +..+++++.+++..++ .++.+.+.||+|++..+.. .+ ..+++|.++ .+.+.+.++
T Consensus 108 ~~~~-----~~~l~~~~~~~~~~~~-~~vk~~l~GP~Tla~~~~~-----~~------y~~~~e~~~----~l~~~~~~~ 166 (330)
T PRK04326 108 EYKE-----PMLVDEFEFAKSVTYT-RPVKVPITGPYTIAEWSFN-----EY------YKDKEELVF----DLAKVINEE 166 (330)
T ss_pred cCCC-----CCcHHHHHHHHhcccC-CCceEeccCHHHHHhhccc-----cc------CCCHHHHHH----HHHHHHHHH
Confidence 1111 3446667777776544 7899999999999976642 11 113344444 455788888
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT 309 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~ 309 (386)
++++.++|++.|++.||..+. +|+.+ +++.++++++++.++ ..+.+|+| |+.. .++.+.++|+|++++|..
T Consensus 167 i~~l~~~G~~~iqidEP~l~~-~~~~~-~~~~~~l~~~~~~~~-----~~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 167 IKNLVEAGAKYIQIDEPALAT-HPEDV-EIAVEALNRIVKGIN-----AKLGLHVCYGDYSRIAPYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHHHCCCCEEEecCchhhc-CHHHH-HHHHHHHHHHHhCCC-----CEEEEEEeCCCcHHHHHHHHhCCCCEEEEEeC
Confidence 899999999999998886543 67777 888899999999772 36799999 8877 589999999999999876
Q ss_pred C----CHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC---CcHHHHHHHHHHH
Q 016596 310 V----DMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVG---TPEENVAHFFEVA 381 (386)
Q Consensus 310 ~----dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~---tp~Eni~a~~~a~ 381 (386)
. +++.+++..+++..++|+||+... .+|+|+|++.++++++.....+++++|+|+++.- ++.+|+++|++++
T Consensus 240 ~~~~~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a 319 (330)
T PRK04326 240 NGNYKLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCGLKLLPREIAYQKLVNMVKAT 319 (330)
T ss_pred CCCchhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 5 788887766677899999999766 8999999999999999655568999999998765 9999999999999
Q ss_pred Hhh
Q 016596 382 KAI 384 (386)
Q Consensus 382 ~~y 384 (386)
++.
T Consensus 320 ~~~ 322 (330)
T PRK04326 320 REV 322 (330)
T ss_pred HHH
Confidence 875
|
|
| >PRK00957 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=170.47 Aligned_cols=189 Identities=16% Similarity=0.215 Sum_probs=150.1
Q ss_pred CCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc--CC
Q 016596 175 NNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA--TE 252 (386)
Q Consensus 175 g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~--~~ 252 (386)
+++.++.+.+.||+|++..+.+ +.+ ..++ .+++. +..+++...+.++++.++|++.|++.||.. ++
T Consensus 105 ~~~~~vK~~i~GP~Tla~~~~~----~~~---y~~~-~~~~~----~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~ 172 (305)
T PRK00957 105 DPNKGVKGIITGPSTLAYSLRV----EPF---YSDN-KDEEL----IYDLARALRKEAEALEKAGVAMIQIDEPILSTGA 172 (305)
T ss_pred CCCCceeEEecCHHHHHhhccc----ccc---cCCc-cHHHH----HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCC
Confidence 3567899999999999987653 111 1221 22444 555578888888889999999999988753 34
Q ss_pred CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCC---CCCHHHHHHH-hCCCeeEEe
Q 016596 253 LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDW---TVDMAEGRRR-LGPDVAVQG 327 (386)
Q Consensus 253 iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~---~~dl~e~~~~-~g~~~~l~G 327 (386)
.+ .+++.++++++.+.++ ..+.+|+||+.. .++.+.++++|++++|. ..++..+++. .+++..++|
T Consensus 173 ~~----~~~~~~~~~~~~~~i~-----~~v~lH~CG~~~~i~~~l~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~G 243 (305)
T PRK00957 173 YD----LEVAKKAIDIITKGLN-----VPVAMHVCGDVSNIIDDLLKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFG 243 (305)
T ss_pred ch----HHHHHHHHHHHHHhhC-----CceEEEECCCcHHHHHHHHhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEE
Confidence 44 3477788899888773 357899999998 58999999999999986 3578888753 457789999
Q ss_pred cCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHHHHhh
Q 016596 328 NVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEVAKAI 384 (386)
Q Consensus 328 ~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a~~~y 384 (386)
+||+... .+|+|+|++.++++++..+..+++++|+|++..-+ +.+|+++|++++++|
T Consensus 244 vId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 244 CVDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREI 304 (305)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 9999776 89999999999999998865689999999996544 999999999999986
|
|
| >cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=151.02 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=154.2
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCCCHH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATELSPV 256 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~ 256 (386)
.++.+.+.||+|++..+.+. + . ..+ ...+++++.+++.+.+.++++.++|++.|++-||. +..++++
T Consensus 119 ~~lk~~l~GP~Tla~~~~~~-----~-~---~~y---~~~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~ 186 (332)
T cd03311 119 KPLKGILTGPVTIPSPSFVR-----F-R---GYY---PSREELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE 186 (332)
T ss_pred ccccccCCCCeeECCchhhc-----c-c---ccC---CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc
Confidence 56778899999998877631 1 0 023 23467999999999999999999999999998874 4577777
Q ss_pred HHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc----------c-hHHHHHhcCCCEEEcCCCC----CHHHHHHHhC
Q 016596 257 DFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG----------G-LLERLALTGVDVVSLDWTV----DMAEGRRRLG 320 (386)
Q Consensus 257 ~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~----------~-~l~~l~e~g~d~l~~d~~~----dl~e~~~~~g 320 (386)
++++..++.+++++.+.+...+..+.+|+| |+. . .++.+.+.++|+++++... +++.+++...
T Consensus 187 -~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~ 265 (332)
T cd03311 187 -PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKELPY 265 (332)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCC
Confidence 899999999999999986333567899999 776 4 5799999999999987643 7888877655
Q ss_pred CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHH
Q 016596 321 PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAK 382 (386)
Q Consensus 321 ~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~ 382 (386)
++..++|.||+... .+|+|+|++.++++++..+...++++|+|+++. +.-...+++|.++++
T Consensus 266 ~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 266 DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 77899999999876 899999999999999988655799999999864 444666677776654
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from |
| >cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=128.82 Aligned_cols=200 Identities=17% Similarity=0.080 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
...++++.+++..+...++.+.+.||+|++..+.+. . . .|+..+++++.+++...++++++.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~---~-~---------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~ 166 (321)
T cd03310 100 LELDYLEEVAEAYKEALKVKVVVTGPLTLALLAFLP---N-G---------EPDAYEDLAKSLAEFLREQVKELKNRGIV 166 (321)
T ss_pred ccHHHHHHHHHhcCCCCceEEEecCHHhHhHhhccc---c-C---------CchHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 445677777777766678999999999999888752 1 1 16788999999999999999999999999
Q ss_pred EEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCCCC-------H
Q 016596 242 AVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVD-------M 312 (386)
Q Consensus 242 ~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~d-------l 312 (386)
.|++.||..+ ..| .++..++.+++++.+++.. +..+.+|+||+ ..++.+.++|+|++++|.... +
T Consensus 167 ~iqidEP~l~~~~~s----~~~~~~~~~~~~~~~~~~~-~~~~~lHic~~-~~~~~l~~~~vd~l~~D~~~~~~~~~~~l 240 (321)
T cd03310 167 VVQIDEPSLGAVGAG----AFEDLEIVDAALEEVSLKS-GGDVEVHLCAP-LDYEALLELGVDVIGFDAAALPSKYLEDL 240 (321)
T ss_pred EEEeCCCcccccccc----ccchHHHHHHHHHHHhhcc-CCceEEEECCC-CCHHHHHhCCCCEEEEecccCcccchhHH
Confidence 9999888643 555 6678899999999987621 23578999999 557899999999999987543 3
Q ss_pred HHHHHHh-CCCeeEEecCCcCc-cCCC---HHHHHHHHHHHHHHcC---CCCeEEecCCCCC---CCCcHHHHHHHHHHH
Q 016596 313 AEGRRRL-GPDVAVQGNVDPGA-LFGS---KDFITNRINDTVRKAG---RWKHILNLGHGIK---VGTPEENVAHFFEVA 381 (386)
Q Consensus 313 ~e~~~~~-g~~~~l~G~vd~~~-l~gt---~eev~~~v~~~i~~~~---~~g~Ils~gc~i~---~~tp~Eni~a~~~a~ 381 (386)
..+.+.- +++..-.|-+|... ...+ +|++ ++..+.++..+ +...+++|+|++. .+.-...++.|.+++
T Consensus 241 ~~~~~~g~~~~~lg~gvid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~vtpscgL~~~p~~~a~~kl~~l~~~a 319 (321)
T cd03310 241 KKLLRIGVRTLILGLVVTDNEAKGRNAWKEIERL-EKLVRRLEEPGEVLDEILYLTPDCGLAFLPPQEARRKLALLAEAA 319 (321)
T ss_pred HHHHhcCCceEEEEeeecCCcccCCCHHHHHHHH-HHHHHHhccchhhhhhceeeCCCccCCCCCHHHHHHHHHHHHHHh
Confidence 3443322 33333455556521 1111 2233 33444444332 2569999999974 333444444444444
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o |
| >PRK01207 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=111.77 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=139.4
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCC-EEEEecCCc
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADN------GAQ-AVQIFDSWA 250 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~------G~d-~i~i~d~~~ 250 (386)
.|+-+.+.||+|++.+... + .|.+.+ +++..+.+.+.+-++.+.++ |+. .|++-+|.-
T Consensus 119 kpvK~~ltGP~Ti~~~S~~----~--------~Y~~~~---el~~~iA~al~~Ev~~L~~a~~~~~~G~~~~IQiDEPal 183 (343)
T PRK01207 119 KPIKVPITGPYTMMDWSFN----D--------FYRDRY---DLAMEFARIINEELKDIKSAWDRKSPGRKLEIQIDEPAT 183 (343)
T ss_pred CCcEEEecCHHHHHHHhcc----c--------ccCCHH---HHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEeCCCc
Confidence 7899999999999877652 1 244543 56667777888888889888 887 699987763
Q ss_pred CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-C-Ccc-hHHHHHhcCCCEEEcCCCC-----------------
Q 016596 251 TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-G-SGG-LLERLALTGVDVVSLDWTV----------------- 310 (386)
Q Consensus 251 ~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G-~~~-~l~~l~e~g~d~l~~d~~~----------------- 310 (386)
. ....+.++....++..++.+. ..+.+|+| | +.. +++.+.++++|+++++...
T Consensus 184 ~--~~~~~l~~av~a~n~~~~gv~-----~~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~~~~~~~~~r~~~~ 256 (343)
T PRK01207 184 T--THPDEMDIVVDSINKSVYGID-----NEFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTLEPGTSDEKRPGFQ 256 (343)
T ss_pred C--CChHHHHHHHHHHHHHHhCCC-----CcEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCcccccccccccccchh
Confidence 2 234566777777777777774 25789999 7 455 5899999999999987541
Q ss_pred CHHHHHHH---h-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcC-CCCeEEecCCCC---CCCCcHHHHHHHHHHH
Q 016596 311 DMAEGRRR---L-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAG-RWKHILNLGHGI---KVGTPEENVAHFFEVA 381 (386)
Q Consensus 311 dl~e~~~~---~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~-~~g~Ils~gc~i---~~~tp~Eni~a~~~a~ 381 (386)
+++.+++. + .++..-.|-+|...- --|+|+|++.+++.++..+ ....+++|+|++ +...-.+.+++|++++
T Consensus 257 ~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~~a~~KL~~mv~aa 336 (343)
T PRK01207 257 DLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSREIGEQKLRNMVAAK 336 (343)
T ss_pred HHHHHHhhccccCCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 23333332 1 133456788888764 7999999999999999984 679999999997 5566788999999999
Q ss_pred Hhh
Q 016596 382 KAI 384 (386)
Q Consensus 382 ~~y 384 (386)
+++
T Consensus 337 ~~~ 339 (343)
T PRK01207 337 NNI 339 (343)
T ss_pred HHH
Confidence 875
|
|
| >PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.9e-10 Score=107.23 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=140.0
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-C-CCCH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-T-ELSP 255 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~-~iSp 255 (386)
.++-+.+.||+|++....+ + .|.+ ..+++..+.+.+.+.++++.+ |++.|++-+|.- . -++
T Consensus 128 ~~~K~vl~GP~T~~~~s~~----~--------~Y~~---~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~- 190 (326)
T PRK08575 128 SKLKAVLPGPLTYAVLSDN----E--------YYKN---LIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK- 190 (326)
T ss_pred CCccEEEecHHHHHHHhcc----c--------cCCC---HHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCC-
Confidence 3567788999998754331 1 1333 357788888888888888888 999999988764 3 333
Q ss_pred HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc--chHHHHHhcCCCEEEcCCC---CCHHHHHHHhCCCeeEEecC
Q 016596 256 VDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG--GLLERLALTGVDVVSLDWT---VDMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 256 ~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~--~~l~~l~e~g~d~l~~d~~---~dl~e~~~~~g~~~~l~G~v 329 (386)
+...+.+...++++.+.+ +.++.+|+| |.. ..++.+.++++|++++|.. .++..+.+.+.++....|-|
T Consensus 191 ~~~~~~~~~a~~~~~~~~-----~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~~~l~~~~~~~~~k~l~~Gvi 265 (326)
T PRK08575 191 RDTLEKLPEVYKTMAKNV-----NIEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENLKKLGRVYTYLKGRKVYLGIL 265 (326)
T ss_pred HHHHHHHHHHHHHHHhcC-----CCCEEEECCCCCccccHHHHHhcCCCcEEEEEecCChhHHHHHHhhCCCCEEEEEEE
Confidence 345666667777777766 246789999 742 3589999999999999863 25677766666677778999
Q ss_pred CcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHHHHHHHHHHHHhh
Q 016596 330 DPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 330 d~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~Eni~a~~~a~~~y 384 (386)
|-..- ..|+|+|++.+++.++ .+....+++|+|++ |..+-.+.+++|.++ ++.
T Consensus 266 D~rn~~vE~~eev~~~i~~~~~-~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~ 322 (326)
T PRK08575 266 NARNTKMEKISTIRRIVNKVKR-KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL-EKL 322 (326)
T ss_pred eCCCCCCCCHHHHHHHHHHHHh-cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH-Hhh
Confidence 98765 8999999999999999 66779999999996 567778999999988 543
|
|
| >PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-10 Score=106.61 Aligned_cols=197 Identities=10% Similarity=0.160 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++.++.+++.. +.++-+++.||.|++..+.. ..|.+. .+++..+.+.+.+.++++.++|++.|
T Consensus 111 ~~~~~~~~~~~--~~~vK~~ipgP~tl~~~~~~------------~~Y~~~---~el~~dlA~al~~Ei~~L~~aG~~~I 173 (339)
T PRK09121 111 VEDAKFLRQQT--TQPIKWALPGPMTMIDTLYD------------DHYKSR---EKLAWEFAKILNQEAKELEAAGVDII 173 (339)
T ss_pred HHHHHHHHhcc--CCCceEEeCcHHHHHHHhcc------------ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 34455555542 24678899999998865542 125554 46677788888889999999999999
Q ss_pred EEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc------------------c-hHHHHHhcCCC
Q 016596 244 QIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG------------------G-LLERLALTGVD 302 (386)
Q Consensus 244 ~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~------------------~-~l~~l~e~g~d 302 (386)
++-|+.-+ +.+ ...++....+.+.++.+ ...+.+|+| |+. . +++.+.++++|
T Consensus 174 QiDeP~l~~~~~--~~~~~~v~~~n~~~~g~-----~~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd 246 (339)
T PRK09121 174 QFDEPAFNVFFD--EVNDWGVAALERAIEGL-----KCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNID 246 (339)
T ss_pred EecccHHhhhhH--HHHHHHHHHHHHHHcCC-----CCceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCC
Confidence 99886533 332 22333333334444333 246789999 753 1 36888899999
Q ss_pred EEEcCCC--CCHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC---CCCcHHHHHH
Q 016596 303 VVSLDWT--VDMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK---VGTPEENVAH 376 (386)
Q Consensus 303 ~l~~d~~--~dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~---~~tp~Eni~a 376 (386)
.+.++.. -...+..+.+.++....|-||...- ..++|+|++.+++.++..+....+++|+||+. .+.-.+.+++
T Consensus 247 ~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~ 326 (339)
T PRK09121 247 IISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNA 326 (339)
T ss_pred EEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHH
Confidence 9988642 1122334444566677899999875 79999999999999998876699999999975 4455788999
Q ss_pred HHHHHHhh
Q 016596 377 FFEVAKAI 384 (386)
Q Consensus 377 ~~~a~~~y 384 (386)
|.++++.+
T Consensus 327 l~~~a~~~ 334 (339)
T PRK09121 327 LSAGAEIV 334 (339)
T ss_pred HHHHHHHH
Confidence 99888754
|
|
| >PRK06233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=106.23 Aligned_cols=210 Identities=16% Similarity=0.097 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++..+.+++..++..++..++.||.+++.... .+. ....|.+. .+++..+.+.+.+.++++.++|++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~----~~~----~~~~Y~~~---eel~~dlA~a~~~Ei~~L~~aG~~~I 188 (372)
T PRK06233 120 FAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNR----SDN----WPKFYDSW---DDYLDDLAQAYHDTIQHFYDLGARYI 188 (372)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcHHhccCcc----ccc----ccccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 45566666654445567889999998762111 110 01245554 46788888889999999999999999
Q ss_pred EEecCC-cCCCC--------H---HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-----------hHHHHHhc
Q 016596 244 QIFDSW-ATELS--------P---VDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-----------LLERLALT 299 (386)
Q Consensus 244 ~i~d~~-~~~iS--------p---~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-----------~l~~l~e~ 299 (386)
++-|+. +.+.+ | +.+.++...+.+-+-..++..-.+..+.+|+| ||.. +++.|.++
T Consensus 189 QiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~ 268 (372)
T PRK06233 189 QLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQL 268 (372)
T ss_pred EEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhC
Confidence 998865 32221 1 12334444433333333332211346788999 8773 36888999
Q ss_pred CCCEEEcCCC----CCHHHHHHHhC---CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-----
Q 016596 300 GVDVVSLDWT----VDMAEGRRRLG---PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK----- 366 (386)
Q Consensus 300 g~d~l~~d~~----~dl~e~~~~~g---~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~----- 366 (386)
++|.+.++.. .+++-+++... ++.+..|-||...- .-++|+|++.+++.++..+....+++|.|++.
T Consensus 269 ~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g 348 (372)
T PRK06233 269 NYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEG 348 (372)
T ss_pred CCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCcccccc
Confidence 9999988643 24544454432 46688899998765 79999999999999998875689999999975
Q ss_pred ----CCCcHHHHHHHHHHHHhh
Q 016596 367 ----VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 367 ----~~tp~Eni~a~~~a~~~y 384 (386)
.+.-.+.++.|.+.+++.
T Consensus 349 ~~l~~~~~~~KL~~l~~~a~~~ 370 (372)
T PRK06233 349 NILTEADQWAKLALVKKIADKV 370 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 234567788888888763
|
|
| >PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-08 Score=95.88 Aligned_cols=204 Identities=11% Similarity=0.099 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
+-+..+..+++.|...+|-+.++||+|++.+..++ + .| .+ ..+.+...+..++.+-++.+..+|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~--~-~Y--------~d--~~~~la~~ia~~l~~e~~~l~~~gv~~ 162 (344)
T PRK06052 96 IEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGG--T-IY--------TD--ILLILAKSVERFVENAIKSAKNFKIKT 162 (344)
T ss_pred HHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCC--c-cc--------cc--hHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 33455667788888888999999999999998852 1 22 22 125666777778888888899999999
Q ss_pred EEEecCCcCCCCHH-HHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchH-HHHHhcC-CCEEEcCCC---CCHHHHH
Q 016596 243 VQIFDSWATELSPV-DFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL-ERLALTG-VDVVSLDWT---VDMAEGR 316 (386)
Q Consensus 243 i~i~d~~~~~iSp~-~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l-~~l~e~g-~d~l~~d~~---~dl~e~~ 316 (386)
|+|-+|.-+.-.+- ...+.+...+..+...+...|-++++.+|+ .++ +.+.+++ +|++++... .++.-+.
T Consensus 163 IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~----~l~~~~i~~~~~idvi~~E~A~~~~~L~~l~ 238 (344)
T PRK06052 163 ISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS----PLYYELICETPGINVIGVESAATPSYLDLID 238 (344)
T ss_pred EEecCcccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh----HhhHHHHhcCCCCCEEeeeccCChHHHHHHh
Confidence 99988764422211 122334444444433332222244555666 455 8999998 999998754 2444444
Q ss_pred HH----hCCCeeEEecCCc--C------------------------cc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 317 RR----LGPDVAVQGNVDP--G------------------------AL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 317 ~~----~g~~~~l~G~vd~--~------------------------~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
+. + ++..=.|-+|. . .- --|+|+|.+.+++.++..+...+.++|+||+
T Consensus 239 ~~~~e~~-dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGL 317 (344)
T PRK06052 239 KKVLEDT-DTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGL 317 (344)
T ss_pred hhhhhhc-CCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCC
Confidence 43 3 34455677777 3 11 4899999999999999998789999999998
Q ss_pred C----CCCcHHHHHHHHHHHHhh
Q 016596 366 K----VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 366 ~----~~tp~Eni~a~~~a~~~y 384 (386)
- .....+.+++|+++++.+
T Consensus 318 K~~~e~~~A~~KL~nmv~aa~~~ 340 (344)
T PRK06052 318 GSWPSQELAFRLLENVAKAINEF 340 (344)
T ss_pred CCChhhHHHHHHHHHHHHHHHHH
Confidence 4 234577889999998875
|
|
| >PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-09 Score=101.53 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++-++.+++.. +..++..++.||.+++....+ .. . ....|.+. .++++.+.+.+.+.++++.++|++.|
T Consensus 119 ~~~~~~l~~~~-~~~~~K~~ipgP~~l~~~~~~---~~-~---~~~~Y~~~---~~~~~dlA~al~~Ei~~L~~aG~~~I 187 (368)
T PRK06520 119 LEDFRFLKSIS-GDATPKMTIPSPSVLHFRGGR---KA-I---DATVYPDL---DDYFDDLAKTWRDAIKAFYDAGCRYL 187 (368)
T ss_pred HHHHHHHHhhc-cCCCCCEEcCcHHHHHhhccc---cc-c---chhcCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 34455555543 334667889999998743111 00 0 01245554 47788888888999999999999999
Q ss_pred EEecCC-cCCCCHHHHHHh---------hHHHHHHHHHHHHh-hCCCCcEEEEec-CCcc-----------hHHHH-Hhc
Q 016596 244 QIFDSW-ATELSPVDFEEF---------SLPYLKQIVDTVKQ-THPDLSLILYAS-GSGG-----------LLERL-ALT 299 (386)
Q Consensus 244 ~i~d~~-~~~iSp~~f~ef---------~~P~~k~l~~~i~~-~~~~~~~~~H~c-G~~~-----------~l~~l-~e~ 299 (386)
++-|+. +.++++++...+ ....+.++++.+-+ .-.+..+.+|+| ||.. .++.| .++
T Consensus 188 QiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~ 267 (368)
T PRK06520 188 QLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGV 267 (368)
T ss_pred EecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhc
Confidence 998864 456664422111 01111133332222 101334678999 8862 36775 589
Q ss_pred CCCEEEcCCCC----CHHHHHHHh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-------
Q 016596 300 GVDVVSLDWTV----DMAEGRRRL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK------- 366 (386)
Q Consensus 300 g~d~l~~d~~~----dl~e~~~~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~------- 366 (386)
++|.+.++... +++.++-.- +++.+..|-||...- .-++|+|++.+++.++..+....+++|+|++.
T Consensus 268 ~vd~~~lE~~~~r~g~~e~L~~l~~~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~ 347 (368)
T PRK06520 268 NVDAFFLEYDNERAGGFEPLRFIPPGHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNS 347 (368)
T ss_pred CCCeEEEEeccCCCCCcchHHHhhhcCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCC
Confidence 99999875431 123222211 245677899998875 79999999999999998875689999999975
Q ss_pred --CCCcHHHHHHHHHHHHh
Q 016596 367 --VGTPEENVAHFFEVAKA 383 (386)
Q Consensus 367 --~~tp~Eni~a~~~a~~~ 383 (386)
.+.-.+.|+.|.+++++
T Consensus 348 l~~~~~~~KL~~l~~~a~~ 366 (368)
T PRK06520 348 LSEEQQWAKLRLVVEIANE 366 (368)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 23456678888888876
|
|
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-09 Score=108.74 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=138.9
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CC----
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TE---- 252 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~---- 252 (386)
.|+-+++.||.|++.+..- +. +.+ ..+++..+...+.+.++.+.++|++.|+|-++.- ..
T Consensus 553 ~~vK~~ltGP~Ti~~~s~~----r~--------~~~---~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~ 617 (766)
T PLN02475 553 RPMKGMLTGPVTILNWSFV----RN--------DQP---RHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 617 (766)
T ss_pred CccceEEecHHHHHhhhhc----cc--------CCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcC
Confidence 4888999999998755442 11 111 3577888888889999999999999999988642 11
Q ss_pred -CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-C---HHHHHHHhC-CCee
Q 016596 253 -LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-D---MAEGRRRLG-PDVA 324 (386)
Q Consensus 253 -iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-d---l~e~~~~~g-~~~~ 324 (386)
...+.|.+++...++...+.++. +..+.+|+| |+.. +++.+.++.+|+++++..- + ++.+++.++ ++.+
T Consensus 618 ~~~~~~~l~~av~af~~~~~~v~~---~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~I 694 (766)
T PLN02475 618 KSEHAFYLDWAVHSFRITNCGVQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 694 (766)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCC---CCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeE
Confidence 22345556555555555555542 345788999 8877 6899999999999997642 2 455545333 3457
Q ss_pred EEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHHhh
Q 016596 325 VQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAKAI 384 (386)
Q Consensus 325 l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~~y 384 (386)
..|-+|...- .-|+|+|++.+++.++..+...++++|+||+-. ..-.+.+++|+++++..
T Consensus 695 glGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~ 758 (766)
T PLN02475 695 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLL 758 (766)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 7788898765 799999999999999999877999999999854 33466788899988864
|
|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=108.51 Aligned_cols=188 Identities=14% Similarity=0.175 Sum_probs=138.2
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCC----
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATE---- 252 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~---- 252 (386)
.|+-+++.||.|++..... +.+ . ...+++..+...+.+.++.+.++|++.|++-+|. ..-
T Consensus 548 ~~vK~~ltGP~T~~~~s~~----r~~--------~---~~~e~~~dlA~al~~Ev~~L~~aG~~~IQiDEPal~e~~~~~ 612 (758)
T PRK05222 548 KPVKGMLTGPVTILNWSFV----RDD--------Q---PREETARQIALAIRDEVLDLEAAGIKIIQIDEPALREGLPLR 612 (758)
T ss_pred CCCcEEEecHHHHHHHHhc----ccC--------C---CHHHHHHHHHHHHHHHHHHHHHcCCCEEEeeCchhhhcCccc
Confidence 4688999999998754432 111 1 1356778888888899999999999999998864 221
Q ss_pred -CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC-CC---HHHHHHHhC-CCee
Q 016596 253 -LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT-VD---MAEGRRRLG-PDVA 324 (386)
Q Consensus 253 -iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~-~d---l~e~~~~~g-~~~~ 324 (386)
-+.+.|.+++...++..++.+.. +..+.+|+| |+.. +++.+.++++|+++++.. .+ +..+.+ .+ ++..
T Consensus 613 ~~~~~~~l~~~v~a~n~a~~~~~~---~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L~~~~~-~~~~~~i 688 (758)
T PRK05222 613 RSDWDAYLDWAVEAFRLATSGVKD---ETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELLDAFED-FGYPNEI 688 (758)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCC---CCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhHHHhhc-cCCCCeE
Confidence 23455667776666666665543 346789999 8876 689999999999999754 22 223222 22 3457
Q ss_pred EEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHHhh
Q 016596 325 VQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAKAI 384 (386)
Q Consensus 325 l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~~y 384 (386)
..|-+|...- .-|+|+|++.+++.++..+...++++|+||+-. +.-...++.|++++++.
T Consensus 689 glGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~ 752 (758)
T PRK05222 689 GPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKEL 752 (758)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 7888898775 799999999999999998767899999999854 34466778888888864
|
|
| >cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-08 Score=97.29 Aligned_cols=188 Identities=18% Similarity=0.111 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++..+.+++. + .++-..+.||+|++..... +. -|.++ .++++.+.....+.++.+.++|++
T Consensus 135 ~~l~~~~~a~~~-~--~~~K~~i~GP~T~~~ls~~----~~-------~Y~~~---~el~~dla~~y~~el~~L~~aG~~ 197 (360)
T cd03312 135 KLLDEYLEAKAL-G--INTKPVLLGPVTFLKLSKA----KG-------GGFDR---LSLLDKLLPVYKELLKKLAAAGAE 197 (360)
T ss_pred hHHHHHHHHHhc-C--CCCcEEEECHHHHHHHhcc----cc-------cCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344455555443 3 4567788999998733321 10 02333 477888888888999999999999
Q ss_pred EEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHH
Q 016596 242 AVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEG 315 (386)
Q Consensus 242 ~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~ 315 (386)
.|++-||. ...++.+ +.+.+. +.++.+.+..++..+.+|+| |+.. .++.+.++++|++++|.. .+++.+
T Consensus 198 ~IQiDEP~l~~~~~~~-~~~~~~----~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~~~~l~~l 272 (360)
T cd03312 198 WVQIDEPALVLDLPEE-WLAAFK----RAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDGLHLDLVRGPENLEAV 272 (360)
T ss_pred EEEeeCChhhcCCCHH-HHHHHH----HHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCEEEEEecCCcccHHHH
Confidence 99998875 4456543 334333 34444433211356889999 7765 578899999999988753 367777
Q ss_pred HHHh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHH
Q 016596 316 RRRL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEE 372 (386)
Q Consensus 316 ~~~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~E 372 (386)
++.+ .++....|-||...- ..++|++.+.++++.+.. .....++|+|++ |.++..|
T Consensus 273 ~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~CgL~~lP~~~~~e 333 (360)
T cd03312 273 LKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDRLVVSPSCSLLHVPVDLENE 333 (360)
T ss_pred HhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCCCcCCCcccccc
Confidence 6644 367788899999876 899999999999999977 668999999996 5444333
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro |
| >PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=101.98 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=124.3
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPV 256 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~ 256 (386)
.++.+.+.||+|++..... + ......+++..+.+.+.+.++++.++|+..|++-+|.- +.++..
T Consensus 121 ~~vK~~i~gP~tl~~~~~~----~-----------~y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~ 185 (324)
T PF01717_consen 121 KPVKGTITGPSTLADPSAN----R-----------YYKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDA 185 (324)
T ss_dssp SSBEEEEE-HHHHHHTSEE----S-----------SSS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSS
T ss_pred cccccccCHHHHhhchhcc----c-----------cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhh
Confidence 3477788999998765542 1 11223466777777888888899999999999988752 222221
Q ss_pred H--HHH-hhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCC----CCHHHHHHHhCCCeeEEe
Q 016596 257 D--FEE-FSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWT----VDMAEGRRRLGPDVAVQG 327 (386)
Q Consensus 257 ~--f~e-f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~----~dl~e~~~~~g~~~~l~G 327 (386)
. -.+ +-.....+.++.+-+. .+..+.+|+|+... .++.+.++++|+++++.. .+++-+++.-.++....|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~lG 264 (324)
T PF01717_consen 186 SFDRDEYLDEAVAAEALNRAVKG-EDATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRELPSGKKVVLG 264 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTST-TTSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHCTTTTSEEEEE
T ss_pred cccHHHHHHHHHHHHHHHhccCC-CCCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHhCcCCceEEEE
Confidence 1 111 1122233444443222 36788999997653 368999999999987532 356666663446677789
Q ss_pred cCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHHHHh
Q 016596 328 NVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEVAKA 383 (386)
Q Consensus 328 ~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a~~~ 383 (386)
-||+..- .-|+|+|++.+++.++.......+++|+||+..-+ -.+.++.|+++++|
T Consensus 265 vv~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 265 VVDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp ES-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 9988765 68999999999999998776789999999986543 34567778888875
|
1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B .... |
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-08 Score=105.09 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=130.6
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCC--C
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TEL--S 254 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~i--S 254 (386)
.++-+.+.||+|++..... + .+ ....++++.+...+.+.++.+.++|+..|++-+|.- ..+ .
T Consensus 542 ~~vK~~LtGPvT~l~~s~~----r----------~d-~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~~ 606 (750)
T TIGR01371 542 KPVKGMLTGPVTILNWSFV----R----------DD-IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPLR 606 (750)
T ss_pred CCCceEEechHHHHhhhhh----c----------cC-CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCcc
Confidence 5788999999998744321 0 01 123577888888888999999999999999988753 222 2
Q ss_pred HHHHHH---hhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-C---HHHHHH--HhCCCe
Q 016596 255 PVDFEE---FSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-D---MAEGRR--RLGPDV 323 (386)
Q Consensus 255 p~~f~e---f~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-d---l~e~~~--~~g~~~ 323 (386)
.+.+++ .+...++..++.+.. +..+.+|+| |+.. .++.+.++++|+++++..- + +..+.+ .++. -
T Consensus 607 ~~~~~~~l~~a~~~~~~~~~~v~~---~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~-~ 682 (750)
T TIGR01371 607 KSDWPEYLDWAVEAFRLATSGVKD---ETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPN-G 682 (750)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCC---CCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCC-e
Confidence 233444 333333333333332 346789999 6766 6899999999999998542 2 333333 2333 3
Q ss_pred eEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHHHHhh
Q 016596 324 AVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEVAKAI 384 (386)
Q Consensus 324 ~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a~~~y 384 (386)
...|-+|...- .-++|++.+.++++++.......+++|+|++..-. -...++.|++++++.
T Consensus 683 ig~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~ 747 (750)
T TIGR01371 683 IGPGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEA 747 (750)
T ss_pred EEEEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 66788888776 78999999999999998866689999999986544 445566788888765
|
This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717. |
| >COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-08 Score=93.88 Aligned_cols=192 Identities=17% Similarity=0.208 Sum_probs=136.3
Q ss_pred hCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCC
Q 016596 174 VNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATE 252 (386)
Q Consensus 174 ~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~ 252 (386)
+.. .|+.+.+.||.|++.+-.. + -+.. -+++...+...+.+.++.+.++|+..|++-++. +..
T Consensus 122 ~~~-~~~K~~ltGP~ti~~~s~~-----------~-~~~~---~~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~ 185 (330)
T COG0620 122 LTE-KPVKGMLTGPVTILLWSFN-----------R-YYIS---REELAKDIALALRDEVKDLEDAGIKIIQIDEPALREG 185 (330)
T ss_pred ccC-ccceeeeccHHhhHhhhcc-----------c-cCCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcC
Confidence 344 7888899999996655432 1 1222 357777888888889999999999999987754 222
Q ss_pred CCH---HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-hHHHHHhcCCCEEEcCCC---CC-HHHHHHHhCCCe
Q 016596 253 LSP---VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-LLERLALTGVDVVSLDWT---VD-MAEGRRRLGPDV 323 (386)
Q Consensus 253 iSp---~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~l~~l~e~g~d~l~~d~~---~d-l~e~~~~~g~~~ 323 (386)
+.. +.|.+.+...++..+..... +..+.+|+|.. .. .++.+.++.+|+++++.. ++ +..+.+.-.++-
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~~~~~---d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~~~~~ 262 (330)
T COG0620 186 LPLRRDDDYLEWAVEAINLAAAGVGA---DTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEEVKYDKE 262 (330)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCC---CcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHhccCCCe
Confidence 222 34666666666666555432 56788999965 44 468888999999988654 33 334444333454
Q ss_pred eEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHHHHHHHHHHHHhh
Q 016596 324 AVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 324 ~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~Eni~a~~~a~~~y 384 (386)
.-.|-+|...- .-|+|+|.+.+++.++......+.++|+|++ |...-.+.++.|+++++..
T Consensus 263 Ig~Gv~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~ 327 (330)
T COG0620 263 IGLGVVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEI 327 (330)
T ss_pred eecceEecCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 55677776665 6899999999999999998779999999997 4566777888888888753
|
|
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-07 Score=97.56 Aligned_cols=186 Identities=18% Similarity=0.138 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
.++.++..++ .| .++-..+.||+|++..... +. -+.++ .++++.+.....+.++.+.++|++.
T Consensus 132 ~~~e~~~A~~-~g--~~~Kpvl~GP~T~l~lsk~----~~-------~y~~~---~~ll~~L~~~y~~~l~~L~~~G~~~ 194 (750)
T TIGR01371 132 PLEEYLEAKE-LG--IETKPVLLGPITFLKLSKA----VE-------EPFEP---LSLLEKLLPVYKEVLKKLAEAGATW 194 (750)
T ss_pred HHHHHHHHHh-cC--CCCeEEEECHHHHHHHhCc----cC-------CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 3444444433 23 4556678899997755431 00 12333 3677888888888889999999999
Q ss_pred EEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHHH
Q 016596 243 VQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEGR 316 (386)
Q Consensus 243 i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~~ 316 (386)
|++-+|.- .-++++ ..+.+...++++...+. +.++++|+| |+.. .++.+.+++++++++|.. .++..+.
T Consensus 195 IQiDEP~L~~d~~~~-~~~~~~~ay~~l~~~~~----~~ki~l~tyFg~~~~~~~~l~~lpvd~l~lD~v~~~~~L~~~~ 269 (750)
T TIGR01371 195 VQIDEPALVTDLSKE-DLAAFKEAYTELSEALS----GLKLLLQTYFDSVGDALEALVSLPVKGIGLDFVHGKGTLELVK 269 (750)
T ss_pred EEeeCchhcCCCCHH-HHHHHHHHHHHHHhccC----CceEEEECCCCchHHHHHHHHcCCCCEEEEEeccCcccHHHHH
Confidence 99988864 334443 55555556666655442 346789999 8876 589999999999999754 3566555
Q ss_pred HHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHH
Q 016596 317 RRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEE 372 (386)
Q Consensus 317 ~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~E 372 (386)
..++ ++....|-||-... ..+++++.+.++++++.. ...+++|+|++ |.++..|
T Consensus 270 ~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~--~~l~v~psCsLlhvP~~~~~e 328 (750)
T TIGR01371 270 AGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV--GKLVVSTSCSLLHVPVDLELE 328 (750)
T ss_pred hcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC--CCEEEeCCCCcccCCccCccc
Confidence 4355 56777899998776 899999999999999953 35999999996 5555444
|
This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717. |
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-07 Score=96.58 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=127.9
Q ss_pred cCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhh
Q 016596 184 VGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFS 262 (386)
Q Consensus 184 ~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~ 262 (386)
+.||+|++...... ..+ +++ ..-.++++.+.....+.++.+.++|++.|+|-+|.- .-+++ .+.+.+
T Consensus 155 l~GP~T~l~Lsk~~---~~~-------~~~-~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~-~~~~~~ 222 (766)
T PLN02475 155 LVGPVSYLLLSKPA---KGV-------DKS-FDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLES-HKLQAF 222 (766)
T ss_pred EECHHHHHHHhccc---ccc-------cCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCH-HHHHHH
Confidence 78999987654420 001 111 113477888888888999999999999999988864 33444 567777
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcC-CCEEEcCCC---CCHHHHHHH-hC-CCeeEEecCCcCc
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTG-VDVVSLDWT---VDMAEGRRR-LG-PDVAVQGNVDPGA 333 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g-~d~l~~d~~---~dl~e~~~~-~g-~~~~l~G~vd~~~ 333 (386)
...++++.+.+. +.++++|+| |+.. .++.+.+++ +|++++|.. .++..+++. ++ ++....|-||-..
T Consensus 223 ~~ay~~l~~~~~----~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRN 298 (766)
T PLN02475 223 KTAYAELESTLS----GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRN 298 (766)
T ss_pred HHHHHHHHhccC----CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCC
Confidence 777777777653 357889999 8876 489999999 999999854 356666443 54 5677789899887
Q ss_pred c-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHH
Q 016596 334 L-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEE 372 (386)
Q Consensus 334 l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~E 372 (386)
. ..+.+++.+.++++++..+...++++|+|++ |.++..|
T Consensus 299 iw~~dl~~~~~~i~~~~~~~~~~~l~v~psCsLlhvP~~~~~e 341 (766)
T PLN02475 299 IWANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNE 341 (766)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCccCCcccccc
Confidence 6 8999999999999999776468999999996 5444433
|
|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-07 Score=94.52 Aligned_cols=180 Identities=17% Similarity=0.083 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++..+.+++. | .++-..+.||+|++..... .. -+.++ .++++.+.....+.++.+.++|++
T Consensus 137 ~~l~e~~~ak~~-g--~~~K~vl~GP~T~l~ls~~---~~--------~~~~~---~ell~dl~~~y~~~l~~L~~aG~~ 199 (758)
T PRK05222 137 KLLDEFEEAKAL-G--INTKPVLLGPVTFLWLSKS---KG--------EGFDR---LDLLDDLLPVYAELLAELAAAGAE 199 (758)
T ss_pred cHHHHHHHHHhC-C--CCceEEEccHHHHHHHhcc---cc--------cCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 445556656554 3 4667788999998733221 00 01222 467888888888999999999999
Q ss_pred EEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHH
Q 016596 242 AVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEG 315 (386)
Q Consensus 242 ~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~ 315 (386)
.|++-||. +..++++ ..+.+...++++.+.. ++..+.+|+| |+.. .++.+.++++|++++|.. .+++.+
T Consensus 200 ~IQiDEP~l~~~~~~~-~~~~~~~~y~~l~~~~----~~~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l 274 (758)
T PRK05222 200 WVQIDEPALVLDLPQE-WLEAFKRAYEALAAAK----PRPKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAAL 274 (758)
T ss_pred EEEeeCchhhcCCCHH-HHHHHHHHHHHHhcCC----CCCCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHH
Confidence 99998875 4456654 3344444555554421 1346889999 7665 479999999999988642 467777
Q ss_pred HHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 316 RRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 316 ~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
++.++ ++....|-||.... ..++|++.+.++++.+.. ..++++|+|++
T Consensus 275 ~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~lspsCgL 324 (758)
T PRK05222 275 LKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVAPSCSL 324 (758)
T ss_pred HhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEeCCCCC
Confidence 66453 56788899999876 899999999999999876 68999999996
|
|
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00086 Score=65.93 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=116.4
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC--cCC-CC
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSW--ATE-LS 254 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~--~~~-iS 254 (386)
.|+-|+++||.|++.+-.- ++..--|+-+-.+.-.+..-++.+..+|..+|++-++. -++ +.
T Consensus 553 rPmKGMLTgPvTiL~WSF~---------------R~D~~~~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR 617 (765)
T KOG2263|consen 553 RPMKGMLTGPVTILNWSFV---------------RNDQPRHETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLR 617 (765)
T ss_pred CcccccccCceEEEEeccc---------------cCCcchhHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcc
Confidence 5888999999987654321 11122245555566666667777888999999986643 132 33
Q ss_pred HHH---HHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecC
Q 016596 255 PVD---FEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 255 p~~---f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~v 329 (386)
... |-.+....++-....+.+. ..+--|.|=. .+ +++.++++.+|++++++.-+=.++...|...+---.+|
T Consensus 618 ~aE~~~Yl~WAv~aFRi~~sgVqd~---TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~I 694 (765)
T KOG2263|consen 618 KAEHSFYLDWAVHAFRITNSGVQDS---TQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 694 (765)
T ss_pred hhhHHHHHHHHHHHhhhcccccccc---chhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCc
Confidence 222 2222222222222223221 1234467743 34 67999999999999987544333333333322233345
Q ss_pred CcCcc------CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC----CCCcHHHHHHHHHHHHhh
Q 016596 330 DPGAL------FGSKDFITNRINDTVRKAGRWKHILNLGHGIK----VGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 330 d~~~l------~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~----~~tp~Eni~a~~~a~~~y 384 (386)
-|... .-+.+|+.+.+.+++.......+-++|+|++- +.+.+. ++.|++|++..
T Consensus 695 GpG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKTR~~~E~~~~-L~~Mv~AAk~~ 758 (765)
T KOG2263|consen 695 GPGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKTRGYTEVKPA-LKNMVAAAKLI 758 (765)
T ss_pred CCceecccCCCCCCHHHHHHHHHHHHHhcccccEEECCCcCcccCCCccccHH-HHHHHHHHHHH
Confidence 55432 37889999999999999887799999999984 355544 88899998864
|
|
| >PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0061 Score=58.34 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++.++.. +..| ..+...+-||+|.+..-.. .. .....++++.+.+...+.++.+.++|+.
T Consensus 135 ~~~~~~~eA-~~~G--~~~kpvL~GP~TfL~Lsk~----~~-----------~~~~~~ll~~l~~vY~~ll~~L~~~G~~ 196 (310)
T PF08267_consen 135 KLLDEFREA-KALG--INTKPVLPGPVTFLLLSKN----ED-----------GSDPLDLLDDLLPVYAELLKELAAAGVE 196 (310)
T ss_dssp HHHHHHHHH-HHTT--GGEEEEEE-HHHHHHTSEE----TT-----------CCHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred hHHHHHHHH-Hhhh--cCCeeEEEcHHHHHHHcCc----CC-----------CCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444444444 4444 3455567899997643221 10 0133468999999999999999999999
Q ss_pred EEEEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCC---CCHHHH
Q 016596 242 AVQIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWT---VDMAEG 315 (386)
Q Consensus 242 ~i~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~---~dl~e~ 315 (386)
-|++-+|.-. -+ ++.+.+-+...++++. .. .+.++++.+- |... .++.+.++|++++++|-. .++..+
T Consensus 197 ~VQldEP~Lv~d~-~~~~~~~~~~aY~~L~---~~--~~~~ill~TYFg~~~~~l~~l~~lpv~~l~lDlv~~~~~l~~~ 270 (310)
T PF08267_consen 197 WVQLDEPALVLDL-PEEWLEAFEEAYEELA---AA--PRPKILLATYFGDLGDNLELLLDLPVDGLHLDLVRGPENLEAL 270 (310)
T ss_dssp EEEEE-GGGGSSG-CHHHHHHHHHHHHHHC---CT--TTSEEEEE--SS--CCHHHHHTTSSESEEEEETTTHCHHHHHH
T ss_pred EEEecCCeeecCC-CHHHHHHHHHHHHHHh---cC--CCCcEEEECCCCchhhHHHHHhcCCCcEEEeeccCCcccHHHH
Confidence 9999888632 23 4556666666666665 22 2566666654 5544 689999999999999864 356677
Q ss_pred HH-Hh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHH
Q 016596 316 RR-RL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVR 350 (386)
Q Consensus 316 ~~-~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~ 350 (386)
.+ .+ .+++...|-||-... ..+.+++.+.++++.+
T Consensus 271 ~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~ 308 (310)
T PF08267_consen 271 LKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLRE 308 (310)
T ss_dssp HHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHh
Confidence 76 45 467788999998876 8888888888877754
|
The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A .... |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.48 Score=44.48 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcC---
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTG--- 300 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g--- 300 (386)
-++..+++++.+.++|.+.|=+.-+ ..||+.|+ .++.+.+..++..+..++-++...++...+.|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~---~~~~~~~~---------~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFP---AASPGDFE---------AVKRIAREVLNAEICGLARAVKKDIDAAAEALKPA 85 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHH---------HHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCC
Confidence 4566677888899999998876421 14787652 23333332234555555545554577777777
Q ss_pred -CCEEEcCCCC---------------CHHHH------HHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 301 -VDVVSLDWTV---------------DMAEG------RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 301 -~d~l~~d~~~---------------dl~e~------~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
++.+.+-... .+..+ .+..|.++++ +..+ .-..+++.+.+.++++.+.+.. .
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~--~~~~~~~~~~~~~~~~~~~G~~-~-- 159 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEF-SAED--ATRTDLDFLIEVVEAAIEAGAT-T-- 159 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE-eeec--CCCCCHHHHHHHHHHHHHcCCC-E--
Confidence 8877653211 11211 1223433332 2111 1146788888888888765322 2
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++....+ .-..|+.+..+++.+++
T Consensus 160 i~l~DT~-G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 160 INIPDTV-GYLTPEEFGELIKKLKE 183 (268)
T ss_pred EEECCCC-CCCCHHHHHHHHHHHHH
Confidence 3332222 23355667777777665
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.2 Score=41.65 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
..++.++.+++.||+.|-++.. ....++++.=.+-+.| +++.+++.. +.|+.+|+.... .++.-.+.|++
T Consensus 24 ~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~----~v~~~~~~~-~~plsiDT~~~~-vi~~al~~G~~ 97 (257)
T TIGR01496 24 KAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVP----VIKALRDQP-DVPISVDTYRAE-VARAALEAGAD 97 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH----HHHHHHhcC-CCeEEEeCCCHH-HHHHHHHcCCC
Confidence 3455667789999999998632 2236787653333444 455555542 578888875332 35555667999
Q ss_pred EEE-cCCC--CCHHHHHHHhCCCeeEEe--cCCcCc--c--C-CCHHHHHHHHHHHHHHcC-----CCCeEEecCCCCCC
Q 016596 303 VVS-LDWT--VDMAEGRRRLGPDVAVQG--NVDPGA--L--F-GSKDFITNRINDTVRKAG-----RWKHILNLGHGIKV 367 (386)
Q Consensus 303 ~l~-~d~~--~dl~e~~~~~g~~~~l~G--~vd~~~--l--~-gt~eev~~~v~~~i~~~~-----~~g~Ils~gc~i~~ 367 (386)
+++ +... .++.++.+++|-.+++|= +++... + + ...+++.+..++.++.+. ....||-||-+...
T Consensus 98 iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~k 177 (257)
T TIGR01496 98 IINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGK 177 (257)
T ss_pred EEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCccc
Confidence 985 4332 236677777877666642 222111 1 1 225667777777766543 24679999888654
Q ss_pred CCcHHHHHHHHHHHH
Q 016596 368 GTPEENVAHFFEVAK 382 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~ 382 (386)
+...|+ .++++.+
T Consensus 178 -s~~~~~-~~l~~i~ 190 (257)
T TIGR01496 178 -TPEHNL-ELLKHLE 190 (257)
T ss_pred -CHHHHH-HHHHHHH
Confidence 444443 3444443
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.65 Score=45.76 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..++.++.+.++|++.|=++-+. +|+..|+. ++.+.+..++..+..++-.+..-++...++|++.
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~---~~~~~~e~---------i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPA---MGEEERAV---------IRAIVALGLPARLMAWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHH---------HHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCE
Confidence 34556677888889999988765333 46655442 3333333223333333323333578888899988
Q ss_pred EEcC
Q 016596 304 VSLD 307 (386)
Q Consensus 304 l~~d 307 (386)
+.+-
T Consensus 89 i~i~ 92 (365)
T TIGR02660 89 VHIS 92 (365)
T ss_pred EEEE
Confidence 7654
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.75 Score=43.10 Aligned_cols=143 Identities=10% Similarity=0.009 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..+++++.+.++|++.|-++.|. .+|++++.. +.+. .... ...+..|.-.+..-++...+.|++.
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~P~---~~~~~~~~~-----~~l~-~~~~---~~~v~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTSPA---ASPQSRADC-----EAIA-KLGL---KAKILTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCC---CCHHHHHHH-----HHHH-hCCC---CCcEEEEecCCHHHHHHHHHcCcCE
Confidence 35566778888999999998876543 467766532 2222 1111 1234445544444578888999998
Q ss_pred EEcCC-----------CCCHHHHHHHh--------CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 304 VSLDW-----------TVDMAEGRRRL--------GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 304 l~~d~-----------~~dl~e~~~~~--------g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+.+.- ..+.+++.+.+ ...+.+..++- .....+++++.+.++++.+. +-..+.|. +
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e-da~r~~~~~l~~~~~~~~~~-g~~~i~l~---D 162 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE-DSFRSDLVDLLRVYRAVDKL-GVNRVGIA---D 162 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE-eeCCCCHHHHHHHHHHHHHc-CCCEEEEC---C
Confidence 76522 12333322222 01122322221 11234567777766666554 32234442 2
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 016596 365 IKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~ 383 (386)
.-.-..|+.+..+++.+++
T Consensus 163 t~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 163 TVGIATPRQVYELVRTLRG 181 (262)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 2223455667777777665
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.2 Score=40.38 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC
Q 016596 228 MAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD 302 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d 302 (386)
.++.++.+++.|||.|-++- +.+..+|++.-.+-+.|.++.+.+.. ++|+. ++-... .++.-.+.|++
T Consensus 40 a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-----~~~IS--IDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 40 AVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-----EVWIS--VDTSKPEVIRESAKAGAH 112 (282)
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCeEE--EECCCHHHHHHHHHcCCC
Confidence 34556668899999999874 23348999887777888877775433 34543 332233 46777788999
Q ss_pred EEE-cCC--CCCHHHHHHHhCCCeeEEec--CCcCcc--C---CC-HHHHHHHHHHHHHHc---C--CCCeEEecCCCCC
Q 016596 303 VVS-LDW--TVDMAEGRRRLGPDVAVQGN--VDPGAL--F---GS-KDFITNRINDTVRKA---G--RWKHILNLGHGIK 366 (386)
Q Consensus 303 ~l~-~d~--~~dl~e~~~~~g~~~~l~G~--vd~~~l--~---gt-~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~ 366 (386)
++| +.. ..++.+..++++-.+++|=. . |... . .+ .+++.+..++.++.+ | ....|+-||-++.
T Consensus 113 iINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~-p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~ 191 (282)
T PRK11613 113 IINDIRSLSEPGALEAAAETGLPVCLMHMQGN-PKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFG 191 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC-CCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcC
Confidence 994 322 12444545567766777532 2 2222 1 11 344444555555543 2 3488999998874
Q ss_pred CCCcHHHHHHH
Q 016596 367 VGTPEENVAHF 377 (386)
Q Consensus 367 ~~tp~Eni~a~ 377 (386)
. +..+|+.-+
T Consensus 192 k-~~~~n~~ll 201 (282)
T PRK11613 192 K-NLSHNYQLL 201 (282)
T ss_pred C-CHHHHHHHH
Confidence 3 445666444
|
|
| >COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.6 Score=41.18 Aligned_cols=149 Identities=18% Similarity=0.277 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCC-----c
Q 016596 220 LLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGS-----G 290 (386)
Q Consensus 220 ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~-----~ 290 (386)
-++.+.+...+.++.+++-|+|.+.+ +.. .+...-+ -+.-..++.++.... ..|+++|. -|. .
T Consensus 137 ~fd~l~~ay~eq~~~Li~gG~D~iLi-ET~---~D~l~~K-aA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~ 208 (311)
T COG0646 137 TFDELVEAYREQVEGLIDGGADLILI-ETI---FDTLNAK-AAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQT 208 (311)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEE-ehh---ccHHHHH-HHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCc
Confidence 36777888888899999999999875 333 3333222 233344455544433 36877764 332 2
Q ss_pred c--hHHHHHhcCCCEEEcCCCC-------CHHHHHHHhCCCeeEEecCC--cC---cc--CCCHHHHHHHHHHHHHHcCC
Q 016596 291 G--LLERLALTGVDVVSLDWTV-------DMAEGRRRLGPDVAVQGNVD--PG---AL--FGSKDFITNRINDTVRKAGR 354 (386)
Q Consensus 291 ~--~l~~l~e~g~d~l~~d~~~-------dl~e~~~~~g~~~~l~G~vd--~~---~l--~gt~eev~~~v~~~i~~~~~ 354 (386)
. ++..+..+|++++.+.=.. .+.++.+.-..-++...|-- .. .+ ..|||+..+.+....++++
T Consensus 209 ~~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~- 287 (311)
T COG0646 209 IEAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG- 287 (311)
T ss_pred HHHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC-
Confidence 2 3566777899988765332 33444444444455655532 21 12 4789999999999988863
Q ss_pred CCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 355 WKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 355 ~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
-=|++ ||- +|.||.|+||.++++
T Consensus 288 -vnIvG-GCC---GTTPeHIraia~~v~ 310 (311)
T COG0646 288 -VNIVG-GCC---GTTPEHIRAIAEAVK 310 (311)
T ss_pred -ceeec-ccc---CCCHHHHHHHHHHhc
Confidence 12444 554 678999999999986
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=95.05 E-value=3 Score=38.95 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g 300 (386)
+..++.++.+++.|||.|-++- +....++++.=.+-+.|..+.+-+.. +.|+.+-+ ... .++.-.+.|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-----~~plSIDT--~~~~v~e~al~~G 96 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-----DVLISVDT--FRAEVARAALEAG 96 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCcEEEeC--CCHHHHHHHHHhC
Confidence 3444566678999999999863 33447898876677777776665332 34543322 222 467677789
Q ss_pred CCEEE-cCCC---CCHHHHHHHhCCCeeEEe--cCCcCc--c---CCCHHHHHHHHHHHHHHcC--C---CCeEEecCCC
Q 016596 301 VDVVS-LDWT---VDMAEGRRRLGPDVAVQG--NVDPGA--L---FGSKDFITNRINDTVRKAG--R---WKHILNLGHG 364 (386)
Q Consensus 301 ~d~l~-~d~~---~dl~e~~~~~g~~~~l~G--~vd~~~--l---~gt~eev~~~v~~~i~~~~--~---~g~Ils~gc~ 364 (386)
+++++ +... ..+.++.+++|-.+++|= +++... . ....+++.+..++.++.+. | ...|+-||.+
T Consensus 97 ~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~g 176 (257)
T cd00739 97 ADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIG 176 (257)
T ss_pred CCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCC
Confidence 99985 5432 235555667776666642 222211 1 1225677777777777654 2 3789999988
Q ss_pred CCCCCcHHHH
Q 016596 365 IKVGTPEENV 374 (386)
Q Consensus 365 i~~~tp~Eni 374 (386)
.... ...|+
T Consensus 177 f~ks-~~~~~ 185 (257)
T cd00739 177 FGKT-PEHNL 185 (257)
T ss_pred cccC-HHHHH
Confidence 6443 44443
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.1 Score=42.57 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVD 302 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d 302 (386)
.++++.+++.|++++++..+.+. .+|.+..++++ +..++.+.+ ..|++.|++.++. -+ ....+.|+|
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~----~~~~~~~~~---~~pvi~gv~~~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVV----RAAVEETAG---RVPVLAGAGYGTATAIAYAQAAEKAGAD 96 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCCEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 34455667799999998877764 79999888874 444555543 4789999876443 23 444567888
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 97 ~v~~ 100 (289)
T cd00951 97 GILL 100 (289)
T ss_pred EEEE
Confidence 7654
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.4 Score=41.15 Aligned_cols=140 Identities=12% Similarity=0.067 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..+++++.+.++|++.|-++-+. +++..++ .++.+.+...+..+..+.-.+..-++...+.|++.
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~---~~~~~~e---------~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPA---MGEEERE---------AIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTA 85 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---CCHHHHH---------HHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCE
Confidence 45666778888889999988765332 4554432 33333332223444445323433467788899998
Q ss_pred EEcCCCCCH-----------H----------HHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 304 VSLDWTVDM-----------A----------EGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 304 l~~d~~~dl-----------~----------e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
+.+-...+- + +..+..|-.+.+ + ...- .-+++.+.+.++++.+.+.. .+.|
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~---~~~~~~~~~~~~~~~~~~~~~~G~~-~i~l-- 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV-G---AEDASRADPDFLIEFAEVAQEAGAD-RLRF-- 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE-e---eccCCCCCHHHHHHHHHHHHHCCCC-EEEe--
Confidence 765322111 1 122223433221 1 1222 46788888888877664323 3333
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh
Q 016596 362 GHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|+.-.-..|+.+..+++++++
T Consensus 159 -~DT~G~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 159 -ADTVGILDPFTTYELIRRLRA 179 (259)
T ss_pred -CCCCCCCCHHHHHHHHHHHHH
Confidence 222223456667777777765
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.88 E-value=1 Score=44.54 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++..++.++.+.++|++.|=++-|. ++++.|+ .++.+.+.+....+..++-....-++...++|++.+
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G~p~---~~~~~~e---------~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 92 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAGFPA---VSEDEKE---------AIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAV 92 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC---cChHHHH---------HHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEE
Confidence 4455677788889999988765333 5666654 233333332222333442222224788888999877
Q ss_pred Ec
Q 016596 305 SL 306 (386)
Q Consensus 305 ~~ 306 (386)
.+
T Consensus 93 ~i 94 (378)
T PRK11858 93 HI 94 (378)
T ss_pred EE
Confidence 65
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.6 Score=38.55 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHH
Q 016596 215 KVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLE 294 (386)
Q Consensus 215 e~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~ 294 (386)
..-+++.+.=.+...+.++.|++.|||.|-+.-. .+++.=.+-+.|..+.+ .+.. +.|+.+-+ -+...++
T Consensus 14 ~~~~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~----~~~~eE~~r~~~~v~~l----~~~~-~~plsIDT-~~~~v~e 83 (261)
T PRK07535 14 SIAEAIEAKDAAFIQKLALKQAEAGADYLDVNAG----TAVEEEPETMEWLVETV----QEVV-DVPLCIDS-PNPAAIE 83 (261)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC----CCchhHHHHHHHHHHHH----HHhC-CCCEEEeC-CCHHHHH
Confidence 3334455566677888889999999999877543 23333233344444444 3332 45654333 1222456
Q ss_pred HHHhc--CCCEEE-cCCC----CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc---C--CCCeEEecC
Q 016596 295 RLALT--GVDVVS-LDWT----VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA---G--RWKHILNLG 362 (386)
Q Consensus 295 ~l~e~--g~d~l~-~d~~----~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~---~--~~g~Ils~g 362 (386)
.-.+. |.++++ +... ..+.++.+++|-.++++- .+....-.|.++..+..++.++.+ | ...+|+-||
T Consensus 84 aaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~-~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPg 162 (261)
T PRK07535 84 AGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALT-MDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPL 162 (261)
T ss_pred HHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC
Confidence 55665 889884 4321 124556677776666654 232222345666666666666554 3 257899998
Q ss_pred CCC
Q 016596 363 HGI 365 (386)
Q Consensus 363 c~i 365 (386)
-+.
T Consensus 163 i~~ 165 (261)
T PRK07535 163 VLP 165 (261)
T ss_pred CCc
Confidence 773
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.4 Score=41.86 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|++...++ ++.+.+.+++ ..+++.|.++... .+ ....+.|
T Consensus 24 l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~----~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 24 LRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEEL----IRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHH----HHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 344555667799999998776654 7999998886 3445555543 4789999987543 23 4556789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|.+.+
T Consensus 97 ~d~v~~ 102 (292)
T PRK03170 97 ADGALV 102 (292)
T ss_pred CCEEEE
Confidence 997755
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.4 Score=41.87 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 223 KFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 223 ~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
.-++..+++++.+.++|++.|=+. +|.+|+.+-...-+ .+.+..+.+. ++..+ ...+-+..-++.-.+.|++
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvg----sf~~p~~~p~~~d~--~e~~~~l~~~-~~~~~-~~l~~~~~~ie~A~~~g~~ 94 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVA----SFVSPKWVPQMADA--AEVMAGIQRR-PGVTY-AALTPNLKGLEAALAAGAD 94 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC----CCcCcccccccccH--HHHHHhhhcc-CCCeE-EEEecCHHHHHHHHHcCCC
Confidence 345666778888999999987654 45555544322211 3444444332 23333 3344333347888899999
Q ss_pred EEEcCCCC-----------CHH----------HHHHHhCCCeeEEecCCcCc-----cCCCHHHHHHHHHHHHHHcCCCC
Q 016596 303 VVSLDWTV-----------DMA----------EGRRRLGPDVAVQGNVDPGA-----LFGSKDFITNRINDTVRKAGRWK 356 (386)
Q Consensus 303 ~l~~d~~~-----------dl~----------e~~~~~g~~~~l~G~vd~~~-----l~gt~eev~~~v~~~i~~~~~~g 356 (386)
.+.+.-.. +.+ +..+..| +.+.++|.... -..+++.+.+.++++.+.+.+ .
T Consensus 95 ~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d-~ 171 (287)
T PRK05692 95 EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY-E 171 (287)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc-E
Confidence 77543111 111 1112233 23444443211 135778888888887765323 3
Q ss_pred eEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 357 HILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 357 ~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+.|. ..+ .-..|+.+..+++.+++
T Consensus 172 i~l~--DT~-G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 172 ISLG--DTI-GVGTPGQVRAVLEAVLA 195 (287)
T ss_pred EEec--ccc-CccCHHHHHHHHHHHHH
Confidence 3332 222 22345556677766654
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.8 Score=39.72 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCCc-c--hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGSG-G--LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~~-~--~l~~l~e~g 300 (386)
.++.++...+.|+|++.+.-|.-.-.|+ +-+.-|++++.++. +.|++++. +|.. + .+..+.+.+
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~----~~i~~~~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~~~ 152 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQ----EGLYQHFKAIAEEV-----DLPIILYNVPSRTGVSLYPETVKRLAEEP 152 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECcHHhcCCCCHHHHHHHHcCC
Confidence 4455666778999999987665433443 44556888888876 35777774 4543 2 356666655
Q ss_pred CCEEEc-CCCCCH---HHHHHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDM---AEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl---~e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+ .++++..+++..++.|-|.
T Consensus 153 -~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d~ 186 (285)
T TIGR00674 153 -NIVAIKEATGNLERISEIKAIAPDDFVVLSGDDA 186 (285)
T ss_pred -CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECchH
Confidence 56665 444454 4555666666677666653
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.5 Score=41.49 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|.+.+++.+ +..++.+++ ..+++.|++.+.. -+ ....+.|
T Consensus 21 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 21 LEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVI----EFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 344555667899999998776664 79999988874 445555543 4688888876543 23 4556789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 94 ad~v~v 99 (285)
T TIGR00674 94 ADGFLV 99 (285)
T ss_pred CCEEEE
Confidence 998754
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.9 Score=42.40 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++-.++.++.+.++|++.|=++-+. .|++.|+ ..+++.+ .+....+..|+..+..-++...++|++.
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~p~---~~~~~~e-----~i~~i~~----~~~~~~v~~~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGFPI---ASEGEFE-----AIKKISQ----EGLNAEICSLARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CChHHHH-----HHHHHHh----cCCCcEEEEEcccCHHHHHHHHHcCcCE
Confidence 34556677788889999988764332 4555542 2233333 2223455556655544578888999998
Q ss_pred EEcCCCC-----------CH----H------HHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 304 VSLDWTV-----------DM----A------EGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 304 l~~d~~~-----------dl----~------e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
+.+.-.. +. . +..+..|-++.+ ....- ..+++.+.+.++++.+.+.+ .+.|.
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~----~~eda~r~~~~~l~~~~~~~~~~g~~-~i~l~- 161 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF----SAEDATRTDIDFLIKVFKRAEEAGAD-RINIA- 161 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE----EEeecCCCCHHHHHHHHHHHHhCCCC-EEEEe-
Confidence 7652211 11 1 111223333222 11222 46778888877776654323 34442
Q ss_pred CCCCCCCCcHHHHHHHHHHHHh
Q 016596 362 GHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+.-....|+.+..+++.+++
T Consensus 162 --DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 162 --DTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred --CCCCccCHHHHHHHHHHHhc
Confidence 22233455567777766654
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.12 E-value=5 Score=37.43 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~ 301 (386)
+...+.++.+++.|||.|-++-. .+..+|++.=.+-+.|..+.+.+.. +.|+.+-+ -+...++.-.+.|+
T Consensus 24 ~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-----~~piSIDT-~~~~v~~aaL~~g~ 97 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-----DVPISVDT-FNAEVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-----CCeEEEeC-CcHHHHHHHHHhCC
Confidence 44556677789999999988742 2347888775565666666554322 34543222 12224677778889
Q ss_pred CEEE-cCCC---CCHHHHHHHhCCCeeEEecCC-cCc---c---CCCHHHHHHHHHHHHHHcC-----CCCeEEecCCCC
Q 016596 302 DVVS-LDWT---VDMAEGRRRLGPDVAVQGNVD-PGA---L---FGSKDFITNRINDTVRKAG-----RWKHILNLGHGI 365 (386)
Q Consensus 302 d~l~-~d~~---~dl~e~~~~~g~~~~l~G~vd-~~~---l---~gt~eev~~~v~~~i~~~~-----~~g~Ils~gc~i 365 (386)
++++ +... ..+.++.+.+|-.++++-.-+ +.. + ..+.+++.+.+++.++.+. ....|+-||-+.
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~ 177 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGF 177 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCc
Confidence 9884 4322 235666777877677764321 221 1 2356777777777777653 247899999886
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 016596 366 KVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 366 ~~~tp~Eni~a~~~a~~~ 383 (386)
.. +...|+ .+++..+.
T Consensus 178 ~k-~~~~~~-~~l~~i~~ 193 (258)
T cd00423 178 GK-TEEHNL-ELLRRLDA 193 (258)
T ss_pred cC-CHHHHH-HHHHHHHH
Confidence 54 444554 34444433
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.4 Score=43.01 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++.-+++++.+.++|++.|=+. ++.||+..-.+. -.+++++.+++. .+..+. -.|.+..-++...++|++.
T Consensus 66 s~e~Ki~ia~~L~~~GV~~IEvG----s~vspk~vPqma--d~~ev~~~i~~~-~~~~~~-~l~~n~~die~A~~~g~~~ 137 (347)
T PLN02746 66 PTSVKVELIQRLVSSGLPVVEAT----SFVSPKWVPQLA--DAKDVMAAVRNL-EGARFP-VLTPNLKGFEAAIAAGAKE 137 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC----CCcCcccccccc--cHHHHHHHHHhc-cCCcee-EEcCCHHHHHHHHHcCcCE
Confidence 34555677888889999988654 234554221111 112233333331 122222 2244444578888999887
Q ss_pred EEcC
Q 016596 304 VSLD 307 (386)
Q Consensus 304 l~~d 307 (386)
+++.
T Consensus 138 v~i~ 141 (347)
T PLN02746 138 VAVF 141 (347)
T ss_pred EEEE
Confidence 6553
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.6 Score=40.28 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCCE
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVDV 303 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d~ 303 (386)
+.++.+++.|+++|++..+.+. .+|++..++++ +.+++.+.+ .+|++.|+++++. -+ ....+.|+|+
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~~pvi~gv~~~t~~~i~~~~~a~~~Gada 104 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVV----RAAVETTAG---RVPVIAGAGGGTAQAIEYAQAAERAGADG 104 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCcEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence 4445567789999998777764 79999888863 344555543 4789999976443 23 4445678887
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
+.+
T Consensus 105 v~~ 107 (303)
T PRK03620 105 ILL 107 (303)
T ss_pred EEE
Confidence 644
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.46 E-value=4.8 Score=38.51 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCC-cCCCCH-------------------HHHHHhh--HHHHHHHHHHHHhhCCCCcEEEE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSW-ATELSP-------------------VDFEEFS--LPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~-~~~iSp-------------------~~f~ef~--~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
..+.+++..++|||+|-+=.-. .+.||+ +.|++.. +.++.++.+.+++. | +++.
T Consensus 32 A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~--G--i~~~ 107 (347)
T COG2089 32 AKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKR--G--IIFF 107 (347)
T ss_pred HHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHc--C--eEEE
Confidence 3455667778999987542211 122332 3455444 55678999999986 3 3444
Q ss_pred ecCCcc-hHHHHHhcCCCEEEcC--CCCCHHHHHH--HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 286 ASGSGG-LLERLALTGVDVVSLD--WTVDMAEGRR--RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 286 ~cG~~~-~l~~l~e~g~d~l~~d--~~~dl~e~~~--~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+---.. -.+.+..+++.++-+. +.+++.-++. +.++-+.+.-|+ .|-+||.+.+.-+-+.+.+ .++|-
T Consensus 108 SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGm------a~~~ei~~av~~~r~~g~~-~i~LL 180 (347)
T COG2089 108 SSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGM------ATIEEIEEAVAILRENGNP-DIALL 180 (347)
T ss_pred ecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEccc------ccHHHHHHHHHHHHhcCCC-CeEEE
Confidence 443332 4688888998888553 2345544443 345555554444 5677888777666555434 34443
Q ss_pred cCCCCCCCCc--HHHHHHHHHHHHhh
Q 016596 361 LGHGIKVGTP--EENVAHFFEVAKAI 384 (386)
Q Consensus 361 ~gc~i~~~tp--~Eni~a~~~a~~~y 384 (386)
-|.-..-+| .-|+++|.+....|
T Consensus 181 -hC~s~YPap~ed~NL~~i~~l~~~F 205 (347)
T COG2089 181 -HCTSAYPAPFEDVNLKAIPKLAEAF 205 (347)
T ss_pred -EecCCCCCCHHHhhHHHHHHHHHHh
Confidence 355444444 45888888877666
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=4.8 Score=38.71 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
++.+.+.|+..+++.......+. .+++.++++.+++.. +..+.+ +.|... .+..|.+.|++.+++
T Consensus 79 ~~~~~~~g~~~i~l~gG~~~~~~--------~~~l~~l~~~i~~~~-~l~i~~-~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 79 AKKAYELGYRTIVLQSGEDPYYT--------DEKIADIIKEIKKEL-DVAITL-SLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred HHHHHHCCCCEEEEecCCCCCCC--------HHHHHHHHHHHHccC-CceEEE-ecCCCCHHHHHHHHHcCCCEEEe
Confidence 34455679998887532222233 246677888888742 444333 235543 489999999997765
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=93.38 E-value=4 Score=37.31 Aligned_cols=136 Identities=19% Similarity=0.181 Sum_probs=81.5
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC--C------c-chHHH----HHh
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG--S------G-GLLER----LAL 298 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG--~------~-~~l~~----l~e 298 (386)
++..++.|++.+.+-...+.. + ++......+++.+..+++ +.++++-.+- . . ..+.. ..+
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~-~----~~~~~~~i~~v~~~~~~~--g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~ 154 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSE-E----EREMLEELARVAAEAHKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE 154 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCc-h----HHHHHHHHHHHHHHHHHc--CCCEEEEEeccCCcccCccCHHHHHHHHHHHHH
Confidence 455778999987543333322 1 345566678888888876 6787764322 1 1 12333 567
Q ss_pred cCCCEEEcCCCCCHHHHHH---HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHH
Q 016596 299 TGVDVVSLDWTVDMAEGRR---RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENV 374 (386)
Q Consensus 299 ~g~d~l~~d~~~dl~e~~~---~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni 374 (386)
.|+|.+.+.+..+++.+++ ..+-.+.+.||+.. .|+++..+.++++++.+.. |+.++. .+ ...-|.+-+
T Consensus 155 ~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~----~~~~~~l~~~~~~~~~Ga~-gv~vg~--~i~~~~dp~~~~ 227 (235)
T cd00958 155 LGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKK----DSEEEFLKMVYDAMEAGAA-GVAVGR--NIFQRPDPVAML 227 (235)
T ss_pred HCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCC----CCHHHHHHHHHHHHHcCCc-EEEech--hhhcCCCHHHHH
Confidence 8999998776556655554 44434555566532 5788888889999886533 554443 33 223356666
Q ss_pred HHHHHHH
Q 016596 375 AHFFEVA 381 (386)
Q Consensus 375 ~a~~~a~ 381 (386)
+++.+.+
T Consensus 228 ~~~~~~~ 234 (235)
T cd00958 228 RAISAVV 234 (235)
T ss_pred HHHHHHh
Confidence 6665544
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.3 Score=37.78 Aligned_cols=150 Identities=17% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~ 294 (386)
++.+.+..++-++.+.+.|+|+|.+-. |+..-.+|+. ...+-+++..+++.- +.|+-+.+--|.. -|.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~et-----vaaM~~i~~~v~~~~-~~p~GVnvL~nd~~aala 97 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPET-----VAAMARIAREVRREV-SVPVGVNVLRNDPKAALA 97 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHH-----HHHHHHHHHHHHHhC-CCCEEeeeecCCCHHHHH
Confidence 666777788888999999999998754 2222344433 445667777777753 4565554433222 245
Q ss_pred HHHhcCCCEEEc---------CCC------CCHHHHHHHhCCCeeEEecCCcCc---c-CCCHHHHHHHHHHHHHHcCCC
Q 016596 295 RLALTGVDVVSL---------DWT------VDMAEGRRRLGPDVAVQGNVDPGA---L-FGSKDFITNRINDTVRKAGRW 355 (386)
Q Consensus 295 ~l~e~g~d~l~~---------d~~------~dl~e~~~~~g~~~~l~G~vd~~~---l-~gt~eev~~~v~~~i~~~~~~ 355 (386)
.-..+|.+-+-+ ++. .++-..|+.++.++.++++|.... | ..+ +.+.++.+++.+...
T Consensus 98 iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~---~~~~~~~a~~~~~aD 174 (254)
T PF03437_consen 98 IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRD---LEEAAKDAVERGGAD 174 (254)
T ss_pred HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCC---HHHHHHHHHHhcCCC
Confidence 455567664431 111 245677888998899999998853 3 233 445566776666644
Q ss_pred CeEEecCCCCCCCCcHHHHHHHHHH
Q 016596 356 KHILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 356 g~Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
+.|++ |-..-..++++.++.+.++
T Consensus 175 aviVt-G~~TG~~~~~~~l~~vr~~ 198 (254)
T PF03437_consen 175 AVIVT-GKATGEPPDPEKLKRVREA 198 (254)
T ss_pred EEEEC-CcccCCCCCHHHHHHHHhc
Confidence 66665 3333344556666555443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=5.8 Score=37.61 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCcc---hHHHHHhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSGG---LLERLALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~~---~l~~l~e~ 299 (386)
-.++.++...++|+|++.+.-|.-.-.|+ +-+.-|++++.+.. +.|++++.+ |..- .+..+.+.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~----~~i~~~~~~ia~~~-----~~pv~lYn~P~~~g~~l~~~~~~~L~~~ 154 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQ----EGLYQHFKAIAEAT-----DLPIILYNVPGRTGVDILPETVARLAEH 154 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHHcC
Confidence 34456667778999999986665333443 33456788888775 357777754 3321 24444444
Q ss_pred CCCEEEc-CCCCCHHH---HHHHhCCCeeEEecCCc
Q 016596 300 GVDVVSL-DWTVDMAE---GRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 300 g~d~l~~-d~~~dl~e---~~~~~g~~~~l~G~vd~ 331 (386)
+ +++.+ +...|+.. ..+..+++..++.+-|.
T Consensus 155 p-~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~ 189 (292)
T PRK03170 155 P-NIVGIKEATGDLERVSELIELVPDDFAVYSGDDA 189 (292)
T ss_pred C-CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChH
Confidence 3 45544 33445554 44445555566555543
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=5.9 Score=35.78 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCEEE-EecC-CcCCCCHHHHHHhhH--------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--h
Q 016596 231 YVQYQADNGAQAVQ-IFDS-WATELSPVDFEEFSL--------------PYLKQIVDTVKQTHPDLSLILYASGSGG--L 292 (386)
Q Consensus 231 ~~~~~~e~G~d~i~-i~d~-~~~~iSp~~f~ef~~--------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~ 292 (386)
-++...++|+|.+- ++.+ +.-++|+++.++... +....+.+.+++. + +-+++.+|+.. .
T Consensus 15 da~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~--~-~d~vQLHg~e~~~~ 91 (210)
T PRK01222 15 DAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETV--P-LDLLQLHGDETPEF 91 (210)
T ss_pred HHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhc--C-CCEEEECCCCCHHH
Confidence 35566788999774 3433 344899998887653 2344566666664 2 34677777654 3
Q ss_pred HHHHHh-cCCCEE---EcCCCCCHHHHHHH-------------------------------hCCCeeEEecCCcCccCCC
Q 016596 293 LERLAL-TGVDVV---SLDWTVDMAEGRRR-------------------------------LGPDVAVQGNVDPGALFGS 337 (386)
Q Consensus 293 l~~l~e-~g~d~l---~~d~~~dl~e~~~~-------------------------------~g~~~~l~G~vd~~~l~gt 337 (386)
+..+.+ .+..++ ++....++..+++. ++..+.|.||+ |
T Consensus 92 ~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~~~~~p~~LAGGi-------~ 164 (210)
T PRK01222 92 CRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPAGLAKPWILAGGL-------N 164 (210)
T ss_pred HHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhhccCCCEEEECCC-------C
Confidence 555554 233333 22221233333222 22223333333 3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHHHHHHHHHHhh
Q 016596 338 KDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 338 ~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni~a~~~a~~~y 384 (386)
||.|.+.+ +..+..|.=+++|-+. |.--.++.+++++++++.+
T Consensus 165 peNv~~ai----~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 165 PDNVAEAI----RQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred HHHHHHHH----HhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHhh
Confidence 45554444 3344446667777776 3345888899998888764
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=7.3 Score=36.53 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=87.8
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-------cCCcc--h----HHHHHh
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-------SGSGG--L----LERLAL 298 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-------cG~~~--~----l~~l~e 298 (386)
++..++.|+|.+.+-..+++.- ++...-..+++.+.+++. |.|++++. .+... . .....+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~~~-----~~~~~~~~~~v~~~~~~~--g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGSET-----EAEMLEDLGEVAEECEEW--GMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred HHHHHHcCCCEEEEEEecCChh-----HHHHHHHHHHHHHHHHHc--CCcEEEEEecCCCccCCCccHHHHHHHHHHHHH
Confidence 3356889999887765544321 333566678888888876 57877762 22111 1 234457
Q ss_pred cCCCEEEcCCCCCHHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHH
Q 016596 299 TGVDVVSLDWTVDMAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENV 374 (386)
Q Consensus 299 ~g~d~l~~d~~~dl~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni 374 (386)
.|+|.+-..+..+++.+++.. +-.+...||++. .|.++..+.++++++.+.. |. +.|-.+ ..+-|.+.+
T Consensus 172 ~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~GGi~~----~~~~~~l~~v~~~~~aGA~-Gi--s~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 172 LGADIVKTNYTGDPESFREVVEGCPVPVVIAGGPKT----DTDREFLEMVRDAMEAGAA-GV--AVGRNVFQHEDPEAIT 244 (267)
T ss_pred HCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCCc-EE--ehhhhhhcCCCHHHHH
Confidence 899999666555666555554 334777888864 4668888888888887544 33 333333 334478888
Q ss_pred HHHHHHHHh
Q 016596 375 AHFFEVAKA 383 (386)
Q Consensus 375 ~a~~~a~~~ 383 (386)
+++...+++
T Consensus 245 ~~l~~~v~~ 253 (267)
T PRK07226 245 RAISAVVHE 253 (267)
T ss_pred HHHHHHHhC
Confidence 888777664
|
|
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=8.3 Score=36.43 Aligned_cols=143 Identities=16% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhc
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALT 299 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~ 299 (386)
+..++.++.+++.|||.|-++-. .+..+|++.=.+-+.|.++.+.+ . +.++ +..... .++.-.+.
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~----~--~~~I---SIDT~~~~va~~al~a 95 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSD----Q--MHRV---SIDSFQPETQRYALKR 95 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHh----C--CCcE---EEECCCHHHHHHHHHc
Confidence 44455666788999999998752 33589998877777788777653 2 2343 222222 36777789
Q ss_pred CCCEEE-cCCCC--CHHHHHHHhCCCeeEEecC-----CcCc-c--CCC-HHHHHHHHHHHHHHc---C--CCCeEEecC
Q 016596 300 GVDVVS-LDWTV--DMAEGRRRLGPDVAVQGNV-----DPGA-L--FGS-KDFITNRINDTVRKA---G--RWKHILNLG 362 (386)
Q Consensus 300 g~d~l~-~d~~~--dl~e~~~~~g~~~~l~G~v-----d~~~-l--~gt-~eev~~~v~~~i~~~---~--~~g~Ils~g 362 (386)
|+++++ +.... .+.++....+-.+++|=+- .+.. . +.. .+||.++..+.++.+ | ....||-||
T Consensus 96 GadiINDVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPG 175 (279)
T PRK13753 96 GVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPG 175 (279)
T ss_pred CCCEEEeCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCC
Confidence 999984 44333 3444455566667775432 1211 1 111 334555555544443 3 358999999
Q ss_pred CCCC-CCCcHHHHHHH
Q 016596 363 HGIK-VGTPEENVAHF 377 (386)
Q Consensus 363 c~i~-~~tp~Eni~a~ 377 (386)
-|.. ..++..|+.-+
T Consensus 176 iGF~k~k~~~~n~~ll 191 (279)
T PRK13753 176 MGFFLSPAPETSLHVL 191 (279)
T ss_pred CCCCCCCChHHHHHHH
Confidence 9985 34667777544
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=92.86 E-value=4.8 Score=38.65 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|+++|++..+.+. .||.+..++++.- .++.+.+ .+|++.|+.++.+ -+ ....+.|+
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~----~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVAT----VVETVAG---RVPVFVGATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHH----HHHHhCC---CCCEEEEeccCCHHHHHHHHHHHHHhCC
Confidence 34555677899999999887764 7999998886543 3444432 4788888876543 22 45567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 105 d~vlv 109 (309)
T cd00952 105 DGTML 109 (309)
T ss_pred CEEEE
Confidence 97754
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.85 E-value=3.3 Score=40.79 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
++..++++.+.+.|+|-|+| -+.+++++|..-- +++..+|+.. +.|+.+|++-.... .-++ .|.|+
T Consensus 156 e~yv~~akel~~~g~DSIci-KDmaGlltP~~ay--------elVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGv 225 (472)
T COG5016 156 EYYVELAKELLEMGVDSICI-KDMAGLLTPYEAY--------ELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGV 225 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEe-ecccccCChHHHH--------HHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCc
Confidence 44556777889999999987 4566789986643 4567788776 58999999876652 4444 47899
Q ss_pred CEEEc-----CC---CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 302 DVVSL-----DW---TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
|++.. .+ ..+.+.....+.+. +-|+.+...-.+++.++.+++.+..
T Consensus 226 D~iDTAisp~S~gtsqP~tEtmv~aL~gt-----~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 226 DGIDTAISPLSGGTSQPATETMVAALRGT-----GYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred chhhhhhccccCCCCCCcHHHHHHHhcCC-----CCCccccHHHHHHHHHHHHHHHHHH
Confidence 87632 11 24555555555431 4455443444567777777666655
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.1 Score=39.13 Aligned_cols=73 Identities=14% Similarity=0.278 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~ 299 (386)
.+.++++.+++.|++++++..+.+. .+|.+..++.+ +.+.+.++. ..+++.|+.+... .+ ....+.
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVI----EAVVEAVAG---RVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHHc
Confidence 3445556677789999998877764 79988887764 344444432 4789999887653 23 455677
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|+|++.+
T Consensus 92 Gad~v~v 98 (281)
T cd00408 92 GADGVLV 98 (281)
T ss_pred CCCEEEE
Confidence 9887754
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=92.60 E-value=7.1 Score=37.16 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCCE
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVDV 303 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d~ 303 (386)
+.++.+++.|++++++..+.+. .+|.+..++++.- .++.+++ ..|++.|+..++. -+ ....+.|+|+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~----~~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEI----AVSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHH----HHHHhCC---CCcEEEecCccHHHHHHHHHHHHHhCCCE
Confidence 3444566899999998777764 7999888776543 3444433 4688888865432 12 3334567766
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
+.
T Consensus 103 v~ 104 (296)
T TIGR03249 103 YL 104 (296)
T ss_pred EE
Confidence 54
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.49 E-value=5.6 Score=38.04 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.+.++.+++.|+++|++..+.+. .+|.+...+. .+..++.+.. .+|++.+..++.+ -+ ....+.|+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v----~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEV----LEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHH----HHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 34455678899999999887764 7998887775 3445555543 3789999988854 23 44567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 101 d~il~ 105 (299)
T COG0329 101 DGILV 105 (299)
T ss_pred CEEEE
Confidence 98754
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.20 E-value=4.2 Score=41.97 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHH----HHHhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLE----RLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~----~l~e~g 300 (386)
++-.++.++.+.++|++.|=++-+ ..||+.|+.+ +++.+..+ +..+..++-....-++ .+.+.|
T Consensus 25 ~e~K~~ia~~L~~~Gv~~IE~G~p---~~s~~d~~~v-----~~i~~~~~----~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 25 VEEKLQIAKQLERLGVDVIEAGFP---ASSPGDFEAV-----KRIARTVK----NSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC---CCChHHHHHH-----HHHHhhCC----CCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 445567778888999998876433 3688877643 45544332 3445555533322233 334667
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
.+.+++
T Consensus 93 ~~~v~i 98 (513)
T PRK00915 93 APRIHT 98 (513)
T ss_pred CCEEEE
Confidence 666654
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.15 E-value=3.4 Score=38.94 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++.-+++++.+.++|++.|=++ ++.||+.+-.+.- ...++..+... .+..+..+ |.+..-++...++|++.+
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvG----s~~~~~~~p~~~d--~~~~~~~l~~~-~~~~~~~~-~~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVT----SFVSPKWVPQMAD--AEEVLAGLPRR-PGVRYSAL-VPNLRGAERALAAGVDEV 90 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC----CCCCcccccccCC--HHHHHhhcccC-CCCEEEEE-CCCHHHHHHHHHcCcCEE
Confidence 4666788889999999988754 3445543211110 00222232221 13333334 544445888889999887
Q ss_pred EcCCCC-----------CH----------HHHHHHhCCCeeEEecCCcCc---c--CCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 305 SLDWTV-----------DM----------AEGRRRLGPDVAVQGNVDPGA---L--FGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 305 ~~d~~~-----------dl----------~e~~~~~g~~~~l~G~vd~~~---l--~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.+.-.. +. -+..+..|. .+.+++.... . .-+++.+.+.++++.+.+.+ .+-
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~--~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~-~i~ 167 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL--RVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCD-EIS 167 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCC-EEE
Confidence 653222 11 112222333 3444443221 1 34677777777777654322 333
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|. ..+ .-..|+.+..+++.+++
T Consensus 168 l~--DT~-G~~~P~~v~~lv~~l~~ 189 (274)
T cd07938 168 LG--DTI-GVATPAQVRRLLEAVLE 189 (274)
T ss_pred EC--CCC-CccCHHHHHHHHHHHHH
Confidence 32 222 22345667777777654
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=6 Score=36.73 Aligned_cols=141 Identities=10% Similarity=0.063 Sum_probs=84.9
Q ss_pred HHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC--CC
Q 016596 234 YQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT--VD 311 (386)
Q Consensus 234 ~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~--~d 311 (386)
.+.+.|+..++ ...+-..=||.-|+.+...-++.+.+..++. |.+++-=.. +...++.+.+ .+|++-+... .+
T Consensus 37 ~~~~~g~~~~r-~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~--Gl~~~Tev~-d~~~v~~~~e-~vdilqIgs~~~~n 111 (250)
T PRK13397 37 SAKKLGYNYFR-GGAYKPRTSAASFQGLGLQGIRYLHEVCQEF--GLLSVSEIM-SERQLEEAYD-YLDVIQVGARNMQN 111 (250)
T ss_pred HHHHcCCCEEE-ecccCCCCCCcccCCCCHHHHHHHHHHHHHc--CCCEEEeeC-CHHHHHHHHh-cCCEEEECcccccC
Confidence 36678888665 4444466788899999888888888888876 567544332 2234677778 4999977543 33
Q ss_pred HH--HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH---HHHHHHHHHHhhc
Q 016596 312 MA--EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE---NVAHFFEVAKAIR 385 (386)
Q Consensus 312 l~--e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E---ni~a~~~a~~~yg 385 (386)
.. +...+.|+-+.+-=| +..|++|+...+..+.+. |...++|.-=|.....++.+ |++++-..-+.++
T Consensus 112 ~~LL~~va~tgkPVilk~G-----~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~ 184 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRG-----LMATIEEYLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTD 184 (250)
T ss_pred HHHHHHHHccCCeEEEeCC-----CCCCHHHHHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHhC
Confidence 33 322233321111111 257999999999988764 34567887634344445533 5555544433343
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=92.01 E-value=4.7 Score=38.02 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--h---HHHHHhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--L---LERLALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~---l~~l~e~ 299 (386)
.+.++++.+++.|++++++..+.+. .+|.+.+++++. ...+.... ..+++.+.++... - .....+.
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~----~~~~~~~~---~~~vi~gv~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIE----AVVEAVNG---RVPVIAGTGSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHH----HHHHHhCC---CCcEEeccCCccHHHHHHHHHHHHHc
Confidence 3445556677899999998766654 799999888643 33444432 4688889887543 1 3555678
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|+|.+.+
T Consensus 95 G~d~v~~ 101 (284)
T cd00950 95 GADAALV 101 (284)
T ss_pred CCCEEEE
Confidence 9997654
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=91.83 E-value=5.2 Score=39.33 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
+.++.+.+.|+..+. ...+-..=||.-|+.+....++.+.+..++. |.+++-=.+ +...++.+.++ ++++-+...
T Consensus 136 ~~A~~lk~~g~~~~r-~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~--Gl~~~t~v~-d~~~~~~l~~~-vd~lkI~s~ 210 (360)
T PRK12595 136 AVAKALKAKGLKLLR-GGAFKPRTSPYDFQGLGVEGLKILKQVADEY--GLAVISEIV-NPADVEVALDY-VDVIQIGAR 210 (360)
T ss_pred HHHHHHHHcCCcEEE-ccccCCCCCCccccCCCHHHHHHHHHHHHHc--CCCEEEeeC-CHHHHHHHHHh-CCeEEECcc
Confidence 334555668887655 2333345677779999999999999998887 566443222 23347888888 898877542
Q ss_pred --CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC---cHHHHHHHHHH
Q 016596 310 --VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT---PEENVAHFFEV 380 (386)
Q Consensus 310 --~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t---p~Eni~a~~~a 380 (386)
.+.. +.+..++. |. |..| ..|.+|+...+..+... |...++|.--|.....+ ..-|++++...
T Consensus 211 ~~~n~~-LL~~~a~~-----gk-PVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~l 282 (360)
T PRK12595 211 NMQNFE-LLKAAGRV-----NK-PVLLKRGLSATIEEFIYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLDISAVPIL 282 (360)
T ss_pred cccCHH-HHHHHHcc-----CC-cEEEeCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcCHHHHHHH
Confidence 3443 33333321 11 2222 47999999999988765 44568887533221111 11277776655
Q ss_pred HHhhc
Q 016596 381 AKAIR 385 (386)
Q Consensus 381 ~~~yg 385 (386)
-+.|+
T Consensus 283 k~~~~ 287 (360)
T PRK12595 283 KQETH 287 (360)
T ss_pred HHHhC
Confidence 55454
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.4 Score=45.09 Aligned_cols=87 Identities=23% Similarity=0.224 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcch--HHHH--Hhc
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGGL--LERL--ALT 299 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~~--l~~l--~e~ 299 (386)
.++.+++++.+.++|++.|.|.|..| ++.|....+ ++..+++..+ ++++-+|++.+... ...+ .+.
T Consensus 154 ~e~~~~~a~~l~~~Gad~I~IkDtaG-ll~P~~~~~--------LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieA 224 (499)
T PRK12330 154 VEGFVEQAKRLLDMGADSICIKDMAA-LLKPQPAYD--------IVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEA 224 (499)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcc-CCCHHHHHH--------HHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHc
Confidence 34556677778899999999877654 688877554 4455555432 57899999987653 3444 478
Q ss_pred CCCEEEcC-----C---CCCHHHHHHHhC
Q 016596 300 GVDVVSLD-----W---TVDMAEGRRRLG 320 (386)
Q Consensus 300 g~d~l~~d-----~---~~dl~e~~~~~g 320 (386)
|++.++.. . ..+++++...+.
T Consensus 225 Gad~vDtai~Glg~~aGn~atE~vv~~L~ 253 (499)
T PRK12330 225 GVDVVDTAISSMSLGPGHNPTESLVEMLE 253 (499)
T ss_pred CCCEEEeecccccccccchhHHHHHHHHH
Confidence 99988531 1 135555555553
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=91.47 E-value=10 Score=35.80 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
++.++.+.+.|+..+++...... .+++.+ .++++++.+.+++. +..+.++. |..+ .+..|.+.|++.+++
T Consensus 68 ~~~~~~~~~~g~~~~~l~~~g~~-~~~~~~----~~~~~~i~~~~~~~--~i~~~~~~-g~~~~e~l~~Lk~aG~~~v~i 139 (296)
T TIGR00433 68 LEEARKAKAAGATRFCLVASGRG-PKDREF----MEYVEAMVQIVEEM--GLKTCATL-GLLDPEQAKRLKDAGLDYYNH 139 (296)
T ss_pred HHHHHHHHHCCCCEEEEEEecCC-CChHHH----HHHHHHHHHHHHhC--CCeEEecC-CCCCHHHHHHHHHcCCCEEEE
Confidence 33444455678887765443332 334444 45677777777664 45555544 6554 478999999998755
Q ss_pred C
Q 016596 307 D 307 (386)
Q Consensus 307 d 307 (386)
.
T Consensus 140 ~ 140 (296)
T TIGR00433 140 N 140 (296)
T ss_pred c
Confidence 3
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=6.4 Score=40.38 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++--+++++.+.++|++.|=++-+. .|++.|+- .+++.+. .....+..++......++...++|++.+
T Consensus 23 ~e~K~~ia~~L~~~Gv~~IE~G~p~---~~~~d~e~-----v~~i~~~----~~~~~i~a~~r~~~~di~~a~~~g~~~v 90 (488)
T PRK09389 23 PEEKLEIARKLDELGVDVIEAGSAI---TSEGEREA-----IKAVTDE----GLNAEICSFARAVKVDIDAALECDVDSV 90 (488)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCc---CCHHHHHH-----HHHHHhc----CCCcEEEeecccCHHHHHHHHhCCcCEE
Confidence 4455677788889999988765443 36666543 2333332 1123333444333234777888888877
Q ss_pred EcC
Q 016596 305 SLD 307 (386)
Q Consensus 305 ~~d 307 (386)
++.
T Consensus 91 ~i~ 93 (488)
T PRK09389 91 HLV 93 (488)
T ss_pred EEE
Confidence 653
|
|
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.1 Score=41.71 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE-ecCCcc--h
Q 016596 217 LHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY-ASGSGG--L 292 (386)
Q Consensus 217 v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H-~cG~~~--~ 292 (386)
...+|+++.....+.+..+..+||.-|++-+|.-.+ +..+.- ..+++....+.+...+..+++- .-|+.. .
T Consensus 178 ~lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l-----~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a 252 (765)
T KOG2263|consen 178 LLSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKL-----QAFKGAYAELESTLSGLNVLLATYFADVPAEA 252 (765)
T ss_pred hHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHH-----HHHHHHHHHHHhhccccceeehhhhccCCHHH
Confidence 357899999999999999999999999987776432 332222 2233333444322112233332 335554 3
Q ss_pred HHHHHhcC-CCEEEcCCC---CCHHHHHHHhCCC-eeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Q 016596 293 LERLALTG-VDVVSLDWT---VDMAEGRRRLGPD-VAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK 366 (386)
Q Consensus 293 l~~l~e~g-~d~l~~d~~---~dl~e~~~~~g~~-~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~ 366 (386)
++.+..++ +.++++|-. -.+..++..+|.+ +.+.|-||-..+ ..+-..-..-+.+++...|..+.+++++|++.
T Consensus 253 ~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvvVstS~SlL 332 (765)
T KOG2263|consen 253 YKTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKDKVVVSTSCSLL 332 (765)
T ss_pred HHHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccceEEEeechhhh
Confidence 67787775 888887743 3677788888854 666777787655 44444445566777888887799999999974
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=91.18 E-value=5.9 Score=36.19 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE-ecCCcc--h-HHHHHhc
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY-ASGSGG--L-LERLALT 299 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H-~cG~~~--~-l~~l~e~ 299 (386)
-++..+++++.+.++|.+.|-++ -.+.+++.++ ..+++.+.... ..+..+ .|+... . ++.+.+.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~-----~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVG---FPFASEDDFE-----QVRRLREALPN----ARLQALCRANEEDIERAVEAAKEA 79 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEE---HCTSSHHHHH-----HHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc---ccccCHHHHH-----Hhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhc
Confidence 35566777888889999998775 3356776654 34566666654 233333 343322 2 4555679
Q ss_pred CCCEEEcCC-CCC--------------HHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 300 GVDVVSLDW-TVD--------------MAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 300 g~d~l~~d~-~~d--------------l~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
|++.+.+-. ..| +..+ .+..|.++. +..... ..+++++.+.++++.+...+ .+
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~----~~~~~~~~~~~~~~~~~~~~~~~~g~~-~i 154 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA----FGCEDASRTDPEELLELAEALAEAGAD-II 154 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE----EEETTTGGSSHHHHHHHHHHHHHHT-S-EE
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE----eCccccccccHHHHHHHHHHHHHcCCe-EE
Confidence 999886532 222 2222 223444332 222222 67899999888888776423 34
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.|. +...-..|+.+..+++++++
T Consensus 155 ~l~---Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 155 YLA---DTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp EEE---ETTS-S-HHHHHHHHHHHHH
T ss_pred Eee---CccCCcCHHHHHHHHHHHHH
Confidence 442 22233457778888887775
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=91.17 E-value=12 Score=34.93 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=85.9
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec------CCcc--hH----HHHHh
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS------GSGG--LL----ERLAL 298 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c------G~~~--~l----~~l~e 298 (386)
.++..++.|++.+.+-+..++ ...+ +++ ...+++.+.++++ |.|++++.. |... .+ ....+
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~---~~~~-~~~-~~~~~i~~~~~~~--g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGS---DTEW-EQI-RDLGMIAEICDDW--GVPLLAMMYPRGPHIDDRDPELVAHAARLGAE 167 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCC---chHH-HHH-HHHHHHHHHHHHc--CCCEEEEEeccCcccccccHHHHHHHHHHHHH
Confidence 345577899999988776543 1222 233 4678888888876 567766321 2211 12 23346
Q ss_pred cCCCEEEcCCCCCHHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHH
Q 016596 299 TGVDVVSLDWTVDMAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENV 374 (386)
Q Consensus 299 ~g~d~l~~d~~~dl~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni 374 (386)
.|+|.+-.....+++.+++.. +-.+...||+.. .|.++..+.+.++++.+.. |..+ |-.+ ..+-|.+.+
T Consensus 168 ~GADyikt~~~~~~~~l~~~~~~~~iPVva~GGi~~----~~~~~~~~~i~~~~~aGa~-Gia~--g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 168 LGADIVKTPYTGDIDSFRDVVKGCPAPVVVAGGPKT----NSDREFLQMIKDAMEAGAA-GVAV--GRNIFQHDDPVGIT 240 (258)
T ss_pred HCCCEEeccCCCCHHHHHHHHHhCCCcEEEecCCCC----CCHHHHHHHHHHHHHcCCc-EEeh--hhHhhcCCCHHHHH
Confidence 899999777666666665544 344666788753 4678888888888887544 3333 3333 234477777
Q ss_pred HHHHHHHHh
Q 016596 375 AHFFEVAKA 383 (386)
Q Consensus 375 ~a~~~a~~~ 383 (386)
+++.+.+++
T Consensus 241 ~~l~~~i~~ 249 (258)
T TIGR01949 241 KAVCKIVHE 249 (258)
T ss_pred HHHHHHHhC
Confidence 777776653
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.5 Score=41.02 Aligned_cols=134 Identities=17% Similarity=0.281 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CEEEEecC-CcCCCC----HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-
Q 016596 218 HALLRKFTTSMAKYVQYQADNGA--QAVQIFDS-WATELS----PVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS- 289 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G~--d~i~i~d~-~~~~iS----p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~- 289 (386)
.++.+.+.++....++++.++|+ +.|+|+.- ..+|+- +..|..+ .-.++.-++++++..+++++++|+.+-
T Consensus 102 ~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~-a~ll~ag~~AVr~~~p~~kV~lH~~~~~ 180 (332)
T PF07745_consen 102 DQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNL-AKLLNAGIKAVREVDPNIKVMLHLANGG 180 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHH-HHHHHHHHHHHHTHSSTSEEEEEES-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHH-HHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 45667788888888889999885 66787743 233444 4555543 346677778888887788999998643
Q ss_pred -c---c-hHHHHHhcC--CCEEEcCCC-----------CCHHHHHHHhCCCeeEE--e------------cCCcC---c-
Q 016596 290 -G---G-LLERLALTG--VDVVSLDWT-----------VDMAEGRRRLGPDVAVQ--G------------NVDPG---A- 333 (386)
Q Consensus 290 -~---~-~l~~l~e~g--~d~l~~d~~-----------~dl~e~~~~~g~~~~l~--G------------~vd~~---~- 333 (386)
. . +++.+...| .|++.+... ..+..+.+++++++.|. | |+-+. .
T Consensus 181 ~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~ 260 (332)
T PF07745_consen 181 DNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLIS 260 (332)
T ss_dssp SHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGT
T ss_pred chHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccC
Confidence 2 2 368888766 567765322 14567788898766552 2 11100 0
Q ss_pred -cCCCHHHHHHHHHHHHHHc
Q 016596 334 -LFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 334 -l~gt~eev~~~v~~~i~~~ 352 (386)
..-||+--++.++++++..
T Consensus 261 ~yp~t~~GQ~~~l~~l~~~v 280 (332)
T PF07745_consen 261 GYPATPQGQADFLRDLINAV 280 (332)
T ss_dssp TS-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 0237887777777777654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.5 Score=41.65 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+.+.+.++.+.++|+|.|.+.|+.+ .++|....++ +..+++..++.++-+|++.+... + ..+ .+.|+
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIG-VGTPGQVRAV--------LEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccC-ccCHHHHHHH--------HHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 3445566677889999999888766 5778776654 33444333346889999988763 3 444 46799
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
+.++.
T Consensus 226 ~~id~ 230 (287)
T PRK05692 226 TVFDA 230 (287)
T ss_pred CEEEE
Confidence 98853
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.1 Score=41.71 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCC----cCCCCHHH---HHHhh------HHHHHHHHHHHHhhCCCCcEEEE
Q 016596 219 ALLRKFTTSMAKYVQYQADNGAQAVQIFDSW----ATELSPVD---FEEFS------LPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
+-++.+.+...+.++...++|.|+|.+.-.- ..|+||.. =++|. .-+..++++++++.-+.-++.+-
T Consensus 145 ~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vR 224 (338)
T cd02933 145 EEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIR 224 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEE
Confidence 3355666666677778889999999886432 23788722 11222 35667888888875322156766
Q ss_pred ecCC----------c-c----hHHHHHhcCCCEEEcCCC----------C-CHHHHHHHhCCCeeEEecC
Q 016596 286 ASGS----------G-G----LLERLALTGVDVVSLDWT----------V-DMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 286 ~cG~----------~-~----~l~~l~e~g~d~l~~d~~----------~-dl~e~~~~~g~~~~l~G~v 329 (386)
+.+. . . +...+.+.|+|.+++... . ...++|+.++-.+...|++
T Consensus 225 is~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i 294 (338)
T cd02933 225 LSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY 294 (338)
T ss_pred ECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC
Confidence 6432 1 1 235666789999987321 1 1356677776556666766
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=90.85 E-value=18 Score=35.71 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQAD 237 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e 237 (386)
+|+..+.+++++..++.|+..++++++.++.. . +++.++...+
T Consensus 179 ER~~~v~~av~~a~~~TG~~~~y~~nit~~~~---e----------------------------------~i~~a~~a~~ 221 (367)
T cd08205 179 ERVRACMEAVRRANEETGRKTLYAPNITGDPD---E----------------------------------LRRRADRAVE 221 (367)
T ss_pred HHHHHHHHHHHHHHHhhCCcceEEEEcCCCHH---H----------------------------------HHHHHHHHHH
Confidence 35677788899999998887777777765521 1 1233445667
Q ss_pred hCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-----------cc-hHHHHHh-cCCCEE
Q 016596 238 NGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-----------GG-LLERLAL-TGVDVV 304 (386)
Q Consensus 238 ~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-----------~~-~l~~l~e-~g~d~l 304 (386)
+|+|++++.-++.++-+.+ ++.+.. +.|+..|-.+. .. .+-.+.. .|+|++
T Consensus 222 ~Gad~vmv~~~~~g~~~~~-----------~l~~~~-----~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~ 285 (367)
T cd08205 222 AGANALLINPNLVGLDALR-----------ALAEDP-----DLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAV 285 (367)
T ss_pred cCCCEEEEecccccccHHH-----------HHHhcC-----CCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCcc
Confidence 8999998765554443322 222211 46777777661 11 2444444 689988
Q ss_pred EcCCC-----CCHHHHHHHhCCCeeEEecCCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCCCcHHH
Q 016596 305 SLDWT-----VDMAEGRRRLGPDVAVQGNVDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVGTPEEN 373 (386)
Q Consensus 305 ~~d~~-----~dl~e~~~~~g~~~~l~G~vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~tp~En 373 (386)
+..+. .+.++..+....-..=++++.+..- . .++ ..+.++++.++ ..+++..|-++ -|+-+.+.
T Consensus 286 ~~~~~~gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~----~~v~~l~~~~G-~dv~~~~GGgi~gHp~g~~ag 360 (367)
T cd08205 286 IFPGPGGRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHP----GRVPELYRDYG-PDVILLAGGGILGHPDGAAAG 360 (367)
T ss_pred ccCCCccCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCH----HHHHHHHHHhC-CcEEEEcCchhcCCCCChHHH
Confidence 65432 2333333322100011456666542 2 334 45566677775 45888888887 47788888
Q ss_pred HHHHHHH
Q 016596 374 VAHFFEV 380 (386)
Q Consensus 374 i~a~~~a 380 (386)
.+||.++
T Consensus 361 ~~a~r~a 367 (367)
T cd08205 361 VRAFRQA 367 (367)
T ss_pred HHHHhcC
Confidence 9888763
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=7.6 Score=37.36 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC------cc--hHHHHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS------GG--LLERLA 297 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~------~~--~l~~l~ 297 (386)
+-.+.|++.+.+.|...||. +++.|+..++..+-.+++++..+++. |..+++-+.+. +. .++.+.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFt-----sl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~ 88 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFT-----SLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQ 88 (360)
T ss_pred hhHHHHHHHHHHcCccceee-----ecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHH
Confidence 34567888899999888874 46778888889999999999999998 57888887764 33 378899
Q ss_pred hcCCCEEEcCCCCCHHHHHHHhCCCeeE
Q 016596 298 LTGVDVVSLDWTVDMAEGRRRLGPDVAV 325 (386)
Q Consensus 298 e~g~d~l~~d~~~dl~e~~~~~g~~~~l 325 (386)
+.|++++-+|...+.++..+.....+.+
T Consensus 89 e~G~~glRlD~gfS~eei~~ms~~~lki 116 (360)
T COG3589 89 ELGVDGLRLDYGFSGEEIAEMSKNPLKI 116 (360)
T ss_pred HhhhhheeecccCCHHHHHHHhcCCeEE
Confidence 9999999999988888887765442333
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=9 Score=36.38 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=47.8
Q ss_pred HHHHHHHHH-hCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-h---HHHHHhcC
Q 016596 229 AKYVQYQAD-NGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-L---LERLALTG 300 (386)
Q Consensus 229 ~~~~~~~~e-~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~---l~~l~e~g 300 (386)
.++++.+++ .|+++|++..+.+. .||.+..++++ +..++.+.+ .++++.++..+ +. - .....+.|
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~----~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~~~G 99 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVL----EIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYATELG 99 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHH----HHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHHHcC
Confidence 344556777 99999998877764 79998887763 344555543 46888888543 32 2 25556789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 100 ad~v~v 105 (293)
T PRK04147 100 YDAISA 105 (293)
T ss_pred CCEEEE
Confidence 998754
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=10 Score=36.18 Aligned_cols=91 Identities=24% Similarity=0.334 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHH-hcCCCEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLA-LTGVDVV 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~-e~g~d~l 304 (386)
+.++...++|+|++.+.-|+....|+ +-+.-|++++.+.. +.|++++.+.... .+..+. +.+ +++
T Consensus 92 ~~~~~a~~~Gadav~~~pP~y~~~~~----~~i~~~f~~va~~~-----~lpi~lYn~~g~~l~~~~l~~L~~~~p-ni~ 161 (303)
T PRK03620 92 EYAQAAERAGADGILLLPPYLTEAPQ----EGLAAHVEAVCKST-----DLGVIVYNRDNAVLTADTLARLAERCP-NLV 161 (303)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEcCCCCCCCHHHHHHHHhhCC-CEE
Confidence 45556678899999887776444454 44556777887765 3576665544322 245555 554 566
Q ss_pred Ec-CCCCCHHH---HHHHhCCCeeEEecCC
Q 016596 305 SL-DWTVDMAE---GRRRLGPDVAVQGNVD 330 (386)
Q Consensus 305 ~~-d~~~dl~e---~~~~~g~~~~l~G~vd 330 (386)
.+ +...|+.. +.+.++++..++.|.|
T Consensus 162 giK~s~~d~~~~~~~~~~~~~~f~vl~G~d 191 (303)
T PRK03620 162 GFKDGVGDIELMQRIVRALGDRLLYLGGLP 191 (303)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEEeCCC
Confidence 55 34456654 4445566666665553
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=90.53 E-value=12 Score=35.55 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhC-CCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHh
Q 016596 227 SMAKYVQYQADNG-AQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLAL 298 (386)
Q Consensus 227 ~~~~~~~~~~e~G-~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e 298 (386)
.+.++++.+++.| +++|++..+.+. .+|.+..++++ +..++...+ .+|++.|+.+..+ -+ ....+
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIF----RIAKDEAKD---QIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHH----HHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHH
Confidence 3445556678899 999998877764 78999888864 344444433 4688888754432 13 44467
Q ss_pred cCCCEEEc
Q 016596 299 TGVDVVSL 306 (386)
Q Consensus 299 ~g~d~l~~ 306 (386)
+|+|++.+
T Consensus 95 ~Gad~v~v 102 (290)
T TIGR00683 95 LGYDCLSA 102 (290)
T ss_pred hCCCEEEE
Confidence 88887754
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=90.17 E-value=6.2 Score=37.89 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=61.6
Q ss_pred hCHHHHHHHHHHHHHH---------------HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhh
Q 016596 212 SQPKVLHALLRKFTTS---------------MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQT 276 (386)
Q Consensus 212 ~~Pe~v~~ll~~~~~~---------------~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~ 276 (386)
..||.+.+.++.+... ..+.++.+++.|++.|.+. . + .| .++++.+|+.
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~--~-g--~p-----------~~~i~~lk~~ 108 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG--A-G--NP-----------GKYIPRLKEN 108 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc--C-C--Cc-----------HHHHHHHHHc
Confidence 3566666666655431 1345566678899987652 1 1 22 1467777876
Q ss_pred CCCCcEEEEecCCcchHHHHHhcCCCEEEcCC-----C----CC---HHHHHHHhCCCeeEEecCC
Q 016596 277 HPDLSLILYASGSGGLLERLALTGVDVVSLDW-----T----VD---MAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 277 ~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~-----~----~d---l~e~~~~~g~~~~l~G~vd 330 (386)
|+. +++.+++........+.|+|++.+.. . .+ +.++++.++-.+...|||.
T Consensus 109 --g~~-v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~ 171 (307)
T TIGR03151 109 --GVK-VIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA 171 (307)
T ss_pred --CCE-EEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC
Confidence 454 56888887666778889999886521 1 13 3455555554566778874
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.1 Score=43.36 Aligned_cols=73 Identities=23% Similarity=0.298 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--Hhc
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALT 299 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~ 299 (386)
-.++..+.++.+.++|++.|.+.|..| ++.|....++ +.++++.. ++++-+|++.+... + ..+ .+.
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG-~l~P~~v~~L--------v~alk~~~-~~pi~~H~Hnt~GlA~An~laAieA 230 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAG-ILTPKAAKEL--------VSGIKAMT-NLPLIVHTHATSGISQMTYLAAVEA 230 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHHH--------HHHHHhcc-CCeEEEEeCCCCccHHHHHHHHHHc
Confidence 345566677778899999999877654 6888775554 44444432 57899999987653 2 333 478
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|++.++.
T Consensus 231 Gad~vD~ 237 (468)
T PRK12581 231 GADRIDT 237 (468)
T ss_pred CCCEEEe
Confidence 9998853
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=2 Score=43.64 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
++.++.++.+.++|+|.|.+.|..| ++.|....+ ++..+++.. ++|+-+|++.+... ...+ .+.|+
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAG-LLTPKRAYE--------LVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccC-CcCHHHHHH--------HHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 4455666678889999999877665 577876554 455555544 47899999987653 3444 47899
Q ss_pred CEEEcC-----C---CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH
Q 016596 302 DVVSLD-----W---TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK 351 (386)
Q Consensus 302 d~l~~d-----~---~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~ 351 (386)
++++.. . ..+++++...+.. .++++..=...-.++.++++++-+.
T Consensus 223 d~vD~sv~~~g~gagN~atE~lv~~L~~-----~g~~tgiDl~~L~~~~~~~~~vr~~ 275 (467)
T PRK14041 223 DMFDTAISPFSMGTSQPPFESMYYAFRE-----NGKETDFDRKALKFLVEYFTKVREK 275 (467)
T ss_pred CEEEeeccccCCCCCChhHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 988531 1 2456666655532 1344421022233445555554443
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=90.07 E-value=14 Score=35.02 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHHHh-CCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-cc-hH---HHHHhc
Q 016596 228 MAKYVQYQADN-GAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-GG-LL---ERLALT 299 (386)
Q Consensus 228 ~~~~~~~~~e~-G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~~-~l---~~l~e~ 299 (386)
+.++++.+++. |++++++..+.+. .+|.+..++++ +..++...+ .++++.++.+. +. .+ ....+.
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~----~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIA----EIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 34455567778 9999998877764 78988887764 344444432 46888887543 32 22 455678
Q ss_pred CCCEEEc
Q 016596 300 GVDVVSL 306 (386)
Q Consensus 300 g~d~l~~ 306 (386)
|+|++.+
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9987743
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=15 Score=37.39 Aligned_cols=202 Identities=17% Similarity=0.113 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhCCceeEE--eecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHH---HHHHHHHH----HHHHHHHHHHH
Q 016596 164 GKALTILREEVNNEAAVL--GFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPK---VLHALLRK----FTTSMAKYVQY 234 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~--~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe---~v~~ll~~----~~~~~~~~~~~ 234 (386)
++...+|...+++++.++ .++..|-++.. +..+ .+.+. +=..+++.|+ .+++++.. |.=...+-++.
T Consensus 197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~-~~~~--~davL-iG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~ 272 (454)
T PRK09427 197 LNRTRELAPLIPADVIVISESGIYTHAQVRE-LSPF--ANGFL-IGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKA 272 (454)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHH-HHhc--CCEEE-ECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHH
Confidence 455566667776665544 35667765443 3331 11121 1124444443 34444322 33333455677
Q ss_pred HHHhCCCEEEE-ec-CCcCCCCHHHHHHhhH------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHh
Q 016596 235 QADNGAQAVQI-FD-SWATELSPVDFEEFSL------------PYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLAL 298 (386)
Q Consensus 235 ~~e~G~d~i~i-~d-~~~~~iSp~~f~ef~~------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e 298 (386)
..++|+|.+-+ +. .+.-.+++++.++... +....+.+.+++.+ +-++..+|+.. .+..+.+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~---lD~vQLHG~e~~~~~~~l~~ 349 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLS---LAAVQLHGDEDQAYIDALRE 349 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcC---CCEEEeCCCCCHHHHHHHHh
Confidence 78899998743 43 3445899999987763 33345556666542 34677788754 3455543
Q ss_pred c---C--------------------CCEEEcCC-------CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHH
Q 016596 299 T---G--------------------VDVVSLDW-------TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDT 348 (386)
Q Consensus 299 ~---g--------------------~d~l~~d~-------~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~ 348 (386)
. + +|.+-+|. ..|...+.......+.|.||+ +||.|.+..
T Consensus 350 ~~~~~~~iikai~v~~~~~~~~~~~~d~~LlDs~~GGtG~~~DW~~l~~~~~~p~iLAGGL-------~peNV~~ai--- 419 (454)
T PRK09427 350 ALPKTCQIWKAISVGDTLPARDLQHVDRYLLDNGQGGTGQTFDWSLLPGQSLDNVLLAGGL-------NPDNCQQAA--- 419 (454)
T ss_pred hcCCCCeEEEEeecCchhhhhhhcCCCEEEEcCCCCCCCCccChHHhhhcccCCEEEECCC-------CHHHHHHHH---
Confidence 1 1 22222221 013333322222234555555 456666653
Q ss_pred HHHcCCCCeEEecCCCCCCC-CcHHHHHHHHHHHHhh
Q 016596 349 VRKAGRWKHILNLGHGIKVG-TPEENVAHFFEVAKAI 384 (386)
Q Consensus 349 i~~~~~~g~Ils~gc~i~~~-tp~Eni~a~~~a~~~y 384 (386)
..+..|.=+++|-+..|+ -.++.+++++++++.|
T Consensus 420 --~~~P~gVDVsSGVE~~pG~KD~~Ki~~Fi~~vr~~ 454 (454)
T PRK09427 420 --QLGCAGLDFNSGVESAPGIKDAQKLASVFQTLRAY 454 (454)
T ss_pred --hcCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhhC
Confidence 234457778888887655 5899999999999976
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.9 Score=43.67 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
+..+.++.+.++|+|.|.+.|..| ++.|....+ ++.++++.. +.|+-+|++-+... + ..+ .+.|++
T Consensus 155 ~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad 224 (448)
T PRK12331 155 YFVKLAKEMQEMGADSICIKDMAG-ILTPYVAYE--------LVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGAD 224 (448)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCC
Confidence 345566667789999999877655 678877554 555666554 47899999887653 3 444 478999
Q ss_pred EEEcC-----C---CCCHHHHHHHhC
Q 016596 303 VVSLD-----W---TVDMAEGRRRLG 320 (386)
Q Consensus 303 ~l~~d-----~---~~dl~e~~~~~g 320 (386)
+++.. . ..+++++...+.
T Consensus 225 ~vD~sv~glg~gaGN~~tE~lv~~L~ 250 (448)
T PRK12331 225 IIDTAISPFAGGTSQPATESMVAALQ 250 (448)
T ss_pred EEEeeccccCCCcCCHhHHHHHHHHH
Confidence 88542 1 135566555553
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.98 E-value=15 Score=33.63 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~ 294 (386)
++.+.|...+-++++.+.|+|++.+-. |+..-++|+. .-++-.+++.+.+.- ++|+-+-.--|.. -+.
T Consensus 29 ~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~t-----vaaMa~iv~~v~r~v-~iPvGvNVLrNd~vaA~~ 102 (263)
T COG0434 29 LEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPET-----VAAMAVIVREVVREV-SIPVGVNVLRNDAVAALA 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHH-----HHHHHHHHHHHHHhc-cccceeeeeccccHHHHH
Confidence 555666677778889999999988632 2323444443 334556666665542 5777666554433 244
Q ss_pred HHHhcCCCEEEc---------CCC------CCHHHHHHHhCCCeeEEecCCcCc-c-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 295 RLALTGVDVVSL---------DWT------VDMAEGRRRLGPDVAVQGNVDPGA-L-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 295 ~l~e~g~d~l~~---------d~~------~dl~e~~~~~g~~~~l~G~vd~~~-l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
.-...|.+-+-+ |+. -.+.+.+.+++.++-+.-+++..- . .+++ .+.+.++.+++.+...+.
T Consensus 103 IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~v~dtver~~aDaV 181 (263)
T COG0434 103 IAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEAVKDTVERGLADAV 181 (263)
T ss_pred HHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCc-CHHHHHHHHHHccCCCEE
Confidence 444557665532 111 134566788998899999998863 3 4544 778888888888775566
Q ss_pred EEecCCCCCCCCcHHHHHHHHHH
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEV 380 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a 380 (386)
|++ |...-..+.+|.++..-++
T Consensus 182 I~t-G~~TG~~~d~~el~~a~~~ 203 (263)
T COG0434 182 IVT-GSRTGSPPDLEELKLAKEA 203 (263)
T ss_pred EEe-cccCCCCCCHHHHHHHHhc
Confidence 665 4444444455555544443
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=89.78 E-value=16 Score=34.25 Aligned_cols=137 Identities=13% Similarity=0.067 Sum_probs=84.8
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEE-EecCCcc-h-HH-------HHHhcCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL-YASGSGG-L-LE-------RLALTGV 301 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~-H~cG~~~-~-l~-------~l~e~g~ 301 (386)
++..++.|||++.+.--++ |+ +|.-..-.+-++.+.++++ |.|++. +--|... . .+ .-.|+|+
T Consensus 100 VeeAvrlGAdAV~~~v~~G---s~--~E~~~l~~l~~v~~ea~~~--G~Plla~~prG~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIG---SE--YEHQSIKNIIQLVDAGLRY--GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCCCCEEEEEEecC---CH--HHHHHHHHHHHHHHHHHHh--CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcC
Confidence 3447789999987755555 32 3333444577899999997 678766 4445321 1 12 2248899
Q ss_pred CEEEcCCCC-CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-CCCcHHHHHHHHH
Q 016596 302 DVVSLDWTV-DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIK-VGTPEENVAHFFE 379 (386)
Q Consensus 302 d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~-~~tp~Eni~a~~~ 379 (386)
|++-..+.. +++++.+..+-.+.+.||= ..|.+|+-+.+++.++.++ .|.. .|=++- .+-|.+-++|+..
T Consensus 173 DiVK~~y~~~~f~~vv~a~~vPVviaGG~-----k~~~~~~L~~v~~ai~aGa-~Gv~--~GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 173 QIIKTYYVEEGFERITAGCPVPIVIAGGK-----KLPERDALEMCYQAIDEGA-SGVD--MGRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred CEEecCCCHHHHHHHHHcCCCcEEEeCCC-----CCCHHHHHHHHHHHHHcCC-ceee--echhhhccCCHHHHHHHHHH
Confidence 999877653 4566666444445556653 2367889999999999553 3333 355553 3456666666665
Q ss_pred HHHh
Q 016596 380 VAKA 383 (386)
Q Consensus 380 a~~~ 383 (386)
.+|+
T Consensus 245 IVh~ 248 (264)
T PRK08227 245 VVHE 248 (264)
T ss_pred HHhC
Confidence 5553
|
|
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=9 Score=36.92 Aligned_cols=152 Identities=17% Similarity=0.252 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 214 PKVLHALLRKFTTSMAKYVQYQA-DNGAQAVQIFDSWAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 214 Pe~v~~ll~~~~~~~~~~~~~~~-e~G~d~i~i~d~~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
|+.+++-++.+.+--.++++.+. +.|+|.|.+...+++ --+++.|.+ ..+++.+.+ +.|+++-+||
T Consensus 63 ~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~----~Vk~V~eav-----d~PL~Id~s~ 133 (319)
T PRK04452 63 PEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAK----TVEEVLQAV-----DVPLIIGGSG 133 (319)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHH----HHHHHHHhC-----CCCEEEecCC
Confidence 44666666666555577788887 799999998743332 234554444 333444443 5798899999
Q ss_pred Cc----chHHHHHh-cC-CC-EEE-cC--CCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC--CCC
Q 016596 289 SG----GLLERLAL-TG-VD-VVS-LD--WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWK 356 (386)
Q Consensus 289 ~~----~~l~~l~e-~g-~d-~l~-~d--~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~--~~g 356 (386)
|. ..++.-++ ++ -. +++ .. ..-.+..+.+.+|..+...+-.| . ++.++.-+.+...| ...
T Consensus 134 n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~D-------l-n~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 134 NPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD-------I-NLAKQLNILLTELGVPRER 205 (319)
T ss_pred CCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH-------H-HHHHHHHHHHHHcCCCHHH
Confidence 63 34554444 32 22 443 22 22245666777776444443222 1 23333334444555 367
Q ss_pred eEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 357 HILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 357 ~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.++-|+.. +-++..|.....++++|.
T Consensus 206 IviDP~~~-~lg~g~e~~~~~~e~IR~ 231 (319)
T PRK04452 206 IVMDPTTG-ALGYGIEYSYSVMERIRL 231 (319)
T ss_pred EEEeCCcc-cccCCHHHHHHHHHHHHH
Confidence 89998863 456666666666666554
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.62 E-value=3 Score=39.52 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
++.++++.+.++|++.|.++|+.+ .++|....+ +++.+++..++.++-+|++-+... + ..+ .+.|++
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~--------l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~ 218 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLG-ILSPFETYT--------YISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK 218 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC-CCCHHHHHH--------HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 445556667788999999988776 577776544 344444433456888999988753 3 333 467998
Q ss_pred EEE
Q 016596 303 VVS 305 (386)
Q Consensus 303 ~l~ 305 (386)
.++
T Consensus 219 ~vd 221 (280)
T cd07945 219 GLH 221 (280)
T ss_pred EEE
Confidence 875
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=89.60 E-value=18 Score=34.42 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .||.+...+++. ..++.+.+ .+|++.|..++.+ -+ ....+.|+|
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~----~~~~~~~g---~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIE----NAIDQIAG---RIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHH----HHHHHhCC---CCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 4455567899999998877764 788888777654 34444442 4788888887653 23 445678999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 98 ~v~v 101 (294)
T TIGR02313 98 AAMV 101 (294)
T ss_pred EEEE
Confidence 8754
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.4 Score=39.99 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.++++.+.+.|++.|.+.|+.+ .+.|..+.+++ ..+++..++.++.+|++.+..+ + ..+ .+.|+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 219 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIG-VATPAQVRRLL--------EAVLERFPDEKLALHFHDTRGQALANILAALEAGV 219 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-ccCHHHHHHHH--------HHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 3444555666778999999888776 47787766653 3444433357899999988753 3 333 46798
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.++
T Consensus 220 ~~id 223 (274)
T cd07938 220 RRFD 223 (274)
T ss_pred CEEE
Confidence 8875
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK06438 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=3.5 Score=39.00 Aligned_cols=157 Identities=9% Similarity=0.084 Sum_probs=95.7
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHH
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVD 257 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~ 257 (386)
..+-+.+.||+|++-.-.. + -|.+++ ++++.+++++.+.++++- ++.+++.+++- +++..
T Consensus 126 ~~lkavLPGPyT~a~lS~n----e--------~Y~d~~---e~~~aia~~l~~e~~al~---v~~v~l~EPsl--~~~~~ 185 (292)
T PRK06438 126 KGISIFLPSPYSFYKMSKT----L--------EKIDYN---DFYKKLVNIYSRILDIFS---IKNVVLLDVFY--YKNDN 185 (292)
T ss_pred CCceEEecCchhHHHhhcc----c--------ccCCHH---HHHHHHHHHHHHHHHhCC---cceEEEecchh--cCCCc
Confidence 3456678899998755432 1 244544 667777777777666544 88899888652 12111
Q ss_pred HHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCcc-
Q 016596 258 FEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGAL- 334 (386)
Q Consensus 258 f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l- 334 (386)
....+.+.+ +..+++|+-+... .++.+. +++|.+ + ....+..+.+..+ . .-.|-+|....
T Consensus 186 ---------~~~~e~~~e---~~~v~l~TYf~~~~~~~~~L~-~~vd~i-v-~~~~l~~v~ey~~-~-v~lGivdarnTk 248 (292)
T PRK06438 186 ---------YSYLSDLAK---KYNVILITSGNVSKLNFNGLG-HKFESI-V-RDDEVDYIINKCS-Y-PGIKIFSGDNTK 248 (292)
T ss_pred ---------hhhhhhccc---cccEEEEEecCCchhhHHhhc-ccceeE-e-ccchhhhHHhhcC-C-ceeeeeecCccc
Confidence 111222211 1356778887765 378888 999998 4 4445666666633 3 55688888764
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CCCCcHHHHHHHH
Q 016596 335 FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KVGTPEENVAHFF 378 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~~tp~Eni~a~~ 378 (386)
..++|+ ++.+ -+-...++++.+.+ |...-.+.++++-
T Consensus 249 mE~~e~-~~~i------~~~~~v~vt~nt~ldfLP~~~a~~Kl~lL~ 288 (292)
T PRK06438 249 MEDLKA-RKEI------SGYDNVLLTHSDYMDFLPREIADIKVELLG 288 (292)
T ss_pred ccCHHH-hhhc------cCcceEEEcCCchhhhccHHHHHHHHHHHH
Confidence 788888 7776 22457888888764 3334444444443
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=89.36 E-value=20 Score=34.77 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=80.0
Q ss_pred HHHHHHHH-hCCCEEEEecCCcC---C---------------CCHHHHHHhh-----------HHHHHHHHHHHHhhCCC
Q 016596 230 KYVQYQAD-NGAQAVQIFDSWAT---E---------------LSPVDFEEFS-----------LPYLKQIVDTVKQTHPD 279 (386)
Q Consensus 230 ~~~~~~~e-~G~d~i~i~d~~~~---~---------------iSp~~f~ef~-----------~P~~k~l~~~i~~~~~~ 279 (386)
+.++.+++ -.++.+.+.|+..+ + +|++.|++++ .+..+++++..+++ |
T Consensus 99 ~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~--g 176 (325)
T cd01306 99 PELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAALARAR--G 176 (325)
T ss_pred HHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHC--C
Confidence 33344444 35888888886542 3 5555555443 46778889999987 6
Q ss_pred CcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccC-CCHHHHHHHHHHHHHHcCCCCeE
Q 016596 280 LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALF-GSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 280 ~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~-gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.++..|.+.....++...+.|+.+.. ...+.+.++..-...+.+.-+. |..+. ++... ...++++++. |-..+
T Consensus 177 l~vasH~d~~~~~v~~a~~~Gv~~~E--~p~t~e~a~~a~~~G~~vv~ga-pn~lrg~s~~g-~~~~~~ll~~--Gv~~a 250 (325)
T cd01306 177 IPLASHDDDTPEHVAEAHELGVVISE--FPTTLEAAKAARELGLQTLMGA-PNVVRGGSHSG-NVSARELAAH--GLLDI 250 (325)
T ss_pred CcEEEecCCChHHHHHHHHCCCeecc--CCCCHHHHHHHHHCCCEEEecC-cccccCccccc-cHhHHHHHHC--CCeEE
Confidence 89889987655567888888988764 4456655555443333333233 33332 22111 1224455553 23467
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|++++. |...+.+++..+..
T Consensus 251 l~SD~~-----p~sll~~~~~la~~ 270 (325)
T cd01306 251 LSSDYV-----PASLLHAAFRLADL 270 (325)
T ss_pred EEcCCC-----cHhHHHHHHHHHHH
Confidence 888774 22344444444443
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.31 E-value=5.6 Score=38.11 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=91.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 209 LAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 209 ~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
+.+-|||.+.+.++++.++--+ |... -.|..+. | +..|++-+++++++++-+.--+.+.+.|
T Consensus 138 dy~Vd~eyLl~w~~kVa~~Kgk--------glEa--HlDGqGE---P-----~lYP~l~~lVqalk~~~~v~vVSmQTng 199 (414)
T COG2100 138 DYVVDPEYLLEWFEKVARFKGK--------GLEA--HLDGQGE---P-----LLYPHLVDLVQALKEHKGVEVVSMQTNG 199 (414)
T ss_pred ceEecHHHHHHHHHHHHhhhCC--------CeEE--EecCCCC---C-----ccchhHHHHHHHHhcCCCceEEEEeeCc
Confidence 4567899888888887764321 2221 1243332 2 4568999999999997422235566777
Q ss_pred Cc-c--hHHHHHhcCCCEEEcC-CCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 289 SG-G--LLERLALTGVDVVSLD-WTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 289 ~~-~--~l~~l~e~g~d~l~~d-~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
.. + .++.+.++|.|-+++. ...|.+.||...|-+ .-+.+.|.+-++-++. . +=..+++| -
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~------------dYdv~kvle~aE~i~~-a-~idvlIaP--v 263 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRK------------DYDVKKVLEVAEYIAN-A-GIDVLIAP--V 263 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCcc------------ccCHHHHHHHHHHHHh-C-CCCEEEee--e
Confidence 54 2 4699999999988764 347888888876532 1233444444333333 2 33566665 3
Q ss_pred CCCCCcHHHHHHHHHHHHhhc
Q 016596 365 IKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~yg 385 (386)
+.|+...+.+.++++.|++-|
T Consensus 264 ~lPG~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 264 WLPGVNDDEMPKIIEWAREIG 284 (414)
T ss_pred ecCCcChHHHHHHHHHHHHhC
Confidence 567888899999999998865
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.4 Score=38.79 Aligned_cols=69 Identities=25% Similarity=0.400 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVV 304 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l 304 (386)
.++++.+.++|++.|.+.|+.+. ++|....+ ++..+++..++.++-+|.+.+... + ..+ .+.|++.+
T Consensus 140 ~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~v~~--------lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i 210 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLADTVGI-MTPEDVAE--------LVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRI 210 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEETTS--S-HHHHHH--------HHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHcCCeEEEeeCccCC-cCHHHHHH--------HHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEE
Confidence 34455566779999999887764 67776544 455555554446899999988763 3 333 46899988
Q ss_pred Ec
Q 016596 305 SL 306 (386)
Q Consensus 305 ~~ 306 (386)
+.
T Consensus 211 d~ 212 (237)
T PF00682_consen 211 DG 212 (237)
T ss_dssp EE
T ss_pred Ec
Confidence 54
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=89.14 E-value=17 Score=32.81 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=86.4
Q ss_pred HHHHHHhCCCEEEEecCC----cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE-c
Q 016596 232 VQYQADNGAQAVQIFDSW----ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS-L 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~-~ 306 (386)
++.++++||++|-+.-.+ +..+|++.=.+.+.|.++.+.+... ++|+.+-+. +...++.-.+.|+++++ .
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~----~~plSIDT~-~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENP----DVPLSIDTF-NPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHT----TSEEEEEES-SHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCC----CeEEEEECC-CHHHHHHHHHcCcceEEec
Confidence 788999999999887432 3578887766777777777776221 466655542 22245666666999884 3
Q ss_pred CC---CCCHHHHHHHhCCCeeEEecCC-cCccCCC-------HHHHHHHHHHHHHH---cC--CCCeEEecCCCCCCCCc
Q 016596 307 DW---TVDMAEGRRRLGPDVAVQGNVD-PGALFGS-------KDFITNRINDTVRK---AG--RWKHILNLGHGIKVGTP 370 (386)
Q Consensus 307 d~---~~dl~e~~~~~g~~~~l~G~vd-~~~l~gt-------~eev~~~v~~~i~~---~~--~~g~Ils~gc~i~~~tp 370 (386)
.. ...+..+.++++-.+++|=.-. |..+..+ .+++.++.++-++. .| ....|+-||-+. ..++
T Consensus 100 ~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf-~~~~ 178 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF-GKDP 178 (210)
T ss_dssp TTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS-STTH
T ss_pred ccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc-CCCH
Confidence 32 3457777888887766654331 3333222 34444444443332 45 468999999776 4444
Q ss_pred HHHHHHHHHHHHh
Q 016596 371 EENVAHFFEVAKA 383 (386)
Q Consensus 371 ~Eni~a~~~a~~~ 383 (386)
..|+ .+++..+.
T Consensus 179 ~~~~-~~l~~i~~ 190 (210)
T PF00809_consen 179 EQNL-ELLRNIEE 190 (210)
T ss_dssp HHHH-HHHHTHHH
T ss_pred HHHH-HHHHHHHH
Confidence 4544 44444443
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.6 Score=44.13 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++..++++.+.++|++.|.|.|.. +++.|....++ +.++++.. +.|+-+|++.+... + ..+ .+.|+
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDta-G~l~P~~v~~l--------v~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGa 223 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMA-GLLTPTVTVEL--------YAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGC 223 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcc-cCCCHHHHHHH--------HHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCC
Confidence 445566677888999999987655 46888775554 44445443 47899999987652 2 333 57899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
++++.
T Consensus 224 d~iD~ 228 (596)
T PRK14042 224 NHIDT 228 (596)
T ss_pred CEEEe
Confidence 98853
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=88.80 E-value=17 Score=34.29 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|.-...++ +-+..|++++.+.. +.|++++.. |.. + .+..+.+.+
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~----~~l~~~~~~ia~~~-----~~pi~lYn~P~~~g~~ls~~~~~~L~~~p- 154 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQ----EGLYAHFKAIAEAT-----DLPVILYNVPGRTGVNIEPETVLRLAEHP- 154 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCH----HHHHHHHHHHHhcC-----CCCEEEEEChhHhCCCCCHHHHHHHhcCC-
Confidence 566667778899998876654322333 34567888888864 457777753 332 1 245555553
Q ss_pred CEEEc-CCCCCH---HHHHHHhCCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDM---AEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl---~e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+ .++.+.+++++.++.+-|.
T Consensus 155 ~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~ 188 (284)
T cd00950 155 NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA 188 (284)
T ss_pred CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH
Confidence 45444 222343 4455556666666665554
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.72 E-value=19 Score=33.68 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCcC--CCCHHHHH----HhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSWAT--ELSPVDFE----EFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---- 291 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~~~--~iSp~~f~----ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---- 291 (386)
+..++.++.+.+.|+|.+=++ ||.+. .|-...-+ .+-.+..-++++.+++.+.++|+++..+-|..
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 344566677889999987665 55542 11111111 22345566778888866557899999988752
Q ss_pred ---hHHHHHhcCCCEEEc-CCC----CCHHHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHcCCCCeEEec
Q 016596 292 ---LLERLALTGVDVVSL-DWT----VDMAEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKAGRWKHILNL 361 (386)
Q Consensus 292 ---~l~~l~e~g~d~l~~-d~~----~dl~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~~~~g~Ils~ 361 (386)
++....+.|+|.+-+ |-. .++.+..++. |+++..| -.|+++-. +++.+.. .|||---
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~--------gi~~I~lvaPtt~~~rl---~~i~~~a--~GFiY~v 177 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH--------GIDPIFLVAPTTPDERL---KKIAEAA--SGFIYYV 177 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc--------CCcEEEEeCCCCCHHHH---HHHHHhC--CCcEEEE
Confidence 234567889998744 422 2344444433 4666655 34454332 3333333 3555544
Q ss_pred CC-CC---CCCCcHHHHHHHHHHHHhh
Q 016596 362 GH-GI---KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 362 gc-~i---~~~tp~Eni~a~~~a~~~y 384 (386)
++ ++ ....... +..+++.+|+|
T Consensus 178 s~~GvTG~~~~~~~~-~~~~v~~vr~~ 203 (265)
T COG0159 178 SRMGVTGARNPVSAD-VKELVKRVRKY 203 (265)
T ss_pred ecccccCCCcccchh-HHHHHHHHHHh
Confidence 44 22 2222222 78888888876
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=21 Score=36.71 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCe-EEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 335 FGSKDFITNRINDTVRKAGRWKH-ILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~-Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
..|.+++.+.+.+.++.+...|+ .+..+|.-...+++|-+..+++++.++|
T Consensus 201 ~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 201 KKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC
Confidence 35667777777777666653333 3455665555667777777776666654
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=88.67 E-value=17 Score=34.28 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|+++|++..+.+. .+|.+..++.+ +..++.+.+ .+|++.++.++.+ -+ ....+.|
T Consensus 24 ~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 24 YDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGG---KIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred HHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHH----HHHHHHhCC---CCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 344555677899999998887764 79988887754 334444432 4788888876543 23 4456789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 97 adav~~ 102 (280)
T PLN02417 97 MHAALH 102 (280)
T ss_pred CCEEEE
Confidence 997754
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=8.5 Score=37.39 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=80.4
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec--CCc-c--h-----HHH------
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS--GSG-G--L-----LER------ 295 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c--G~~-~--~-----l~~------ 295 (386)
++..++.|||++.+.--++ |+ ++.-...-+.++++.+++. |.|++..+- |.. . . .+.
T Consensus 152 VedAlrLGAdAV~~tvy~G---s~--~E~~ml~~l~~i~~ea~~~--GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaR 224 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFG---SE--ESRRQIEEISEAFEEAHEL--GLATVLWSYLRNSAFKKDGDYHTAADLTGQANH 224 (348)
T ss_pred HHHHHHCCCCEEEEEEecC---CH--HHHHHHHHHHHHHHHHHHh--CCCEEEEecccCcccCCcccccccHHHHHHHHH
Confidence 4457789999987655455 32 2223344467899999997 689887543 431 0 0 122
Q ss_pred -HHhcCCCEEEcCCCCCHHHHHHH-------------------------hCCCeeEEecCCcCcc---CCCHHHHHHHHH
Q 016596 296 -LALTGVDVVSLDWTVDMAEGRRR-------------------------LGPDVAVQGNVDPGAL---FGSKDFITNRIN 346 (386)
Q Consensus 296 -l~e~g~d~l~~d~~~dl~e~~~~-------------------------~g~~~~l~G~vd~~~l---~gt~eev~~~v~ 346 (386)
-.++|+|++-+....|....++. .. -|+.|.++-..- ..+.+++-++++
T Consensus 225 iaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~--ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 225 LAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVA--NCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHH--hhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 24789999977665444333332 22 133444422111 236788999999
Q ss_pred HH---HHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 347 DT---VRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 347 ~~---i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
.+ ++.+ ..|.++ |=++-..-.+|.+ +|.+++.
T Consensus 303 ~a~~~i~aG-a~Gv~i--GRNIfQ~~~~ea~-~~~~~i~ 337 (348)
T PRK09250 303 TAVINKRAG-GMGLII--GRKAFQRPMAEGV-KLLNAIQ 337 (348)
T ss_pred HHHHhhhcC-Ccchhh--chhhhcCCcHHHH-HHHHHHH
Confidence 99 7743 335444 5666666677776 5555443
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=88.62 E-value=20 Score=34.70 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCC------c-CCCC---------HHHHHHh--hHHHHHHHHHHHHhhCCCCcEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSW------A-TELS---------PVDFEEF--SLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~------~-~~iS---------p~~f~ef--~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
+..++.+++..++|||.|=+= |.. . .+.+ -++|+++ -+..++++.+..++. |+. +
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~--Gi~-~ 92 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK--GIE-F 92 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh--CCc-E
Confidence 344555666778999986431 111 0 1111 1345444 356788999999987 444 2
Q ss_pred EEecCCcchHHHHHhcCCCEEEcCCC--CCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCC-CeE
Q 016596 284 LYASGSGGLLERLALTGVDVVSLDWT--VDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRW-KHI 358 (386)
Q Consensus 284 ~H~cG~~~~l~~l~e~g~d~l~~d~~--~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~-g~I 358 (386)
+=+.=+..-++.+.++|++++-+... .++.-+++. .|+-+.|.-| ..|.+||...|..+.+.+... .++
T Consensus 93 ~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStG------matl~Ei~~Av~~i~~~G~~~~~i~ 166 (329)
T TIGR03569 93 LSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTG------MATLEEIEAAVGVLRDAGTPDSNIT 166 (329)
T ss_pred EEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECC------CCCHHHHHHHHHHHHHcCCCcCcEE
Confidence 22222233578889999999976543 455544443 3433333222 368999999988886543221 366
Q ss_pred EecCCCCCCCCcH--HHHHHHHHHHHhhc
Q 016596 359 LNLGHGIKVGTPE--ENVAHFFEVAKAIR 385 (386)
Q Consensus 359 ls~gc~i~~~tp~--Eni~a~~~a~~~yg 385 (386)
|-- |.-...+|+ -|+++|-..-+.|+
T Consensus 167 llh-C~s~YP~~~~~~nL~~I~~Lk~~f~ 194 (329)
T TIGR03569 167 LLH-CTTEYPAPFEDVNLNAMDTLKEAFD 194 (329)
T ss_pred EEE-ECCCCCCCcccCCHHHHHHHHHHhC
Confidence 632 443223333 36666555444453
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.54 E-value=15 Score=34.19 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=86.2
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-----------hH---H-H
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-----------LL---E-R 295 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-----------~l---~-~ 295 (386)
..+..+..|+|++.+.--+++--+.++.+++ -++.+.++++ |.|+++++-.-.. .+ . .
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~-----~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRl 174 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENI-----SQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARL 174 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHH-----HHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHH
Confidence 3445668899998876667776667776664 5678888887 6898886643211 11 1 2
Q ss_pred HHhcCCCEEEcCCCCCHH---HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC-CCCcH
Q 016596 296 LALTGVDVVSLDWTVDMA---EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIK-VGTPE 371 (386)
Q Consensus 296 l~e~g~d~l~~d~~~dl~---e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~-~~tp~ 371 (386)
=.++|+|++-..+..|.+ ++-+-.|-.+.+.||=. .++.+++.+.++..|++++ .| +..|-.+- .+.|.
T Consensus 175 aaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k----~~~~~~~l~~~~~ai~aGa-~G--~~~GRNifQ~~~p~ 247 (265)
T COG1830 175 AAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPK----TETEREFLEMVTAAIEAGA-MG--VAVGRNIFQHEDPE 247 (265)
T ss_pred HHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCC----CCChHHHHHHHHHHHHccC-cc--hhhhhhhhccCChH
Confidence 247899999887765544 44444444455555431 2488999999999999864 23 33455554 34444
Q ss_pred HHHHHHHHHHH
Q 016596 372 ENVAHFFEVAK 382 (386)
Q Consensus 372 Eni~a~~~a~~ 382 (386)
.-++|+..-++
T Consensus 248 ~m~~Ai~~Ivh 258 (265)
T COG1830 248 AMVKAIQAIVH 258 (265)
T ss_pred HHHHHHHHHhc
Confidence 44444444433
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=88.43 E-value=22 Score=33.55 Aligned_cols=94 Identities=30% Similarity=0.458 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g 300 (386)
.++.++...++|+|++++.-|.-...|++. +.-|++.+.+.. +.|+++|.. |.. . .+..+.+.+
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~----l~~y~~~ia~~~-----~~pi~iYn~P~~tg~~ls~~~l~~L~~~~ 155 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIPPYYFKPSQEE----LIDYFRAIADAT-----DLPIIIYNNPARTGNDLSPETLARLAKIP 155 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTSSSCCHHH----HHHHHHHHHHHS-----SSEEEEEEBHHHHSSTSHHHHHHHHHTST
T ss_pred HHHHHHHHhhcCceEEEEeccccccchhhH----HHHHHHHHHhhc-----CCCEEEEECCCccccCCCHHHHHHHhcCC
Confidence 345556677899999998777665567665 444677777554 468888776 432 2 255666643
Q ss_pred CCEEEc-CCCCCH---HHHHHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDM---AEGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl---~e~~~~~g~~~~l~G~vd~ 331 (386)
++..+ +...|+ .++.+..++++.++.|-|.
T Consensus 156 -nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~ 189 (289)
T PF00701_consen 156 -NVVGIKDSSGDLERLIQLLRAVGPDFSVFCGDDE 189 (289)
T ss_dssp -TEEEEEESSSBHHHHHHHHHHSSTTSEEEESSGG
T ss_pred -cEEEEEcCchhHHHHHHHhhhcccCeeeeccccc
Confidence 55554 333444 4445566677776666553
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=88.43 E-value=3.3 Score=39.24 Aligned_cols=74 Identities=12% Similarity=0.268 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHh
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLAL 298 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e 298 (386)
+.+.++++.+++.|++++++..+.+. .+|.+..++++ +..++.++. .+|++.++.+..+ .+ ....+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELL----EIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHH----HHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhh
Confidence 33445566677899999999877764 79999887763 345555543 4788888766543 23 44567
Q ss_pred cCCCEEEc
Q 016596 299 TGVDVVSL 306 (386)
Q Consensus 299 ~g~d~l~~ 306 (386)
.|+|++.+
T Consensus 95 ~Gad~v~v 102 (289)
T PF00701_consen 95 AGADAVLV 102 (289)
T ss_dssp TT-SEEEE
T ss_pred cCceEEEE
Confidence 78886643
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=88.42 E-value=17 Score=37.39 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFE 259 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ 259 (386)
++--++.++.+.++|++.|=++-+. .|+..|+
T Consensus 22 ~e~K~~ia~~L~~~GV~~IEvG~p~---~s~~d~e 53 (494)
T TIGR00973 22 VEEKLQIALALERLGVDIIEAGFPV---SSPGDFE 53 (494)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCC---CCHHHHH
Confidence 4455677788889999988654333 4676664
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=88.35 E-value=14 Score=34.04 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcC-CCCHHHHHHhh---------HHHHHHHHHHHHhhCCCCcEEEEecCC------
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWAT-ELSPVDFEEFS---------LPYLKQIVDTVKQTHPDLSLILYASGS------ 289 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~---------~P~~k~l~~~i~~~~~~~~~~~H~cG~------ 289 (386)
+...++++.+.++|+|.+-+.-|... .++-..-++.. ....-++++.+++.. .+|+++-+--|
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhC
Confidence 44566777888999999887633322 22222222211 123344555555533 45654432323
Q ss_pred -cchHHHHHhcCCCEEEc
Q 016596 290 -GGLLERLALTGVDVVSL 306 (386)
Q Consensus 290 -~~~l~~l~e~g~d~l~~ 306 (386)
..+++.+++.|++.+.+
T Consensus 93 ~~~fi~~~~~aG~~giii 110 (242)
T cd04724 93 LERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 22578888999997765
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.34 E-value=24 Score=33.69 Aligned_cols=155 Identities=22% Similarity=0.239 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++..++..++.+|+++.+++.- |+-.+++++...+.|+|++.
T Consensus 61 ~v~~~~v~~~~grvpviaG~g~~~------------------------------------t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 61 EVLEAVVEAVGGRVPVIAGVGSNS------------------------------------TAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHCCCCcEEEecCCCc------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 345556677777788877665441 23334666778889999999
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc---ch-HHHHHhc--CCCEEEc-CCCCCHHHHHH
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG---GL-LERLALT--GVDVVSL-DWTVDMAEGRR 317 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~---~~-l~~l~e~--g~d~l~~-d~~~dl~e~~~ 317 (386)
+.-|.-.-.+ ++-..-|++++.++. + .|+++...-.. .+ .+.+.++ -.+++.+ +...|+..+.+
T Consensus 105 ~v~PyY~k~~----~~gl~~hf~~ia~a~-~----lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~ 175 (299)
T COG0329 105 VVPPYYNKPS----QEGLYAHFKAIAEAV-D----LPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEE 175 (299)
T ss_pred EeCCCCcCCC----hHHHHHHHHHHHHhc-C----CCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHHH
Confidence 8777654444 556677889999988 3 58888876432 12 3444433 3467777 55567776665
Q ss_pred H---hCCC-eeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 318 R---LGPD-VAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 318 ~---~g~~-~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
. .+++ ..+. .|..+.. ...+. .|+.|+|-+.+|-+ |+-...|+++++
T Consensus 176 ~~~~~~~~~f~v~--------~G~d~~~----~~~~~-~G~~G~is~~~N~~-----p~~~~~l~~~~~ 226 (299)
T COG0329 176 IIAALGDRDFIVL--------SGDDELA----LPALL-LGADGVISVTANVA-----PELAVELYRAAK 226 (299)
T ss_pred HHHhcCccCeeEE--------eCchHHH----HHHHh-CCCCeEEecccccC-----HHHHHHHHHHHH
Confidence 4 5552 2222 2332222 22333 45668887766544 444555655544
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.23 E-value=3.4 Score=38.59 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+.+.+.++.+.++|++.|.+.|+.+ .+.|+...++ +..+++..+..++-+|++-+..+ + ..+ .+.|+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa 211 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAG-AMLPDDVRER--------VRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGA 211 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CcCHHHHHHH--------HHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCC
Confidence 3345566667789999999888776 5778776554 44444443223789999988752 2 322 36799
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.++
T Consensus 212 ~~vd 215 (263)
T cd07943 212 TRID 215 (263)
T ss_pred CEEE
Confidence 8874
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=88.06 E-value=4 Score=39.88 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.++++.+.++|++.|.++|..+ ...|.+..+++. .+++..+..++-+|++.+..+ + ..+ .+.|+
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G-~a~P~~v~~lv~--------~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa 267 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIG-VGTPGTVVPMLE--------AVMAVVPVDKLAVHFHDTYGQALANILVSLQMGI 267 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcC-CcCHHHHHHHHH--------HHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 3455666778889999999988776 567777655443 333332234688999988763 3 444 46799
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.++
T Consensus 268 ~~vd 271 (347)
T PLN02746 268 STVD 271 (347)
T ss_pred CEEE
Confidence 8875
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=88.03 E-value=3 Score=40.83 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHhh------HHHHHHHHHHHHhhCC-----CCcE
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEFS------LPYLKQIVDTVKQTHP-----DLSL 282 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~-----~~~~ 282 (386)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. =.||. ..+..++++++++.-+ +.++
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 139 IEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 444555555566677789999998864322 3666622 11232 4566778888877532 4456
Q ss_pred EEEecCC-------c--c---hHHHHHhcCCCEEEcCCC--------C------CHHHHHHHhCC--CeeEEecCCcCcc
Q 016596 283 ILYASGS-------G--G---LLERLALTGVDVVSLDWT--------V------DMAEGRRRLGP--DVAVQGNVDPGAL 334 (386)
Q Consensus 283 ~~H~cG~-------~--~---~l~~l~e~g~d~l~~d~~--------~------dl~e~~~~~g~--~~~l~G~vd~~~l 334 (386)
.+.+.+. . . ++..+.+.|+|.+++... . ..+.+++.+.. .+...|++
T Consensus 219 ~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi----- 293 (353)
T cd04735 219 GYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSI----- 293 (353)
T ss_pred EEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCC-----
Confidence 6665532 1 1 236667789999987421 0 13445665532 24445555
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCCeEEec
Q 016596 335 FGSKDFITNRINDTVRKAG-RWKHILNL 361 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~-~~g~Ils~ 361 (386)
.|+++..+.++.-.+..+ ++++|..|
T Consensus 294 -~t~e~ae~~l~~gaD~V~~gR~liadP 320 (353)
T cd04735 294 -NTPDDALEALETGADLVAIGRGLLVDP 320 (353)
T ss_pred -CCHHHHHHHHHcCCChHHHhHHHHhCc
Confidence 345665555443223223 44455444
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=87.94 E-value=5.4 Score=39.21 Aligned_cols=141 Identities=14% Similarity=0.207 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHhh------HHHHHHHHHHHHhhC-CCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEFS------LPYLKQIVDTVKQTH-PDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~-~~~~~~~H~ 286 (386)
++.+.+-..+.++...++|.|+|-+.-.-+ .|+||.. =+||. .-+..++++++++.. ++.++.+-+
T Consensus 139 I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRi 218 (361)
T cd04747 139 IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 445555555666777889999998865332 3677633 11222 456678888888863 345666655
Q ss_pred cC-----------Ccc-----hHHHHHhcCCCEEEcCCC-----------CCH-HHHHHHhCCCeeEEecCCcC-cc---
Q 016596 287 SG-----------SGG-----LLERLALTGVDVVSLDWT-----------VDM-AEGRRRLGPDVAVQGNVDPG-AL--- 334 (386)
Q Consensus 287 cG-----------~~~-----~l~~l~e~g~d~l~~d~~-----------~dl-~e~~~~~g~~~~l~G~vd~~-~l--- 334 (386)
.+ ... ++..+.+.|+|.+++... .++ .++|+.++-.+...|++.+. .+
T Consensus 219 s~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 219 SQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccc
Confidence 43 110 124456789999977321 123 45777777778888988432 11
Q ss_pred -C-------CCHHHHHHHHHHH-HHHcC-CCCeEEec
Q 016596 335 -F-------GSKDFITNRINDT-VRKAG-RWKHILNL 361 (386)
Q Consensus 335 -~-------gt~eev~~~v~~~-i~~~~-~~g~Ils~ 361 (386)
. -|+++..+.+.+- .+..+ ++++|..|
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP 335 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDP 335 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCc
Confidence 1 3677766665532 23223 44555444
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.83 E-value=25 Score=33.26 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhC--CCCcEEEEecCCcchHHHHHhcC
Q 016596 225 TTSMAKYVQYQA-DNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTH--PDLSLILYASGSGGLLERLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~-e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~--~~~~~~~H~cG~~~~l~~l~e~g 300 (386)
++.-+++++.++ +.|++.|=++ ++ .||+.|+ ..+++.+.....+ .+..+.-+. .+..-++...++|
T Consensus 18 ~e~K~~i~~~L~~~~Gv~~IEvg----~~~~s~~e~~-----av~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~A~~~g 87 (280)
T cd07945 18 PSEKLNIAKILLQELKVDRIEVA----SARVSEGEFE-----AVQKIIDWAAEEGLLDRIEVLGFV-DGDKSVDWIKSAG 87 (280)
T ss_pred HHHHHHHHHHHHHHhCCCEEEec----CCCCCHHHHH-----HHHHHHHHhhhhccccCcEEEEec-CcHHHHHHHHHCC
Confidence 445566777775 4599987643 33 7887762 2333333221100 012222232 2322367777888
Q ss_pred CCEEEcC
Q 016596 301 VDVVSLD 307 (386)
Q Consensus 301 ~d~l~~d 307 (386)
++.+++.
T Consensus 88 ~~~i~i~ 94 (280)
T cd07945 88 AKVLNLL 94 (280)
T ss_pred CCEEEEE
Confidence 8876543
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=87.76 E-value=23 Score=36.13 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=35.6
Q ss_pred CCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 239 GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 239 G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
|+..+++.|+.-+ .+ .++.+++++.+++. ++.+...+-.+.+ .++.|.+.|...+++.
T Consensus 245 ~~~~i~f~Dd~f~-~~--------~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iG 304 (472)
T TIGR03471 245 EVREFFFDDDTFT-DD--------KPRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLVG 304 (472)
T ss_pred CCcEEEEeCCCCC-CC--------HHHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEEc
Confidence 7788887776422 22 34566777777765 3443333323333 4789999999877654
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.9 Score=43.95 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++.++.++.+.++|+|.|.+.|..| .+.|... .+++..+++.. +.++-+|++.+... + ..+ .+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G-~~~P~~~--------~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAG-LLTPYAA--------YELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCC-CcCHHHH--------HHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCC
Confidence 4556667778889999999988766 4677665 44555666654 47889999987753 3 333 47899
Q ss_pred CEEEcC-----C---CCCHHHHHHHhC
Q 016596 302 DVVSLD-----W---TVDMAEGRRRLG 320 (386)
Q Consensus 302 d~l~~d-----~---~~dl~e~~~~~g 320 (386)
+.++.. . ..+++.+...+.
T Consensus 224 d~vD~ai~g~g~~agn~~~e~vv~~L~ 250 (592)
T PRK09282 224 DIIDTAISPLAFGTSQPPTESMVAALK 250 (592)
T ss_pred CEEEeeccccCCCcCCHhHHHHHHHHH
Confidence 988531 1 246666665554
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=87.57 E-value=24 Score=32.89 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe--cCCcchHH
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA--SGSGGLLE 294 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~--cG~~~~l~ 294 (386)
++.+.+..++-++++.+.|+|+|++-.-.. --++|+. .-.+-+++.++++.- ..|+-+.+ ++...-|.
T Consensus 23 ~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~t-----va~m~~i~~~v~~~~-~~p~GvnvL~nd~~aal~ 96 (257)
T TIGR00259 23 LNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPET-----VAAMAVIAGQLKSDV-SIPLGINVLRNDAVAALA 96 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHH-----HHHHHHHHHHHHHhc-CCCeeeeeecCCCHHHHH
Confidence 566777778888899999999998743211 1244433 334556667776653 34543332 22222355
Q ss_pred HHHhcCCCEEEc---------CCC------CCHHHHHHHhCCCeeEEecCCcCc---c-CCCHHHHHHHHHHHHHHcCCC
Q 016596 295 RLALTGVDVVSL---------DWT------VDMAEGRRRLGPDVAVQGNVDPGA---L-FGSKDFITNRINDTVRKAGRW 355 (386)
Q Consensus 295 ~l~e~g~d~l~~---------d~~------~dl~e~~~~~g~~~~l~G~vd~~~---l-~gt~eev~~~v~~~i~~~~~~ 355 (386)
.-..+|.+-+-. |+. ..+-..|+.++.++.+..+|.... | .-+ +.+.++.++..+...
T Consensus 97 iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~---~~e~a~~~~~~~~aD 173 (257)
T TIGR00259 97 IAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRD---LESIALDTVERGLAD 173 (257)
T ss_pred HHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCC---HHHHHHHHHHhcCCC
Confidence 555667665432 221 245567888898899999998753 3 334 444445555444323
Q ss_pred CeEEe
Q 016596 356 KHILN 360 (386)
Q Consensus 356 g~Ils 360 (386)
+.|++
T Consensus 174 avivt 178 (257)
T TIGR00259 174 AVILS 178 (257)
T ss_pred EEEEC
Confidence 44443
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=87.45 E-value=23 Score=34.35 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCC----c--------CC----CCHHHHHHh--hHHHHHHHHHHHHhhCCCCcEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIF----DSW----A--------TE----LSPVDFEEF--SLPYLKQIVDTVKQTHPDLSLI 283 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~----d~~----~--------~~----iSp~~f~ef--~~P~~k~l~~~i~~~~~~~~~~ 283 (386)
+..++++++..++|||+|=+- +.. . +. -..++|+++ -..+++++.+..++. |.++
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~~- 93 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKEL--GLTI- 93 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHh--CCcE-
Confidence 344556666778899975321 111 0 00 112445543 456667899999987 4542
Q ss_pred EEecCC-cchHHHHHhcCCCEEEcCCC--CCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 284 LYASGS-GGLLERLALTGVDVVSLDWT--VDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 284 ~H~cG~-~~~l~~l~e~g~d~l~~d~~--~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
-+.-- ..-++.+.++|++++-+... .++.-+++. .|.-+.|- +. .+|.+||...+..+.+. |...++
T Consensus 94 -~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvils----tG--~~t~~Ei~~Av~~i~~~-g~~~i~ 165 (327)
T TIGR03586 94 -FSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMS----TG--IATLEEIQEAVEACREA-GCKDLV 165 (327)
T ss_pred -EEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEE----CC--CCCHHHHHHHHHHHHHC-CCCcEE
Confidence 22222 22478889999999977543 454444332 33322221 11 37899999998887654 333566
Q ss_pred EecCCCCCCCCcHH--HHHHHHHHHHhh
Q 016596 359 LNLGHGIKVGTPEE--NVAHFFEVAKAI 384 (386)
Q Consensus 359 ls~gc~i~~~tp~E--ni~a~~~a~~~y 384 (386)
|-- |.-...+|++ |+++|-..-+.|
T Consensus 166 Llh-C~s~YP~~~~~~nL~~i~~lk~~f 192 (327)
T TIGR03586 166 LLK-CTSSYPAPLEDANLRTIPDLAERF 192 (327)
T ss_pred EEe-cCCCCCCCcccCCHHHHHHHHHHh
Confidence 644 5433334554 555554444445
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.1 Score=38.55 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHHHH---------HhhHHHHHHHHHHHHhhC-CCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVDFE---------EFSLPYLKQIVDTVKQTH-PDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~f~---------ef~~P~~k~l~~~i~~~~-~~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-+.-..+ .|+||..=. +-=..+..++++++++.. ++.++.+-+
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 555556666677778899999998754221 266764210 111234567777777653 245666654
Q ss_pred cCC------cc------hHHHHHhcCCCEEEc
Q 016596 287 SGS------GG------LLERLALTGVDVVSL 306 (386)
Q Consensus 287 cG~------~~------~l~~l~e~g~d~l~~ 306 (386)
... ++ ++..+.+.|+|.+++
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~v 247 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHV 247 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 421 11 246677889999975
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=87.20 E-value=15 Score=33.92 Aligned_cols=148 Identities=13% Similarity=0.186 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..++.++.+.++|++.|-++-+...-..| ..+...++++.+.+.+++.++..++-.....++...+.|++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~ 90 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVP------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDE 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccc------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCE
Confidence 34556677777888999988765433221112 123344556666655323444344432233578899999998
Q ss_pred EEcCCCC---------------CHHHHH------HHhCCCeeEEecCCcCccC--CCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 304 VSLDWTV---------------DMAEGR------RRLGPDVAVQGNVDPGALF--GSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 304 l~~d~~~---------------dl~e~~------~~~g~~~~l~G~vd~~~l~--gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
+.+.-.. ++.++. +..| +.+..++-.. .. -+++++.+.++++.+.+.+ .+.+.
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~-~i~l~ 166 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDA-FGCKTDPEYVLEVAKALEEAGAD-EISLK 166 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEee-cCCCCCHHHHHHHHHHHHHcCCC-EEEec
Confidence 7552211 122221 2223 2333333111 13 7888888888888765423 34443
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhh
Q 016596 361 LGHGIKVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 361 ~gc~i~~~tp~Eni~a~~~a~~~y 384 (386)
.. -.-..|+.+..+++.+++.
T Consensus 167 Dt---~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 167 DT---VGLATPEEVAELVKALREA 187 (265)
T ss_pred hh---cCCcCHHHHHHHHHHHHHh
Confidence 22 2234667788888887763
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.18 E-value=5.2 Score=37.53 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
+.++++.+.++|++.|.+.|+.+ .+.|+...+++. .+++..+ ++++-+|++-+..+ + ..+ .+.|++
T Consensus 140 ~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv~--------~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 140 LLELLELVNEIKPDVFYIVDSFG-SMYPEDIKRIIS--------LLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVE 210 (266)
T ss_pred HHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHHH--------HHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCC
Confidence 34455667778999999988776 578887666543 3333221 26899999988752 2 333 467988
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
.++.
T Consensus 211 ~vd~ 214 (266)
T cd07944 211 IIDA 214 (266)
T ss_pred EEEE
Confidence 8753
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=87.10 E-value=4.4 Score=37.56 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l~ 305 (386)
+.++.+.+.|++.|.+.|..+ .++|+.+++++ +.+++..+++++-+|++-+..+ + ..+ .+.|++.++
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~li--------~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id 220 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVG-LATPEEVAELV--------KALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHcCCCEEEechhcC-CcCHHHHHHHH--------HHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEE
Confidence 444556778999999888765 68998877763 3333333236789999988753 3 333 367888874
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=86.99 E-value=27 Score=32.74 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC----cc---hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS----GG---LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~----~~---~l~~l~e~g 300 (386)
.++.++...++|+|++.+.-|...-.|++. +.-|++++.+.. +.|+++|.... .. .+..+.+.+
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~----~~~~~~~ia~~~-----~~pi~iYn~P~~tg~~l~~~~~~~L~~~~ 151 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEG----IVAHFKAVADAS-----DLPVILYNIPGRTGVDLSPETIARLAEHP 151 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHH----HHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHhcCC
Confidence 345555677889999998666544455443 455677777763 46888876543 21 234444432
Q ss_pred CCEEEc-CCCCCHHH---HHHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDMAE---GRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl~e---~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+.. +.+..++++.++.|-|.
T Consensus 152 -~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~ 185 (281)
T cd00408 152 -NIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDD 185 (281)
T ss_pred -CEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchH
Confidence 45544 33345544 44445555666555553
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.74 E-value=4.2 Score=38.13 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCC--CcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD--LSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~--~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
.+.++.+.++|++.|.+.|+.+. +.|+...++ +..+++..++ +++-+|++-+..+ + ..+ .+.|++
T Consensus 146 ~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~ 216 (268)
T cd07940 146 IEVVEAAIEAGATTINIPDTVGY-LTPEEFGEL--------IKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGAR 216 (268)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC-CCHHHHHHH--------HHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCC
Confidence 34445566789999999887764 777776664 3344443333 6788999987652 2 222 367998
Q ss_pred EEE
Q 016596 303 VVS 305 (386)
Q Consensus 303 ~l~ 305 (386)
.++
T Consensus 217 ~iD 219 (268)
T cd07940 217 QVE 219 (268)
T ss_pred EEE
Confidence 874
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=86.69 E-value=3.8 Score=42.97 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g~ 301 (386)
++..+.++.+.++|+|.|.+.|..+ .+.|.... +++..+++.. +.|+-+|++-+... ...+ .+.|+
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G-~~~P~~v~--------~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAG-ILTPKAAY--------ELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGA 218 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHH--------HHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 4455666678889999999888765 57776643 4455555544 46888999887653 2444 47799
Q ss_pred CEEEc-----CC---CCCHHHHHHHhC
Q 016596 302 DVVSL-----DW---TVDMAEGRRRLG 320 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~g 320 (386)
+.++. .. ..+++.+...+.
T Consensus 219 ~~vd~ai~GlG~~tGn~~le~vv~~L~ 245 (582)
T TIGR01108 219 DGIDTAISSMSGGTSHPPTETMVAALR 245 (582)
T ss_pred CEEEeccccccccccChhHHHHHHHHH
Confidence 98853 22 246666555553
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=86.61 E-value=15 Score=32.06 Aligned_cols=85 Identities=22% Similarity=0.332 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
...+.++..++.|++.+++-+.. ++.+.|.+.+ +++.+.+++. +.++++|. ..+...+++++.+++
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~---~~~~~~~~~a----~~l~~~~~~~--~~~liin~-----~~~la~~~~~dGvHl 78 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKD---LSDEELLELA----RRLAELCQKY--GVPLIIND-----RVDLALELGADGVHL 78 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS---S-HHHHHHHH----HHHHHHHHHT--TGCEEEES------HHHHHHCT-SEEEE
T ss_pred hHHHHHHHHHHCCCcEEEEcCCC---CCccHHHHHH----HHHHHHhhcc--eEEEEecC-----CHHHHHhcCCCEEEe
Confidence 34556667888999999986664 5666666644 5566666665 56788876 356677899999999
Q ss_pred CCC-CCHHHHHHHhCCCeeE
Q 016596 307 DWT-VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 307 d~~-~dl~e~~~~~g~~~~l 325 (386)
.+. .+..++++.++.+..+
T Consensus 79 ~~~~~~~~~~r~~~~~~~~i 98 (180)
T PF02581_consen 79 GQSDLPPAEARKLLGPDKII 98 (180)
T ss_dssp BTTSSSHHHHHHHHTTTSEE
T ss_pred cccccchHHhhhhcccceEE
Confidence 764 6788888888765444
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=86.61 E-value=29 Score=32.82 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc-c--hHHHHHh-cCCCE
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG-G--LLERLAL-TGVDV 303 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~-~--~l~~l~e-~g~d~ 303 (386)
++.++...++|+|++.+.-|.....|++ =+.-|++++.++. +.|++++.+ |.. . .+..+.+ .+ ++
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~----~i~~~f~~v~~~~-----~~pi~lYn~~g~~l~~~~l~~L~~~~p-ni 153 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQE----GLYAHVEAVCKST-----DLGVIVYNRANAVLTADSLARLAERCP-NL 153 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHH----HHHHHHHHHHhcC-----CCCEEEEeCCCCCCCHHHHHHHHhcCC-CE
Confidence 3456667788999998866654444543 3444777777765 357777655 432 2 2455555 44 55
Q ss_pred EEc-CCCCCHHH---HHHHhCCCeeEEecC
Q 016596 304 VSL-DWTVDMAE---GRRRLGPDVAVQGNV 329 (386)
Q Consensus 304 l~~-d~~~dl~e---~~~~~g~~~~l~G~v 329 (386)
+.+ +...|+.. +.+..+++..++.|.
T Consensus 154 vgiKds~~d~~~~~~~~~~~~~~~~v~~G~ 183 (289)
T cd00951 154 VGFKDGVGDIELMRRIVAKLGDRLLYLGGL 183 (289)
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeCC
Confidence 555 33456554 444556555555554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=28 Score=32.42 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=62.0
Q ss_pred HHHHHHHhCCCEEEEe--cC-Cc-C-CCCHHHHHHhh--HHH--------HHHHHHHHHhhCCCCcEEEEecCCcc---h
Q 016596 231 YVQYQADNGAQAVQIF--DS-WA-T-ELSPVDFEEFS--LPY--------LKQIVDTVKQTHPDLSLILYASGSGG---L 292 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~--d~-~~-~-~iSp~~f~ef~--~P~--------~k~l~~~i~~~~~~~~~~~H~cG~~~---~ 292 (386)
.++.+.++|+|.+.+- |. +. + -++|+..+.+- .|. -.+.++.+.+.|.+ .+.+|...... .
T Consensus 37 el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad-~It~H~Ea~~~~~~~ 115 (254)
T PRK14057 37 YLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAH-CITLQAEGDIHLHHT 115 (254)
T ss_pred HHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCC-EEEEeeccccCHHHH
Confidence 4445667899988752 21 11 1 36666655541 120 13456666666544 57889875433 3
Q ss_pred HHHHHhcCC----------CEEEcCCCCCHHHHHHHhC--CCeeEEecCCcCc
Q 016596 293 LERLALTGV----------DVVSLDWTVDMAEGRRRLG--PDVAVQGNVDPGA 333 (386)
Q Consensus 293 l~~l~e~g~----------d~l~~d~~~dl~e~~~~~g--~~~~l~G~vd~~~ 333 (386)
+..+.+.|+ -++.+.+.++++.+...++ +.+.+|. |+|..
T Consensus 116 l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMt-V~PGf 167 (254)
T PRK14057 116 LSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLA-VNPGY 167 (254)
T ss_pred HHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEE-ECCCC
Confidence 688888886 4667777778887777665 5577775 77753
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=86.40 E-value=29 Score=32.61 Aligned_cols=144 Identities=12% Similarity=0.135 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCc-----CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC----------
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWA-----TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS---------- 289 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~-----~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~---------- 289 (386)
++-.++.++.+.++|.+.|=++-+.. .+++.+.|+ +++++.+... +.++..++-|.
T Consensus 20 ~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e-----~i~~~~~~~~----~~~l~~~~r~~~~~~~~~~p~ 90 (275)
T cd07937 20 TEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWE-----RLRELRKAMP----NTPLQMLLRGQNLVGYRHYPD 90 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHH-----HHHHHHHhCC----CCceehhcccccccCccCCCc
Confidence 34444567778889999876654321 133443332 2333333332 34556666552
Q ss_pred -cc--hHHHHHhcCCCEEEcC-CCCCHHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 290 -GG--LLERLALTGVDVVSLD-WTVDMAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 290 -~~--~l~~l~e~g~d~l~~d-~~~dl~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.. .++...+.|++.+.+. ...|+..+ .+..|. .+..+++...- ..+++.+.+.++++.+.+.+ .
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~--~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~---~ 165 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK--HVEGAICYTGSPVHTLEYYVKLAKELEDMGAD---S 165 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC---E
Confidence 12 3567778899988653 22344322 223343 33345543322 57889998888888765423 3
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++-..++ .-..|+.+..+++++++
T Consensus 166 i~l~DT~-G~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 166 ICIKDMA-GLLTPYAAYELVKALKK 189 (275)
T ss_pred EEEcCCC-CCCCHHHHHHHHHHHHH
Confidence 3333333 33346678888887775
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.39 E-value=5.7 Score=39.37 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCC-c----CCCCHHH---HHHhh------HHHHHHHHHHHHhhCC-CCcEEEE
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSW-A----TELSPVD---FEEFS------LPYLKQIVDTVKQTHP-DLSLILY 285 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~-~~~~~~H 285 (386)
++.+.+-..+.++...++|.|+|-|.-.. + .|+||.. =+||. .-+..++++.+++.-+ +.++.+.
T Consensus 145 I~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vr 224 (382)
T cd02931 145 VETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLR 224 (382)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEE
Confidence 44455555556667778999999886522 2 3777732 12222 4566788888877532 3467776
Q ss_pred ecCC---------------------c-c----hHHHHHhcCCCEEEcCCC-------------------CC-HHHHHHHh
Q 016596 286 ASGS---------------------G-G----LLERLALTGVDVVSLDWT-------------------VD-MAEGRRRL 319 (386)
Q Consensus 286 ~cG~---------------------~-~----~l~~l~e~g~d~l~~d~~-------------------~d-l~e~~~~~ 319 (386)
+... . . ++..+.+.|+|.+++... .+ .+.+|+.+
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~ 304 (382)
T cd02931 225 YSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV 304 (382)
T ss_pred EechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC
Confidence 6521 1 1 235556789999876411 01 24567767
Q ss_pred CCCeeEEecCC
Q 016596 320 GPDVAVQGNVD 330 (386)
Q Consensus 320 g~~~~l~G~vd 330 (386)
+-.+...|++.
T Consensus 305 ~~pvi~~G~i~ 315 (382)
T cd02931 305 DVPVIMAGRME 315 (382)
T ss_pred CCCEEEeCCCC
Confidence 66666677773
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.31 E-value=20 Score=32.36 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
.+.++..++.|++.+++-+-. .+.+.+ .-.-+++.+.++++ +++.+ +.+. ++.-.+.++|.+|+.+
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~---~~~~~~----~~~a~~~~~lc~~~--~v~li--INd~---~dlA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKD---LSDEEY----LALAEKLRALCQKY--GVPLI--INDR---VDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCC---CChHHH----HHHHHHHHHHHHHh--CCeEE--ecCc---HHHHHhCCCCEEEcCC
Confidence 566777889999999986643 333443 34456777777776 45544 4444 4555689999999977
Q ss_pred C-CCHHHHHHHhCCCeeE
Q 016596 309 T-VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 309 ~-~dl~e~~~~~g~~~~l 325 (386)
. +++.++++.++.++.|
T Consensus 90 ~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 90 DDMPLAEARELLGPGLII 107 (211)
T ss_pred cccchHHHHHhcCCCCEE
Confidence 5 7889999999887554
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=4.2 Score=42.71 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch--HHHH--HhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL--LERL--ALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~--l~~l--~e~g 300 (386)
.++..+.++.+.++|+|.|.+.|..+ .+.|....++ +..+++.. +.|+-+|++.+... ...+ .+.|
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G-~l~P~~~~~l--------v~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAG-LLKPYAAYEL--------VSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHHH--------HHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcC
Confidence 45666677778889999999887765 5777765543 44444443 46889999988753 2444 4789
Q ss_pred CCEEEc-----CC---CCCHHHHHHHh
Q 016596 301 VDVVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 301 ~d~l~~-----d~---~~dl~e~~~~~ 319 (386)
++.++. .. ..+++++...+
T Consensus 224 a~~vD~ai~glG~~~Gn~~le~vv~~L 250 (593)
T PRK14040 224 IDGVDTAISSMSMTYGHSATETLVATL 250 (593)
T ss_pred CCEEEeccccccccccchhHHHHHHHH
Confidence 998853 22 14556555555
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=32 Score=32.42 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcCCCEEEcC
Q 016596 233 QYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 233 ~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~d 307 (386)
+...+.|+..+.+.++..+ ++. ....|+.++++.+++.++ .+.+|.| |..+ .+..|.+.|++.++.+
T Consensus 50 ~~a~~~g~~~~~lv~sg~~-~~~-----~~~e~~~ei~~~ik~~~p--~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~ 119 (279)
T PRK08508 50 KMAKANGALGFCLVTSGRG-LDD-----KKLEYVAEAAKAVKKEVP--GLHLIACNGTASVEQLKELKKAGIFSYNHN 119 (279)
T ss_pred HHHHHCCCCEEEEEeccCC-CCc-----ccHHHHHHHHHHHHhhCC--CcEEEecCCCCCHHHHHHHHHcCCCEEccc
Confidence 3344568888776443322 232 244688889999988642 2345645 5544 4788999999998753
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=85.32 E-value=33 Score=32.44 Aligned_cols=138 Identities=14% Similarity=0.193 Sum_probs=70.1
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCC-CcEEEEecCC-c-chHHHHHhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPD-LSLILYASGS-G-GLLERLALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~-~~~~~H~cG~-~-~~l~~l~e~g~d~l~ 305 (386)
..+++..+.+..+|....+.. .+++. | +.+.++.+.+.+.. + +|+.+|.|-. . ..+....+.|++.+.
T Consensus 31 avi~aAe~~~~PvIl~~~~~~~~~~~~--~-~~~~~~~~~~a~~~-----~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 31 AILEAAEEENSPVIIQVSEGAIKYMGG--Y-KMAVAMVKTLIERM-----SIVPVALHLDHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred HHHHHHHHhCCCEEEEcCcchhhccCc--H-HHHHHHHHHHHHHC-----CCCeEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 334455566788776433221 12221 1 12334444444433 4 7999997633 3 246677788999998
Q ss_pred cCCC-CCH----H------HHHHHhCCCeeEEecCCcC----c------c-CCCHHHHHHHHHHH-HHHcCCCCeEEecC
Q 016596 306 LDWT-VDM----A------EGRRRLGPDVAVQGNVDPG----A------L-FGSKDFITNRINDT-VRKAGRWKHILNLG 362 (386)
Q Consensus 306 ~d~~-~dl----~------e~~~~~g~~~~l~G~vd~~----~------l-~gt~eev~~~v~~~-i~~~~~~g~Ils~g 362 (386)
+|.. .+. + +..+.+| +.+-+-+... . . ..+|||+.+.+++. ++..+ .=+++-
T Consensus 103 id~s~l~~~eni~~t~~v~~~a~~~g--v~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~La---vs~Gt~ 177 (282)
T TIGR01859 103 IDGSHLPFEENLALTKKVVEIAHAKG--VSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLA---AAIGTS 177 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEe---eccCcc
Confidence 8764 222 2 2223344 3444322220 1 1 34899888777644 22111 002333
Q ss_pred CCCC---CCCcHHHHHHHHHH
Q 016596 363 HGIK---VGTPEENVAHFFEV 380 (386)
Q Consensus 363 c~i~---~~tp~Eni~a~~~a 380 (386)
|++. +...+|.++.+.+.
T Consensus 178 hg~~~~~~~l~~e~L~~i~~~ 198 (282)
T TIGR01859 178 HGKYKGEPGLDFERLKEIKEL 198 (282)
T ss_pred ccccCCCCccCHHHHHHHHHH
Confidence 5444 34566666665544
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.18 E-value=6 Score=37.25 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
..++++.+.++|++.|.+.|+.+ .++|....+++ +.+++..++.++-+|++-+... + ..+ .+.|++.
T Consensus 153 ~~~~~~~~~~~g~~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 223 (273)
T cd07941 153 ALATLKAAAEAGADWLVLCDTNG-GTLPHEIAEIV--------KEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQ 223 (273)
T ss_pred HHHHHHHHHhCCCCEEEEecCCC-CCCHHHHHHHH--------HHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCE
Confidence 33444455678999999888776 57787766554 3444433346889999988652 2 222 3579888
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
++
T Consensus 224 id 225 (273)
T cd07941 224 VQ 225 (273)
T ss_pred EE
Confidence 75
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=41 Score=34.30 Aligned_cols=145 Identities=14% Similarity=0.207 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEe-----cCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIF-----DSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-------- 290 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~-----d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-------- 290 (386)
-++-.+..++.+.++|.+.|=+. |....|++++-|+. ++++.+.+ ++.++..++-|..
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~-----l~~l~~~~----~~~~l~~l~r~~N~~G~~~~~ 93 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWER-----LKEIRKRL----KNTKIQMLLRGQNLVGYRHYA 93 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHH-----HHHHHHhC----CCCEEEEEeccccccCccccc
Confidence 34555667777888898887652 11234788875442 33333332 2445555444421
Q ss_pred ----c-hHHHHHhcCCCEEEc-CCCCCHHHH------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 291 ----G-LLERLALTGVDVVSL-DWTVDMAEG------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 291 ----~-~l~~l~e~g~d~l~~-d~~~dl~e~------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
. +++...+.|++++.+ +...|+..+ .+..|. .+.|+++-..- .-|++.+.+.++++.+.+.+
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad--- 168 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA--HVQGAISYTVSPVHTLEYYLEFARELVDMGVD--- 168 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC---
Confidence 1 146667889998865 333333322 233443 45566643322 45788888888877665323
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.++- |+...-..|+.+..+++++++
T Consensus 169 ~I~i-~Dt~G~l~P~~v~~Lv~~lk~ 193 (467)
T PRK14041 169 SICI-KDMAGLLTPKRAYELVKALKK 193 (467)
T ss_pred EEEE-CCccCCcCHHHHHHHHHHHHH
Confidence 2333 333344567778888888775
|
|
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=85.08 E-value=33 Score=31.94 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhc-
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT- 299 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~- 299 (386)
.+.-.+...+.++.+++.|||.|-+.-..+ ..+++. -.+++++.+.+.. +.|+.+-+. +...++.-.+.
T Consensus 21 ~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~-~~~~~e-------e~~r~v~~i~~~~-~~piSIDT~-~~~v~e~aL~~~ 90 (252)
T cd00740 21 KAEDYDEALDVARQQVEGGAQILDLNVDYG-GLDGVS-------AMKWLLNLLATEP-TVPLMLDST-NWEVIEAGLKCC 90 (252)
T ss_pred HcCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHH-------HHHHHHHHHHHhc-CCcEEeeCC-cHHHHHHHHhhC
Confidence 334446666788889999999998865322 455433 2344444455433 456544332 11245555555
Q ss_pred -CCCEEE-cCCCC------CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc----C--CCCeEEecCCCC
Q 016596 300 -GVDVVS-LDWTV------DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA----G--RWKHILNLGHGI 365 (386)
Q Consensus 300 -g~d~l~-~d~~~------dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~----~--~~g~Ils~gc~i 365 (386)
|+++++ +.... .+.++.+++|-.++++-. ++...-.|.++..+.++++++.+ + ....|+-||-+.
T Consensus 91 ~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~-~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgig~ 169 (252)
T cd00740 91 QGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF-DEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLILP 169 (252)
T ss_pred CCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCccc
Confidence 999884 43221 133445667766666642 22222334444444444444432 2 248999999885
Q ss_pred CC
Q 016596 366 KV 367 (386)
Q Consensus 366 ~~ 367 (386)
..
T Consensus 170 ~~ 171 (252)
T cd00740 170 IA 171 (252)
T ss_pred cc
Confidence 44
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=84.87 E-value=6.4 Score=37.10 Aligned_cols=69 Identities=30% Similarity=0.387 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
..++++.+.++|++.|.+.|+.+. +.|+...++ +..+++.. +.++-+|++-+..+ + ..+ .+.|++.
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~-~~~l~~H~Hnd~GlA~aN~laA~~aGa~~ 220 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGL-LTPYAAYEL--------VKALKKEV-GLPIHLHTHDTSGLAVATYLAAAEAGVDI 220 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCC-CCHHHHHHH--------HHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 334455567889999999887764 667765543 44444443 36889999988653 2 222 4679988
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
++.
T Consensus 221 vd~ 223 (275)
T cd07937 221 VDT 223 (275)
T ss_pred EEE
Confidence 753
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=84.85 E-value=9.4 Score=35.30 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=68.6
Q ss_pred HHHHHHhCCCEEEE--ec--CC-------cCCCCH---------HHHHHh--hHHHHHHHHHHHHhhCCCCcEEEEecCC
Q 016596 232 VQYQADNGAQAVQI--FD--SW-------ATELSP---------VDFEEF--SLPYLKQIVDTVKQTHPDLSLILYASGS 289 (386)
Q Consensus 232 ~~~~~e~G~d~i~i--~d--~~-------~~~iSp---------~~f~ef--~~P~~k~l~~~i~~~~~~~~~~~H~cG~ 289 (386)
+++..++|||.|=+ .. .. ..+.++ ++|+++ -...+++|.+.+++. |+ .+.+.-.
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--gi--~f~stpf 77 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKEL--GI--DFFSTPF 77 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHT--T---EEEEEE-
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHc--CC--EEEECCC
Confidence 56778899998743 21 11 112222 445544 455678999999997 33 2333222
Q ss_pred c-chHHHHHhcCCCEEEcCC--CCCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 290 G-GLLERLALTGVDVVSLDW--TVDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 290 ~-~~l~~l~e~g~d~l~~d~--~~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
. .-++.+.++++..+-+.. .+++.-+++. .|.-+.|.-| ..|.+||++.|+-+-+. ++..++|-- |.
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG------~stl~EI~~Av~~~~~~-~~~~l~llH-C~ 149 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG------MSTLEEIERAVEVLREA-GNEDLVLLH-CV 149 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T------T--HHHHHHHHHHHHHH-CT--EEEEE-E-
T ss_pred CHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC------CCCHHHHHHHHHHHHhc-CCCCEEEEe-cC
Confidence 2 247888899999885532 3555544443 4433333222 47889998887776444 434444432 33
Q ss_pred CCCCCcH--HHHHHHHHHHHhhc
Q 016596 365 IKVGTPE--ENVAHFFEVAKAIR 385 (386)
Q Consensus 365 i~~~tp~--Eni~a~~~a~~~yg 385 (386)
-..-||+ -|+++|-..-+.||
T Consensus 150 s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 150 SSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp SSSS--GGG--TTHHHHHHHHST
T ss_pred CCCCCChHHcChHHHHHHHHhcC
Confidence 3333444 46666655555554
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.72 E-value=6.4 Score=36.65 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
+.+.++.+.++|++.|.++|+.+. +.|+...++ +..+++.. +.++-+|++-+... + ..+ .+.|++.
T Consensus 141 ~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~-~~~l~~H~Hn~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 141 LIEFAEVAQEAGADRLRFADTVGI-LDPFTTYEL--------IRRLRAAT-DLPLEFHAHNDLGLATANTLAAVRAGATH 210 (259)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 344455566789999999888774 677765554 34444443 26889999988652 2 222 4679988
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
++
T Consensus 211 vd 212 (259)
T cd07939 211 VS 212 (259)
T ss_pred EE
Confidence 74
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=84.36 E-value=25 Score=30.50 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc-----c----hHHHHHh
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-----G----LLERLAL 298 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-----~----~l~~l~e 298 (386)
..+.++.+++.|++++++.- -..+.+.+...+. .++++.++.... . ..+...+
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g----------------~~i~~~~~~~~~~--~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP----------------GYVRLAADALAGS--DVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH----------------HHHHHHHHHhCCC--CCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 44455566779999988643 1222233333220 267788876554 2 1466678
Q ss_pred cCCCEEEcCCC----CC--HH-------HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 299 TGVDVVSLDWT----VD--MA-------EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 299 ~g~d~l~~d~~----~d--l~-------e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
.|+|.+.+... .+ .+ ++.+..+..+.++-...|... .+++++.+.++.+ ...+-.++=.+++. .
T Consensus 77 ~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~-~~~g~~~iK~~~~~-~ 153 (201)
T cd00945 77 LGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIA-AEAGADFIKTSTGF-G 153 (201)
T ss_pred cCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHH-HHhCCCEEEeCCCC-C
Confidence 89998865321 22 22 233332112333322223222 4677777665555 33331133333321 2
Q ss_pred CCCCcHHHHHHHHHHH
Q 016596 366 KVGTPEENVAHFFEVA 381 (386)
Q Consensus 366 ~~~tp~Eni~a~~~a~ 381 (386)
+.+...+.++.+.+..
T Consensus 154 ~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 154 GGGATVEDVKLMKEAV 169 (201)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 2344678888777654
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.96 E-value=38 Score=31.80 Aligned_cols=144 Identities=11% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-c------c-hHHH
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-G------G-LLER 295 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~------~-~l~~ 295 (386)
-++..+++++.+.++|++.|=++-+ ..||+. .|+.+++.+.... +.....+.-.. . . .++.
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~---~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWP---GSNPKD-----TEFFARAKKLKLK---HAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC---cCCHHH-----HHHHHHHHHcCCC---CcEEEEEecccccCCCccchHHHHH
Confidence 3566677888899999998865322 356665 4445555544311 22334443221 1 1 2567
Q ss_pred HHhcCCCEEEcCCC-----------CC----H---H---HHHHHhCCCeeEEecCCcCc-cCCCHHHHHHHHHHHHHHcC
Q 016596 296 LALTGVDVVSLDWT-----------VD----M---A---EGRRRLGPDVAVQGNVDPGA-LFGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 296 l~e~g~d~l~~d~~-----------~d----l---~---e~~~~~g~~~~l~G~vd~~~-l~gt~eev~~~v~~~i~~~~ 353 (386)
..+.|++.+.+... .+ + . +..+..|-++.+. ..+-.. ...+++.+.+.++++.+.+.
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~g~ 165 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEAGA 165 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhCCC
Confidence 88899998765211 11 1 1 1222334433321 111101 13578888888888876532
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+ .+.|.-.. .-..|+.+..+++++++
T Consensus 166 ~-~i~l~DT~---G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 166 D-WLVLCDTN---GGTLPHEIAEIVKEVRE 191 (273)
T ss_pred C-EEEEecCC---CCCCHHHHHHHHHHHHH
Confidence 3 44443222 23356667888887765
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=83.95 E-value=42 Score=32.35 Aligned_cols=66 Identities=26% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcCCCEEEc
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g~d~l~~ 306 (386)
++.+.+.|+..+.+.....+. +.+ -.+++.++++.+++.. +. -++.+ |..+ .+..|.+.|++.+++
T Consensus 100 ~~~~~~~g~~~~~l~~~g~~p-~~~-----~~~~~~e~i~~i~~~~-~i--~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 100 AKEAIEEGAGTFCIVASGRGP-SGK-----EVDQVVEAVKAIKEET-DL--EICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred HHHHHHCCCCEEEEEecCCCC-Cch-----HHHHHHHHHHHHHhcC-CC--cEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 334556787666554333221 111 1367778888888752 32 23333 4433 478899999998765
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=83.93 E-value=37 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC--CcHHHHHHHHHHHHhhcC
Q 016596 337 SKDFITNRINDTVRKAGRWKHILNLGHGIKVG--TPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 337 t~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~--tp~Eni~a~~~a~~~yg~ 386 (386)
|||.|.+. ++..+.-|.=+++|-+..++ -.++.|+++++++++..|
T Consensus 209 ~peNV~~a----i~~~~P~GVDVsSGVE~~pG~~KD~~KI~~fv~~vr~~~~ 256 (256)
T PLN02363 209 TPENVHEA----VSLLKPTGVDVSSGICGPDGIRKDPSKISSFISAVKSVAY 256 (256)
T ss_pred CHHHHHHH----HHhcCCcEEEeCCcccCCCCcccCHHHHHHHHHHHHhhcC
Confidence 44555444 44555456777888887666 589999999999998765
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=22 Score=35.99 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE---ecCCcc------hHHHHHhcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY---ASGSGG------LLERLALTG 300 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H---~cG~~~------~l~~l~e~g 300 (386)
+.+++.+++|||.|+++-+.-++=+. -..|-..-+++.++.+|++ |+.+.+- +..+.. .++.+.++|
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~--~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVR--NNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhh--ccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 45567789999999986532110000 0122233477788888987 4555443 222211 145566889
Q ss_pred CCEEEcCCCCCHHHHHHHhCCCeeEEec
Q 016596 301 VDVVSLDWTVDMAEGRRRLGPDVAVQGN 328 (386)
Q Consensus 301 ~d~l~~d~~~dl~e~~~~~g~~~~l~G~ 328 (386)
+|++-+...--+.-+++..++ +.+.+.
T Consensus 90 vDgvIV~d~G~l~~~ke~~p~-l~ih~s 116 (443)
T PRK15452 90 PDALIMSDPGLIMMVREHFPE-MPIHLS 116 (443)
T ss_pred CCEEEEcCHHHHHHHHHhCCC-CeEEEE
Confidence 999877654445556665543 456553
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=83.74 E-value=26 Score=35.31 Aligned_cols=127 Identities=18% Similarity=0.146 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE--ecCCc-chHHHHHhcCCCEEEcC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY--ASGSG-GLLERLALTGVDVVSLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H--~cG~~-~~l~~l~e~g~d~l~~d 307 (386)
+++.+.++|++++.+.... +. ...+++++.++++ |.++++- ++.+. ..+....+.|+|.+.+.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~----~~--------~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA----DD--------STIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecCC----Ch--------HHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 7778889999998865321 11 0135677777776 4555552 33332 23455678899988543
Q ss_pred CC--------C---CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHH
Q 016596 308 WT--------V---DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAH 376 (386)
Q Consensus 308 ~~--------~---dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a 376 (386)
.. . .+.++++.++-.+.+.|||.+ +.+.++++.+.+ ++++++. =+....|.+.+++
T Consensus 139 pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~-----------~n~~~~l~aGAd-gv~vGsa-I~~~~d~~~~~~~ 205 (430)
T PRK07028 139 VGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDA-----------ETAAKAVAAGAD-IVIVGGN-IIKSADVTEAARK 205 (430)
T ss_pred eccchhhcCCChHHHHHHHHhhCCCcEEEECCCCH-----------HHHHHHHHcCCC-EEEEChH-HcCCCCHHHHHHH
Confidence 21 1 234455544444777888854 224444444322 4444433 1122346677777
Q ss_pred HHHHHHhh
Q 016596 377 FFEVAKAI 384 (386)
Q Consensus 377 ~~~a~~~y 384 (386)
+.+..++|
T Consensus 206 l~~~i~~~ 213 (430)
T PRK07028 206 IREAIDSG 213 (430)
T ss_pred HHHHHhcc
Confidence 77766654
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=83.70 E-value=7.3 Score=37.91 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCCcch-H-HH--HHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGSGGL-L-ER--LALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~~~~-l-~~--l~e~g 300 (386)
+.+.+.++.+.++|++.|.+.|+.+. +.|+...++ +..+++.. +++++-+|.+-|..+ + .. ..+.|
T Consensus 144 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~~--------v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCVYVVDSAGA-LLPEDVRDR--------VRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 34445566777899999998887764 666665443 33333332 257899999988753 2 22 34789
Q ss_pred CCEEE
Q 016596 301 VDVVS 305 (386)
Q Consensus 301 ~d~l~ 305 (386)
++.++
T Consensus 215 a~~iD 219 (337)
T PRK08195 215 ATRID 219 (337)
T ss_pred CCEEE
Confidence 98774
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.25 E-value=42 Score=31.79 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
++.++...+.|+|++.+.-|...-.|+ +-+.-|++++.++. +.|++++.
T Consensus 89 i~~a~~a~~~Gad~v~v~~P~y~~~~~----~~l~~~f~~va~a~-----~lPv~iYn 137 (293)
T PRK04147 89 QELAKYATELGYDAISAVTPFYYPFSF----EEICDYYREIIDSA-----DNPMIVYN 137 (293)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEe
Confidence 344555567888888876555322232 34566777777765 34777664
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=83.24 E-value=7.8 Score=37.65 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCCcch-H-HHH--HhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGSGGL-L-ERL--ALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~~~~-l-~~l--~e~g 300 (386)
+.+.+.++.+.++|++.|.+.|+.+ .+.|+...+++ ..+++.. +++++-+|++-|..+ + ..+ .+.|
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G-~~~P~~v~~~v--------~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 213 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAG-AMLPDDVRDRV--------RALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG 213 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCC-CCCHHHHHHHH--------HHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC
Confidence 3455666677789999999888766 47777765543 3333322 136899999988753 2 333 4789
Q ss_pred CCEEE
Q 016596 301 VDVVS 305 (386)
Q Consensus 301 ~d~l~ 305 (386)
++.+.
T Consensus 214 a~~iD 218 (333)
T TIGR03217 214 ATRID 218 (333)
T ss_pred CCEEE
Confidence 88874
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=83.19 E-value=31 Score=32.37 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCC--c-c-hHHHHHhcCCC-----EEEcCCCCCHHHHHHHhCCC--eeEEecCCc
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYASGS--G-G-LLERLALTGVD-----VVSLDWTVDMAEGRRRLGPD--VAVQGNVDP 331 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~cG~--~-~-~l~~l~e~g~d-----~l~~d~~~dl~e~~~~~g~~--~~l~G~vd~ 331 (386)
.-.+++.++..++. |.|+++|+... . . .++.+.+.|+. +.+.+...|.+.+++.+... +.+-|.. .
T Consensus 135 ~~~f~~~~~lA~~~--~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~-~ 211 (293)
T cd00530 135 EKVLRAAARAQKET--GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIG-K 211 (293)
T ss_pred HHHHHHHHHHHHHH--CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCC-c
Confidence 34566777888886 68999998752 3 2 47888887763 33555444777777765432 2222211 1
Q ss_pred Cc-c-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 332 GA-L-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 332 ~~-l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
.. - .-+.++..+.++++++.+....++++++..-
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~ 247 (293)
T cd00530 212 DKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFR 247 (293)
T ss_pred ccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCc
Confidence 11 0 1124556677888888765568899988754
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=41 Score=31.56 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
...++++.+.++|+.++... .+-..=||.-|+.+....++.+.+..++. |.+++-=.... ..++.+.++ ++++-+
T Consensus 42 ~~~~~A~~lk~~g~~~~r~~-~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~~d~-~~~~~l~~~-vd~~kI 116 (266)
T PRK13398 42 QMVKVAEKLKELGVHMLRGG-AFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEVMDT-RDVEEVADY-ADMLQI 116 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEe-eecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEeeCCh-hhHHHHHHh-CCEEEE
Confidence 34566677777888866543 11122345567767777777777777776 56755433322 235777777 788876
Q ss_pred CCC--CCHHHHHHHhCCCeeEEecCCcCcc----CCCHHHHHHHHHHHHHHcCCCCeEE
Q 016596 307 DWT--VDMAEGRRRLGPDVAVQGNVDPGAL----FGSKDFITNRINDTVRKAGRWKHIL 359 (386)
Q Consensus 307 d~~--~dl~e~~~~~g~~~~l~G~vd~~~l----~gt~eev~~~v~~~i~~~~~~g~Il 359 (386)
... .+..-+++ .++. +. |..| .+|.+|+...+..+... |....+|
T Consensus 117 ga~~~~n~~LL~~-~a~~-----gk-PV~lk~G~~~s~~e~~~A~e~i~~~-Gn~~i~L 167 (266)
T PRK13398 117 GSRNMQNFELLKE-VGKT-----KK-PILLKRGMSATLEEWLYAAEYIMSE-GNENVVL 167 (266)
T ss_pred CcccccCHHHHHH-HhcC-----CC-cEEEeCCCCCCHHHHHHHHHHHHhc-CCCeEEE
Confidence 543 34333333 3321 11 2222 46999999998776544 4333444
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.04 E-value=40 Score=31.94 Aligned_cols=139 Identities=15% Similarity=0.216 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~ 306 (386)
..+++..+.+..+|.-..+.. ...+ .+ +.++.+.+.+.. .+|+.+|.+-..+ .+....+.|++.+.+
T Consensus 28 avi~AAee~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~-----~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 28 AVVEEAEANNAPAIIAIHPNELDFLG----DN-FFAYVRERAKRS-----PVPFVIHLDHGATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred HHHHHHHHhCCCEEEEeCcchhhhcc----HH-HHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 344455667888776433322 2333 12 455555555443 5899999864333 567778899999988
Q ss_pred CCC-C----CHHHHHH------HhCCCeeE-EecCCc---C-c------cCCCHHHHHHHHHHH-HHHcCCCCeEEecCC
Q 016596 307 DWT-V----DMAEGRR------RLGPDVAV-QGNVDP---G-A------LFGSKDFITNRINDT-VRKAGRWKHILNLGH 363 (386)
Q Consensus 307 d~~-~----dl~e~~~------~~g~~~~l-~G~vd~---~-~------l~gt~eev~~~v~~~-i~~~~~~g~Ils~gc 363 (386)
|.. . +++..++ .+|-.+.. .|-|.- . . ++-+|||+.+.+++. ++.+. .=+++.|
T Consensus 98 D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LA---vaiGt~H 174 (283)
T PRK08185 98 DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLA---VAIGTAH 174 (283)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEE---eccCccc
Confidence 754 2 2333333 33321111 222211 1 1 134888888888775 44431 1123334
Q ss_pred CC-----CCCCcHHHHHHHHHHH
Q 016596 364 GI-----KVGTPEENVAHFFEVA 381 (386)
Q Consensus 364 ~i-----~~~tp~Eni~a~~~a~ 381 (386)
++ .|+..+|.++.+.+++
T Consensus 175 G~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 175 GIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred CCcCCCCCCCcCHHHHHHHHHhh
Confidence 43 3556677777766543
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=82.88 E-value=12 Score=32.51 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCc-c--hHH----HH
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSG-G--LLE----RL 296 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~-~--~l~----~l 296 (386)
++..++.++...++|+|++.+.-+.....+.. .+....+++++.+.+ +. +.|+++... +.. . .+. ..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~--~~~~~~~~~~i~~~~-~~--~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGD--WEEVLEEIAAVVEAA-DG--GLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCC--HHHHHHHHHHHHHHh-cC--CceEEEEEECCCCCCHHHHHHHHHHH
Confidence 45556677778899999998754442211100 366677888888876 32 467777654 222 1 222 23
Q ss_pred HhcCCCEEEcCCC-----CCH---HHHHHHhCC--CeeEEecCC
Q 016596 297 ALTGVDVVSLDWT-----VDM---AEGRRRLGP--DVAVQGNVD 330 (386)
Q Consensus 297 ~e~g~d~l~~d~~-----~dl---~e~~~~~g~--~~~l~G~vd 330 (386)
.+.|++++-.... .|+ .++++.++. .+.+.|+++
T Consensus 139 ~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 139 AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 4678998855332 244 445555542 455566665
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=82.78 E-value=43 Score=31.55 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----cCCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----SGSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----cG~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|.-.-.|+ +-+.-|++++.+. . |++++. +|.. . .+..+.+.+
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~----~~i~~~f~~va~~------~-pi~lYn~P~~tg~~l~~~~l~~l~~~p- 153 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQ----EGLIKHFETVLDM------G-PTIIYNVPGRTGQDIPPEVIFKIAQHP- 153 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCH----HHHHHHHHHHHhh------C-CEEEEEChhHhCcCCCHHHHHHHhcCC-
Confidence 345555667788887776554322332 3334455555552 2 455542 3322 1 234444443
Q ss_pred CEEEc-CCCCCHHHHHHHhCCCeeEEecCC
Q 016596 302 DVVSL-DWTVDMAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 302 d~l~~-d~~~dl~e~~~~~g~~~~l~G~vd 330 (386)
+++.+ +...| ....+..++++.++.|-|
T Consensus 154 ni~giKdss~~-~~~~~~~~~~~~v~~G~d 182 (280)
T PLN02417 154 NFAGVKECTGN-DRVKQYTEKGILLWSGND 182 (280)
T ss_pred CEEEEEeCCCc-HHHHHHhcCCeEEEEccc
Confidence 44444 33345 554444555556655554
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=82.76 E-value=7.2 Score=44.21 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g 300 (386)
.++..+.++.+.++|+|.|.|.|.. +++.|....+ ++..+++.. +.|+-+|++.+... + ..+ .+.|
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~-Gll~P~~~~~--------Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaG 757 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMA-GLLKPAAAKL--------LIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAG 757 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc-CCcCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhC
Confidence 4667788888899999999987655 4688876544 455555544 57899999877652 2 333 4789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+++++.
T Consensus 758 ad~vD~ 763 (1143)
T TIGR01235 758 VDVVDV 763 (1143)
T ss_pred CCEEEe
Confidence 999854
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=82.16 E-value=30 Score=32.38 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC--CCHH--HHHHHhCCCeeEEecCC
Q 016596 255 PVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT--VDMA--EGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 255 p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~--~dl~--e~~~~~g~~~~l~G~vd 330 (386)
|.-|+.+...-++.+.+..++. |.+++.=.+ +...++.+.++ ++++-+... .+.. +.....|.-+.+-=|
T Consensus 67 p~s~~g~g~~gl~~l~~~~~~~--Gl~~~t~~~-d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G-- 140 (260)
T TIGR01361 67 PYSFQGLGEEGLKLLRRAADEH--GLPVVTEVM-DPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRG-- 140 (260)
T ss_pred CccccccHHHHHHHHHHHHHHh--CCCEEEeeC-ChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCC--
Confidence 3346666666666677777776 566443222 22246777788 888876532 3433 333333332222111
Q ss_pred cCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC----CCCCcHHHHHHHHHHHHhhc
Q 016596 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI----KVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 331 ~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i----~~~tp~Eni~a~~~a~~~yg 385 (386)
+.+|++|+...+..+.+. |...++|.- |++ |..-..-|++++....+.|+
T Consensus 141 ---~~~t~~e~~~Ave~i~~~-Gn~~i~l~~-rG~s~y~~~~~~~~dl~~i~~lk~~~~ 194 (260)
T TIGR01361 141 ---MGNTIEEWLYAAEYILSS-GNGNVILCE-RGIRTFEKATRNTLDLSAVPVLKKETH 194 (260)
T ss_pred ---CCCCHHHHHHHHHHHHHc-CCCcEEEEE-CCCCCCCCCCcCCcCHHHHHHHHHhhC
Confidence 146999999999888754 344566632 333 33333456666655544443
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=82.05 E-value=25 Score=32.01 Aligned_cols=128 Identities=9% Similarity=0.072 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHH-hcC-CCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLA-LTG-VDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~-e~g-~d~l~ 305 (386)
.|++.+.++|+|.|.+.--. .+...++++.+|+. |....+-..-++. .+..++ +.. +-+.+
T Consensus 72 ~~i~~~~~~gad~i~~H~Ea-------------~~~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 72 RIIPDFAKAGASMITFHVEA-------------SEHVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHHhCCCEEEEcccC-------------cccHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 56678889999998874221 13567888999997 4566666666654 354444 333 12224
Q ss_pred cCCC-----------CCHHHHHHHhC-----CCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCC
Q 016596 306 LDWT-----------VDMAEGRRRLG-----PDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGT 369 (386)
Q Consensus 306 ~d~~-----------~dl~e~~~~~g-----~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~t 369 (386)
+++. ..+.++++... -.+.+-|||++ + .++++++.+ -.+++++++ -+-.+-
T Consensus 137 V~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~-------e----ni~~l~~aG-Ad~vVvGSa-If~~~d 203 (220)
T PRK08883 137 VNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV-------D----NIREIAEAG-ADMFVAGSA-IFGQPD 203 (220)
T ss_pred ecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH-------H----HHHHHHHcC-CCEEEEeHH-HhCCCC
Confidence 4322 13566666653 22667888854 2 334455443 336666654 122344
Q ss_pred cHHHHHHHHHHHHhhc
Q 016596 370 PEENVAHFFEVAKAIR 385 (386)
Q Consensus 370 p~Eni~a~~~a~~~yg 385 (386)
+.++++.+.+..++.+
T Consensus 204 ~~~~i~~l~~~~~~~~ 219 (220)
T PRK08883 204 YKAVIDEMRAELAKVK 219 (220)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7788888877766543
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=81.90 E-value=23 Score=33.22 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCC----EEEcCCCCCHHHHHHHhCC--CeeEEecCCcCc
Q 016596 261 FSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGVD----VVSLDWTVDMAEGRRRLGP--DVAVQGNVDPGA 333 (386)
Q Consensus 261 f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d----~l~~d~~~dl~e~~~~~g~--~~~l~G~vd~~~ 333 (386)
.=...+++.++..++. +.|+++|+-+... .++.+.+.+.. ++++. ..+.+.+++.+.- .+.+-|.+
T Consensus 108 ~Q~~vf~~ql~lA~e~--~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~f-sG~~~~a~~~~~~G~~is~~g~~---- 180 (265)
T PRK10812 108 RQQESFRHHIQIGREL--NKPVIVHTRDARADTLAILREEKVTDCGGVLHCF-TEDRETAGKLLDLGFYISFSGIV---- 180 (265)
T ss_pred HHHHHHHHHHHHHHHh--CCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEee-cCCHHHHHHHHHCCCEEEECeee----
Confidence 3345667777777776 6899999887766 57888776542 55665 3577777776542 23333222
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC-------CcHHHHHHHHHHH
Q 016596 334 LFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVG-------TPEENVAHFFEVA 381 (386)
Q Consensus 334 l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~-------tp~Eni~a~~~a~ 381 (386)
.+.+.+. ++++++...-.++++.+++..... -.|.++...++.+
T Consensus 181 t~~~~~~----~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~i 231 (265)
T PRK10812 181 TFRNAEQ----LRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYM 231 (265)
T ss_pred ecCccHH----HHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHH
Confidence 2333333 445555554457888888753211 2356666655544
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=81.80 E-value=11 Score=36.68 Aligned_cols=86 Identities=20% Similarity=0.375 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH---HHHhh------HHHHHHHHHHHHhhCCCCcEEEEec
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD---FEEFS------LPYLKQIVDTVKQTHPDLSLILYAS 287 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~---f~ef~------~P~~k~l~~~i~~~~~~~~~~~H~c 287 (386)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||.. =++|. .-+..++++.+++.. +.++.+-+.
T Consensus 137 I~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis 215 (337)
T PRK13523 137 IKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRIS 215 (337)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEec
Confidence 444445555666777889999998864322 3777732 12232 456677888888764 456677655
Q ss_pred C-------Cc-c----hHHHHHhcCCCEEEcC
Q 016596 288 G-------SG-G----LLERLALTGVDVVSLD 307 (386)
Q Consensus 288 G-------~~-~----~l~~l~e~g~d~l~~d 307 (386)
. .. . +...+.+.|+|.+++.
T Consensus 216 ~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs 247 (337)
T PRK13523 216 ASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVS 247 (337)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3 22 1 1355667799998774
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=81.58 E-value=5.6 Score=34.64 Aligned_cols=61 Identities=33% Similarity=0.509 Sum_probs=40.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
++..+++|+|.|++ |.+ ||++ ++++++.+++.++ .+.+-.+|+.+ .+..++++|+|++++.
T Consensus 93 ~~ea~~~g~d~I~l-D~~----~~~~--------~~~~v~~l~~~~~--~v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 93 AEEALEAGADIIML-DNM----SPED--------LKEAVEELRELNP--RVKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHTT-SEEEE-ES-----CHHH--------HHHHHHHHHHHTT--TSEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHhCCCEEEe-cCc----CHHH--------HHHHHHHHhhcCC--cEEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 33455689999885 543 6654 4556666666532 36778888876 4999999999999875
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=81.47 E-value=8.5 Score=43.76 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++..++++.+.++|++.|.|.|.. +++.|....+ ++.++++.. ++|+-+|++-+... + ..+ .+.|+
T Consensus 691 ~~~~~~a~~l~~~Ga~~i~ikDt~-G~l~P~~~~~--------lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGa 760 (1146)
T PRK12999 691 DYYVDLAKELEKAGAHILAIKDMA-GLLKPAAAYE--------LVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGV 760 (1146)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcc-CCCCHHHHHH--------HHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCC
Confidence 556677788888999999887655 4688876544 455555544 57899999887653 2 333 47899
Q ss_pred CEEEcC-----CC---CCHHHHHHHhC
Q 016596 302 DVVSLD-----WT---VDMAEGRRRLG 320 (386)
Q Consensus 302 d~l~~d-----~~---~dl~e~~~~~g 320 (386)
+.++.. .. .+++++...+.
T Consensus 761 d~vD~av~glg~~tgn~~le~vv~~L~ 787 (1146)
T PRK12999 761 DIVDVAVASMSGLTSQPSLNSIVAALE 787 (1146)
T ss_pred CEEEecchhhcCCcCCHHHHHHHHHHH
Confidence 988642 22 35666655553
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=81.33 E-value=10 Score=37.26 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
++.+++++..++|++.|.++|+.+ .+.|..+.+++. .+++.. ++++-+|++-+..+ + ..+ .+.|++
T Consensus 143 ~l~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv~--------~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa~ 212 (365)
T TIGR02660 143 FLVELAEVAAEAGADRFRFADTVG-ILDPFSTYELVR--------ALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGAT 212 (365)
T ss_pred HHHHHHHHHHHcCcCEEEEcccCC-CCCHHHHHHHHH--------HHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 334445556678999999988776 578888776553 333322 36889999988753 2 333 467988
Q ss_pred EEEc-----CC---CCCHHHHHHHh
Q 016596 303 VVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 303 ~l~~-----d~---~~dl~e~~~~~ 319 (386)
.++. .+ ..+++++.-.+
T Consensus 213 ~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 213 HVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred EEEEEeeccccccccCCHHHHHHHH
Confidence 7742 22 25676665544
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=81.18 E-value=16 Score=35.52 Aligned_cols=89 Identities=24% Similarity=0.380 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCC----cCCCCHHHH---HHhh------HHHHHHHHHHHHhhC-CCCcEE
Q 016596 218 HALLRKFTTSMAKYVQYQADNGAQAVQIFDSW----ATELSPVDF---EEFS------LPYLKQIVDTVKQTH-PDLSLI 283 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f---~ef~------~P~~k~l~~~i~~~~-~~~~~~ 283 (386)
.+-++.+.+...+.++...++|.|+|-|.-.- ..|+||..= +||. .-+..++++++++.- ++.++.
T Consensus 141 ~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 141 EEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 34455566666667777889999999875322 136776421 1222 445567777777653 245677
Q ss_pred EEec-------CCc---c--hHHHHHhcCCCEEEc
Q 016596 284 LYAS-------GSG---G--LLERLALTGVDVVSL 306 (386)
Q Consensus 284 ~H~c-------G~~---~--~l~~l~e~g~d~l~~ 306 (386)
+-+. |.. . ++..+.+.|+|.+++
T Consensus 221 vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev 255 (338)
T cd04733 221 IKLNSADFQRGGFTEEDALEVVEALEEAGVDLVEL 255 (338)
T ss_pred EEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 7664 222 1 246777889999884
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.73 E-value=5 Score=38.76 Aligned_cols=81 Identities=11% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHHh--cCCCEEEcCCCC-------C-HHHHHH
Q 016596 252 ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLAL--TGVDVVSLDWTV-------D-MAEGRR 317 (386)
Q Consensus 252 ~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~e--~g~d~l~~d~~~-------d-l~e~~~ 317 (386)
.++++.+.+|+...-.... ..+.+ +-|-.. .++.+.+ .|+|++-+|... + ++++|+
T Consensus 78 ~~~~e~~~~fv~~~~~~~~---------~~~~v-avG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 78 HYSVEEWAAFVNNSSADVL---------KHVMV-STGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred CCCHHHHHHHHHhcccccc---------ceEEE-EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 5789998888764211111 12233 444331 4677777 489998877542 2 789999
Q ss_pred HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 318 RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 318 ~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
.+++...+.||| .|+| .++.+++.+
T Consensus 148 ~~P~~~vIaGNV------~T~e----~a~~Li~aG 172 (346)
T PRK05096 148 AWPDKTICAGNV------VTGE----MVEELILSG 172 (346)
T ss_pred hCCCCcEEEecc------cCHH----HHHHHHHcC
Confidence 999888899998 4455 445566654
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.65 E-value=7.8 Score=36.55 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-h-HHHHHhcCCC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-L-LERLALTGVD 302 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~-l~~l~e~g~d 302 (386)
.+-.++-++++.|+|||+||. .++-|+++|++|.. +++ .| .++.+-.-|.+. + .+.|.++|+.
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~----~al~~~e~i~~f~~--------av~--~p-l~~N~t~~g~tp~~~~~~L~~~Gv~ 229 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFP----EALTDLEEIRAFAE--------AVP--VP-LPANITEFGKTPLLTVAELAELGVK 229 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEcc----ccCCCHHHHHHHHH--------hcC--CC-eeeEeeccCCCCCcCHHHHHhcCce
Confidence 677778889999999999883 33456888887653 443 11 455666667766 3 6999999999
Q ss_pred EEEcCC
Q 016596 303 VVSLDW 308 (386)
Q Consensus 303 ~l~~d~ 308 (386)
.+++..
T Consensus 230 ~V~~~~ 235 (289)
T COG2513 230 RVSYGL 235 (289)
T ss_pred EEEECc
Confidence 988764
|
|
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=80.53 E-value=47 Score=30.94 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc
Q 016596 222 RKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG 290 (386)
Q Consensus 222 ~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~ 290 (386)
+...+.+.+.++...+.|++.+.+.-.....-+.+...+.+...++++.+.+++. |+.+.++.++..
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~--gi~l~lEn~~~~ 147 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETK--GVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCC--CCEEEEeCCCCC
Confidence 3344555666667778899987663332222456666677788999999998876 678888877653
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=80.28 E-value=76 Score=33.41 Aligned_cols=145 Identities=13% Similarity=0.185 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec-----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--------
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFD-----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG-------- 290 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d-----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~-------- 290 (386)
-++-.++.++.+.++|.+.|=+.. ..-.+++++-|+. ++++-+.+ ++.++..++-|..
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~-----l~~l~~~~----~~~~l~~L~Rg~N~~G~~~yp 89 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWER-----LRELKKAL----PNTPLQMLLRGQNLLGYRHYA 89 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHH-----HHHHHHhC----CCCEEEEEEccccccccccCc
Confidence 455566677788888988776531 1124788775442 33333333 3456666654421
Q ss_pred ----c-hHHHHHhcCCCEEEc-CCCCCHHHHH------HHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 291 ----G-LLERLALTGVDVVSL-DWTVDMAEGR------RRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 291 ----~-~l~~l~e~g~d~l~~-d~~~dl~e~~------~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
. .++...+.|+|++.+ +...|...++ +..|. .+.+++.-..- ..|++.+.+.++++.+.+.+ .+
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad-~I 166 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA--HAQGTISYTTSPVHTLETYLDLAEELLEMGVD-SI 166 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EE
Confidence 1 246667889998855 3333333222 23343 44454432222 46789998888888775323 33
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.| |+...-..|+.+..+++++++
T Consensus 167 ~i---~Dt~G~~~P~~v~~lv~~lk~ 189 (582)
T TIGR01108 167 CI---KDMAGILTPKAAYELVSALKK 189 (582)
T ss_pred EE---CCCCCCcCHHHHHHHHHHHHH
Confidence 33 455555667778888888875
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=28 Score=31.67 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=55.8
Q ss_pred HHHHHHHHhC-CCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC
Q 016596 230 KYVQYQADNG-AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW 308 (386)
Q Consensus 230 ~~~~~~~e~G-~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~ 308 (386)
+.++..++.| ++.|++-+.. ++.+.+.+.+ +++.+.++++ |++++++- .++.-.++|.|++|+.+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~---l~~~~~~~~a----~~l~~l~~~~--gv~liINd-----~~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYG---LDEATFQKQA----EKLVPVIQEA--GAAALIAG-----DSRIAGRVKADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCC---CCHHHHHHHH----HHHHHHHHHh--CCEEEEeC-----HHHHHHHhCCCEEEECc
Confidence 4455677889 6999986544 5666665544 4555566665 56777663 35666788999999976
Q ss_pred C-CCHHHHHHHhCCCe
Q 016596 309 T-VDMAEGRRRLGPDV 323 (386)
Q Consensus 309 ~-~dl~e~~~~~g~~~ 323 (386)
. .++.++++.+|.+.
T Consensus 96 ~d~~~~~~r~~~~~~~ 111 (221)
T PRK06512 96 NLAALAEAIEKHAPKM 111 (221)
T ss_pred cccCHHHHHHhcCCCC
Confidence 4 57899999887553
|
|
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=80.16 E-value=41 Score=33.71 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=93.3
Q ss_pred CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 016596 157 EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQA 236 (386)
Q Consensus 157 ~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~ 236 (386)
.+|++.+.+++++..++.|..+-...+++++.+ .+ .+.++...
T Consensus 192 ~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~~~---em----------------------------------~~ra~~~~ 234 (412)
T TIGR03326 192 EERVEKLYKVRDKVEAETGERKEYLANITAPVR---EM----------------------------------ERRAELVA 234 (412)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEEecCCHH---HH----------------------------------HHHHHHHH
Confidence 356778888999999998876555566665521 11 12233455
Q ss_pred HhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc----------c-h-HHHH-HhcCCCE
Q 016596 237 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG----------G-L-LERL-ALTGVDV 303 (386)
Q Consensus 237 e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~----------~-~-l~~l-~e~g~d~ 303 (386)
++|++.+++.--+.++ + .++.+.+..... +.++..|-.+.- . . +-.| .=.|+|.
T Consensus 235 ~~G~~~~mv~~~~~G~-~----------~l~~l~~~~~~~--~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ 301 (412)
T TIGR03326 235 DLGGQYVMVDVVVCGW-S----------ALQYIRELTEDL--GLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQ 301 (412)
T ss_pred HhCCCeEEEEeeccch-H----------HHHHHHHhhccC--CeEEEEcCCcccccccCCCCcCcHHHHHHHHHHcCCCe
Confidence 6799988764333332 2 122233221111 456666655431 1 1 2222 3358888
Q ss_pred EEcCCC------CCHH---HHHHHhCCCeeEEecCCcCcc--C--CCHHHHHHHHHHHHHHcCCCCeEEecCCCC--CCC
Q 016596 304 VSLDWT------VDMA---EGRRRLGPDVAVQGNVDPGAL--F--GSKDFITNRINDTVRKAGRWKHILNLGHGI--KVG 368 (386)
Q Consensus 304 l~~d~~------~dl~---e~~~~~g~~~~l~G~vd~~~l--~--gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--~~~ 368 (386)
+++... .+-+ .+.+.+-.. +|++.+..- . -++. .+.++++..| .-+|+..|-++ -|+
T Consensus 302 ~~~~t~~~Gk~~~~~~~~~~~~~~~~~~---~~~~k~~~Pv~sGG~~~~----~vp~~~~~~G-~Dvil~~GGGi~gHp~ 373 (412)
T TIGR03326 302 LHTGTAGVGKLEGGKEDTKQINDFLRQK---WHHIKPVFPVSSGGLHPG----LVPPLIDALG-KDLVIQAGGGVHGHPD 373 (412)
T ss_pred eeeCCCccCCCCCCHHHHHHHHHHHhCc---ccCCCCceEecCCCCChh----HHHHHHHhcC-CceEEecCCccccCCC
Confidence 866433 1222 333333221 566666542 2 1233 3345566666 35888888887 467
Q ss_pred CcHHHHHHHHHHHHh
Q 016596 369 TPEENVAHFFEVAKA 383 (386)
Q Consensus 369 tp~Eni~a~~~a~~~ 383 (386)
-+.+..+|+.+++..
T Consensus 374 G~~aGa~A~rqA~ea 388 (412)
T TIGR03326 374 GPRAGAKALRAAIDA 388 (412)
T ss_pred ChhhHHHHHHHHHHH
Confidence 888999999887654
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=58 Score=31.65 Aligned_cols=131 Identities=13% Similarity=0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcC----CCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTG----VDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g----~d~l~ 305 (386)
+.++.+.+.|+|.|=++-|. .|++.|+ ..++|.+...- ..+..+..++-.....++.-.+++ ...++
T Consensus 58 ~IA~~L~~lGVd~IEvG~Pa---~s~~e~e-----~ir~I~~~~~~-~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vh 128 (333)
T PRK14847 58 RLFEQLVAVGLKEIEVAFPS---ASQTDFD-----FVRKLIDERRI-PDDVTIEALTQSRPDLIARTFEALAGSPRAIVH 128 (333)
T ss_pred HHHHHHHHcCCCEEEeeCCC---CCHHHHH-----HHHHHHHhCCC-CCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEE
Confidence 45666778999988765555 6777765 34445443210 001222333322222334444443 34455
Q ss_pred cCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCC-----C--eEEecCCCCCCCCcHHHHHHHH
Q 016596 306 LDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRW-----K--HILNLGHGIKVGTPEENVAHFF 378 (386)
Q Consensus 306 ~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~-----g--~Ils~gc~i~~~tp~Eni~a~~ 378 (386)
+.-.++---++.++ ..|.+++.+.+.++++.+... | +.+.-+..=...++++.+..++
T Consensus 129 i~~p~Sd~h~~~kl---------------~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~ 193 (333)
T PRK14847 129 LYNPIAPQWRRIVF---------------GMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVC 193 (333)
T ss_pred EEecCCHHHHHHHh---------------CCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHH
Confidence 54444444444444 356788888888888776521 2 3455555545678899998888
Q ss_pred HHHHhh
Q 016596 379 EVAKAI 384 (386)
Q Consensus 379 ~a~~~y 384 (386)
+++.+.
T Consensus 194 ~~a~~~ 199 (333)
T PRK14847 194 DAVSAI 199 (333)
T ss_pred HHHHHH
Confidence 877543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 386 | ||||
| 1j93_A | 353 | Crystal Structure And Substrate Binding Modeling Of | 0.0 | ||
| 3cyv_A | 354 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 2e-68 | ||
| 4exq_A | 368 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 7e-61 | ||
| 2eja_A | 338 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 2e-56 | ||
| 3gw0_A | 367 | Urod Mutant G318r Length = 367 | 7e-55 | ||
| 1uro_A | 367 | Uroporphyrinogen Decarboxylase Length = 367 | 7e-55 | ||
| 3gw3_A | 367 | Human Urod Mutant K297n Length = 367 | 1e-54 | ||
| 1jph_A | 388 | Ile260thr Mutant Of Human Urod, Human Uroporphyrino | 2e-54 | ||
| 3gvv_A | 367 | Single-Chain Urod Y164g (Gy) Mutation Length = 367 | 2e-54 | ||
| 1r3w_A | 367 | Uroporphyrinogen Decarboxylase Y164f Mutant In Comp | 2e-54 | ||
| 1r3r_A | 367 | Uroporphyrinogen Decarboxylase With Mutation D86n L | 2e-54 | ||
| 1r3v_A | 367 | Uroporphyrinogen Decarboxylase Single Mutant D86e I | 2e-54 | ||
| 1jpi_A | 388 | Phe232leu Mutant Of Human Urod, Human Uroporphyrino | 4e-54 | ||
| 1r3s_A | 367 | Uroporphyrinogen Decarboxylase Single Mutant D86g I | 5e-54 | ||
| 1jpk_A | 388 | Gly156asp Mutant Of Human Urod, Human Uroporphyrino | 5e-54 | ||
| 2q71_A | 356 | Uroporphyrinogen Decarboxylase G168r Single Mutant | 5e-54 | ||
| 2inf_A | 359 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 6e-52 | ||
| 4ay7_A | 348 | Methyltransferase From Methanosarcina Mazei Length | 3e-07 | ||
| 4ay8_A | 348 | Semet-Derivative Of A Methyltransferase From M. Maz | 1e-05 |
| >pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The Uroporphyrinogen-Iii Decarboxylase From Nicotiana Tabacum: Implications For The Catalytic Mechanism Length = 353 | Back alignment and structure |
|
| >pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Shigella Flexineri: New Insights Into Its Catalytic Mechanism Length = 354 | Back alignment and structure |
|
| >pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd) From Burkholderia Thailandensis E264 Length = 368 | Back alignment and structure |
|
| >pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Aquifex Aeolicus Length = 338 | Back alignment and structure |
|
| >pdb|3GW0|A Chain A, Urod Mutant G318r Length = 367 | Back alignment and structure |
|
| >pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase Length = 367 | Back alignment and structure |
|
| >pdb|3GW3|A Chain A, Human Urod Mutant K297n Length = 367 | Back alignment and structure |
|
| >pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 | Back alignment and structure |
|
| >pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation Length = 367 | Back alignment and structure |
|
| >pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex With Coproporphyrinogen-Iii Length = 367 | Back alignment and structure |
|
| >pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n Length = 367 | Back alignment and structure |
|
| >pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In Complex With Coproporphyrinogen-I Length = 367 | Back alignment and structure |
|
| >pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 | Back alignment and structure |
|
| >pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In Complex With Coproporphyrinogen-I Length = 367 | Back alignment and structure |
|
| >pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 | Back alignment and structure |
|
| >pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme In Complex With Coproporphyrinogen-Iii Length = 356 | Back alignment and structure |
|
| >pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Bacillus Subtilis Length = 359 | Back alignment and structure |
|
| >pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei Length = 348 | Back alignment and structure |
|
| >pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Length = 353 | Back alignment and structure |
|---|
Score = 546 bits (1409), Expect = 0.0
Identities = 300/353 (84%), Positives = 336/353 (95%)
Query: 34 TVAEPKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVD 93
TVAEPK ++ +P+LL AVRG++VERPPVWLMRQAGRYMKSYQ++CEKYP FR+RSENVD
Sbjct: 1 TVAEPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVD 60
Query: 94 LVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVRE 153
LVVEISLQPW VF+PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDP+ T A+V++VRE
Sbjct: 61 LVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVRE 120
Query: 154 FDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQ 213
F PE+SVPYVG+ALTILR+EVNN+AAVLGFVGAPFTLASYVVEGGSSK+F+KIKRLAF++
Sbjct: 121 FIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAE 180
Query: 214 PKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTV 273
PKVLHALL+KF TSMAKY++YQAD+GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+V
Sbjct: 181 PKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSV 240
Query: 274 KQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGA 333
K THP+L LILYASGSGGLLERL LTGVDVVSLDWTVDMA+GRRRLGP+VA+QGNVDPG
Sbjct: 241 KLTHPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGV 300
Query: 334 LFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
LFGSK+FITNRINDTV+KAG+ KHILNLGHGIKVGTPEEN AHFFE+AK +RY
Sbjct: 301 LFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 353
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Length = 354 | Back alignment and structure |
|---|
Score = 511 bits (1318), Expect = 0.0
Identities = 133/340 (39%), Positives = 197/340 (57%), Gaps = 3/340 (0%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A+ + V+ PVW+MRQAGRY+ Y+ + F +N +L E++LQP +
Sbjct: 9 YLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYP 68
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D ILFSDILT M + G+GP P+ A+VD++ DPE+ + YV A+
Sbjct: 69 LDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAV 128
Query: 168 TILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS 227
+R E+ E ++GF G+P+TLA+Y+VEGGSSK F+ IK++ ++ P+ LHALL K S
Sbjct: 129 RTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKS 188
Query: 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILY 285
+ Y+ Q GAQAV IFD+W L+ D+++FSL Y+ +IVD + + + + L+
Sbjct: 189 VTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLF 248
Query: 286 ASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345
G G LE +A TG D + LDWT D+A+ RRR+G VA+QGN+DP L+ I +
Sbjct: 249 TKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEV 308
Query: 346 NDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAKAI 384
+ G + H+ NLGHGI P E+ F E +
Sbjct: 309 ATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRL 348
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Length = 359 | Back alignment and structure |
|---|
Score = 497 bits (1281), Expect = e-177
Identities = 116/336 (34%), Positives = 176/336 (52%), Gaps = 6/336 (1%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
LKA RGE + PVW MRQAGR Y+ + EKY F E + +L ++ P +
Sbjct: 17 FLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLF-EITHQPELCAYVTRLPVEQYG 75
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D IL+ DI+TPL + + +I G GPVI PI + A+++++ + DPE+ VPYV + +
Sbjct: 76 VDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPYVLETI 135
Query: 168 TILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTS 227
+L E N ++GF GAPFTLASY+ EGG SK+++K K +S P + L+ K
Sbjct: 136 KLLVNEQLN-VPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADM 194
Query: 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS 287
+ YV+ Q GA+A+QIFDSW L+ D+ + P + +I + ++ LI++
Sbjct: 195 IIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELA--KENVPLIMFGV 252
Query: 288 GSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRIND 347
G+ L +DVV LDW + + E R + G VQGN+DP L + I + +
Sbjct: 253 GASHLAGDWHDLPLDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKE 311
Query: 348 TVRKAGRWK-HILNLGHGIKVGTPEENVAHFFEVAK 382
+ + I NLGHG+ E +
Sbjct: 312 ILDQGMESDGFIFNLGHGVFPDVSPEVLKKLTAFVH 347
|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Length = 368 | Back alignment and structure |
|---|
Score = 495 bits (1278), Expect = e-177
Identities = 126/340 (37%), Positives = 188/340 (55%), Gaps = 8/340 (2%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A+ E + P+WLMRQAGRY+ Y + SF +++ D E++LQP F
Sbjct: 14 FLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFP 73
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKAL 167
D ILFSDILT M + D G+GP P+ T+A+V ++ D ++ YV A+
Sbjct: 74 LDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAV 133
Query: 168 TILREEVNN-----EAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLR 222
+R + + ++GF G+P+TLA Y+VEGG S F +K +A+++P ++H +L
Sbjct: 134 REIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAYARPDLMHRILD 193
Query: 223 KFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS- 281
++A Y+ Q + GAQAV IFD+W L+ ++ FSL Y++++V +K+ H
Sbjct: 194 VNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARV 253
Query: 282 -LILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDF 340
I + G G LE LA TGVD V LDWTV++ R R+ VA+QGN+DP LF +
Sbjct: 254 PAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEA 313
Query: 341 ITNRINDTVRKAGRWK-HILNLGHGIKVGTPEENVAHFFE 379
I + G H+ NLGHGI TP E+VA +
Sbjct: 314 IRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVD 353
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Length = 367 | Back alignment and structure |
|---|
Score = 488 bits (1258), Expect = e-174
Identities = 113/341 (33%), Positives = 184/341 (53%), Gaps = 7/341 (2%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A GE+ + PVW MRQAGRY+ ++ F + + E++LQP F
Sbjct: 19 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 77
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP-EESVPYVGKA 166
D I+FS IL + + ++ GKGP +P+ + +++++R+ + + YV +A
Sbjct: 78 LDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 137
Query: 167 LTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTT 226
+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+ H LLR T
Sbjct: 138 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 197
Query: 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS----- 281
++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK +
Sbjct: 198 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 257
Query: 282 LILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI 341
+I++A LE LA G +VV LDWTV + R +G V +QGN+DP AL+ S++ I
Sbjct: 258 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 317
Query: 342 TNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382
+ + G ++I NLGHG+ E+V F +
Sbjct: 318 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVH 358
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Length = 338 | Back alignment and structure |
|---|
Score = 477 bits (1231), Expect = e-170
Identities = 120/347 (34%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 38 PKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVE 97
PKN +LL+++RGE + R PVWLMRQAGRYM Y+ I + +F E +NVDL E
Sbjct: 2 PKN-----DLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATE 56
Query: 98 ISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPE 157
ISL P + D +I+FSDIL PL + + + ++G+GP + +V ++++DP
Sbjct: 57 ISLLPLKILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSG----KVSDLKKYDPS 112
Query: 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVL 217
+ YV + + ++E +E V+GF GAPFTL SY++EGG+SK F K + PK
Sbjct: 113 Q-NAYVYEIIKRVKEA-QDEVPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEY 170
Query: 218 HALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH 277
L+ T ++ Y++ Q GA VQIFDSW LS D+ E+ PY+ ++ +K
Sbjct: 171 KRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKD-F 229
Query: 278 PDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGS 337
D +I + GS ++ D +S+DW+VD+ E + QGN++P L+ S
Sbjct: 230 SDTPVIYFFRGSSSFIDLAVDYRADALSVDWSVDIPELFKIYD--KGFQGNLEPAVLYAS 287
Query: 338 KDFITNRINDTVRKAG-RWKHILNLGHGIKVGTPEENVAHFFEVAKA 383
++ I + +R+ + +++ NLGHG+ E V + ++ K+
Sbjct: 288 EEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKS 334
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-05
Identities = 59/366 (16%), Positives = 107/366 (29%), Gaps = 109/366 (29%)
Query: 55 EDVERPPV-WLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVIL 113
E+V R +LM + ++ Y R+R N + V ++V + +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLK 139
Query: 114 FSDILTPL-SGMNIPFDIIKG-KGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILR 171
L L N+ +I G G GK T +
Sbjct: 140 LRQALLELRPAKNV---LIDGVLG---------------------------SGK--TWVA 167
Query: 172 EEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQ---PKVLHALLRKFTTSM 228
+V SY V+ K KI L P+ + +L+K +
Sbjct: 168 LDV---------------CLSYKVQ---CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQ---IVDTVKQTHP------D 279
++D+ + S EL + ++ V+ + +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQ--NAKAWNAFN 263
Query: 280 LSL-ILYASGSGGLLERLALTGVDVVSLD---WTVDMAEGRRRLG----------PDVAV 325
LS IL + + + L+ +SLD T+ E + L P +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 326 QGNVDPG--ALFGS--KDFITNRINDTVRKAGRWKHILN--LGHGIKVG----TPEENVA 375
N P ++ +D + + WKH+ L I+ P E
Sbjct: 324 TTN--PRRLSIIAESIRDGL-ATWD-------NWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 376 HFFEVA 381
F ++
Sbjct: 374 MFDRLS 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 46/365 (12%), Positives = 90/365 (24%), Gaps = 89/365 (24%)
Query: 56 DVERPPVWLMRQAGRYMKSYQIICEKYPSFRERS----ENVDLVVEISL-QPWHVFKPD- 109
+V+ W ++ + C+ + R + + ISL PD
Sbjct: 252 NVQNAKAW---------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 110 GVILFSDILT------PLSGMNI-PFDIIKGKGPVIFDPINT-----DAEVDQVRE---- 153
L L P + P + I D + T D++
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 154 ----FDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRL 209
+P E L++ + +L + F + V K L
Sbjct: 362 SLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIW--FDVIKSDVM-VVVNKLHK-YSL 416
Query: 210 AFSQPK----VLHALLRKFTTSMAKYV--------QYQADNGAQAVQIFDSWATELSPVD 257
QPK + ++ + + Y FDS +D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT------FDSDDLIPPYLD 470
Query: 258 --FEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEG 315
F + + H L I + L + L + + +
Sbjct: 471 QYFYSH-IGH-----------H--LKNIEHP-ERMTLFRMVFL------DFRF---LEQK 506
Query: 316 RRRLGPDVAVQGNVDP--GALFGSKDFITNRINDTVRKAGRWKHIL-NLGHGIKVGTPEE 372
R G++ L K +I + R L + + + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYT 565
Query: 373 NVAHF 377
++
Sbjct: 566 DLLRI 570
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 100.0 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 100.0 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 100.0 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 100.0 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 100.0 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 100.0 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 100.0 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.73 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.72 | |
| 1ypx_A | 375 | Putative vitamin-B12 independent methionine synth | 99.68 | |
| 3rpd_A | 357 | Methionine synthase (B12-independent); structural | 99.57 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.39 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.33 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.31 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 99.18 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 97.53 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 96.56 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 95.93 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.81 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.55 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 95.52 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 94.67 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 93.78 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 93.55 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.43 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 93.33 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 93.16 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 93.11 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 93.0 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 92.81 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 92.59 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 92.5 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.47 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 92.46 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 92.4 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.2 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 92.16 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 91.6 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 91.22 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 91.2 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 91.15 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 91.0 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 90.96 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 90.8 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 90.64 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 90.63 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 90.38 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 90.28 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 90.1 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 90.01 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 89.94 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 89.91 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 89.69 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 89.68 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 89.67 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 89.1 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 89.05 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 88.99 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 88.98 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 88.44 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 88.35 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 88.3 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 88.22 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 87.86 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 87.8 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 87.77 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 87.74 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 87.59 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 87.56 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 87.36 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 87.15 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 86.89 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 86.88 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 86.83 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 86.78 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 86.54 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 86.38 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 86.32 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 86.24 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 86.23 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 85.95 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 85.76 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 85.7 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 85.68 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 85.61 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 85.57 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 85.57 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 85.48 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 85.44 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 85.13 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 85.12 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 85.05 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 84.98 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 84.95 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 84.85 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 84.36 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 84.06 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 83.88 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 83.83 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 83.77 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 83.67 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 83.54 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 83.52 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 83.42 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 83.39 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 83.2 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 83.16 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 83.11 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 83.07 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 82.85 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 82.85 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 82.66 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 82.55 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 82.42 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 82.32 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 82.09 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 81.95 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 81.84 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 81.79 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 81.67 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 81.67 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 81.65 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 81.55 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 81.47 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 81.28 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 81.28 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 81.09 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 81.02 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 80.89 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 80.74 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 80.71 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 80.67 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 80.49 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 80.42 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 80.28 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 80.16 |
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-78 Score=590.77 Aligned_cols=348 Identities=36% Similarity=0.647 Sum_probs=327.2
Q ss_pred CCCCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccc
Q 016596 38 PKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDI 117 (386)
Q Consensus 38 ~~~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~ 117 (386)
..|++.|+||+++|++||++||+|||+|+|||+|+|+|+.++++..+|.|+|.|||+++|++++++++|++|++++++|+
T Consensus 4 ~~~~~~~~~r~l~al~ge~~dr~Pvw~mrqaGr~lpey~~~r~~~~~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~fsDi 83 (368)
T 4exq_A 4 SMAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDI 83 (368)
T ss_dssp CSSSCBSCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHSSHHHHHHSHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred ccCCcccchHHHHHHcCCCCCCCCEEeeHhhhhccHHHHHHHhcCCCHHHHHcCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence 45889999999999999999999999999999999999999988756999999999999999999999999999999999
Q ss_pred ccccccCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCC-----ceeEEeecCcHHHHHH
Q 016596 118 LTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNN-----EAAVLGFVGAPFTLAS 192 (386)
Q Consensus 118 ~~~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~-----~~~v~~~~~gPft~a~ 192 (386)
.+++++||+++.|.++.+|++.+||++.+|+++|+.++++++++.++++++++++++++ ++|++|+++||||+++
T Consensus 84 ~~~~ea~G~~v~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla~ 163 (368)
T 4exq_A 84 LTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLAC 163 (368)
T ss_dssp THHHHHTTTCEEC----CCEESSCCCSHHHHHTCCCCCHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHHH
T ss_pred chhHHHcCCeEEeCCCCCCCCCCCCCCHHHHHhccCCChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHHH
Confidence 99999999999999988998888999999999998887766899999999999999998 8999999999999999
Q ss_pred HHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHH
Q 016596 193 YVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDT 272 (386)
Q Consensus 193 ~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~ 272 (386)
++++|+++++|++++++|+++||.+|++|+++++.+++|+++++++|+|+|+++|+|+++|||++|+||++||+|++++.
T Consensus 164 ~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~ 243 (368)
T 4exq_A 164 YMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQ 243 (368)
T ss_dssp HHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHT
T ss_pred HHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHH
Confidence 99998788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC--CCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHH
Q 016596 273 VKQTHP--DLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVR 350 (386)
Q Consensus 273 i~~~~~--~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~ 350 (386)
+++.++ ++|+++|+||...+++.+.++|+|++++|+.+|+.++++++|++++|+||+||..|+||+|+|+++|+++|+
T Consensus 244 l~~~~~g~~~pvi~f~~g~~~~l~~l~~~g~d~i~~d~~~dl~~ak~~~g~~~~l~Gnldp~~L~gt~e~I~~~v~~~l~ 323 (368)
T 4exq_A 244 LKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLD 323 (368)
T ss_dssp SCCEETTEECCEEEEETTCGGGHHHHHTSSCSEEECCTTSCHHHHHHHHTTSSEEEEEECGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEcCCcHHHHHHHHHhCCCEEeeCCCCCHHHHHHHhCCCEEEEECCCHHHhCCCHHHHHHHHHHHHH
Confidence 987532 378888888876679999999999999999999999999999999999999998779999999999999999
Q ss_pred HcC-CCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 351 KAG-RWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 351 ~~~-~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
.++ ++||||++||+++++||+||++||+++||+||
T Consensus 324 ~~g~~~g~I~n~Ghgi~p~tp~Env~a~veav~~~~ 359 (368)
T 4exq_A 324 SYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRHS 359 (368)
T ss_dssp HHCSCSCEEEEESSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHHhC
Confidence 988 68999999999999999999999999999997
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-74 Score=561.69 Aligned_cols=347 Identities=33% Similarity=0.590 Sum_probs=326.3
Q ss_pred CCCCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccc
Q 016596 38 PKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDI 117 (386)
Q Consensus 38 ~~~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~ 117 (386)
++||+.++||+++|++||++||+|||+++|+|+|+|+|..++.+++ |.++|.||+++++++++++++|++|++++++|+
T Consensus 9 ~~Mt~~~~er~~~a~~ge~~dr~Pvw~mrqagr~lpey~~~~~~~~-~~e~~~~pe~~~e~~l~~~~~~~~D~~~~~~di 87 (367)
T 1r3s_A 9 QGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQD-FFSTCRSPEACCELTLQPLRRFPLDAAIIFSGI 87 (367)
T ss_dssp --CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSC-HHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred hhcCcchhHHHHHHHcCCCCCCCceehhhhcCcccHHHHHHhcCCC-HHHHhCCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence 5799999999999999999999999999999999999999998885 999999999999999999999999999999999
Q ss_pred ccccccCCceEEecCCCCCccCCCCCChHHHhccCCC-CCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHc
Q 016596 118 LTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREF-DPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVE 196 (386)
Q Consensus 118 ~~~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~-d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~ 196 (386)
.+++++||+++.+.++.+|++.+||++.+|+++|+.+ ++.++++.++++++++++++++++|++++++||||++++++.
T Consensus 88 ~~~~~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~~l~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~e 167 (367)
T 1r3s_A 88 LVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVE 167 (367)
T ss_dssp THHHHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHH
T ss_pred cccHHHcCCeEEeCCCCCCCcCCCCCCHHHHHhccCCCCchhhhhHHHHHHHHHHHHcCCCccEEEEcCcHHHHHHHHHc
Confidence 9999999999999988788888899999999999876 666789999999999999999889999999999999999996
Q ss_pred CCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHH-h
Q 016596 197 GGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVK-Q 275 (386)
Q Consensus 197 g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~-~ 275 (386)
||++++|++++++++++||.+|++|+++++.+++++++++++|+|+|+++|+|+++|||++|+||++||+|++++.++ +
T Consensus 168 gg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~ 247 (367)
T 1r3s_A 168 GGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKAR 247 (367)
T ss_dssp SSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 666788999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred hCC----CCcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH
Q 016596 276 THP----DLSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK 351 (386)
Q Consensus 276 ~~~----~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~ 351 (386)
..+ ++|+++|+||+..+++.+.++|+|++++|+.+|+.++++++|++++++||+||..|.||+|+|+++|+++|+.
T Consensus 248 ~~~~g~~~~p~i~~~~G~~~~l~~l~~~g~d~i~~d~~~dl~~a~~~~g~~~~l~Gnldp~~L~gt~e~i~~~v~~~l~~ 327 (367)
T 1r3s_A 248 LREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDD 327 (367)
T ss_dssp HHHTTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHH
T ss_pred hccccCCCCCeEEEcCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHcCCCeEEEeCCChHHhcCCHHHHHHHHHHHHHH
Confidence 511 3789999999955899999999999999999999999999999999999999976799999999999999999
Q ss_pred cCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 352 AGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 352 ~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++++||||++||+++++||+||++||++++++||
T Consensus 328 ~g~~g~I~~~ghgi~~~~p~env~a~v~~v~~~~ 361 (367)
T 1r3s_A 328 FGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS 361 (367)
T ss_dssp HCSSSEEEEESSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCeeecCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7667999999999999999999999999999986
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-72 Score=544.91 Aligned_cols=345 Identities=38% Similarity=0.683 Sum_probs=321.6
Q ss_pred CCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc
Q 016596 40 NVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119 (386)
Q Consensus 40 ~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~ 119 (386)
|+++|+||+++|++||++||+|||+++|+|+|+|+|..++.++++|.+++.||+++++++++++++|++|++++++|+.+
T Consensus 1 ~~~~~~er~~~a~~g~~~dr~Pv~~mrqagr~~pey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~ 80 (354)
T 3cyv_A 1 MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILT 80 (354)
T ss_dssp --CCCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTH
T ss_pred CCCCchHHHHHHHcCCCCCCCCeeehhhhccccHHHHHHHhccCCHHHHHcCHHHHHHHHHHHHHHhCCCEEeecccccc
Confidence 45678999999999999999999999999999999999998874599999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCC
Q 016596 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGS 199 (386)
Q Consensus 120 ~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~ 199 (386)
++++||+++.+.++.+|++.+||++.+|+++|+++++.++++.++++++++++++++++|++++++||||+++++++|++
T Consensus 81 ~~~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~~~~~~~~~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~ 160 (354)
T 3cyv_A 81 VPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGS 160 (354)
T ss_dssp HHHTTTSCEEECSSSCEEESSCCCSHHHHHTCCCCCTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred cHHHcCCeEEeCCCCCCccCCCCCCHHHHHhcCCCChhhhHHHHHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCC
Confidence 99999999999988789888899999999999866777899999999999999998889999999999999999998777
Q ss_pred chhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC--
Q 016596 200 SKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-- 277 (386)
Q Consensus 200 ~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-- 277 (386)
+++|++++++++++||.+|++++++++.+++++++++++|+|+|+++|+|++++||++|+||++||+|++++.+++.+
T Consensus 161 ~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~ 240 (354)
T 3cyv_A 161 SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDG 240 (354)
T ss_dssp CSSCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETT
T ss_pred CccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred CCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CC
Q 016596 278 PDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RW 355 (386)
Q Consensus 278 ~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~ 355 (386)
++++ ++|.||+.. +++.+.++|+|++++|+.+|+.++++.+|++++++||+||..|.||+|+|+++|+++|+.++ ++
T Consensus 241 ~~~~-ii~~~~g~~~~l~~l~~~g~d~i~~d~~~dl~~~~~~~g~~~~l~Gn~dp~~l~~t~e~i~~~v~~~l~~~g~~~ 319 (354)
T 3cyv_A 241 RRVP-VTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGE 319 (354)
T ss_dssp EECC-EEEECTTTTTTHHHHHTTSCSEEECCTTSCHHHHHHHHTTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTSS
T ss_pred CCCC-EEEECCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEecCChHHhCCCHHHHHHHHHHHHHHhCCCC
Confidence 1367 555566555 79999999999999999999999999999999999999997779999999999999999977 57
Q ss_pred CeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 356 KHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 356 g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
|||+++||+++++||+||+++|++++++||
T Consensus 320 g~I~~~g~gi~~~~p~env~a~v~~v~~~~ 349 (354)
T 3cyv_A 320 GHVFNLGHGIHQDVPPEHAGVFVEAVHRLS 349 (354)
T ss_dssp CEEBCBSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997
|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-71 Score=539.93 Aligned_cols=346 Identities=83% Similarity=1.335 Sum_probs=320.9
Q ss_pred CCCCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccc
Q 016596 38 PKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDI 117 (386)
Q Consensus 38 ~~~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~ 117 (386)
+.||+ +||+++|++||++||+|||+|+|+|+|+|+|..++.++++|.+++.||+++++++++++++|++|++++++|+
T Consensus 7 ~~~t~--~er~~~a~~g~~~dr~Pv~~mrqagr~lpey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di 84 (353)
T 1j93_A 7 AINAT--QPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDI 84 (353)
T ss_dssp ----C--CCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCT
T ss_pred ccCCh--hHHHHHHHCCCCCCcCCeeehHhhccchHHHHHHHhccccHHHHhcCHHHHHHHHHHHHHHhCCCEEEecCCc
Confidence 55655 8999999999999999999999999999999999988845999999999999999999999999999999999
Q ss_pred ccccccCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcC
Q 016596 118 LTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEG 197 (386)
Q Consensus 118 ~~~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g 197 (386)
.+++++||+++.+.++.+|++.+||++.+|+++|+++++.++++.++++++++++++++++|++++++||||+++++++|
T Consensus 85 ~~~~~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~~~~~~~~~~v~e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g 164 (353)
T 1j93_A 85 LTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEG 164 (353)
T ss_dssp TTHHHHTTCCEEEETTTEEEESSCCCSHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHS
T ss_pred ccCHHHcCCeEEecCCCCCeeCCCCCCHHHHHhcCCCChhhhHHHHHHHHHHHHHHhCCCceEEEecChHHHHHHHHHcC
Confidence 99999999999999888888888999999999998435456788999999999999988899999999999999999987
Q ss_pred CCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC
Q 016596 198 GSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH 277 (386)
Q Consensus 198 ~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~ 277 (386)
+++++|++++++++++||.+|++++++++.+++++++++++|+++|+++|+|++++||++|+||++||++++++.+++.+
T Consensus 165 ~~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~ 244 (353)
T 1j93_A 165 GSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTH 244 (353)
T ss_dssp BCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCC
Q 016596 278 PDLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK 356 (386)
Q Consensus 278 ~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g 356 (386)
+++++ +|+||+.. +++.+.++|+|++++++.+|+.++++++|++++++||+||..|.||+|+|+++|+++++.++++|
T Consensus 245 ~~~~~-ih~c~g~~~~l~~l~~~g~d~~~~d~~~d~~~~~~~~g~~~~l~Gnldp~~l~~~~e~i~~~v~~~l~~~~~~g 323 (353)
T 1j93_A 245 PNLPL-ILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGK 323 (353)
T ss_dssp TTCCE-EEECSSCTTTGGGGGGGCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCE-EEECCChHHHHHHHHhcCCCEEEeCCCCCHHHHHHHcCCCeEEEecCCHHHHcCCHHHHHHHHHHHHHHhCCCC
Confidence 34664 68898876 68999999999999999999999999999999999999996669999999999999999987679
Q ss_pred eEEecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 357 HILNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 357 ~Ils~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
|||++||+++++||+||+++|++++++|||
T Consensus 324 ~I~~~g~gi~~~~~~enl~a~ve~v~~~~~ 353 (353)
T 1j93_A 324 HILNLGHGIKVGTPEENFAHFFEIAKGLRY 353 (353)
T ss_dssp EEBCBSSCCCTTCCHHHHHHHHHHHHTCCC
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-70 Score=532.51 Aligned_cols=336 Identities=35% Similarity=0.662 Sum_probs=313.7
Q ss_pred CCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc
Q 016596 40 NVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119 (386)
Q Consensus 40 ~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~ 119 (386)
||+ +||+++|++||++||+|||+++|+|+|+|+|+.++.++++|.+++.||+++++++++++++|++|++++++|+.+
T Consensus 1 Mt~--~er~~~a~~g~~~dr~Pv~~mrqagr~lpe~~~~~~~~~~~~~~~~~pe~~~e~~~~~~~~~~~D~~~~~~di~~ 78 (338)
T 2eja_A 1 MPK--NDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLKILGVDAIIIFSDILV 78 (338)
T ss_dssp -CC--CCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHTTSSSHHHHHHCHHHHHHHHHHHHHHHCCSCEECSCCTTG
T ss_pred CCc--hHHHHHHHcCCCCCCCCcchhhhhccccHHHHHHHhccccHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccCcce
Confidence 555 899999999999999999999999999999999998884599999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCC
Q 016596 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGS 199 (386)
Q Consensus 120 ~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~ 199 (386)
++++||+++.+.++.+|.+ ++.+|+++|+++++ ++++.++++++++++++ +++|++++++||||+++++++||+
T Consensus 79 ~~~a~G~~~~~~~~~gP~i----~~~~d~~~l~~~~~-~~l~~v~eai~~l~~~~-~~~plig~~~~P~tla~~l~egg~ 152 (338)
T 2eja_A 79 PLEPLGVKVEFVEGEGPKL----SWSGKVSDLKKYDP-SQNAYVYEIIKRVKEAQ-DEVPVIGFAGAPFTLLSYLIEGGA 152 (338)
T ss_dssp GGGGGTCEEEEETTTEEEE----ECCSCGGGSCCCCG-GGGHHHHHHHHHHHHHC-CSSCEEEEEECHHHHHHHHHHTSC
T ss_pred eHHHcCCeEEeCCCCCCCC----CCHHHHHhcCCCCh-hhhHHHHHHHHHHHHHh-cCccEEEecchHHHHHHHHHcCCC
Confidence 9999999999988766654 78889999977666 78999999999999998 678999999999999999997666
Q ss_pred chhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCC
Q 016596 200 SKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD 279 (386)
Q Consensus 200 ~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~ 279 (386)
+++|++++++++++||.+|++++++++.+++++++++++|+|+|+++|+|+++|||++|+||++||+|++++.+++. +|
T Consensus 153 ~~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g 231 (338)
T 2eja_A 153 SKDFKSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SD 231 (338)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CC
T ss_pred CccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999987 35
Q ss_pred CcEEEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC-CCCeE
Q 016596 280 LSLILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG-RWKHI 358 (386)
Q Consensus 280 ~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~-~~g~I 358 (386)
+|+++|+||+..+++.+.++|+|++++|+.+|+.++++++ +++++||+||..|.||+|+|+++|+++|+.++ ++|||
T Consensus 232 ~~~i~~~~g~~~~l~~l~~~g~d~~~~d~~~dl~~~~~~~--~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~~~g~I 309 (338)
T 2eja_A 232 TPVIYFFRGSSSFIDLAVDYRADALSVDWSVDIPELFKIY--DKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPVKTRYV 309 (338)
T ss_dssp CCEEEEESSHHHHHHHHTTSCCSEEECCTTSCHHHHHHHC--CSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCCSSSEE
T ss_pred CCEEEEcCCcHHHHHHHHHcCCCEEEeCCCCCHHHHHHhC--CeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCCCCCeE
Confidence 7999999999557999999999999999999999999999 68999999997669999999999999999977 57999
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHhhcC
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
|++||+++++||+||++||++++++||.
T Consensus 310 ~~~g~gi~~~~p~en~~a~v~~v~~~~~ 337 (338)
T 2eja_A 310 FNLGHGLAPDMELEKVKYLVDLVKSFPL 337 (338)
T ss_dssp BCBSSCCCTTSCHHHHHHHHHHHHTCCC
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999984
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-70 Score=532.05 Aligned_cols=338 Identities=34% Similarity=0.622 Sum_probs=317.8
Q ss_pred CchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccc
Q 016596 43 VAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLS 122 (386)
Q Consensus 43 ~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e 122 (386)
+++||+++|++||++||+|||+++|+|+|+|+|..++.++ +|.++|.||+++++++++++++|++|++++++|+.++++
T Consensus 12 t~~er~~~al~g~~~dr~Pvw~mrqagr~lpey~~~~~~~-~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~~~~ 90 (359)
T 2inf_A 12 TFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKY-GLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIMTPLP 90 (359)
T ss_dssp CCCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHCCSCEECCCCTTTTGG
T ss_pred ChHHHHHHHHcCCCCCcCCEeehhhhCcccHHHHHHHcCC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccHH
Confidence 4589999999999999999999999999999999999888 499999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchh
Q 016596 123 GMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKH 202 (386)
Q Consensus 123 ~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~ 202 (386)
+||+++.+.++.+|++.+||++.+|+++|+++++.++++.++++++++++++ +++|++++++||||+++++++|+++++
T Consensus 91 a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~l~~~~ea~~~l~~~~-~~~~l~g~~~~P~tla~~l~~gg~s~~ 169 (359)
T 2inf_A 91 SIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPYVLETIKLLVNEQ-LNVPLIGFSGAPFTLASYMTEGGPSKN 169 (359)
T ss_dssp GGTCCEECCSSSCCEESSCCCSHHHHHTCCCCCHHHHSHHHHHHHHHHHHHT-CSSCEEEEEECHHHHHHHHHHCSCCSS
T ss_pred HcCCEEEecCCCCCCcCCCCCCHHHHHhcCCCCccchHHHHHHHHHHHHHHh-CCcceEEEcCcHHHHHHHHHcCCCccc
Confidence 9999999998888988889999999999976665668899999999999998 668999999999999999997666778
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcE
Q 016596 203 FSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSL 282 (386)
Q Consensus 203 ~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~ 282 (386)
|++++++++++||.++++++++++.+++++++++++|+++|+++|+|++++||++|+||++||++++++.+++. ++++
T Consensus 170 ~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~--g~~~ 247 (359)
T 2inf_A 170 YNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE--NVPL 247 (359)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGG--CSCE
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHc--CCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 5799
Q ss_pred EEEecCCcchHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCC-CeEEec
Q 016596 283 ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRW-KHILNL 361 (386)
Q Consensus 283 ~~H~cG~~~~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~-g~Ils~ 361 (386)
++|+||+..+++.+.++|+|++++++.+|+.++++. |++++++||+||..|.||+|+|+++|+++++.+.++ ||||++
T Consensus 248 i~~~~G~~~~l~~l~~~g~d~~~~d~~~d~~~~~~~-g~~~~l~Gnldp~~l~~t~e~I~~~v~~~l~~~~~~~g~Il~~ 326 (359)
T 2inf_A 248 IMFGVGASHLAGDWHDLPLDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKEILDQGMESDGFIFNL 326 (359)
T ss_dssp EEECTTCGGGHHHHHTSSCSEEECCTTSCHHHHHHT-TCCSEEECCBCGGGGGSCHHHHHHHHHHHHHHHTTSSCEEBCB
T ss_pred EEEcCCcHHHHHHHHHhCCCEEEeCCCCCHHHHHHc-CCCEEEEecCChHHhcCCHHHHHHHHHHHHHhCCCCCCeEEeC
Confidence 999999955899999999999999999999999999 999999999999666999999999999999994355 999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 362 GHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
||+++++||+||+++|++++++|+
T Consensus 327 gcgi~~~~~~enl~a~ve~v~~~~ 350 (359)
T 2inf_A 327 GHGVFPDVSPEVLKKLTAFVHEYS 350 (359)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999986
|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-67 Score=513.49 Aligned_cols=326 Identities=22% Similarity=0.327 Sum_probs=291.3
Q ss_pred CCCCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccc
Q 016596 38 PKNVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDI 117 (386)
Q Consensus 38 ~~~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~ 117 (386)
.+||+ |||+++|++||++||+|||+|+|+| +++|..++. . +|.|++.|||+++|++++++++|++|++++++|+
T Consensus 11 ~~MT~--kER~l~al~ge~~DR~Pvw~mrqag--~~e~~~~~~-~-~f~e~~~~pe~~ae~tl~~~~~~~~Da~iifsDi 84 (348)
T 4ay7_A 11 SEFTL--KTRLLAALKGEPVDKVPVCSVTQTG--IVELMDVVG-A-PWPEAHTNPELMAKLALANHELSGLEAVRLPYCL 84 (348)
T ss_dssp -CCCH--HHHHHHHHHTCCCSSCCBCCSSCCC--CHHHHHHHT-C-CTTHHHHCHHHHHHHHHHHHHTTCCSSEEECSCS
T ss_pred ccCCH--HHHHHHHHcCCCCCCCCEEechhhh--HHHHHHHhC-C-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecCcc
Confidence 46776 9999999999999999999999988 567777763 3 4999999999999999999999999999999999
Q ss_pred ccccccCCceEEec-CCCCCcc-CCCCCChHHHhccCCCC---CCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHH
Q 016596 118 LTPLSGMNIPFDII-KGKGPVI-FDPINTDAEVDQVREFD---PEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLAS 192 (386)
Q Consensus 118 ~~~~e~~G~~~~~~-~~~~p~~-~~pi~~~eD~~~l~~~d---~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~ 192 (386)
.+++++||+++.|. ++.+|.+ .+|+.+ |++.+..++ ..++++.++++++++++++++++|++|+++||||+++
T Consensus 85 l~~~ea~G~~v~~~~~~~~P~v~~~~~~~--~~~~~~~~~~~~~~~~l~~v~eai~~l~~~l~~~~pligf~g~P~Tla~ 162 (348)
T 4ay7_A 85 TVLVEAMGCEINMGTKNRQPSVTGHPYPK--DLEGAAVPADLLQRGRIPVVLEAIKIIREKVGPDVPIVGGMEGPVTVAS 162 (348)
T ss_dssp CHHHHHTTCEEECCBTTBCCEEEECSCSS--CCTTCCCCTTGGGSTTHHHHHHHHHHHHHHHCTTSCEEEEEECHHHHHH
T ss_pred ccchHHcCCeEEecCCCCCCccccCCCcc--hHHHhhCCccccchhhHHHHHHHHHHHHHHhCCCeeEEEeccchHHHHH
Confidence 99999999999995 4556754 566644 334444332 2578999999999999999999999999999999999
Q ss_pred HHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHH
Q 016596 193 YVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIV 270 (386)
Q Consensus 193 ~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~ 270 (386)
++++ .++++++++++||.++++|+++++.+++|+++++++|+|+|+++|+|++ +|||++|++|++||+|+++
T Consensus 163 ~l~~------~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~ 236 (348)
T 4ay7_A 163 DLVS------VKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFA 236 (348)
T ss_dssp HHHC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHH
T ss_pred hccc------chHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHH
Confidence 9996 2356789999999999999999999999999999999999999999987 8999999999999999999
Q ss_pred HHHHhhCCCCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCC-CHHHHHHHhCCCeeEEecCCcC-cc-CCCHHHHHHHHH
Q 016596 271 DTVKQTHPDLSLILYASGSGG-LLERLALTGVDVVSLDWTV-DMAEGRRRLGPDVAVQGNVDPG-AL-FGSKDFITNRIN 346 (386)
Q Consensus 271 ~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~-dl~e~~~~~g~~~~l~G~vd~~-~l-~gt~eev~~~v~ 346 (386)
+.+++ ..++|+||++. .++.+.++|+|++++|+.+ ++.++|+.+|++++|+||+||. .| .||+|+|+++|+
T Consensus 237 ~~~~~-----~~iih~~g~~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~g~~~~l~Gnldp~~~l~~g~~e~i~~~v~ 311 (348)
T 4ay7_A 237 SSVNS-----VTVLHICGNVNPILSDMADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNVSSPFTLLPGPVDKIKAEAK 311 (348)
T ss_dssp HHSSS-----EEEEECCSCCHHHHHHHHTSCCSEEECCGGGCCHHHHHHHHTTSSEEEEEECCCCCCTTCCHHHHHHHHH
T ss_pred hhccC-----CcEEEecCCcHHHHHHHHHhccccccccchhhHHHHHHHHhCCCEEEEcCCCChHhhcCCCHHHHHHHHH
Confidence 99963 45899999987 6899999999999999876 6999999999999999999986 45 899999999999
Q ss_pred HHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 347 DTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 347 ~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++++ ++||||++||+++++||+||++||+++||+|.
T Consensus 312 ~~l~---~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~ 347 (348)
T 4ay7_A 312 EALE---GGIDVLAPGCGIAPMTPLENVKALVAARDEFY 347 (348)
T ss_dssp HHHH---TTCSEEEESSSCCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHh---CCCCEEeCCCccCCCCCHHHHHHHHHHHHHhc
Confidence 9997 45899999999999999999999999999995
|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=174.35 Aligned_cols=202 Identities=12% Similarity=0.134 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
..+.++.+++..+ .|+.+++.||+|++..+.+ + ++...+++++.+++.+.+.++.+.++|++.
T Consensus 524 ~ve~~~~l~~~t~--~pvK~~l~GP~Tl~~~~~~----r-----------~~~~~~el~~~lA~a~~~ei~~L~~aG~~~ 586 (755)
T 2nq5_A 524 TVEETVYAQSLTD--RPVKGMLTGPITITNWSFE----R-----------TDIPRDQLFNQIGLAIKDEIKLLENAGIAI 586 (755)
T ss_dssp SHHHHHHHHHTCS--SCBEEEEECHHHHHHHSBC----C-----------SSSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcC--CCeEEEecCHHHHHHHHhc----c-----------CcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 4566777777654 4778999999999988763 1 122567899999999999999999999999
Q ss_pred EEEecCCcC--C----CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-CHH
Q 016596 243 VQIFDSWAT--E----LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-DMA 313 (386)
Q Consensus 243 i~i~d~~~~--~----iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-dl~ 313 (386)
|++-|+..+ + ++++.|.+++.+.++++++.+.. +..+.+|+| |+.. .++.+.++++|+++++... |++
T Consensus 587 IQiDEP~l~~~l~~~~~~~~~~~~~av~~l~~~~~~v~~---~~~i~~HiC~G~~~~i~~~L~~~~aD~islE~~rsd~e 663 (755)
T 2nq5_A 587 IQVDEAALREGLPLRKSKQKAYLDDAVHAFHIATSSVKD---ETQIHTHMCYSKFDEIIDAIRALDADVISIETSRSHGD 663 (755)
T ss_dssp EEEEECCHHHHSCSSHHHHHHHHHHHHHHHHHHHSSSCT---TSEEEEEECCSCCSTTHHHHHHHCCSEEEC--------
T ss_pred EEEcCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEeccCCcHHHHHHHHhCCCCEEEEecCCCCHH
Confidence 999887532 2 56789999999999999988754 457899999 9887 6899999999999998543 666
Q ss_pred HHHHHhC---CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH---HHHHHHHHHHhh
Q 016596 314 EGRRRLG---PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE---NVAHFFEVAKAI 384 (386)
Q Consensus 314 e~~~~~g---~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E---ni~a~~~a~~~y 384 (386)
.++.... ++.++.|+||+... .+|+|+|++.++++++..+..+++++|+||+...++.+ ++++|+++++++
T Consensus 664 ~L~~~~~~~~~~~v~lGvvd~~s~~ve~~eeV~~ri~~a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~v 741 (755)
T 2nq5_A 664 IIESFETAVYPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNPDCGLKTRQEPETIAALKVLVAATKEV 741 (755)
T ss_dssp -----------CEEEEECSCTTSSCCCCHHHHHHHHHGGGGSSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCeEEEeeccCccCCCCCHHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6665431 46789999999876 89999999999999998776689999999999988884 999999999875
|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=172.75 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 163 VGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
..+.++.+++..+ .|+.+++.||+|++..+.+ + ++...+++++.+++.+.+.++.+.++|++.
T Consensus 539 ~ve~~~~l~~~~~--~pvK~~l~GP~Tl~~~~~~----r-----------~~~~~~~l~~~lA~a~~~ev~~L~~aG~~~ 601 (765)
T 1u1j_A 539 TVFWSAMAQSMTS--RPMKGMLTGPVTILNWSFV----R-----------NDQPRHETCYQIALAIKDEVEDLEKGGIGV 601 (765)
T ss_dssp STHHHHHHTTSCS--SCBEEEEECHHHHHHTSEE----C-----------TTSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhc--CCeEEEecCHHHHHHHHhc----c-----------CcCcHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 3456666666543 4778999999999877763 1 122567899999999999999999999999
Q ss_pred EEEecCCcC--C----CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-CHH
Q 016596 243 VQIFDSWAT--E----LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-DMA 313 (386)
Q Consensus 243 i~i~d~~~~--~----iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-dl~ 313 (386)
|++-|+..+ + ++++.|.+++.+.++++++.+.. +..+.+|+| |+.. .++.+.++++|+++++... |++
T Consensus 602 IQiDEP~l~~~l~~~~~~~~~~~~~av~~~~~~~~~v~~---~~~i~~HiC~G~~~~i~~~l~~~~~D~islE~~rs~~e 678 (765)
T 1u1j_A 602 IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEK 678 (765)
T ss_dssp EEEECTTSSTTCCSSGGGHHHHHHHHHHHHHHHHTTSCS---SSEEEEECSCSCCTTTHHHHHTTCCSEEECCBSSSCTT
T ss_pred EEECCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEeccCCcHHHHHHHHhCCCCEEEEeCCCCCHH
Confidence 999887543 3 67899999999999999998854 457899999 9887 6899999999999998543 776
Q ss_pred HHHHHh---C-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH---HHHHHHHHHHhh
Q 016596 314 EGRRRL---G-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE---NVAHFFEVAKAI 384 (386)
Q Consensus 314 e~~~~~---g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E---ni~a~~~a~~~y 384 (386)
.++... + ++.++.|+||+... .+|+|+|++.++++++..+..+++++|+||+...++.+ +|++|+++++++
T Consensus 679 ~L~~~~~~~~~~~~v~lGvvd~~s~~ve~~eev~~ri~~a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~v 757 (765)
T 1u1j_A 679 LLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLI 757 (765)
T ss_dssp GGGGGTTTTCCCSEECCBSSCTTSSSCCTHHHHHHHHHHHHHSSCSTTBCBBCSSCSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEEeecCCccCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666643 2 56888999999876 79999999999999998876789999999999988884 999999999875
|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=153.94 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhCCcee-EEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 163 VGKALTILREEVNNEAA-VLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 163 ~~ea~~~l~~~~g~~~~-v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..+.++.+++..++ .| +.+++.||+|++..+.. .+++ | ++.++++++.+++.+.+.++.+.++|++
T Consensus 116 ~~~~~~~l~~~~~~-~~~vK~~l~gP~tl~~~~~~---~~~~-------Y--~~~~~~l~~~la~a~~~ei~~l~~aG~~ 182 (375)
T 1ypx_A 116 FIEDFIFLKEAVGD-NHVAKQTIPSPAMLHYRGDI---EYQP-------Y--LDDAEKFANDLATAYQKAIQAFYDAGCR 182 (375)
T ss_dssp HHHHHHHHHHHHCS-SSEECEEEECTHHHHHHEEE---CSHH-------H--HHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcC-CCceEEecCCHHHHHHHHhc---chhh-------c--cChHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 66777888887654 35 58899999999987653 2222 2 2445889999999999999999999999
Q ss_pred EEEEecCCc-CCC-------------CHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-----------CCcc-hHHH
Q 016596 242 AVQIFDSWA-TEL-------------SPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-----------GSGG-LLER 295 (386)
Q Consensus 242 ~i~i~d~~~-~~i-------------Sp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-----------G~~~-~l~~ 295 (386)
.|++-|+.. .++ +++.|.+++.+.++++++.+.+ +..+.+|+| |+.. .++.
T Consensus 183 ~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~---~~~i~~HiC~gn~~s~~~~~g~~~~i~~~ 259 (375)
T 1ypx_A 183 YLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPA---DMVITMHICRGNFRSTWIAEGGYGPVAET 259 (375)
T ss_dssp EEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCT---TCEEEEEECCC----------CCSGGGHH
T ss_pred EEEecCCchhhhhccchhcccccccCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEEeccccCCccccccchHHHHHH
Confidence 999988743 244 6788999999999999887754 357899999 4555 6899
Q ss_pred HH-hcCCCEEEcCC---CC-CHHHHHHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC--
Q 016596 296 LA-LTGVDVVSLDW---TV-DMAEGRRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK-- 366 (386)
Q Consensus 296 l~-e~g~d~l~~d~---~~-dl~e~~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~-- 366 (386)
+. ++++|+++++. .. +++.+++.-. ++.++.|.||+... ..|+|+|++.++++++..+...++++|+||+.
T Consensus 260 l~~~~~~d~i~lE~~~~r~g~~e~L~~~~~~~~~v~lGvvd~~~~~~e~~e~v~~ri~~a~~~v~~e~l~lsPdCGl~s~ 339 (375)
T 1ypx_A 260 LFGKLNIDGFFLEYDNERSGDFAPLKYVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFAST 339 (375)
T ss_dssp HHTTCCCSEEEEECCSCC---CCTTCCCCCTTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC--
T ss_pred HHhhCCCCEEEEEecCCCCCcHHHHHHhhhcCCeEEEeeecCcCCCCCCHHHHHHHHHHHHHhcCccceEecCCCCcccc
Confidence 98 99999999973 23 4444444222 56889999999876 79999999999999999875689999999999
Q ss_pred ----CCCc---HHHHHHHHHHHHhh
Q 016596 367 ----VGTP---EENVAHFFEVAKAI 384 (386)
Q Consensus 367 ----~~tp---~Eni~a~~~a~~~y 384 (386)
.-++ .++|++|++++++.
T Consensus 340 ~~g~~~t~~~a~~kL~~~v~~A~~~ 364 (375)
T 1ypx_A 340 EEGNILTEEEQWDKLRYVVRLANDI 364 (375)
T ss_dssp ------CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7888 88999999999874
|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=136.74 Aligned_cols=196 Identities=11% Similarity=0.169 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++.+++..+ .|+.+++.||.|++..... + .|.+. .++++.+.+.+.+.++.+.++|++.|+
T Consensus 127 ~~~~~~~~~t~--~~vK~~lpgP~t~~~~~~~----~--------~y~~~---~e~~~dlA~a~~~ei~~l~~aG~~~IQ 189 (357)
T 3rpd_A 127 EDAKFLRKQTT--QPIKWALPGPMTMIDTLYD----D--------HYKSR---EKLAWEFAKILNEEAKELEAAGVDIIQ 189 (357)
T ss_dssp HHHHHHHHHCS--SCBEEEEECHHHHHTSSEE----S--------SSCCH---HHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhhcc--CCceEEeCCHHHHHHHhhh----c--------cCCCH---HHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44555665543 5788999999998643321 1 13332 477888899999999999999999999
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-C------------------Ccc-hHHHHHhcCCCEE
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-G------------------SGG-LLERLALTGVDVV 304 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G------------------~~~-~l~~l~e~g~d~l 304 (386)
+-||.-+. .++.|.++..+.++++++.+. ..+.+|+| | ... +++.+.++++|++
T Consensus 190 iDeP~l~~-~~~~~~~~~v~~~n~~~~~~~-----~~~~iHiC~G~~~~~n~d~~~t~~~~~g~y~~i~~~l~~~~~D~i 263 (357)
T 3rpd_A 190 FDEPAFNV-FFDEVNDWGIACLERAIEGLK-----CETAVHICYGYGIKANTDWKKTLGSEWRQYEEVFPKLQKSNIDII 263 (357)
T ss_dssp EECGGGGT-CHHHHHHTHHHHHHHHHTTCC-----SEEEEEECSCCSSHHHHHHHTTSCSCCCGGGGTHHHHHHSSCCEE
T ss_pred ecCccccc-cHHHHHHHHHHHHHHHHhCCC-----CceEEEEecCCccCCccccccccccccCcHHHHHHHHHhCCCCEE
Confidence 98875432 367888888888888887664 35678999 3 334 5789999999999
Q ss_pred EcCCCC---CHHHHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCc---HHHHHHH
Q 016596 305 SLDWTV---DMAEGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTP---EENVAHF 377 (386)
Q Consensus 305 ~~d~~~---dl~e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp---~Eni~a~ 377 (386)
+++... ++ ++.+.+.++.+..|.||+... ..|+|+|++.++++++..+....+++|+||+.+-++ .+++++|
T Consensus 264 ~lE~~~~r~~~-e~l~~~~~k~v~lGvvd~~s~~ve~~eev~~ri~~a~~~v~~~~l~lsPdCGl~~~~~~~a~~kL~~m 342 (357)
T 3rpd_A 264 SLECHNSHVPM-ELLELIRGKKVMVGAIDVATDTIETAEEVADTLRKALKFVDADKLYPCTNCGMTPLSHQVTRGKLNAL 342 (357)
T ss_dssp EECCTTCCCCG-GGGGGGTTSEEEEECSCTTCSSCCCHHHHHHHHHHHHTTSCGGGEEEECSSCCTTSCHHHHHHHHHHH
T ss_pred EEEecCCCCCh-HHHHhcCCCEEEeccccCcCCCCCCHHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 998643 33 556677888899999999765 799999999999999988767899999999987777 5799999
Q ss_pred HHHHHhh
Q 016596 378 FEVAKAI 384 (386)
Q Consensus 378 ~~a~~~y 384 (386)
+++++..
T Consensus 343 v~aa~~~ 349 (357)
T 3rpd_A 343 SAGAEIV 349 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=134.31 Aligned_cols=200 Identities=14% Similarity=0.159 Sum_probs=145.5
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
++.++.+++ +++ .|+.+.+.||+|++..... . ++...+++++.+.+.+.+.++.+.++|++.|
T Consensus 544 lde~~~Aks-l~~-~pvK~~LtGPvTlL~ls~~---r------------~d~~r~ell~dLA~ayreeI~~L~~AGa~~I 606 (766)
T 1t7l_A 544 LKEITYAQS-LTE-KPVKGMLTGPVTIMSWSYY---R------------EDIPEREIAYQIALAINEEVKDLEEAGIKIV 606 (766)
T ss_dssp HHHHHHHHH-TCS-SCBEEEEECHHHHHHTSEE---C------------SSSCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH-hcC-CCeEEEEeCHHHHHHHhhc---c------------CCCCHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 556666655 454 4678899999998765432 1 1123468899999999999999999999999
Q ss_pred EEecCCcC-CCCH-----HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC---CH
Q 016596 244 QIFDSWAT-ELSP-----VDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV---DM 312 (386)
Q Consensus 244 ~i~d~~~~-~iSp-----~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~---dl 312 (386)
+|-||.-. .+++ +.+.+++.+.+++. +.+.. +..+.+|+| |+.. .++.+.++++|++++|..- ++
T Consensus 607 QIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a-~gv~~---~~~I~lH~C~G~~~di~~~L~~l~VD~IsLE~~Rs~~el 682 (766)
T 1t7l_A 607 QIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARP---ETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEI 682 (766)
T ss_dssp EEECTHHHHTSCSSGGGHHHHHHHHHHHHHHH-TCCCT---TSEEEEECCCSCCTTTHHHHTTSCCSEEEEECTTTTTGG
T ss_pred EEcCCcccccCCCcchhHHHHHHHHHHHHHHh-hcCCC---CceEEEEEecCchHHHHHHHHcCCCCEEEEecCCCchhH
Confidence 99887532 3332 34445555554444 33322 357889999 7776 6899999999999998532 22
Q ss_pred HHHHHHh-C-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcH---HHHHHHHHHHHhh
Q 016596 313 AEGRRRL-G-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPE---ENVAHFFEVAKAI 384 (386)
Q Consensus 313 ~e~~~~~-g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~---Eni~a~~~a~~~y 384 (386)
.+..+.+ + ++....|.||.... ..++|++.+.++++++..+...++++|+|++..-++. ++++.|++++++.
T Consensus 683 L~~l~~~p~~~k~L~lGVVD~rn~~ved~EeI~~rI~~a~~~Vg~erL~VsPdCGL~~~p~~e~~~kLk~mvaaAkev 760 (766)
T 1t7l_A 683 ISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVALAKEM 760 (766)
T ss_dssp GHHHHTSTTCCSEEEEECSCTTSCSCCCHHHHHHHHHHHTTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCeEEEEEECCCCCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2333323 2 36788999999777 8999999999999998776457999999999876666 7899999988874
|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=129.68 Aligned_cols=185 Identities=11% Similarity=0.060 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCH-H-HHHHHHHHHHHHHHHHHHHHHHh
Q 016596 161 PYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQP-K-VLHALLRKFTTSMAKYVQYQADN 238 (386)
Q Consensus 161 ~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~P-e-~v~~ll~~~~~~~~~~~~~~~e~ 238 (386)
...++.++.+++. | +++...+.||+|++ +++ + ...+.+ + ..+++++.+++.+.++++.+.++
T Consensus 135 ~~~l~~~~~ak~~-g--~~~K~~l~GP~Tll--~l~----k-------~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~a 198 (765)
T 1u1j_A 135 HKAVNEYKEAKAL-G--VDTVPVLVGPVSYL--LLS----K-------AAKGVDKSFELLSLLPKILPIYKEVITELKAA 198 (765)
T ss_dssp CHHHHHHHHHHHT-T--CCCEEEEECHHHHH--HTC----E-------ECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHhc-C--CCceEEECCHHHHH--Hhh----h-------cccccCccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567778777654 4 55677889999998 332 1 001112 2 35688999999999999999999
Q ss_pred CCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHHHHHhcC-CCEEEcCCCC---
Q 016596 239 GAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLERLALTG-VDVVSLDWTV--- 310 (386)
Q Consensus 239 G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~~l~e~g-~d~l~~d~~~--- 310 (386)
|++.|++-||. +..++++. .+.+.+.++.+.+.+. +.++.+|+| |+.. .++.+.++| ++++++|...
T Consensus 199 G~~~VQiDEP~L~~~l~~~~-~~~~~~a~~~l~~~~~----~~~i~lhtc~G~~~~~~~~~l~~l~~vd~l~lD~v~~~~ 273 (765)
T 1u1j_A 199 GATWIQLDEPVLVMDLEGQK-LQAFTGAYAELESTLS----GLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTK 273 (765)
T ss_dssp TCCEEEEECGGGGSCCCHHH-HHHHHHHHHHSTTTTC----SSEEEEECCSSCCCHHHHHHHTTCTTCCEEEEESSSCTT
T ss_pred CCCEEEEcCCccccCCCHHH-HHHHHHHHHHHHhhcC----CCeEEEEeCCCCcchHHHHHHHcCCCCcEEEEEecCCcc
Confidence 99999998875 45677754 5555555555443221 357899999 7776 489999999 9999998532
Q ss_pred CHHHHHHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Q 016596 311 DMAEGRRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIK 366 (386)
Q Consensus 311 dl~e~~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~ 366 (386)
+++.+++.++ ++..++|.||...+ ..+++++.+.++++.+..+....+++|+|++.
T Consensus 274 ~l~~l~~~l~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~lg~~~l~lspsCgL~ 331 (765)
T 1u1j_A 274 TLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLL 331 (765)
T ss_dssp HHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGG
T ss_pred cHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhcCCCcEEEcCCCCcc
Confidence 4777777676 67899999998777 89999999999999998764569999999986
|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=128.59 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016596 162 YVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQ 241 (386)
Q Consensus 162 ~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d 241 (386)
..++.++..++.+| +++.+.+.||+|++....+ ++ .++++++.+++...++++.+.++|++
T Consensus 136 ~~l~~~~eA~~~~g--~~vK~vl~GP~Tla~l~k~----------------~~-~~~dll~~L~~~y~~~l~~L~~~Ga~ 196 (755)
T 2nq5_A 136 RLLDLYLEAREVVG--DKAKPVITGPITYVALSTG----------------VE-DFTAAVKSLLPLYKQVFTELVKAGAS 196 (755)
T ss_dssp HHHHHHHHHHHHHG--GGEEEEEECHHHHHHTCBS----------------CS-CHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcC--CCcEEEEccHHHHHHHhcC----------------Cc-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556665565555 5678889999998863210 11 24588999999999999999999999
Q ss_pred EEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-cCCcchHHHHHhcCCCEEEcCCCC----CHHHH
Q 016596 242 AVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-SGSGGLLERLALTGVDVVSLDWTV----DMAEG 315 (386)
Q Consensus 242 ~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-cG~~~~l~~l~e~g~d~l~~d~~~----dl~e~ 315 (386)
.|++.+|.. .-++++ +.+.+.+.++++...+. +.++++|+ ||+...++.+.++|++++++|... +++.+
T Consensus 197 ~VQiDEP~L~~dl~~~-~~~~~~~ay~~l~~~~~----~~~v~lhtyfG~~~~~~~l~~l~vd~l~lD~v~~~~~~l~~l 271 (755)
T 2nq5_A 197 YIQVDEPIFVTDEGKD-YLQAAKAVYAYFAKEVP----DAKFIFQTYFEGLIDSQVLSQLPVDAFGLDFVYGLEENLEAI 271 (755)
T ss_dssp EEEEECGGGGSSGGGG-GHHHHHHHHHHHHHHST----TCEEEEECCSSCCTTHHHHTTSSCSEEEEESSSSHHHHHHHH
T ss_pred EEEEeCCcccCCCCHH-HHHHHHHHHHHHHhccc----CCcEEEEEeCCChHHHHHHHhCCCCEEEEEecCCChhhHHHH
Confidence 999988764 345555 88888888888875431 24677787 888656799999999999998543 23466
Q ss_pred HHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 316 RRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 316 ~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
++.++ ++...+|.||...+ .++++++.+.++++++. ....+++|+|++
T Consensus 272 ~~~~~~~k~L~~GvVdgrniw~~d~e~v~~~l~~~~~~--~~~l~vsPsCsL 321 (755)
T 2nq5_A 272 KTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQ--SAALTIQPSCSL 321 (755)
T ss_dssp HTTTTTTSEEEEEEECTTSCBCCCHHHHHHHHHHHHHT--SSEEEEEESSCG
T ss_pred HHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHhh--cCCEEEcCCCCc
Confidence 66676 67899999998777 89999999999999986 446999999996
|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-11 Score=122.83 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=129.5
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+-++.+++..+ .|+-+++.||.|++..... +. +.+ ..++++.+...+.+.++.+.++|++.|+
T Consensus 572 ~~~~~~qs~t~--~pvK~~L~gP~ti~~~s~~----r~--------~~~---~ee~~~dlA~A~r~Ei~~L~~AG~r~IQ 634 (789)
T 3ppg_A 572 KESVYAQSITS--KPMKGMLTGPVTILRWSFP----RD--------DVS---GKIQALQLGLALRDEVNDLEGAGITVIQ 634 (789)
T ss_dssp HHHHHHHHTCS--SCBEEEEECHHHHHHTSBC----CS--------SSC---HHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhhcc--CCCceeccchHhHhhhhcc----cc--------CCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 33445555433 3678889999998755431 11 111 2578888999999999999999999999
Q ss_pred EecCCc-CC------CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcchHHHHHhcCCCEEEcCC--CCCHHH
Q 016596 245 IFDSWA-TE------LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGGLLERLALTGVDVVSLDW--TVDMAE 314 (386)
Q Consensus 245 i~d~~~-~~------iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~~l~~l~e~g~d~l~~d~--~~dl~e 314 (386)
+-|+.- .. .+++.|.++....+++.++.+.. +..+.+|+| |+... +.+.++++|+++++. ..+.+.
T Consensus 635 iDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~p~---d~~I~tHiC~Gnf~~-~~I~~l~aD~islE~~~Rs~~e~ 710 (789)
T 3ppg_A 635 VDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVEN---STQIHSHFCYSDLDP-NHIKALDADVVSIEFSKKDDPNY 710 (789)
T ss_dssp EECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSSCT---TSEEEEECC---CCH-HHHHHHCCSEEEEC---------
T ss_pred EcccchhhcccccccCCHHHHHHHHHHHHHHHHhcCCC---CcEEEEeccCCCCCh-hHHHhCCCCEEEEecCCCcchHH
Confidence 988643 11 23444555555555555554432 345789999 88766 888899999999983 223322
Q ss_pred HHHHh-CCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCc---HHHHHHHHHHHHhh
Q 016596 315 GRRRL-GPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTP---EENVAHFFEVAKAI 384 (386)
Q Consensus 315 ~~~~~-g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp---~Eni~a~~~a~~~y 384 (386)
++..- .++.+..|.||...- ..|+|+|.+.+++.++..+....+++|+||+.+-++ .+++++|+++++..
T Consensus 711 L~~~~~~~k~V~lGVvds~sp~vEs~EeV~~rI~~a~~~v~~erL~lsPdCGl~t~~~~~a~akL~~mveaAk~l 785 (789)
T 3ppg_A 711 IQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEF 785 (789)
T ss_dssp CGGGGGCCSEEEEC-------CCCCHHHHHHHHHHHTTTSCGGGEEECCSCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEeeeecCCCCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 22111 246788999998765 799999999999999988767899999999976665 67888899988764
|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00054 Score=71.75 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCCc-CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEE-EEecCCcc-hHHH
Q 016596 219 ALLRKFTTSMAKYVQYQADNGAQAVQIFDSWA-TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLI-LYASGSGG-LLER 295 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~-~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~-~H~cG~~~-~l~~ 295 (386)
++++.+.+...+.++.+.++|+.-|++-+|.- .-++++ +.+.+...+.+|.. .. ...++ ...+|+.. .++.
T Consensus 213 ~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~-~~~~~~~aY~~L~~----~~-~~kill~TYFg~~~~~l~~ 286 (789)
T 3ppg_A 213 SLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEA-VQSKFKEAYDALVG----AD-VPELILTTYFGDVRPNLKA 286 (789)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHH-HHTHHHHHHHHHCS----TT-SCEEEEECCSSCCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHH-HHHHHHHHHHHHhh----CC-CCCEEEECCCCCHHHHHHH
Confidence 46788888888888889999999999988763 345544 34444444444433 11 22333 35688876 6899
Q ss_pred HHhcCCCEEEcCCC---CCHHHHHHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---CC
Q 016596 296 LALTGVDVVSLDWT---VDMAEGRRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI---KV 367 (386)
Q Consensus 296 l~e~g~d~l~~d~~---~dl~e~~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i---~~ 367 (386)
+.++|++++++|.. .++..+.+.++ +++...|-||-... ..+.+++.+.++++.+..+....+++|+|++ |.
T Consensus 287 l~~lpV~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGRNiWr~dl~~~l~~l~~l~~~lg~~~l~vspScSLlHvP~ 366 (789)
T 3ppg_A 287 IENLPVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASAVVQKAIEKVGKDKVVVATSSSLLHTPV 366 (789)
T ss_dssp HTTCCCSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSSCCBCCCHHHHHHHHHHHHHHHCGGGEEEEESSCGGGSCS
T ss_pred HHcCCCcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCCccccCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCc
Confidence 99999999999864 36777777675 46777899998776 8999999999999998876468999999996 55
Q ss_pred CCc
Q 016596 368 GTP 370 (386)
Q Consensus 368 ~tp 370 (386)
+..
T Consensus 367 ~l~ 369 (789)
T 3ppg_A 367 DLE 369 (789)
T ss_dssp CGG
T ss_pred ccc
Confidence 543
|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.037 Score=57.78 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcchHH
Q 016596 217 LHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGGLLE 294 (386)
Q Consensus 217 v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~~l~ 294 (386)
+..+++.+.....+.++.+.++|+.-|++-+|.-. -+++ .+.+.+...+.++ . +..+++.+- |+...++
T Consensus 202 ~~~~l~~l~~~y~~~l~~l~~~g~~~vq~dep~l~~d~~~-~~~~~~~~~y~~l----~----~~~~~~~tyf~~~~~~~ 272 (766)
T 1t7l_A 202 MEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEK-AHWDLILNVYREL----S----EFPLTVFTYYDSVSDYE 272 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEECGGGGSCCBH-HHHHHHHHHHHTT----T----TSCEEEECCSSCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEecCCeeecCCCH-HHHHHHHHHHHHh----c----CCcEEEECCcCCHHHHH
Confidence 34889999999999999999999999999887643 3444 4566666666665 1 235566543 5544689
Q ss_pred HHHhcCCCEEEcCCCC---CHHHHHH-HhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---
Q 016596 295 RLALTGVDVVSLDWTV---DMAEGRR-RLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI--- 365 (386)
Q Consensus 295 ~l~e~g~d~l~~d~~~---dl~e~~~-~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--- 365 (386)
.+.++|++++++|-.- ++..+.+ .++ +++...|-||-... ..+.++..+.++++.+ .+++|+|++
T Consensus 273 ~~~~l~v~~~~~d~v~~~~~~~~~~~~~~~~~~~l~~Gvvdgrniw~~d~~~~~~~~~~~~~------~~~~~s~sllh~ 346 (766)
T 1t7l_A 273 ACVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDLRKVASLVEKLGA------SAISNSCPLFHL 346 (766)
T ss_dssp HHHTSSCSEEEEECSSCSHHHHHHHHHCCCTTSEEEEEEECSSCCBCCCHHHHHHHHHHHTC------SEEEESSCGGGS
T ss_pred HHHcCCCcEEEEEecCCHHHHHHHHhccCCCCceEEEEEecCcchhhcCHHHHHHHHHHhhe------EEEECCcCCeec
Confidence 9999999999997542 4566666 365 67777888898776 7888777666664432 899999996
Q ss_pred CCCCcHH
Q 016596 366 KVGTPEE 372 (386)
Q Consensus 366 ~~~tp~E 372 (386)
|.+...|
T Consensus 347 p~~~~~e 353 (766)
T 1t7l_A 347 PVTLELE 353 (766)
T ss_dssp CSCSTTC
T ss_pred ccccccc
Confidence 5554443
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.11 Score=48.65 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC
Q 016596 214 PKVLHALLRKFTTSMAKYVQYQA-DNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG 288 (386)
Q Consensus 214 Pe~v~~ll~~~~~~~~~~~~~~~-e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG 288 (386)
|+.+.+.++...+-..++++.++ +.|||.|-+.. +.+.-+|++.+.+. ++.+.+.. ++|+.+--||
T Consensus 68 ~~~v~~~~~~~~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~--------V~~v~~~~-~vPlsIDg~~ 138 (323)
T 4djd_D 68 PDVLKDPFTDVINEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVAT--------VKEVLQAV-GVPLVVVGCG 138 (323)
T ss_dssp CHHHHGGGTTTTTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHH--------HHHHHHHC-CSCEEEECCS
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHH--------HHHHHhhC-CceEEEECCC
Confidence 44455554444445677888888 89999999863 22347899886664 33333332 6899999999
Q ss_pred Ccc-h---HHHHHhcCCC---EE-EcCCC--CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC--CCC
Q 016596 289 SGG-L---LERLALTGVD---VV-SLDWT--VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWK 356 (386)
Q Consensus 289 ~~~-~---l~~l~e~g~d---~l-~~d~~--~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~--~~g 356 (386)
|.+ . ++.-++.|.+ ++ ++... ..+..+..++|-.+++|...| . ++.++..+.+...| ...
T Consensus 139 ~~T~~~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d-------~-~~~~~l~~~a~~~GI~~e~ 210 (323)
T 4djd_D 139 DVEKDHEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSPLD-------I-NICKQLNILINEMNLPLDH 210 (323)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEECSSC-------H-HHHHHHHHHHHTTTCCGGG
T ss_pred CCCCCHHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEEccch-------H-HHHHHHHHHHHHcCCCHHH
Confidence 975 2 4555666744 44 34322 346777788988777776332 1 33333344445555 468
Q ss_pred eEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 357 HILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 357 ~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
.||-||.+ |.++..|.-...++..+
T Consensus 211 IIlDPg~g-~fgk~~e~~l~~l~~ir 235 (323)
T 4djd_D 211 IVIDPSIG-GLGYGIEYSFSIMERIR 235 (323)
T ss_dssp EEEECCCC-CTTTTHHHHHHHHHHHH
T ss_pred EEEeCCCc-cccCCHHHHHHHHHHHH
Confidence 99999988 33333343334444444
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.36 Score=44.19 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhc--CCCE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--GVDV 303 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~--g~d~ 303 (386)
+...+.++.+++.|||.|-+.-.+ +.+.=.+-+.|..+.+.+.. ++|+.+-+. +...++.-.+. |.++
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s----~~~eE~~rv~~vi~~l~~~~-----~~pisIDT~-~~~v~~aal~a~~Ga~i 103 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGP----TADDPVRVMEWLVKTIQEVV-----DLPCCLDST-NPDAIEAGLKVHRGHAM 103 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCS----CSSCHHHHHHHHHHHHHHHC-----CCCEEEECS-CHHHHHHHHHHCCSCCE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCc----CchhHHHHHHHHHHHHHHhC-----CCeEEEeCC-CHHHHHHHHHhCCCCCE
Confidence 445567778999999999886544 22222334555555554432 467666544 22346666677 9999
Q ss_pred EE-cCCCC----CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc---C--CCCeEEecCCCCCCCCcHHH
Q 016596 304 VS-LDWTV----DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA---G--RWKHILNLGHGIKVGTPEEN 373 (386)
Q Consensus 304 l~-~d~~~----dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~~~tp~En 373 (386)
++ +.... .+..+.+++|-.+++|- .|....-.|.+++.+..++.++.+ | ....|+-||.+....+...|
T Consensus 104 INdvs~~~d~~~~~~~~~a~~~~~vv~m~-~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~ 182 (271)
T 2yci_X 104 INSTSADQWKMDIFFPMAKKYEAAIIGLT-MNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHA 182 (271)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEEES-CBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHH
T ss_pred EEECCCCccccHHHHHHHHHcCCCEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHH
Confidence 95 54332 35666677887666664 333333346788888888877765 3 24699999998644455555
Q ss_pred HHHHHHHHH
Q 016596 374 VAHFFEVAK 382 (386)
Q Consensus 374 i~a~~~a~~ 382 (386)
+ .+++..+
T Consensus 183 ~-~~l~~l~ 190 (271)
T 2yci_X 183 V-EVLETIR 190 (271)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 4 3444443
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=95.55 E-value=0.94 Score=41.90 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~ 301 (386)
+..++.++.+++.|||.|-+.-. .+..+|++.=-+-+.|..+.+.+.+ ++|+.+.+.- ...++.-.+.|+
T Consensus 63 ~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-----~vpiSIDT~~-~~V~~aAl~aGa 136 (297)
T 1tx2_A 63 DAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-----KLPISIDTYK-AEVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-----CSCEEEECSC-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CceEEEeCCC-HHHHHHHHHcCC
Confidence 44556677899999999998752 2347888766666777777766543 4788777652 224566667799
Q ss_pred CEEE-cCC---CCCHHHHHHHhCCCeeEEecC-CcCccCCCHHHHHHHHHHHHHHc---C--CCCeEEecCCCCCCCCcH
Q 016596 302 DVVS-LDW---TVDMAEGRRRLGPDVAVQGNV-DPGALFGSKDFITNRINDTVRKA---G--RWKHILNLGHGIKVGTPE 371 (386)
Q Consensus 302 d~l~-~d~---~~dl~e~~~~~g~~~~l~G~v-d~~~l~gt~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~~~tp~ 371 (386)
++++ +.. ...+.++.+++|-.+++|-.- .|. .....+++.+..++.++.+ | ....||-||.+. ..+..
T Consensus 137 ~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~-y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gf-gk~~~ 214 (297)
T 1tx2_A 137 HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMN-YRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGF-AKTPE 214 (297)
T ss_dssp CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCC-CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SCCHH
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCC-cchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCc-CCCHH
Confidence 9995 322 234666677788777776531 121 1123567777777766654 3 247999999887 44556
Q ss_pred HHHHHHHHHHH
Q 016596 372 ENVAHFFEVAK 382 (386)
Q Consensus 372 Eni~a~~~a~~ 382 (386)
.|+ .+++..+
T Consensus 215 ~n~-~ll~~l~ 224 (297)
T 1tx2_A 215 QNL-EAMRNLE 224 (297)
T ss_dssp HHH-HHHHTGG
T ss_pred HHH-HHHHHHH
Confidence 666 4444333
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=95.52 E-value=1.4 Score=40.33 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEec-C---CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFD-S---WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d-~---~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~ 301 (386)
+..++.++.+++.|||.|-++- + .+..+|++.=.+-+.|..+.+.+.. ++|+.+++-. ...++.-.+.|+
T Consensus 38 ~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-----~~piSIDT~~-~~va~aAl~aGa 111 (282)
T 1aj0_A 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-----EVWISVDTSK-PEVIRESAKVGA 111 (282)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-----CCEEEEECCC-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-----CCeEEEeCCC-HHHHHHHHHcCC
Confidence 4455667779999999999875 3 2347888776666777777766543 4687776632 224566677799
Q ss_pred CEEE-cCC--CCCHHHHHHHhCCCeeEEecC-CcCcc-----CCC-HHHHHHHHHHHHHHc---C--CCCeEEecCCCCC
Q 016596 302 DVVS-LDW--TVDMAEGRRRLGPDVAVQGNV-DPGAL-----FGS-KDFITNRINDTVRKA---G--RWKHILNLGHGIK 366 (386)
Q Consensus 302 d~l~-~d~--~~dl~e~~~~~g~~~~l~G~v-d~~~l-----~gt-~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~ 366 (386)
++++ +.. ...+.++.+++|-.+++|-.- .|..+ +.+ .+|+.+..++.++.+ | ....||-||.+.
T Consensus 112 ~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf- 190 (282)
T 1aj0_A 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF- 190 (282)
T ss_dssp CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-
T ss_pred CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc-
Confidence 9995 332 346777788888878886531 12222 122 356666666666554 3 247999999887
Q ss_pred CCCcHHHHHHHHHHHH
Q 016596 367 VGTPEENVAHFFEVAK 382 (386)
Q Consensus 367 ~~tp~Eni~a~~~a~~ 382 (386)
..+...|+ .+++..+
T Consensus 191 ~k~~~~n~-~ll~~l~ 205 (282)
T 1aj0_A 191 GKNLSHNY-SLLARLA 205 (282)
T ss_dssp SCCHHHHH-HHHHTGG
T ss_pred ccCHHHHH-HHHHHHH
Confidence 44566665 4444433
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.67 E-value=1.6 Score=40.67 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC---cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSW---ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~---~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~ 301 (386)
+..++.++.+++.|||.|-++-.+ +..+|++.--+-+.|..+.+.+.+ +++++.+ +-... .++.-.+.|+
T Consensus 65 ~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~----~~vpISI--DT~~~~VaeaAl~aGa 138 (318)
T 2vp8_A 65 AAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAY----PDQLISV--DTWRAQVAKAACAAGA 138 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHS----TTCEEEE--ECSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhC----CCCeEEE--eCCCHHHHHHHHHhCC
Confidence 345556677999999999887422 146887776667777777766543 2355444 32222 4677777899
Q ss_pred CEEE-cC--CCCCHHHHHHHhCCCeeEEec--CCcCccCC------CHHHHHHHH----HHHHHHc---C--CCCeEEec
Q 016596 302 DVVS-LD--WTVDMAEGRRRLGPDVAVQGN--VDPGALFG------SKDFITNRI----NDTVRKA---G--RWKHILNL 361 (386)
Q Consensus 302 d~l~-~d--~~~dl~e~~~~~g~~~~l~G~--vd~~~l~g------t~eev~~~v----~~~i~~~---~--~~g~Ils~ 361 (386)
++++ +. ....+.++.+++|-.+++|-. ..|..+.. ++++|.+++ ++.++.+ | ....||-|
T Consensus 139 ~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDP 218 (318)
T 2vp8_A 139 DLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDP 218 (318)
T ss_dssp CEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEET
T ss_pred CEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcC
Confidence 9995 32 234677788888877777653 31433311 124444443 3444433 3 24799999
Q ss_pred CCCCCCCCcHHHHHHH
Q 016596 362 GHGIKVGTPEENVAHF 377 (386)
Q Consensus 362 gc~i~~~tp~Eni~a~ 377 (386)
|.+.. .+...|+..+
T Consensus 219 G~GF~-Kt~~~nl~ll 233 (318)
T 2vp8_A 219 AHDFG-KNTFHGLLLL 233 (318)
T ss_dssp TTTCC-TTSHHHHHHH
T ss_pred CCCcc-cCHHHHHHHH
Confidence 99985 4667776443
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=93.78 E-value=3.9 Score=37.34 Aligned_cols=143 Identities=16% Similarity=0.129 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC----cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSW----ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
..++.++.+++.|||.|-++-.+ +..+|++.=-+-+.|..+.+.+ . ++|+.+++-. ...++.-.+.|++
T Consensus 30 ~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~----~--~~piSIDT~~-~~va~aAl~aGa~ 102 (280)
T 1eye_A 30 DAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAA----Q--GITVSIDTMR-ADVARAALQNGAQ 102 (280)
T ss_dssp HHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHH----T--TCCEEEECSC-HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhc----C--CCEEEEeCCC-HHHHHHHHHcCCC
Confidence 34466677999999999887522 2356766555556677666654 2 4677776632 2245666778999
Q ss_pred EEE-cCC---CCCHHHHHHHhCCCeeEEecC-CcCcc-C-----CC-HHHHHHHHHHHHHHc---C--CCCeEEecCCCC
Q 016596 303 VVS-LDW---TVDMAEGRRRLGPDVAVQGNV-DPGAL-F-----GS-KDFITNRINDTVRKA---G--RWKHILNLGHGI 365 (386)
Q Consensus 303 ~l~-~d~---~~dl~e~~~~~g~~~~l~G~v-d~~~l-~-----gt-~eev~~~v~~~i~~~---~--~~g~Ils~gc~i 365 (386)
+++ +.. ...+.++.+++|-.+++|-.- .|..+ . .+ .++|.++.++.++.+ | ....||-||-+.
T Consensus 103 iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf 182 (280)
T 1eye_A 103 MVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 182 (280)
T ss_dssp EEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred EEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCc
Confidence 995 321 245778888888878886531 13222 1 11 345555555555544 3 347999999886
Q ss_pred CCCCcHHHHHHH
Q 016596 366 KVGTPEENVAHF 377 (386)
Q Consensus 366 ~~~tp~Eni~a~ 377 (386)
.. +...|+..+
T Consensus 183 ~k-~~~~n~~ll 193 (280)
T 1eye_A 183 AK-TAQHNWAIL 193 (280)
T ss_dssp SC-CHHHHHHHH
T ss_pred cc-CHHHHHHHH
Confidence 54 666666443
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=4.2 Score=36.90 Aligned_cols=142 Identities=16% Similarity=0.127 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g 300 (386)
+..++.++.+++.|||.|-++. |.+..+|++.=.+-+.|..+.+. +. ++++.+ +-... ....-.+.|
T Consensus 30 ~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~----~~--~v~iSI--DT~~~~Va~~al~aG 101 (270)
T 4hb7_A 30 ETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIV----GF--DVKISV--DTFRSEVAEACLKLG 101 (270)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHT----TS--SSEEEE--ECSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhh----cC--CCeEEE--ECCCHHHHHHHHHhc
Confidence 3455667778999999999874 23458998876666778776663 32 455433 32232 357777899
Q ss_pred CCEEE-cC-C--CCCHHHHHHHhCCCeeEEecCC-cCccCCCHHHHHHHHHHHHHHc---C--CCCeEEecCCCCCCCCc
Q 016596 301 VDVVS-LD-W--TVDMAEGRRRLGPDVAVQGNVD-PGALFGSKDFITNRINDTVRKA---G--RWKHILNLGHGIKVGTP 370 (386)
Q Consensus 301 ~d~l~-~d-~--~~dl~e~~~~~g~~~~l~G~vd-~~~l~gt~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~~~tp 370 (386)
++++| +. . ...+.++...++-.+++|=.-. |.. ..-.+||.++..+.++.+ | ....||-||-|.. -+.
T Consensus 102 a~iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~-~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFg-Kt~ 179 (270)
T 4hb7_A 102 VDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRD-EPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFA-KTR 179 (270)
T ss_dssp CCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCS-SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS-CCH
T ss_pred cceeccccccccchhHHHHHHHcCCCeEEeccccCCcc-ccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcc-ccc
Confidence 99996 32 2 2457777888887788873211 111 223466766666555443 3 3579999999985 567
Q ss_pred HHHHHHH
Q 016596 371 EENVAHF 377 (386)
Q Consensus 371 ~Eni~a~ 377 (386)
..|+.-+
T Consensus 180 ~~N~~ll 186 (270)
T 4hb7_A 180 NEEAEVM 186 (270)
T ss_dssp HHHHHHH
T ss_pred ccHHHHH
Confidence 8888654
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.43 Score=45.73 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCCEEEEecC-CcCCCCH----------------HHHH--HhhHHHHHHHHHHHHhhCCCCcEEEEecCC
Q 016596 229 AKYVQYQADNGAQAVQIFDS-WATELSP----------------VDFE--EFSLPYLKQIVDTVKQTHPDLSLILYASGS 289 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~-~~~~iSp----------------~~f~--ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~ 289 (386)
++.+++..++|||.+-+--- -.+++|| ++|+ ++-+..++.|.+..++. |.+ +.+.--
T Consensus 47 ~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~--Gi~--~~stpf 122 (385)
T 1vli_A 47 FALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK--QVI--FLSTVC 122 (385)
T ss_dssp HHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHT--TCE--EECBCC
T ss_pred HHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHc--CCc--EEEccC
Confidence 34445567799998865310 0122233 3344 46778899999999997 443 233222
Q ss_pred -cchHHHHHhcCCCEEEcCC--CCCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 290 -GGLLERLALTGVDVVSLDW--TVDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 290 -~~~l~~l~e~g~d~l~~d~--~~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
..-++.+.+++++++-+.. ..|+.-+++. .|+-+.|.-| ..|.+|+...+.-+.+. |...+||-= |.
T Consensus 123 D~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStG------maTl~Ei~~Ave~i~~~-Gn~~iiLlh-c~ 194 (385)
T 1vli_A 123 DEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTA------GAEISDVHEAWRTIRAE-GNNQIAIMH-CV 194 (385)
T ss_dssp SHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECT------TCCHHHHHHHHHHHHTT-TCCCEEEEE-EC
T ss_pred CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECC------CCCHHHHHHHHHHHHHC-CCCcEEEEe-cc
Confidence 2358999999999997753 3576666554 3443333322 35899998887766544 434677754 44
Q ss_pred CCCCCcHH--HHHHHHHHHHhh
Q 016596 365 IKVGTPEE--NVAHFFEVAKAI 384 (386)
Q Consensus 365 i~~~tp~E--ni~a~~~a~~~y 384 (386)
-...+|++ ||.+|-...+.|
T Consensus 195 s~YPtp~~~~nL~aI~~Lk~~f 216 (385)
T 1vli_A 195 AKYPAPPEYSNLSVIPMLAAAF 216 (385)
T ss_dssp SSSSCCGGGCCTTHHHHHHHHS
T ss_pred CCCCCChhhcCHHHHHHHHHHc
Confidence 33334444 555554444444
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.33 E-value=4.4 Score=37.18 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHh-cC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLAL-TG 300 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e-~g 300 (386)
++.++...++|+|++.+.-|...-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+.+ .+
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~~----~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p 155 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVSPYYNKPTQE----GIYQHFKAIDAAS-----TIPIIVYNIPGRSAIEIHVETLARIFEDCP 155 (292)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHH----HHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHH----HHHHHHHHHHHhC-----CCCEEEEeCccccCcCCCHHHHHHHHhhCC
Confidence 5566677789999999877765444543 3445667777765 468888763 432 2 2445555 54
Q ss_pred CCEEEc-CCCCC---HHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHH
Q 016596 301 VDVVSL-DWTVD---MAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAH 376 (386)
Q Consensus 301 ~d~l~~-d~~~d---l~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a 376 (386)
+++.+ +...| +.++++..+++..++.|-|... ...+. .|+.|+|-+.++- -|+-+.+
T Consensus 156 -nIvgiK~s~gd~~~~~~~~~~~~~~f~v~~G~d~~~------------~~~l~-~G~~G~is~~~n~-----~P~~~~~ 216 (292)
T 2vc6_A 156 -NVKGVXDATGNLLRPSLERMACGEDFNLLTGEDGTA------------LGYMA-HGGHGCISVTANV-----APALCAD 216 (292)
T ss_dssp -TEEEEEECSCCTHHHHHHHHHSCTTSEEEESCGGGH------------HHHHH-TTCCEEEESGGGT-----CHHHHHH
T ss_pred -CEEEEecCCCCHHHHHHHHHHcCCCEEEEECchHHH------------HHHHH-cCCCEEEecHHHh-----CHHHHHH
Confidence 56665 33345 4455555665665555544322 11122 2344666655533 3455556
Q ss_pred HHHHHH
Q 016596 377 FFEVAK 382 (386)
Q Consensus 377 ~~~a~~ 382 (386)
|+++++
T Consensus 217 l~~a~~ 222 (292)
T 2vc6_A 217 FQQACL 222 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.8 Score=42.45 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..+++++++.++|++.|-+.- +.||+....+. -..+++..+.+. ++.++..|.. +...++...+.|++.
T Consensus 28 ~~e~k~~i~~~L~~~Gv~~IE~g~----~~~~~~~~~~~--d~~~~~~~~~~~-~~~~~~~l~~-~~~~i~~a~~aG~~~ 99 (302)
T 2ftp_A 28 EVADKIRLVDDLSAAGLDYIEVGS----FVSPKWVPQMA--GSAEVFAGIRQR-PGVTYAALAP-NLKGFEAALESGVKE 99 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEE----CSCTTTCGGGT--THHHHHHHSCCC-TTSEEEEECC-SHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHcCcCEEEECC----CcCcccccccc--CHHHHHHHhhhc-CCCEEEEEeC-CHHHHHHHHhCCcCE
Confidence 355666778888899999887542 23332111111 011234444433 3677888873 433578888999998
Q ss_pred EEc-CCCCCH--------------------HHHHHHhCCCeeEEecCCcC----cc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 304 VSL-DWTVDM--------------------AEGRRRLGPDVAVQGNVDPG----AL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 304 l~~-d~~~dl--------------------~e~~~~~g~~~~l~G~vd~~----~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
+.+ +...|. -+..+..|. .+.|++-.. .- .-++|++.+.++++.+.+.+ .+
T Consensus 100 v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~--~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d-~i 176 (302)
T 2ftp_A 100 VAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQV--RVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCY-EV 176 (302)
T ss_dssp EEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTC--EEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCS-EE
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCC-EE
Confidence 876 332221 122233443 444443322 11 46788888888887766423 55
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.|+...++ ..|+.+..+++++++
T Consensus 177 ~l~DT~G~---~~P~~~~~lv~~l~~ 199 (302)
T 2ftp_A 177 SLGDTIGV---GTAGATRRLIEAVAS 199 (302)
T ss_dssp EEEESSSC---CCHHHHHHHHHHHTT
T ss_pred EEeCCCCC---cCHHHHHHHHHHHHH
Confidence 55544554 346666677777654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.91 Score=42.94 Aligned_cols=144 Identities=13% Similarity=0.064 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCEEEEecC-CcCCCCH---------------HHHH--HhhHHHHHHHHHHHHhhCCCCcEEEEecCCc
Q 016596 229 AKYVQYQADNGAQAVQIFDS-WATELSP---------------VDFE--EFSLPYLKQIVDTVKQTHPDLSLILYASGSG 290 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~-~~~~iSp---------------~~f~--ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~ 290 (386)
.+.+++..++|||++-+--= -.+++|| ++|+ ++-+..++.|.+..++. |.+ ++=..=+.
T Consensus 38 ~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~--Gi~-~~st~~d~ 114 (349)
T 2wqp_A 38 FEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK--GMI-FISTLFSR 114 (349)
T ss_dssp HHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT--TCE-EEEEECSH
T ss_pred HHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHh--CCe-EEEeeCCH
Confidence 34445567799998765310 0012222 4444 34677889999999997 444 22222233
Q ss_pred chHHHHHhcCCCEEEcCC--CCCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Q 016596 291 GLLERLALTGVDVVSLDW--TVDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIK 366 (386)
Q Consensus 291 ~~l~~l~e~g~d~l~~d~--~~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~ 366 (386)
.-++.+.+++++++-+.. ..|+.-+++. .|+-+.|.-| ..|.+|+...+.-+.+.+ . .+||-= |.-.
T Consensus 115 ~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstG------mat~~Ei~~Ave~i~~~G-~-~iiLlh-c~s~ 185 (349)
T 2wqp_A 115 AAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTG------MNSIESIKKSVEIIREAG-V-PYALLH-CTNI 185 (349)
T ss_dssp HHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECT------TCCHHHHHHHHHHHHHHT-C-CEEEEE-CCCC
T ss_pred HHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECC------CCCHHHHHHHHHHHHHcC-C-CEEEEe-ccCC
Confidence 357889999999997754 3576666554 3443333222 359999998888776653 3 777764 4333
Q ss_pred CCCcHH--HHHHHHHHHHhh
Q 016596 367 VGTPEE--NVAHFFEVAKAI 384 (386)
Q Consensus 367 ~~tp~E--ni~a~~~a~~~y 384 (386)
..+|++ |+.++-..-+.|
T Consensus 186 Yp~~~~~~nL~ai~~lk~~f 205 (349)
T 2wqp_A 186 YPTPYEDVRLGGMNDLSEAF 205 (349)
T ss_dssp SSCCGGGCCTHHHHHHHHHC
T ss_pred CCCChhhcCHHHHHHHHHHC
Confidence 334444 555555444444
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=93.00 E-value=5.7 Score=36.86 Aligned_cols=94 Identities=19% Similarity=0.286 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g 300 (386)
.++.++...++|+|++.+.-|...-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+.+.+
T Consensus 107 ai~la~~A~~~Gadavlv~~P~y~~~s~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p 177 (314)
T 3qze_A 107 AVALTEAAKSGGADACLLVTPYYNKPTQE----GMYQHFRHIAEAV-----AIPQILYNVPGRTSCDMLPETVERLSKVP 177 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHH----HHHHHHHHHHHHS-----CSCEEEEECHHHHSCCCCHHHHHHHHTST
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHhcCC
Confidence 34666677789999999877765444543 3455788888876 468888865 332 2 245556654
Q ss_pred CCEEEc-CCCCCHHHH---HHHhCCCeeEEecCCc
Q 016596 301 VDVVSL-DWTVDMAEG---RRRLGPDVAVQGNVDP 331 (386)
Q Consensus 301 ~d~l~~-d~~~dl~e~---~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+... .+..+++..+..|-|.
T Consensus 178 -nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~ 211 (314)
T 3qze_A 178 -NIIGIKEATGDLQRAKEVIERVGKDFLVYSGDDA 211 (314)
T ss_dssp -TEEEEEECSCCHHHHHHHHHHSCTTSEEEESCGG
T ss_pred -CEEEEEcCCCCHHHHHHHHHHcCCCeEEEecChH
Confidence 66666 444566544 4445666666555543
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=92.81 E-value=3.8 Score=36.89 Aligned_cols=138 Identities=17% Similarity=0.121 Sum_probs=84.9
Q ss_pred HHHHHHHhCCCEE--EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe--------cCCc-chH----HH
Q 016596 231 YVQYQADNGAQAV--QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA--------SGSG-GLL----ER 295 (386)
Q Consensus 231 ~~~~~~e~G~d~i--~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~--------cG~~-~~l----~~ 295 (386)
.++..+++|++.| .+.+.. .+.+ + .....+++.+.+++. |.++++.+ +|.. ..+ ..
T Consensus 104 ~v~~a~~~Ga~~v~~~l~~~~---~~~~---~-~~~~~~~v~~~~~~~--g~~viv~~~~~G~~l~~~~~~~~~~~~a~~ 174 (273)
T 2qjg_A 104 TVEEAIRMGADAVSIHVNVGS---DEDW---E-AYRDLGMIAETCEYW--GMPLIAMMYPRGKHIQNERDPELVAHAARL 174 (273)
T ss_dssp CHHHHHHTTCSEEEEEEEETS---TTHH---H-HHHHHHHHHHHHHHH--TCCEEEEEEECSTTCSCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEecCC---CCHH---H-HHHHHHHHHHHHHHc--CCCEEEEeCCCCcccCCCCCHhHHHHHHHH
Confidence 3445678999998 443332 2322 2 234677888888876 57777654 1111 112 44
Q ss_pred HHhcCCCEEEcCCCCCHHHH---HHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH
Q 016596 296 LALTGVDVVSLDWTVDMAEG---RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE 372 (386)
Q Consensus 296 l~e~g~d~l~~d~~~dl~e~---~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E 372 (386)
..+.|+|.+.+.+..++..+ ++..+-.+...||+.+ .++|++.+.++++++.+.. |+.++.+- +...-|.+
T Consensus 175 a~~~Gad~i~~~~~~~~~~l~~i~~~~~ipvva~GGi~~----~~~~~~~~~~~~~~~~Ga~-gv~vg~~i-~~~~~~~~ 248 (273)
T 2qjg_A 175 GAELGADIVKTSYTGDIDSFRDVVKGCPAPVVVAGGPKT----NTDEEFLQMIKDAMEAGAA-GVAVGRNI-FQHDDVVG 248 (273)
T ss_dssp HHHTTCSEEEECCCSSHHHHHHHHHHCSSCEEEECCSCC----SSHHHHHHHHHHHHHHTCS-EEECCHHH-HTSSSHHH
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCCc-EEEeeHHh-hCCCCHHH
Confidence 56789998877765676544 4445555777888864 3588998889988876533 44443321 12234677
Q ss_pred HHHHHHHHHHh
Q 016596 373 NVAHFFEVAKA 383 (386)
Q Consensus 373 ni~a~~~a~~~ 383 (386)
.++++.+.+++
T Consensus 249 ~~~~l~~~~~~ 259 (273)
T 2qjg_A 249 ITRAVCKIVHE 259 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 78888777665
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.59 E-value=3 Score=39.09 Aligned_cols=155 Identities=16% Similarity=0.105 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++++||++.+++.- ++-.++.++...++|+|++
T Consensus 90 ~~vi~~~ve~~~grvpViaGvg~~s------------------------------------t~eai~la~~A~~~Gadav 133 (332)
T 2r8w_A 90 RRAIEAAATILRGRRTLMAGIGALR------------------------------------TDEAVALAKDAEAAGADAL 133 (332)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECCSS------------------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3445555666677899988776531 1223355666778999999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCC----
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVD---- 311 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~d---- 311 (386)
.+.-|...-.|++ =+.-|++++.++. +.|++++.. |.. . .+..|.+.+ +++.+ +...|
T Consensus 134 lv~~P~Y~~~s~~----~l~~~f~~VA~a~-----~lPiilYn~P~~tg~~l~~e~~~~La~~p-nIvgiKdssgd~~~~ 203 (332)
T 2r8w_A 134 LLAPVSYTPLTQE----EAYHHFAAVAGAT-----ALPLAIYNNPTTTRFTFSDELLVRLAYIP-NIRAIKMPLPADADY 203 (332)
T ss_dssp EECCCCSSCCCHH----HHHHHHHHHHHHC-----SSCEEEECCHHHHCCCCCHHHHHHHHTST-TEEEEEECCCTTCCH
T ss_pred EECCCCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEeCccccCcCCCHHHHHHHHcCC-CEEEEEeCCCCchhH
Confidence 9877765445543 3555777887765 468888763 432 2 245555553 56666 44457
Q ss_pred HHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 312 MAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 312 l~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
+..+.+.. +++..+. .|..+. ....+. .|+.|+|-+.+|- -|+-+.+|+++++
T Consensus 204 ~~~~~~l~~~~~~~f~v~--------~G~D~~----~l~~l~-~G~~G~is~~anv-----~P~~~~~l~~a~~ 259 (332)
T 2r8w_A 204 AGELARLRPKLSDDFAIG--------YSGDWG----CTDATL-AGGDTWYSVVAGL-----LPVPALQLMRAAQ 259 (332)
T ss_dssp HHHHHHHTTTSCTTCEEE--------ECCHHH----HHHHHH-TTCSEEEESGGGT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEE--------eCchHH----HHHHHH-CCCCEEEeCHHHh-----CHHHHHHHHHHHH
Confidence 77766654 2222222 344322 222333 3456777776653 4566667776654
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.50 E-value=6.7 Score=36.41 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcC----CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WAT----ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERL 296 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~----~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l 296 (386)
+..++.++.+++.|||.|-++-. .+. .+|++.=.+-+.|..+.+.+.. ++|+.+=+ ... .++.-
T Consensus 49 ~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-----~vpISIDT--~~~~Va~aA 121 (314)
T 3tr9_A 49 NSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-----PQLISVDT--SRPRVMREA 121 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-----CSEEEEEC--SCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-----CCeEEEeC--CCHHHHHHH
Confidence 44556677899999999998742 223 5777665566777666555432 45654433 222 46666
Q ss_pred HhcCCCEEE-cCC--CCCHHHHHHHhCCCeeEEecC-CcCcc-CC----CHHHHHHHHHHHHHHc---C--CCCeEEecC
Q 016596 297 ALTGVDVVS-LDW--TVDMAEGRRRLGPDVAVQGNV-DPGAL-FG----SKDFITNRINDTVRKA---G--RWKHILNLG 362 (386)
Q Consensus 297 ~e~g~d~l~-~d~--~~dl~e~~~~~g~~~~l~G~v-d~~~l-~g----t~eev~~~v~~~i~~~---~--~~g~Ils~g 362 (386)
.+.|+++++ +.. ...+.++..++|-.+++|=.- .|..+ .. -.+|+.+..++.++.+ | ....||-||
T Consensus 122 l~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG 201 (314)
T 3tr9_A 122 VNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPG 201 (314)
T ss_dssp HHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECC
T ss_pred HHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC
Confidence 778999985 422 236777778888777776421 23332 11 1356677666666654 3 247999999
Q ss_pred CC---CCCCCcHHHHHHH
Q 016596 363 HG---IKVGTPEENVAHF 377 (386)
Q Consensus 363 c~---i~~~tp~Eni~a~ 377 (386)
-+ +. .+...|+..+
T Consensus 202 ~G~~~F~-Kt~~~n~~lL 218 (314)
T 3tr9_A 202 FGQGNYG-KNVSENFYLL 218 (314)
T ss_dssp CCSGGGC-CCHHHHHHHH
T ss_pred CCchhhc-CCHHHHHHHH
Confidence 87 53 4556676443
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=92.47 E-value=6.3 Score=36.08 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++...+..++.+||++.+++.- ++-.++.++...++|+|++.
T Consensus 59 ~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadavl 102 (292)
T 3daq_A 59 LILKTVIDLVDKRVPVIAGTGTND------------------------------------TEKSIQASIQAKALGADAIM 102 (292)
T ss_dssp HHHHHHHHHHTTSSCEEEECCCSC------------------------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCCcEEEeCCccc------------------------------------HHHHHHHHHHHHHcCCCEEE
Confidence 445555666677889888766441 22233455567788999999
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHHHH
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAEGR 316 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e~~ 316 (386)
+.-|.-.-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+....
T Consensus 103 v~~P~y~~~~~~----~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK~ssgd~~~~~ 172 (292)
T 3daq_A 103 LITPYYNKTNQR----GLVKHFEAIADAV-----KLPVVLYNVPSRTNMTIEPETVEILSQHP-YIVALKDATNDFEYLE 172 (292)
T ss_dssp EECCCSSCCCHH----HHHHHHHHHHHHH-----CSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEECCCCHHHHH
T ss_pred ECCCCCCCCCHH----HHHHHHHHHHHhC-----CCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEEEeCCCCHHHHH
Confidence 877765444543 3555888998887 368888764 332 2 245666654 67666 4445776665
Q ss_pred HHh---CC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 317 RRL---GP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 317 ~~~---g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
+.. ++ +..+..|-|... ...+. .|+.|+|-+.++ .-|+-+.+|+++.+
T Consensus 173 ~~~~~~~~~~f~v~~G~d~~~------------~~~l~-~G~~G~is~~~n-----~~P~~~~~l~~a~~ 224 (292)
T 3daq_A 173 EVKKRIDTNSFALYSGNDDNV------------VEYYQ-RGGQGVISVIAN-----VIPKEFQALYDAQQ 224 (292)
T ss_dssp HHHTTSCTTTSEEEESCGGGH------------HHHHH-TTCCEEEESGGG-----TCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEECCHHHH------------HHHHh-cCCCEEEeCHHH-----hhHHHHHHHHHHHH
Confidence 543 44 444444444321 11222 234566655543 34566667776654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.46 E-value=6.4 Score=36.14 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++++||+..+++.- ++-.++.++...++|+|++
T Consensus 63 ~~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadav 106 (297)
T 3flu_A 63 TAVIEAVVKHVAKRVPVIAGTGANN------------------------------------TVEAIALSQAAEKAGADYT 106 (297)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCcC------------------------------------HHHHHHHHHHHHHcCCCEE
Confidence 3445556666677889888766541 2223456666778999999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHHH
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAEG 315 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e~ 315 (386)
.+.-|.-.-.|.+ =+.-|++++.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+...
T Consensus 107 lv~~P~y~~~~~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiKdssgd~~~~ 176 (297)
T 3flu_A 107 LSVVPYYNKPSQE----GIYQHFKTIAEAT-----SIPMIIYNVPGRTVVSMTNDTILRLAEIP-NIVGVKEASGNIGSN 176 (297)
T ss_dssp EEECCCSSCCCHH----HHHHHHHHHHHHC-----CSCEEEEECHHHHSSCCCHHHHHHHTTST-TEEEEEECSCCHHHH
T ss_pred EECCCCCCCCCHH----HHHHHHHHHHHhC-----CCCEEEEECCchhccCCCHHHHHHHHcCC-CEEEEEeCCCCHHHH
Confidence 9877765444543 3455788888876 468888764 332 2 244555554 56665 344566544
Q ss_pred ---HHHhCCCeeEEecCCc
Q 016596 316 ---RRRLGPDVAVQGNVDP 331 (386)
Q Consensus 316 ---~~~~g~~~~l~G~vd~ 331 (386)
.+..+++..+..|-|.
T Consensus 177 ~~~~~~~~~~f~v~~G~d~ 195 (297)
T 3flu_A 177 IELINRAPEGFVVLSGDDH 195 (297)
T ss_dssp HHHHHHSCTTCEEEECCGG
T ss_pred HHHHHhcCCCeEEEECcHH
Confidence 4555666666555543
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=92.40 E-value=1.1 Score=41.34 Aligned_cols=137 Identities=9% Similarity=0.017 Sum_probs=88.0
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC------CcchH----HHHHhcCC
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG------SGGLL----ERLALTGV 301 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG------~~~~l----~~l~e~g~ 301 (386)
++..++.|||.|.+.-.+++ + . +.....-..++++.++++ |.|+++-.+- +...+ ..-.++|+
T Consensus 131 ve~Av~~GAdaV~~~i~~Gs---~-~-~~~~l~~i~~v~~~a~~~--GlpvIie~~~G~~~~~d~e~i~~aariA~elGA 203 (295)
T 3glc_A 131 MDDAVRLNSCAVAAQVYIGS---E-Y-EHQSIKNIIQLVDAGMKV--GMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGA 203 (295)
T ss_dssp HHHHHHTTCSEEEEEECTTS---T-T-HHHHHHHHHHHHHHHHTT--TCCEEEEECC----CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCEEEEEEECCC---C-c-HHHHHHHHHHHHHHHHHc--CCEEEEECCCCCccCCCHHHHHHHHHHHHHhCC
Confidence 34456899999887544442 1 1 223444578889999887 5788875432 11112 22347899
Q ss_pred CEEEcCCC-CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHHHHHHH
Q 016596 302 DVVSLDWT-VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENVAHFFE 379 (386)
Q Consensus 302 d~l~~d~~-~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni~a~~~ 379 (386)
|.+-.... .+++++.+..+-.+.+.||+. .+.++..+.+++.++.+ ..|.+++. .+ ..+-|.+-++++.+
T Consensus 204 D~VKt~~t~e~~~~vv~~~~vPVv~~GG~~-----~~~~~~l~~v~~ai~aG-A~Gv~vGR--nI~q~~dp~~~~~al~~ 275 (295)
T 3glc_A 204 QIIKTYYVEKGFERIVAGCPVPIVIAGGKK-----LPEREALEMCWQAIDQG-ASGVDMGR--NIFQSDHPVAMMKAVQA 275 (295)
T ss_dssp SEEEEECCTTTHHHHHHTCSSCEEEECCSC-----CCHHHHHHHHHHHHHTT-CSEEEESH--HHHTSSSHHHHHHHHHH
T ss_pred CEEEeCCCHHHHHHHHHhCCCcEEEEECCC-----CCHHHHHHHHHHHHHhC-CeEEEeHH--HHhcCcCHHHHHHHHHH
Confidence 99866543 467888776655577788874 36789999999999864 33555543 33 23456777777777
Q ss_pred HHHh
Q 016596 380 VAKA 383 (386)
Q Consensus 380 a~~~ 383 (386)
.+++
T Consensus 276 ivh~ 279 (295)
T 3glc_A 276 VVHH 279 (295)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7665
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.20 E-value=6 Score=36.72 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++++||+..+++.- ++-.++.++...++|+|++
T Consensus 78 ~~v~~~~v~~~~grvpViaGvg~~s------------------------------------t~~ai~la~~A~~~Gadav 121 (315)
T 3si9_A 78 KRIIELCVEQVAKRVPVVAGAGSNS------------------------------------TSEAVELAKHAEKAGADAV 121 (315)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 4455556666667788877765431 2223456667778999999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHh-cCCCEEEc-CCCCCH--
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLAL-TGVDVVSL-DWTVDM-- 312 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e-~g~d~l~~-d~~~dl-- 312 (386)
.+.-|.-.-.|++ =+.-|++.+.++. +.|++++.. |.. . .+..+.+ .+ +++.+ +...|+
T Consensus 122 lv~~P~y~~~~~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nIvgiKdssgd~~~ 191 (315)
T 3si9_A 122 LVVTPYYNRPNQR----GLYTHFSSIAKAI-----SIPIIIYNIPSRSVIDMAVETMRDLCRDFK-NIIGVKDATGKIER 191 (315)
T ss_dssp EEECCCSSCCCHH----HHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECSCCTHH
T ss_pred EECCCCCCCCCHH----HHHHHHHHHHHcC-----CCCEEEEeCchhhCCCCCHHHHHHHHhhCC-CEEEEEeCCCCHHH
Confidence 9877765445543 3456788888876 468888864 332 2 2455666 65 66666 333454
Q ss_pred -HHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 313 -AEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 313 -~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
.++.+..+++..+..|-|... ...+. .|+.|+|-+.++- -|+-+.+|+++++
T Consensus 192 ~~~l~~~~~~~f~v~~G~d~~~------------l~~l~-~G~~G~is~~an~-----~P~~~~~l~~a~~ 244 (315)
T 3si9_A 192 ASEQREKCGKDFVQLSGDDCTA------------LGFNA-HGGVGCISVSSNV-----APKLCAQLHAACL 244 (315)
T ss_dssp HHHHHHHHCSSSEEEESCGGGH------------HHHHH-TTCCEEEESGGGT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEecCHHHH------------HHHHH-cCCCEEEecHHHh-----hHHHHHHHHHHHH
Confidence 455555666666655554321 12222 2445677555433 3566666666654
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=2 Score=41.44 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCE--EEEe-cCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----
Q 016596 219 ALLRKFTTSMAKYVQYQADNGAQA--VQIF-DSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---- 291 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G~d~--i~i~-d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---- 291 (386)
++.+.+.++....++.+.+.|+.. +.+. +...++.+...++++ .-+++..++++|+..++.++++|.+....
T Consensus 134 ~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~l-a~ll~ag~~aVR~v~p~~~V~ih~~~~~~~~~~ 212 (399)
T 1ur4_A 134 DKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKM-SQLFNAGSQAVRETDSNILVALHFTNPETSGRY 212 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHH-HHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHH-HHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHH
Confidence 455555666666677777777654 4443 333445444444433 35777888888888778889999985421
Q ss_pred --hHHHHHhcC--CCEEEcCCCC----C-------HHHHHHHhCCCeeEE--ecCCcC---------------cc--CCC
Q 016596 292 --LLERLALTG--VDVVSLDWTV----D-------MAEGRRRLGPDVAVQ--GNVDPG---------------AL--FGS 337 (386)
Q Consensus 292 --~l~~l~e~g--~d~l~~d~~~----d-------l~e~~~~~g~~~~l~--G~vd~~---------------~l--~gt 337 (386)
+++.+...| +|+|++.... . |.++.+++|+.+.|. |--... .. --|
T Consensus 213 ~~~~d~l~~~g~d~DvIG~syYp~W~~~l~~l~~~l~~l~~rygKpV~v~EtG~~~~~~~~d~~~n~~~~~~~~~~~~~s 292 (399)
T 1ur4_A 213 AWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTSVADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVT 292 (399)
T ss_dssp HHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHHHHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSS
T ss_pred HHHHHHHHHcCCCcCeEeEecCccchhhHHHHHHHHHHHHHHhCCcEEEEEecCCccCCCCCCcccccccccccCCCCCC
Confidence 247777665 6788664332 2 566777888776652 221110 01 136
Q ss_pred HHHHHHHHHHHHHHcC-----CCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 338 KDFITNRINDTVRKAG-----RWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 338 ~eev~~~v~~~i~~~~-----~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++.=.+.++++++.+. +.|+..---+-+|.. +.+|...=-.+..++|
T Consensus 293 ~~gQa~~l~~l~~~v~~~~~~g~GvfyWep~w~~~~-~~~~~~~n~~~~~~~g 344 (399)
T 1ur4_A 293 VQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVG-PAHRLEKNKALWETYG 344 (399)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSS-CGGGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccCceEEEEEEccceeccc-ccccccccccccccCC
Confidence 6666777777766542 234444433344432 2355544444444443
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=91.60 E-value=8 Score=35.36 Aligned_cols=155 Identities=21% Similarity=0.216 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++.+||++.+++.- ++-.++.++...++|+|++
T Consensus 57 ~~v~~~~~~~~~gr~pviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadav 100 (291)
T 3tak_A 57 TQVIKEIIRVANKRIPIIAGTGANS------------------------------------TREAIELTKAAKDLGADAA 100 (291)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSS------------------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3445556666677889888766531 1222356666778999999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHHH
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAEG 315 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e~ 315 (386)
.+.-|.-.-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+...
T Consensus 101 lv~~P~y~~~~~~----~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK~ssgd~~~~ 170 (291)
T 3tak_A 101 LLVTPYYNKPTQE----GLYQHYKAIAEAV-----ELPLILYNVPGRTGVDLSNDTAVRLAEIP-NIVGIKDATGDVPRG 170 (291)
T ss_dssp EEECCCSSCCCHH----HHHHHHHHHHHHC-----CSCEEEEECHHHHSCCCCHHHHHHHTTST-TEEEEEECSCCHHHH
T ss_pred EEcCCCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEecccccCCCCCHHHHHHHHcCC-CEEEEEeCCCCHHHH
Confidence 9877764444543 3456788888876 468888865 332 2 244555554 56665 344566544
Q ss_pred ---HHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 316 ---RRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 316 ---~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
.+..+++..+..|-|. . ....+. .|+.|+|-+.++ .-|+-+.+|+++.+
T Consensus 171 ~~~~~~~~~~f~v~~G~d~--------~----~~~~l~-~G~~G~is~~~n-----~~P~~~~~l~~a~~ 222 (291)
T 3tak_A 171 KALIDALNGKMAVYSGDDE--------T----AWELML-LGADGNISVTAN-----IAPKAMSEVCAVAI 222 (291)
T ss_dssp HHHHHHHTTSSEEEECCHH--------H----HHHHHH-TTCCEEEESGGG-----TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEECcHH--------H----HHHHHH-CCCCEEEechhh-----hcHHHHHHHHHHHH
Confidence 4445555444443332 2 122222 234566665554 34566666666654
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=91.22 E-value=1 Score=41.88 Aligned_cols=146 Identities=8% Similarity=0.019 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..+++++.+.++|++.|=+.- +.||+....+.-+ .+++..+.+. ++..+..+. -+..-++...+.|++.
T Consensus 26 ~~e~k~~i~~~L~~~Gv~~IE~g~----~~~~~~~p~~~d~--~~~~~~~~~~-~~~~~~~l~-~~~~~i~~a~~~g~~~ 97 (307)
T 1ydo_A 26 ATEDKITWINQLSRTGLSYIEITS----FVHPKWIPALRDA--IDVAKGIDRE-KGVTYAALV-PNQRGLENALEGGINE 97 (307)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEEE----CSCTTTCGGGTTH--HHHHHHSCCC-TTCEEEEEC-CSHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----CcCcccccccCCH--HHHHHHhhhc-CCCeEEEEe-CCHHhHHHHHhCCcCE
Confidence 355666778888899999886542 3333321111111 1234444433 245555554 2333478888899998
Q ss_pred EEcCCCC-----------CHH----------HHHHHhCCCeeEEecCCcC----cc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 304 VSLDWTV-----------DMA----------EGRRRLGPDVAVQGNVDPG----AL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 304 l~~d~~~-----------dl~----------e~~~~~g~~~~l~G~vd~~----~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
+.+.... +.+ +..+..|. .+.|++-.. .- .-+++.+.+.++++.+.+.+ .+
T Consensus 98 v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~--~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~-~i 174 (307)
T 1ydo_A 98 ACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANL--TTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGIS-EL 174 (307)
T ss_dssp EEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTC--EEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCS-CE
T ss_pred EEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--EEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCC-EE
Confidence 8653211 111 22233443 344544322 11 46788888888888776433 44
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.|.- .+ .-..|+.+..+++++++
T Consensus 175 ~l~D--T~-G~~~P~~v~~lv~~l~~ 197 (307)
T 1ydo_A 175 SLGD--TI-GAANPAQVETVLEALLA 197 (307)
T ss_dssp EEEC--SS-CCCCHHHHHHHHHHHHT
T ss_pred EEcC--CC-CCcCHHHHHHHHHHHHH
Confidence 4432 22 23457778888888775
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.20 E-value=8.8 Score=35.12 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++++||+..+++.- ++-.++.++...++|+|++
T Consensus 56 ~~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~A~~~Gadav 99 (294)
T 2ehh_A 56 EKVIEFAVKRAAGRIKVIAGTGGNA------------------------------------THEAVHLTAHAKEVGADGA 99 (294)
T ss_dssp HHHHHHHHHHHTTSSEEEEECCCSC------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3445555666677889988776531 1223456666778999999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHH-hcCCCEEEc-CCCCCHHH
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLA-LTGVDVVSL-DWTVDMAE 314 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~-e~g~d~l~~-d~~~dl~e 314 (386)
.+.-|...-.|+ +=+.-|++++.++. +.|++++.. |.. . .+..+. +.+ +++.+ +...|+..
T Consensus 100 lv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nivgiKds~gd~~~ 169 (294)
T 2ehh_A 100 LVVVPYYNKPTQ----RGLYEHFKTVAQEV-----DIPIIIYNIPSRTCVEISVDTMFKLASECE-NIVASKESTPNMDR 169 (294)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECCSCHHH
T ss_pred EECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCCcccCcCCCHHHHHHHHhhCC-CEEEEEeCCCCHHH
Confidence 987776544454 33455777777765 468888764 432 2 245555 553 56665 44456654
Q ss_pred ---HHHHhCCCeeEEecCCc
Q 016596 315 ---GRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 315 ---~~~~~g~~~~l~G~vd~ 331 (386)
+++..+++..++.|-|.
T Consensus 170 ~~~~~~~~~~~f~v~~G~d~ 189 (294)
T 2ehh_A 170 ISEIVKRLGESFSVLSGDDS 189 (294)
T ss_dssp HHHHHHHHCTTSEEEESSGG
T ss_pred HHHHHHhcCCCeEEEECcHH
Confidence 44455656666555554
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=91.15 E-value=8.3 Score=35.39 Aligned_cols=126 Identities=21% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|...-.|+ +=+.-|++++.++. +.|++++.. |.. . .+..+.+.+
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p- 154 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCVAGYYNRPSQ----EGLYQHFKMVHDAI-----DIPIIVYNIPPRAVVDIKPETMARLAALP- 154 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCTTTCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHTST-
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHHcCC-
Confidence 456666778999999987766443454 34455777887765 468888764 432 2 244555553
Q ss_pred CEEEc-CCCCCHHH---HHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHH
Q 016596 302 DVVSL-DWTVDMAE---GRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHF 377 (386)
Q Consensus 302 d~l~~-d~~~dl~e---~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~ 377 (386)
+++.+ +...|+.. +++..+++..++.|-|...+ ..+. .|+.|+|-+.++- -|+-+.+|
T Consensus 155 nIvgiKds~gd~~~~~~~~~~~~~~f~v~~G~d~~~l------------~~l~-~G~~G~is~~an~-----~P~~~~~l 216 (297)
T 2rfg_A 155 RIVGVKDATTDLARISRERMLINKPFSFLSGDDMTAI------------AYNA-SGGQGCISVSANI-----APALYGQM 216 (297)
T ss_dssp TEEEEEECSCCTTHHHHHHTTCCSCCEEEESCGGGHH------------HHHH-TTCCEEEESGGGT-----CHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCEEEEeCcHHHHH------------HHHH-CCCCEEEecHHHh-----hHHHHHHH
Confidence 56655 33345444 44444555555555443221 1122 3445666665543 34556666
Q ss_pred HHHHH
Q 016596 378 FEVAK 382 (386)
Q Consensus 378 ~~a~~ 382 (386)
+++++
T Consensus 217 ~~a~~ 221 (297)
T 2rfg_A 217 QTATL 221 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=1.6 Score=41.99 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSL 306 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~ 306 (386)
...++++++.++|++.+.+. .+-.--||..|+.+....++.+.+..++. |.+++-=.. +...++.+.++ ++++-+
T Consensus 157 ~a~~~a~~~k~aGa~~vk~q-~fkprts~~~f~gl~~egl~~L~~~~~~~--Gl~~~te~~-d~~~~~~l~~~-vd~lkI 231 (385)
T 3nvt_A 157 QVAAVAESIKAKGLKLIRGG-AFKPRTSPYDFQGLGLEGLKILKRVSDEY--GLGVISEIV-TPADIEVALDY-VDVIQI 231 (385)
T ss_dssp HHHHHHHHHHHTTCCEEECB-SSCCCSSTTSCCCCTHHHHHHHHHHHHHH--TCEEEEECC-SGGGHHHHTTT-CSEEEE
T ss_pred HHHHHHHHHHHcCCCeEEcc-cccCCCChHhhcCCCHHHHHHHHHHHHHc--CCEEEEecC-CHHHHHHHHhh-CCEEEE
Confidence 34556666777999987642 22111234445555556667777777776 566443222 22347888888 999877
Q ss_pred CCC--CCHHHHHH--HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEe
Q 016596 307 DWT--VDMAEGRR--RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILN 360 (386)
Q Consensus 307 d~~--~dl~e~~~--~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils 360 (386)
... .+..-+++ .+|.-+.+.-|. .+|++|+...+..+...+ ...++|.
T Consensus 232 gs~~~~n~~LL~~~a~~gkPVilk~G~-----~~t~~e~~~Ave~i~~~G-n~~i~L~ 283 (385)
T 3nvt_A 232 GARNMQNFELLKAAGRVDKPILLKRGL-----SATIEEFIGAAEYIMSQG-NGKIILC 283 (385)
T ss_dssp CGGGTTCHHHHHHHHTSSSCEEEECCT-----TCCHHHHHHHHHHHHTTT-CCCEEEE
T ss_pred CcccccCHHHHHHHHccCCcEEEecCC-----CCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 542 45433333 333322222222 589999999988776543 3355554
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=90.96 E-value=2.4 Score=38.42 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=87.3
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC---------CcchH----HHHHh
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG---------SGGLL----ERLAL 298 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG---------~~~~l----~~l~e 298 (386)
++..++.|++.|.+...+++ ..+ +......+++.+.++++ +.|+++.+-- +...+ ....+
T Consensus 98 ve~Ai~~Ga~~v~~~~nig~----~~~-~~~~~~~~~v~~~~~~~--~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~ 170 (263)
T 1w8s_A 98 VEEAVSLGASAVGYTIYPGS----GFE-WKMFEELARIKRDAVKF--DLPLVVESFPRGGKVVNETAPEIVAYAARIALE 170 (263)
T ss_dssp HHHHHHTTCSEEEEEECTTS----TTH-HHHHHHHHHHHHHHHHH--TCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCC----cCH-HHHHHHHHHHHHHHHHc--CCeEEEEeeCCCCccccCCCHHHHHHHHHHHHH
Confidence 44566889999988665542 222 34566778888888887 5787775322 11222 33457
Q ss_pred cCCCEEEcCCCC---CHHHHHHHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHH
Q 016596 299 TGVDVVSLDWTV---DMAEGRRRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEEN 373 (386)
Q Consensus 299 ~g~d~l~~d~~~---dl~e~~~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~En 373 (386)
.|+|.+-..... +++++++..+. .+...||+. .+|.++..+.++..++.+.. |...+. .+ ..+-|.+.
T Consensus 171 ~GAD~vkt~~~~~~e~~~~~~~~~~~~pV~asGGi~----~~~~~~~l~~i~~~~~aGA~-Gvsvgr--aI~~~~dp~~~ 243 (263)
T 1w8s_A 171 LGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPK----TKTEEDFLKQVEGVLEAGAL-GIAVGR--NVWQRRDALKF 243 (263)
T ss_dssp HTCSEEEEECCSSHHHHHHHHHHTTTSCEEEECCSC----CSSHHHHHHHHHHHHHTTCC-EEEESH--HHHTSTTHHHH
T ss_pred cCCCEEEEcCCCCHHHHHHHHHhCCCCeEEEEeCCC----CCCHHHHHHHHHHHHHcCCe-EEEEeh--hhcCCcCHHHH
Confidence 899988665433 45566666666 688899884 24789999999999986544 444432 22 22336666
Q ss_pred HHHHHHHHHh
Q 016596 374 VAHFFEVAKA 383 (386)
Q Consensus 374 i~a~~~a~~~ 383 (386)
++++.+.+++
T Consensus 244 ~~~l~~~v~~ 253 (263)
T 1w8s_A 244 ARALAELVYG 253 (263)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 7777666554
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=90.80 E-value=10 Score=35.03 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++.+||++.+++.- ++-.++.++...++|+|++
T Consensus 70 ~~v~~~~~~~~~gr~pviaGvg~~~------------------------------------t~~ai~la~~A~~~Gadav 113 (307)
T 3s5o_A 70 LEVVSRVRQAMPKNRLLLAGSGCES------------------------------------TQATVEMTVSMAQVGADAA 113 (307)
T ss_dssp HHHHHHHHHTSCTTSEEEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCCcEEEecCCCC------------------------------------HHHHHHHHHHHHHcCCCEE
Confidence 3445556666677788887765431 2223455566778999999
Q ss_pred EEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHH
Q 016596 244 QIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMA 313 (386)
Q Consensus 244 ~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~ 313 (386)
.+.-|... -.|+ +=+.-|++++.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+.
T Consensus 114 lv~~P~y~~~~~s~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdssgd~~ 183 (307)
T 3s5o_A 114 MVVTPCYYRGRMSS----AALIHHYTKVADLS-----PIPVVLYSVPANTGLDLPVDAVVTLSQHP-NIVGMXDSGGDVT 183 (307)
T ss_dssp EEECCCTTGGGCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEECSCCHH
T ss_pred EEcCCCcCCCCCCH----HHHHHHHHHHHhhc-----CCCEEEEeCCcccCCCCCHHHHHHHhcCC-CEEEEEcCCCCHH
Confidence 98666532 1343 34555778887765 468888775 322 2 245556654 66666 4445776
Q ss_pred HHHHH---h-CCCeeEEecCCc
Q 016596 314 EGRRR---L-GPDVAVQGNVDP 331 (386)
Q Consensus 314 e~~~~---~-g~~~~l~G~vd~ 331 (386)
.+.+. . +++..+..|-|.
T Consensus 184 ~~~~~~~~~~~~~f~v~~G~d~ 205 (307)
T 3s5o_A 184 RIGLIVHKTRKQDFQVLAGSAG 205 (307)
T ss_dssp HHHHHHHHTTTSSCEEEESSGG
T ss_pred HHHHHHHhccCCCeEEEeCcHH
Confidence 55443 3 345555555553
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.64 E-value=1.3 Score=40.01 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCCCcEEEE-ecCCcc------hHHHHHhcCCCEEEcCCCC-C--------------------------
Q 016596 266 LKQIVDTVKQTHPDLSLILY-ASGSGG------LLERLALTGVDVVSLDWTV-D-------------------------- 311 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H-~cG~~~------~l~~l~e~g~d~l~~d~~~-d-------------------------- 311 (386)
+++.++.+++.+ ....+-| ..|+.. .+..+.+.|+|++.++... |
T Consensus 4 ~~~~f~~~~~~~-~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~ 82 (262)
T 2ekc_A 4 ISDKFTELKEKR-EKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVL 82 (262)
T ss_dssp HHHHHHHHHHHT-BCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcC-CceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHH
Confidence 455566665543 2233444 477643 2466678899998765321 1
Q ss_pred --HHHHHHHh-CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 312 --MAEGRRRL-GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 312 --l~e~~~~~-g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
+.++++.+ .-.+.+||..+|..-+|. .+.++++.+. |-.|+|+ ++.|+|.+..+++.++++|
T Consensus 83 ~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~----~~f~~~~~~a-G~dgvii-------~dl~~ee~~~~~~~~~~~g 147 (262)
T 2ekc_A 83 ELSETLRKEFPDIPFLLMTYYNPIFRIGL----EKFCRLSREK-GIDGFIV-------PDLPPEEAEELKAVMKKYV 147 (262)
T ss_dssp HHHHHHHHHCTTSCEEEECCHHHHHHHCH----HHHHHHHHHT-TCCEEEC-------TTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCEEEEecCcHHHHhhH----HHHHHHHHHc-CCCEEEE-------CCCCHHHHHHHHHHHHHcC
Confidence 55666665 334555654444211233 2333344333 3235555 2555677777777777776
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=9.3 Score=34.42 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhc--CCC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--GVD 302 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~--g~d 302 (386)
.+...+.++.+++.|||.|-+.-.. ..++++. -+++++..+++.. ++|+.+-+. +...++.-.+. |.+
T Consensus 24 ~~~a~~~a~~~v~~GAdiIDIg~g~-~~v~~~e-------e~~rvv~~i~~~~-~~pisIDT~-~~~v~~aAl~a~~Ga~ 93 (262)
T 1f6y_A 24 PAPVQEWARRQEEGGARALDLNVGP-AVQDKVS-------AMEWLVEVTQEVS-NLTLCLDST-NIKAIEAGLKKCKNRA 93 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEBCC-----CHHH-------HHHHHHHHHHTTC-CSEEEEECS-CHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHCCCcEEEECCCC-CCCChHH-------HHHHHHHHHHHhC-CCeEEEeCC-CHHHHHHHHhhCCCCC
Confidence 4556677888999999999886522 2344433 2334445554432 566655443 22245666666 999
Q ss_pred EEE-cCCCC----CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH---cC--CCCeEEecCCC-CCCC--C
Q 016596 303 VVS-LDWTV----DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK---AG--RWKHILNLGHG-IKVG--T 369 (386)
Q Consensus 303 ~l~-~d~~~----dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~---~~--~~g~Ils~gc~-i~~~--t 369 (386)
+++ +.... .+.++.+++|-.+++|-. +....-.|.++..+..++.++. .| ....|+-||.+ +..+ .
T Consensus 94 iINdvs~~~d~~~~~~~~~a~~~~~vvlmh~-~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~~~~ 172 (262)
T 1f6y_A 94 MINSTNAEREKVEKLFPLAVEHGAALIGLTM-NKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDH 172 (262)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESC-CSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTH
T ss_pred EEEECCCCcccHHHHHHHHHHhCCcEEEEcC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCCCChHH
Confidence 985 44221 355666778776666642 2222223445554555555443 34 35799999986 3222 2
Q ss_pred cHHHHHHHHH
Q 016596 370 PEENVAHFFE 379 (386)
Q Consensus 370 p~Eni~a~~~ 379 (386)
..+.++++-+
T Consensus 173 ~~~~l~~l~~ 182 (262)
T 1f6y_A 173 APEVLKTLQQ 182 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555443
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=8.4 Score=35.40 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhCCCEEEEec-C---CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD-S---WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d-~---~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
..++.++.+++.|||.|-++- + .+..+|++.=-+-+.|..+.+.+ . ++|+.+-+ -+...++.-.+.|++
T Consensus 47 ~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~----~--~vpiSIDT-~~~~Va~aAl~aGa~ 119 (294)
T 2y5s_A 47 DALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRP----L--NVPLSIDT-YKPAVMRAALAAGAD 119 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGG----G--CSCEEEEC-CCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhh----C--CCeEEEEC-CCHHHHHHHHHcCCC
Confidence 344666779999999999875 2 33478887766666677666643 2 35654432 122246666777999
Q ss_pred EEE-cCC--CCCHHHHHHHhCCCeeEEec--CCcCc---c--CCC-HHHHHHHHHHHHHHc---C--CCCeEEecCCCCC
Q 016596 303 VVS-LDW--TVDMAEGRRRLGPDVAVQGN--VDPGA---L--FGS-KDFITNRINDTVRKA---G--RWKHILNLGHGIK 366 (386)
Q Consensus 303 ~l~-~d~--~~dl~e~~~~~g~~~~l~G~--vd~~~---l--~gt-~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~ 366 (386)
+++ +.. ...+.++.+++|-.+++|-. .+... . +.+ .+++.+..++.++.+ | ....||-||-+..
T Consensus 120 iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~ 199 (294)
T 2y5s_A 120 LINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFG 199 (294)
T ss_dssp EEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred EEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCccc
Confidence 995 332 24577777778776777543 22211 1 233 267777777776655 3 2479999998874
Q ss_pred CCCc-HHHHHHHHHHHHh
Q 016596 367 VGTP-EENVAHFFEVAKA 383 (386)
Q Consensus 367 ~~tp-~Eni~a~~~a~~~ 383 (386)
.+. ..|+. +++..++
T Consensus 200 -kt~~~~n~~-ll~~l~~ 215 (294)
T 2y5s_A 200 -KAVVDDNYA-LLAALPD 215 (294)
T ss_dssp -SCTTHHHHH-HHHTGGG
T ss_pred -ccchHHHHH-HHHHHHH
Confidence 555 77764 4444333
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=7.7 Score=36.00 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDS----WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~----~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g 300 (386)
+..++.++.+++.|||.|-++-. .+..+|++.=.+-+.|..+.+.+.. ++|+.+ +-... .++.-.+.|
T Consensus 33 ~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~-----~vpiSI--DT~~~~Va~aAl~aG 105 (314)
T 2vef_A 33 EQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES-----DVLISI--DTWKSQVAEAALAAG 105 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC-----CCEEEE--ECSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-----CceEEE--eCCCHHHHHHHHHcC
Confidence 44556677899999999998752 2235777666666777766665432 456444 32222 467777889
Q ss_pred CCEEE-cCC---CCCHHHHHHHhCCCeeEEec----CCcC--cc------CC---C-----------HHH-HHHHHHHHH
Q 016596 301 VDVVS-LDW---TVDMAEGRRRLGPDVAVQGN----VDPG--AL------FG---S-----------KDF-ITNRINDTV 349 (386)
Q Consensus 301 ~d~l~-~d~---~~dl~e~~~~~g~~~~l~G~----vd~~--~l------~g---t-----------~ee-v~~~v~~~i 349 (386)
++++| +.. ..++.++..++|-.+++|-. .+.. .+ .| | .+| |.+..++.+
T Consensus 106 a~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i 185 (314)
T 2vef_A 106 ADLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERAL 185 (314)
T ss_dssp CCEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHH
Confidence 99995 432 25788888889877888742 2211 00 00 1 444 345555554
Q ss_pred HHc---C--CCCeEEecCCCCCCCCcHHHHHHH
Q 016596 350 RKA---G--RWKHILNLGHGIKVGTPEENVAHF 377 (386)
Q Consensus 350 ~~~---~--~~g~Ils~gc~i~~~tp~Eni~a~ 377 (386)
+.+ | ....||-||-+... +...|+..+
T Consensus 186 ~~a~~~GI~~~~IilDPGiGF~k-t~~~nl~ll 217 (314)
T 2vef_A 186 ARAAEAGIAPENILLDPGIGFGL-TKKENLLLL 217 (314)
T ss_dssp HHHHHHTCCGGGEEEECCTTSSC-CHHHHHHHH
T ss_pred HHHHHcCCChhhEEEeCCCCccc-chHHHHHHH
Confidence 443 4 35799999988754 445676444
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=1.4 Score=40.70 Aligned_cols=145 Identities=10% Similarity=0.049 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++-.+++++.+.++|++.|-+.- +.||+....+ ... .+++..+++. ++.++..+.. +..-++...+.|++.+
T Consensus 26 ~e~k~~i~~~L~~~Gv~~IE~g~----~~~~~~~p~~-~d~-~~~~~~~~~~-~~~~~~~l~~-~~~~i~~a~~ag~~~v 97 (298)
T 2cw6_A 26 TPVKIKLIDMLSEAGLSVIETTS----FVSPKWVPQM-GDH-TEVLKGIQKF-PGINYPVLTP-NLKGFEAAVAAGAKEV 97 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEECCEE----CCCTTTCGGG-TTH-HHHHHHSCCC-TTCBCCEECC-SHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCcCEEEECC----CcCccccccc-CCH-HHHHHHHhhC-CCCEEEEEcC-CHHhHHHHHHCCCCEE
Confidence 45566778888899999875432 2333211100 000 1344444442 2444444442 2224788889999988
Q ss_pred EcCCCCC-H--------------------HHHHHHhCCCeeEEecCCc----Ccc-CCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 305 SLDWTVD-M--------------------AEGRRRLGPDVAVQGNVDP----GAL-FGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 305 ~~d~~~d-l--------------------~e~~~~~g~~~~l~G~vd~----~~l-~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
.+....+ . -+..+..|. .+.+++-. ..- .-+++++.+.++++.+.+.. .+.
T Consensus 98 ~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~--~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~-~i~ 174 (298)
T 2cw6_A 98 VIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANI--SVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCY-EIS 174 (298)
T ss_dssp EEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTC--EEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCS-EEE
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCC-EEE
Confidence 7632221 1 122223443 34444432 111 46788888888777765423 333
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
|. ..+ .-..|+.+..+++++++
T Consensus 175 l~--DT~-G~~~P~~~~~lv~~l~~ 196 (298)
T 2cw6_A 175 LG--DTI-GVGTPGIMKDMLSAVMQ 196 (298)
T ss_dssp EE--ETT-SCCCHHHHHHHHHHHHH
T ss_pred ec--CCC-CCcCHHHHHHHHHHHHH
Confidence 33 222 23456667777777764
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=90.01 E-value=3.9 Score=37.63 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch----HHHHHhc
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL----LERLALT 299 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~----l~~l~e~ 299 (386)
-++-.+++++.+.++|.+.|=+.-+. .+|+.|+. .+++.+.. ++..+..+.-+...- ++.+.+.
T Consensus 25 ~~~~K~~i~~~L~~~Gv~~IE~g~p~---~~~~d~e~-----v~~i~~~~----~~~~i~~l~~~~~~di~~a~~~~~~a 92 (293)
T 3ewb_X 25 DVKEKIQIALQLEKLGIDVIEAGFPI---SSPGDFEC-----VKAIAKAI----KHCSVTGLARCVEGDIDRAEEALKDA 92 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECGG---GCHHHHHH-----HHHHHHHC----CSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---CCccHHHH-----HHHHHHhc----CCCEEEEEecCCHHHHHHHHHHHhhc
Confidence 34556678888889999988765333 36766664 23444433 245555555333222 3444456
Q ss_pred CCCEEEcCC-----------CCCHHHH----------HHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCe
Q 016596 300 GVDVVSLDW-----------TVDMAEG----------RRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 300 g~d~l~~d~-----------~~dl~e~----------~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
|++.+++.. ..+.++. .+..|.++.+ +. ..- ..+++.+.+.++++.+.+ -.
T Consensus 93 g~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~--~~--~d~~~~~~~~~~~~~~~~~~~G---~~ 165 (293)
T 3ewb_X 93 VSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQF--SP--EDATRSDRAFLIEAVQTAIDAG---AT 165 (293)
T ss_dssp SSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEE--EE--ETGGGSCHHHHHHHHHHHHHTT---CC
T ss_pred CCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEE--Ee--ccCCCCCHHHHHHHHHHHHHcC---CC
Confidence 887765421 1222222 2223433322 21 122 567888888888777653 23
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
.++....+- -..|+.+..+++++++
T Consensus 166 ~i~l~DT~G-~~~P~~v~~lv~~l~~ 190 (293)
T 3ewb_X 166 VINIPDTVG-YTNPTEFGQLFQDLRR 190 (293)
T ss_dssp EEEEECSSS-CCCHHHHHHHHHHHHH
T ss_pred EEEecCCCC-CCCHHHHHHHHHHHHH
Confidence 444443433 3456668888887765
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=3 Score=38.44 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhCCCEEEEec-C---CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD-S---WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d-~---~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
..++.++.+++.|||.|-++- + .+..+|++.=-+-+.|..+.+.+ . ++|+.+-+- +...++.-.+.|++
T Consensus 53 ~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~----~--~vpiSIDT~-~~~Va~aAl~aGa~ 125 (294)
T 2dqw_A 53 RALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLS----L--GVPVSVDTR-KPEVAEEALKLGAH 125 (294)
T ss_dssp CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHT----T--CSCEEEECS-CHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh----C--CCeEEEECC-CHHHHHHHHHhCCC
Confidence 344566779999999998875 2 23467776655556666665543 2 456544321 22246666777999
Q ss_pred EEE-cCCC--CCHHHHHHHhCCCeeEEecC--CcCcc-----CCCH-HHHHHHHHHHHHHc---C-CCCeEEecCCCCCC
Q 016596 303 VVS-LDWT--VDMAEGRRRLGPDVAVQGNV--DPGAL-----FGSK-DFITNRINDTVRKA---G-RWKHILNLGHGIKV 367 (386)
Q Consensus 303 ~l~-~d~~--~dl~e~~~~~g~~~~l~G~v--d~~~l-----~gt~-eev~~~v~~~i~~~---~-~~g~Ils~gc~i~~ 367 (386)
+++ +... ..+.++.+++|-.+++|-.= .|..+ +.+. +|+.+..++.++.+ | . ..||-||-++ .
T Consensus 126 iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~-~IilDPG~Gf-~ 203 (294)
T 2dqw_A 126 LLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVP-QVVLDPGFGF-G 203 (294)
T ss_dssp EEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCS-CEEEECCTTS-S
T ss_pred EEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCC-cEEEcCCCCc-c
Confidence 985 3222 24666677788777776531 13222 2332 67777777777665 3 4 7999999886 3
Q ss_pred CCcHHHHHHHHHHHHh
Q 016596 368 GTPEENVAHFFEVAKA 383 (386)
Q Consensus 368 ~tp~Eni~a~~~a~~~ 383 (386)
.+...|+. +++..++
T Consensus 204 kt~~~n~~-ll~~l~~ 218 (294)
T 2dqw_A 204 KLLEHNLA-LLRRLDE 218 (294)
T ss_dssp CCHHHHHH-HHHTHHH
T ss_pred cCHHHHHH-HHHHHHH
Confidence 45556664 3444433
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.91 E-value=2.5 Score=37.83 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCc------CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWA------TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVD 302 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~------~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d 302 (386)
.+.++..++.|++.|++-+... +-++++.+.+. .+++.+..+++ ++++++|- .++...++|+|
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~----a~~l~~l~~~~--~~~liInd-----~~~lA~~~gAd 114 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAA----CEILADAAHRY--GALFAVND-----RADIARAAGAD 114 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHH----HHHHHHHHHHT--TCEEEEES-----CHHHHHHHTCS
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHH----HHHHHHHHHhh--CCEEEEeC-----HHHHHHHhCCC
Confidence 3445567789999999876542 23677776664 34556666665 57877762 34566788999
Q ss_pred EEEcCCC-CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHH
Q 016596 303 VVSLDWT-VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNR 344 (386)
Q Consensus 303 ~l~~d~~-~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~ 344 (386)
.+++... .+..++++.++....+... -.|++|+.+.
T Consensus 115 GVHLg~~dl~~~~~r~~~~~~~~iG~S------~ht~~Ea~~A 151 (243)
T 3o63_A 115 VLHLGQRDLPVNVARQILAPDTLIGRS------THDPDQVAAA 151 (243)
T ss_dssp EEEECTTSSCHHHHHHHSCTTCEEEEE------ECSHHHHHHH
T ss_pred EEEecCCcCCHHHHHHhhCCCCEEEEe------CCCHHHHHHH
Confidence 9998654 5678888887754333222 2566665443
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=89.69 E-value=8.2 Score=35.24 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++...+..++++||+..+++.- ++-.++.++...++|+|++.
T Consensus 57 ~v~~~~~~~~~gr~pviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadavl 100 (289)
T 2yxg_A 57 KVIEKVVDVVNGRVQVIAGAGSNC------------------------------------TEEAIELSVFAEDVGADAVL 100 (289)
T ss_dssp HHHHHHHHHHTTSSEEEEECCCSS------------------------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCCcEEEeCCCCC------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 445555666677899988776531 12234566667789999999
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHH-hcCCCEEEc-CCCCCHHHH
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLA-LTGVDVVSL-DWTVDMAEG 315 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~-e~g~d~l~~-d~~~dl~e~ 315 (386)
+.-|...-.|+ +=+.-|++++.++. +.|++++.. |.. . .+..+. +.+ +++.+ +...|+...
T Consensus 101 v~~P~y~~~s~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nivgiK~s~gd~~~~ 170 (289)
T 2yxg_A 101 SITPYYNKPTQ----EGLRKHFGKVAESI-----NLPIVLYNVPSRTAVNLEPKTVKLLAEEYS-NISAVKEANPNLSQV 170 (289)
T ss_dssp EECCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECCSCTHHH
T ss_pred ECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCcCCCHHHHHHHHHhCC-CEEEEEeCCCCHHHH
Confidence 87776544454 34455777887765 468888764 432 2 245555 553 56655 334455444
Q ss_pred HH
Q 016596 316 RR 317 (386)
Q Consensus 316 ~~ 317 (386)
.+
T Consensus 171 ~~ 172 (289)
T 2yxg_A 171 SE 172 (289)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.68 E-value=2.2 Score=39.25 Aligned_cols=146 Identities=11% Similarity=0.049 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCE
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDV 303 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~ 303 (386)
-++..++.++++.++|++.|-+.-+..+-.-|.+ + ...++++.+.+. ++.++..|. .+..-++...+.|++.
T Consensus 24 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~-----~~~e~~~~i~~~-~~~~v~~l~-~n~~~i~~a~~~G~~~ 95 (295)
T 1ydn_A 24 PTADKIALINRLSDCGYARIEATSFVSPKWVPQL-A-----DSREVMAGIRRA-DGVRYSVLV-PNMKGYEAAAAAHADE 95 (295)
T ss_dssp CHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-T-----THHHHHHHSCCC-SSSEEEEEC-SSHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-c-----CHHHHHHHHHhC-CCCEEEEEe-CCHHHHHHHHHCCCCE
Confidence 3455667777888899999876533222111211 0 122334444443 357777886 3333478888999998
Q ss_pred EEcCC-----------CCC----HHH------HHHHhCCCeeEEecCCcC----c-cCCCHHHHHHHHHHHHHHcCCCCe
Q 016596 304 VSLDW-----------TVD----MAE------GRRRLGPDVAVQGNVDPG----A-LFGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 304 l~~d~-----------~~d----l~e------~~~~~g~~~~l~G~vd~~----~-l~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
+.++- ..+ ++. ..+..|- .+.|.|... . -.-+++++.+.++++.+.+.+ .+
T Consensus 96 V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~--~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d-~i 172 (295)
T 1ydn_A 96 IAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGL--AIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCH-EV 172 (295)
T ss_dssp EEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTC--EEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCS-EE
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC--eEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCC-EE
Confidence 87652 112 221 2223443 455444332 1 257899999999888776434 45
Q ss_pred EEecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 358 ILNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 358 Ils~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
-|+...|+ ..|+.+..+++++++
T Consensus 173 ~l~Dt~G~---~~P~~~~~lv~~l~~ 195 (295)
T 1ydn_A 173 SLGDTIGR---GTPDTVAAMLDAVLA 195 (295)
T ss_dssp EEEETTSC---CCHHHHHHHHHHHHT
T ss_pred EecCCCCC---cCHHHHHHHHHHHHH
Confidence 55544444 356667777777764
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.67 E-value=2 Score=39.84 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=80.0
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec--CCc--------c----hHHHHH
Q 016596 232 VQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS--GSG--------G----LLERLA 297 (386)
Q Consensus 232 ~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c--G~~--------~----~l~~l~ 297 (386)
++..++.|+|.+.+.--++.-.+. .--....+++.+.++++ |.|+++-+- |.. . ....+.
T Consensus 114 ve~a~~~GAdaV~vlv~~~~d~~~----~~~~~~i~~v~~~~~~~--G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~ 187 (304)
T 1to3_A 114 AQAVKRDGAKALKLLVLWRSDEDA----QQRLNMVKEFNELCHSN--GLLSIIEPVVRPPRCGDKFDREQAIIDAAKELG 187 (304)
T ss_dssp HHHHHHTTCCEEEEEEEECTTSCH----HHHHHHHHHHHHHHHTT--TCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEEEEcCCCccH----HHHHHHHHHHHHHHHHc--CCcEEEEEECCCCccccCCChhHHHHHHHHHHH
Confidence 345678899998743222211212 22334678899999987 678776542 221 1 134456
Q ss_pred hcCCCEEEcCCC----CCHH---HHHHH----hCCC-eeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecC---
Q 016596 298 LTGVDVVSLDWT----VDMA---EGRRR----LGPD-VAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLG--- 362 (386)
Q Consensus 298 e~g~d~l~~d~~----~dl~---e~~~~----~g~~-~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~g--- 362 (386)
++|+|.+-+... .+.+ ++.+. .+-. +.+.||+ +++++.+.++..++. +..|++++-.
T Consensus 188 ~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-------~~~~~~~~~~~a~~a-Ga~Gv~vGRaI~q 259 (304)
T 1to3_A 188 DSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGV-------DEKLFPRAVRVAMEA-GASGFLAGRAVWS 259 (304)
T ss_dssp TSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTS-------CTTTHHHHHHHHHHT-TCCEEEESHHHHG
T ss_pred HcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCC-------CHHHHHHHHHHHHHc-CCeEEEEehHHhC
Confidence 789999876653 2443 44444 3444 7778887 456777888888875 4456666542
Q ss_pred CCCCCCCcHHHH--------HHHHHHHHh
Q 016596 363 HGIKVGTPEENV--------AHFFEVAKA 383 (386)
Q Consensus 363 c~i~~~tp~Eni--------~a~~~a~~~ 383 (386)
..+..+-|.+-+ +++.+.+++
T Consensus 260 ~~~~~~dp~~~~~~~~~~~~~~l~~iv~~ 288 (304)
T 1to3_A 260 SVIGLPDTELMLRDVSAPKLQRLGEIVDE 288 (304)
T ss_dssp GGTTCSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHhhchHHHHHHHHHHhc
Confidence 112213334434 788777765
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=89.10 E-value=5 Score=35.32 Aligned_cols=91 Identities=9% Similarity=0.095 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCEEEEecC-CcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe----c--CCcc-hHHHHHhcC
Q 016596 229 AKYVQYQADNGAQAVQIFDS-WATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA----S--GSGG-LLERLALTG 300 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~-~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~----c--G~~~-~l~~l~e~g 300 (386)
.+-++.+.+.|+|++.++-- -.+-+. .+..+++++.++ +.++.+|- | -+.. -++.++++|
T Consensus 79 ~~Di~~~~~~GadGvV~G~Lt~dg~iD--------~~~~~~Li~~a~----~~~vTFHRAFD~~~~~d~~~ale~L~~lG 146 (224)
T 2bdq_A 79 EEDILRAVELESDALVLGILTSNNHID--------TEAIEQLLPATQ----GLPLVFHMAFDVIPKSDQKKSIDQLVALG 146 (224)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSSBC--------HHHHHHHHHHHT----TCCEEECGGGGGSCTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEeeECCCCCcC--------HHHHHHHHHHhC----CCeEEEECchhccCCcCHHHHHHHHHHcC
Confidence 34455678899999987531 122344 466778888775 45889995 3 3333 378999999
Q ss_pred CCEE-EcCCCC---------CHHHHHHHhCCCeeEE--ecCCc
Q 016596 301 VDVV-SLDWTV---------DMAEGRRRLGPDVAVQ--GNVDP 331 (386)
Q Consensus 301 ~d~l-~~d~~~---------dl~e~~~~~g~~~~l~--G~vd~ 331 (386)
++-+ .-.... -++++.+..++++.|+ |||.+
T Consensus 147 v~rILTSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~ 189 (224)
T 2bdq_A 147 FTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTA 189 (224)
T ss_dssp CCEEEECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCT
T ss_pred CCEEECCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCCH
Confidence 9855 222111 1344545556666665 56654
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=89.05 E-value=9.4 Score=34.89 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|...-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+.+.+
T Consensus 86 i~la~~a~~~Gadavlv~~P~y~~~s~~----~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p- 155 (292)
T 2ojp_A 86 ISLTQRFNDSGIVGCLTVTPYYNRPSQE----GLYQHFKAIAEHT-----DLPQILYNVPSRTGCDLLPETVGRLAKVK- 155 (292)
T ss_dssp HHHHHHTTTSSCSEEEEECCCSSCCCHH----HHHHHHHHHHTTC-----SSCEEEECCHHHHSCCCCHHHHHHHHTST-
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEeCcchhccCCCHHHHHHHHcCC-
Confidence 3555666778999999877765444543 3445667776654 468888764 432 2 244555553
Q ss_pred CEEEc-CCCCCHHHHHHHh---CCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHH
Q 016596 302 DVVSL-DWTVDMAEGRRRL---GPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHF 377 (386)
Q Consensus 302 d~l~~-d~~~dl~e~~~~~---g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~ 377 (386)
+++.+ +...|+....+.. +++..++.|-|. .+ ...+. .|+.|+|-+.++- -|+-+.+|
T Consensus 156 nivgiK~s~gd~~~~~~~~~~~~~~f~v~~G~d~--------~~----~~~l~-~G~~G~is~~~n~-----~P~~~~~l 217 (292)
T 2ojp_A 156 NIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDA--------SA----LDFMQ-YGGHGVISVTANV-----AARDMAQM 217 (292)
T ss_dssp TEEEC-CCSCCTHHHHHHHTTSCTTSBCEESCGG--------GH----HHHHH-TTCCEEEESGGGT-----CHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCEEEEECcHH--------HH----HHHHH-CCCcEEEeCHHHh-----hHHHHHHH
Confidence 67766 4445766655544 333333333332 11 11222 3445677666543 34556666
Q ss_pred HHHHH
Q 016596 378 FEVAK 382 (386)
Q Consensus 378 ~~a~~ 382 (386)
+++++
T Consensus 218 ~~a~~ 222 (292)
T 2ojp_A 218 CKLAA 222 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=88.99 E-value=8.6 Score=35.46 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHH-hcC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLA-LTG 300 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~-e~g 300 (386)
++.++...++|+|++.+.-|...-.|+ +=+.-|++++.++. +.|++++.. |.. . .+..+. +.+
T Consensus 97 i~la~~A~~~Gadavlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p 167 (306)
T 1o5k_A 97 LKLVKQAEKLGANGVLVVTPYYNKPTQ----EGLYQHYKYISERT-----DLGIVVYNVPGRTGVNVLPETAARIAADLK 167 (306)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCH----HHHHHHHHHHHTTC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeCccccCcCCCHHHHHHHHHhCC
Confidence 556667778999999987776544454 33445667776654 468888763 432 2 245555 553
Q ss_pred CCEEEc-CCCCCHHHHH---HHhCC---CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHH
Q 016596 301 VDVVSL-DWTVDMAEGR---RRLGP---DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEEN 373 (386)
Q Consensus 301 ~d~l~~-d~~~dl~e~~---~~~g~---~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~En 373 (386)
+++.+ +...|+.... +..++ +..+..|-|...+ ..+. .|+.|+|-+.+|- -|+-
T Consensus 168 -nIvgiKdssgd~~~~~~~~~~~~~~~~~f~v~~G~d~~~l------------~~l~-~G~~G~is~~an~-----~P~~ 228 (306)
T 1o5k_A 168 -NVVGIXEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTF------------YLLC-AGGDGVISVVSNV-----APKQ 228 (306)
T ss_dssp -TEEEEEECCCCHHHHHHHHHHHHHHCTTCEEEESSGGGHH------------HHHH-HTCCEEEESGGGT-----CHHH
T ss_pred -CEEEEeCCCCCHHHHHHHHHhcCCCCCcEEEEECcHHHHH------------HHHH-CCCCEEEecHHHh-----hHHH
Confidence 66666 4445665443 33443 4555555543221 1122 2345666665543 3455
Q ss_pred HHHHHHHHH
Q 016596 374 VAHFFEVAK 382 (386)
Q Consensus 374 i~a~~~a~~ 382 (386)
+.+|+++++
T Consensus 229 ~~~l~~a~~ 237 (306)
T 1o5k_A 229 MVELCAEYF 237 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556665544
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=88.98 E-value=2.8 Score=36.14 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=74.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEcC
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSLD 307 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~d 307 (386)
+++.+.++|+|++.+.+.. .. ...+++++.++++ |.++++-..+-++ .+..+.+.|+|.+.++
T Consensus 69 ~~~~~~~~Gad~v~v~~~~----~~--------~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 69 ESQLLFDAGADYVTVLGVT----DV--------LTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHHHTTCSEEEEETTS----CH--------HHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCC----Ch--------hHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCCEEEEc
Confidence 3778889999999885432 11 2456777888887 4565543222222 3677888999988654
Q ss_pred CC--------CC---HHHHHHHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHH
Q 016596 308 WT--------VD---MAEGRRRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVA 375 (386)
Q Consensus 308 ~~--------~d---l~e~~~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~ 375 (386)
.. .+ ++++++.+++ .+...|||++. .++++++. |-.++++++.= +..+-|.+.++
T Consensus 135 ~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~-----------~~~~~~~~-Gad~vvvGsai-~~~~d~~~~~~ 201 (211)
T 3f4w_A 135 TGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQ-----------TVKDYALL-GPDVVIVGSAI-THAADPAGEAR 201 (211)
T ss_dssp CCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTT-----------THHHHHTT-CCSEEEECHHH-HTCSSHHHHHH
T ss_pred CCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHH-----------HHHHHHHc-CCCEEEECHHH-cCCCCHHHHHH
Confidence 21 13 3455666533 35668888642 23334433 33356665431 12234778888
Q ss_pred HHHHHHHh
Q 016596 376 HFFEVAKA 383 (386)
Q Consensus 376 a~~~a~~~ 383 (386)
.+.+..++
T Consensus 202 ~l~~~~~~ 209 (211)
T 3f4w_A 202 KISQVLLQ 209 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88777664
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=88.44 E-value=7.3 Score=35.29 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC-CCCHHHHHHhh---------HHHHHHHHHHHHhhCCCCcEEEEecCCc------c
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT-ELSPVDFEEFS---------LPYLKQIVDTVKQTHPDLSLILYASGSG------G 291 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~-~iSp~~f~ef~---------~P~~k~l~~~i~~~~~~~~~~~H~cG~~------~ 291 (386)
..+.++++.++|+|.|-+.-|+.. +..-...++-. ....-++++.+++....+|+++..--|. .
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence 456677788999999887644432 23322223221 1123345555655422568666543221 2
Q ss_pred -hHHHHHhcCCCEEEc
Q 016596 292 -LLERLALTGVDVVSL 306 (386)
Q Consensus 292 -~l~~l~e~g~d~l~~ 306 (386)
+++.+++.|+|++-+
T Consensus 114 ~f~~~~~~aGvdgvii 129 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLI 129 (267)
T ss_dssp HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCEEEe
Confidence 467778899998654
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=4 Score=41.01 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=63.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
+.+++.++.|++.|++-+... +.+.|.+ ..+++.+..+++ ++++++|- .++...++|+|.+|+.+.
T Consensus 29 ~~ve~al~~Gv~~vQlR~K~~---~~~~~~~----~a~~l~~l~~~~--~v~liIND-----~~dlA~~~gAdGVHLgq~ 94 (540)
T 3nl6_A 29 GQVEAGLQNGVTLVQIREKDA---DTKFFIE----EALQIKELCHAH--NVPLIIND-----RIDVAMAIGADGIHVGQD 94 (540)
T ss_dssp HHHHHHHHTTCSEEEECCSSS---CTTHHHH----HHHHHHHHHHHT--TCCEEECS-----CSHHHHHTTCSEEEECTT
T ss_pred HHHHHHHHCCCCEEEEecCCC---CHHHHHH----HHHHHHHHHHhc--CCEEEEeC-----cHHHHHHcCCCEEEEChh
Confidence 445567789999999876542 4444433 345555666665 57877763 457778899999999764
Q ss_pred -CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHH
Q 016596 310 -VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRI 345 (386)
Q Consensus 310 -~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v 345 (386)
.++.++++.+|.+..+...+ .|++|+++..
T Consensus 95 dl~~~~ar~~lg~~~iiG~S~------ht~eea~~A~ 125 (540)
T 3nl6_A 95 DMPIPMIRKLVGPDMVIGWSV------GFPEEVDELS 125 (540)
T ss_dssp SSCHHHHHHHHCTTSEEEEEE------CSHHHHHHHH
T ss_pred hcCHHHHHHHhCCCCEEEEEC------CCHHHHHHHH
Confidence 57899999988654443222 3677765543
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.30 E-value=2.4 Score=39.10 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H---HHHHhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L---ERLALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l---~~l~e~g~d~ 303 (386)
..++++.+.++|+|.|.++|..+. ..|+...+. ++.+++..+++++.+|.+.+... . -.-.+.|++.
T Consensus 161 ~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~~~~l--------v~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~ 231 (302)
T 2ftp_A 161 VAWVARELQQMGCYEVSLGDTIGV-GTAGATRRL--------IEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAV 231 (302)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSC-CCHHHHHHH--------HHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-cCHHHHHHH--------HHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCE
Confidence 344445567889999999987764 678776654 44455443346899999776652 3 2335689998
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
++.
T Consensus 232 vd~ 234 (302)
T 2ftp_A 232 FDS 234 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 853
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=88.22 E-value=16 Score=33.93 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCEEEEe-cCCcCCCCHH----HHHHhhHHHHHHHHHHHHhhC--CCCcEEEEecC
Q 016596 218 HALLRKFTTSMAKYVQYQADNG--AQAVQIF-DSWATELSPV----DFEEFSLPYLKQIVDTVKQTH--PDLSLILYASG 288 (386)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~e~G--~d~i~i~-d~~~~~iSp~----~f~ef~~P~~k~l~~~i~~~~--~~~~~~~H~cG 288 (386)
.++.+.+.++....++.+.+.| ++.+++. +...+++-|. .++ -...++++.++++|+.. ++.++++|.+.
T Consensus 104 ~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~~-~l~~~~~~a~~avr~~~~~p~~~v~~h~~~ 182 (334)
T 1fob_A 104 GTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYS-NIGALLHSGAWGVKDSNLATTPKIMIHLDD 182 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHH-HHHHHHHHHHHHHHTSCCSSCCEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhHH-HHHHHHHHHHHHHHHhccCCCCeEEEEcCC
Confidence 3456666666666667777776 4566555 3444444221 123 44567888888999876 66688999983
Q ss_pred --Ccc----hHHHHHhcC------CCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCC
Q 016596 289 --SGG----LLERLALTG------VDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWK 356 (386)
Q Consensus 289 --~~~----~l~~l~e~g------~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g 356 (386)
+.. +++.+.+.| +|++++....- +. + .++++.+.+.++++.+..+..-
T Consensus 183 ~~~~~~~~~~~~~~~~~g~~~~~~~DvIG~syYp~-------w~----------~---~~~~~~l~~~l~~~~~rygKpv 242 (334)
T 1fob_A 183 GWSWDQQNYFYETVLATGELLSTDFDYFGVSYYPF-------YS----------A---SATLASLKTSLANLQSTYDKPV 242 (334)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCGGGCCEEEEECCSS-------SC----------T---TCCHHHHHHHHHHHHHHHCCCE
T ss_pred cCchHHHHHHHHHHHHcCCCCCCCcCEEEEeCCCC-------cC----------C---CCCHHHHHHHHHHHHHHHCCCE
Confidence 221 246666655 47776654431 00 0 2578888888888878776556
Q ss_pred eEEecCCCC
Q 016596 357 HILNLGHGI 365 (386)
Q Consensus 357 ~Ils~gc~i 365 (386)
+|.=+||.-
T Consensus 243 ~itEtG~~~ 251 (334)
T 1fob_A 243 VVVETNWPV 251 (334)
T ss_dssp EEEECCCCS
T ss_pred EEEEccccc
Confidence 777777754
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=87.86 E-value=16 Score=33.48 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|...-.|+ +=+.-|++++.++.. +.|++++.. |.. . .+..+.+.+
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~s~----~~l~~~f~~va~a~~----~lPiilYn~P~~tg~~l~~~~~~~La~~p- 166 (303)
T 2wkj_A 96 QQLAASAKRYGFDAVSAVTPFYYPFSF----EEHCDHYRAIIDSAD----GLPMVVYNIPALSGVKLTLDQINTLVTLP- 166 (303)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCH----HHHHHHHHHHHHHHT----TCCEEEEECHHHHCCCCCHHHHHHHHTST-
T ss_pred HHHHHHHHhCCCCEEEecCCCCCCCCH----HHHHHHHHHHHHhCC----CCCEEEEeCccccCCCCCHHHHHHHhcCC-
Confidence 456666778899999887776543454 344557788888763 268888763 432 2 244555543
Q ss_pred CEEEc-CCCCCHHHHHHHh--CCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDMAEGRRRL--GPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl~e~~~~~--g~~~~l~G~vd~ 331 (386)
+++.+ +...|+....+.. +++..+..|-|.
T Consensus 167 nIvgiK~s~gd~~~~~~~~~~~~~f~v~~G~d~ 199 (303)
T 2wkj_A 167 GVGALXQTSGDLYQMEQIRREHPDLVLYNGYDN 199 (303)
T ss_dssp TEEEEEECCCCHHHHHHHHHHCTTCEEEECCGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCeEEEeCcHH
Confidence 56655 4445654433322 345655555554
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.80 E-value=17 Score=33.47 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++...+..++.+||+..+++.- ++-.++.++...++|+|++.
T Consensus 73 ~v~~~~~~~~~grvpviaGvg~~s------------------------------------t~~ai~la~~A~~~Gadavl 116 (304)
T 3cpr_A 73 ELLKAVREEVGDRAKLIAGVGTNN------------------------------------TRTSVELAEAAASAGADGLL 116 (304)
T ss_dssp HHHHHHHHHHTTTSEEEEECCCSC------------------------------------HHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhCCCCcEEecCCCCC------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 344555666677889988776531 22234555667789999999
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHHHH
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAEGR 316 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e~~ 316 (386)
+.-|.-.-.|+ +=+.-|++.+.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+....
T Consensus 117 v~~P~y~~~~~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdssgd~~~~~ 186 (304)
T 3cpr_A 117 VVTPYYSKPSQ----EGLLAHFGAIAAAT-----EVPICLYDIPGRSGIPIESDTMRRLSELP-TILAVXDAKGDLVAAT 186 (304)
T ss_dssp EECCCSSCCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSSCCCHHHHHHHTTST-TEEEEEECSCCHHHHH
T ss_pred ECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCcCCCHHHHHHHHcCC-CEEEEecCCCCHHHHH
Confidence 87776444453 44556778887765 468887764 432 2 244455543 56666 4445766554
Q ss_pred HHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 317 RRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 317 ~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
+.... +..+..|-|... ...+. .|+.|+|-+.+|- -|+-+.+|+++++
T Consensus 187 ~~~~~~~f~v~~G~d~~~------------l~~l~-~G~~G~is~~an~-----~P~~~~~l~~a~~ 235 (304)
T 3cpr_A 187 SLIKETGLAWYSGDDPLN------------LVWLA-LGGSGFISVIGHA-----APTALRELYTSFE 235 (304)
T ss_dssp HHHHHHCCEEEECSGGGH------------HHHHH-TTCCEEEESGGGT-----CHHHHHHHHHHHH
T ss_pred HHHHhcCEEEEECcHHHH------------HHHHH-CCCCEEEecHHHh-----hHHHHHHHHHHHH
Confidence 43311 344444343321 11122 3455777766653 3455666666554
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.77 E-value=8.2 Score=35.47 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-c----c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-G----G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~----~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|...-.|++. +.-|++.+.++. +.|++++..-. + . .+..+.+.+
T Consensus 89 i~la~~a~~~Gadavlv~~P~y~~~~~~~----l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p- 158 (300)
T 3eb2_A 89 VAQAKLYEKLGADGILAILEAYFPLKDAQ----IESYFRAIADAV-----EIPVVIYTNPQFQRSDLTLDVIARLAEHP- 158 (300)
T ss_dssp HHHHHHHHHHTCSEEEEEECCSSCCCHHH----HHHHHHHHHHHC-----SSCEEEEECTTTCSSCCCHHHHHHHHTST-
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHH----HHHHHHHHHHHC-----CCCEEEEECccccCCCCCHHHHHHHHcCC-
Confidence 45556677889999988777654445433 445778888776 36777776532 1 1 134445543
Q ss_pred CEEEc-CCCCCHH---HHHHHhCCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDMA---EGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl~---e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+. ++.+..+++..+..|-|.
T Consensus 159 nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~ 192 (300)
T 3eb2_A 159 RIRYIKDASTNTGRLLSIINRCGDALQVFSASAH 192 (300)
T ss_dssp TEEEEEECSSBHHHHHHHHHHHGGGSEEEECTTS
T ss_pred CEEEEEcCCCCHHHHHHHHHHcCCCeEEEeCcHH
Confidence 56655 3334554 444445555666555554
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=87.74 E-value=11 Score=35.52 Aligned_cols=116 Identities=12% Similarity=0.173 Sum_probs=71.6
Q ss_pred HHHH--hhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCC--CCCHHHHHHH--hCCCeeEEecCC
Q 016596 257 DFEE--FSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDW--TVDMAEGRRR--LGPDVAVQGNVD 330 (386)
Q Consensus 257 ~f~e--f~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~--~~dl~e~~~~--~g~~~~l~G~vd 330 (386)
.|++ +-+..++.|.++.++. |.+ ++=..=+..-++.+.+++++++-+.. ..|+.-+++. .|+-+.|.-|
T Consensus 69 ~~~~~el~~e~~~~L~~~~~~~--Gi~-~~st~fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstG-- 143 (350)
T 3g8r_A 69 RFEETRLQPEQMQKLVAEMKAN--GFK-AICTPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTA-- 143 (350)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHT--TCE-EEEEECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECT--
T ss_pred HHHHhcCCHHHHHHHHHHHHHc--CCc-EEeccCCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECC--
Confidence 4553 7788899999999997 444 22222233358999999999997754 3576666553 3433333222
Q ss_pred cCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH--HHHHHHHHHHhh
Q 016596 331 PGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE--NVAHFFEVAKAI 384 (386)
Q Consensus 331 ~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E--ni~a~~~a~~~y 384 (386)
..|.+|+...+.-+.+. + ..+||- =|.-...||++ |+.+|-...+.|
T Consensus 144 ----mstl~Ei~~Ave~i~~~-g-~~viLl-hC~s~YPt~~~~~nL~aI~~Lk~~f 192 (350)
T 3g8r_A 144 ----GARREDIDKVVSFMLHR-G-KDLTIM-HCVAEYPTPDDHLHLARIKTLRQQY 192 (350)
T ss_dssp ----TCCHHHHHHHHHHHHTT-T-CCEEEE-ECCCCSSCCGGGCCTTHHHHHHHHC
T ss_pred ----CCCHHHHHHHHHHHHHc-C-CCEEEE-ecCCCCCCCcccCCHHHHHHHHHHC
Confidence 36899999988776654 3 357774 24433445554 565655444444
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.59 E-value=17 Score=34.41 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCc--------chHHHHHhc
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSG--------GLLERLALT 299 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~--------~~l~~l~e~ 299 (386)
..+|++.+.+.|...||.+ +.+|+.-.+-+...++++++.+++. |..+++-+-... ..+..|.++
T Consensus 19 ~~~yi~~a~~~Gf~~IFTS-----L~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DIsp~~l~~Lg~s~~dl~~~~~l 91 (372)
T 2p0o_A 19 TIIYIKKMKALGFDGIFTS-----LHIPEDDTSLYRQRLTDLGAIAKAE--KMKIMVDISGEALKRAGFSFDELEPLIEL 91 (372)
T ss_dssp HHHHHHHHHHTTCCEEEEE-----ECCC-----CHHHHHHHHHHHHHHH--TCEEEEEECHHHHHTTTCBTTBCHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEcc-----CCccCCChHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHc
Confidence 4478888899999998853 4567777777888999999999998 567777665531 246788999
Q ss_pred CCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC-C---CCCcHHHHH
Q 016596 300 GVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI-K---VGTPEENVA 375 (386)
Q Consensus 300 g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i-~---~~tp~Eni~ 375 (386)
|++++=+|...+..+..+.--. +.|.=|..+. |++ ++.++++...+..-+.+ -|+. | .+-+.+-+.
T Consensus 92 Gi~glRLD~Gf~~~eia~ls~n-lkIeLNASti----~~~----~l~~l~~~~~n~~~l~a-~HNFYPr~~TGLs~~~f~ 161 (372)
T 2p0o_A 92 GVTGLRMDYGITIEQMAHASHK-IDIGLNASTI----TLE----EVAELKAHQADFSRLEA-WHNYYPRPETGIGTTFFN 161 (372)
T ss_dssp TCCEEEECSSCCHHHHHHHHTT-SEEEEETTTC----CHH----HHHHHHHTTCCGGGEEE-ECCCCCSTTCSBCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHhcC-CEEEEECccC----CHH----HHHHHHHcCCChHHeEE-eeccCCCCCCCCCHHHHH
Confidence 9999999999999888886543 4433333221 233 34445555443333443 2554 2 355888888
Q ss_pred HHHHHHHhhc
Q 016596 376 HFFEVAKAIR 385 (386)
Q Consensus 376 a~~~a~~~yg 385 (386)
..-+..|+||
T Consensus 162 ~~n~~~k~~G 171 (372)
T 2p0o_A 162 EKNRWLKELG 171 (372)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 8888888887
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=16 Score=33.83 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=37.9
Q ss_pred HHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcC
Q 016596 235 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLD 307 (386)
Q Consensus 235 ~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d 307 (386)
+.+.|+..|.+...-...++ .+++.++++.+++. +..+.+ +.|... .++.+.+.|++.+.+.
T Consensus 96 ~~~~g~~~i~~~gGe~p~~~--------~~~~~~li~~i~~~--~~~i~~-s~g~l~~e~l~~L~~ag~~~v~i~ 159 (348)
T 3iix_A 96 AVQFGAKTIVLQSGEDPYXM--------PDVISDIVKEIKKM--GVAVTL-SLGEWPREYYEKWKEAGADRYLLR 159 (348)
T ss_dssp HHHTTCSEEEEEESCCGGGT--------THHHHHHHHHHHTT--SCEEEE-ECCCCCHHHHHHHHHHTCCEEECC
T ss_pred HHHCCCCEEEEEeCCCCCcc--------HHHHHHHHHHHHhc--CceEEE-ecCCCCHHHHHHHHHhCCCEEeee
Confidence 44578888877532211222 25677788888875 333332 234433 5789999999987653
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=87.36 E-value=13 Score=37.46 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCH-HHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhc--CC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSP-VDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALT--GV 301 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp-~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~--g~ 301 (386)
.+..++.++.+++.|||.|-+. +.+..+++ +.++++ .|.. ++.. ++|+.+-+. +...++.-.+. |.
T Consensus 339 ~~~a~~~A~~~v~~GAdiIDIg-pg~~~v~~~ee~~rv-v~~i-------~~~~-~vpisIDT~-~~~v~eaal~~~~G~ 407 (566)
T 1q7z_A 339 EEIVIKEAKTQVEKGAEVLDVN-FGIESQIDVRYVEKI-VQTL-------PYVS-NVPLSLDIQ-NVDLTERALRAYPGR 407 (566)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEE-CSSGGGSCHHHHHHH-HHHH-------HHHT-CSCEEEECC-CHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHH-HHHH-------HhhC-CceEEEeCC-CHHHHHHHHHhcCCC
Confidence 3566677888999999999987 33333444 333332 3333 3322 567666543 23346666666 99
Q ss_pred CEEE-cCCC----CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC--C--CCeEEecCC
Q 016596 302 DVVS-LDWT----VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--R--WKHILNLGH 363 (386)
Q Consensus 302 d~l~-~d~~----~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~--~--~g~Ils~gc 363 (386)
++++ +... ..+..+.+++|-.+++|-. +.. .-.|.+++.+..++.++.+. | ...|+-||-
T Consensus 408 ~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~-~~~-~p~t~~~~~~~l~~~~~~a~~~Gi~~~IilDPg~ 476 (566)
T 1q7z_A 408 SLFNSAKVDEEELEMKINLLKKYGGTLIVLLM-GKD-VPKSFEERKEYFEKALKILERHDFSDRVIFDPGV 476 (566)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHCCEEEEESC-SSS-CCCSHHHHHHHHHHHHHHHHHTTCGGGEEEECCC
T ss_pred CEEEECCcchhhHHHHHHHHHHhCCeEEEEeC-CCC-CcCCHHHHHHHHHHHHHHHHHCCCCCcEEEeCCC
Confidence 9884 3322 2345566778876666653 221 33457778888888877764 2 357999987
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=87.15 E-value=20 Score=33.67 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=42.7
Q ss_pred HHHhCCCEEEEecCC--cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEEEcCCCC
Q 016596 235 QADNGAQAVQIFDSW--ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVVSLDWTV 310 (386)
Q Consensus 235 ~~e~G~d~i~i~d~~--~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l~~d~~~ 310 (386)
+.+.|+..|++...+ ...+ -.+++.++++.+++. +..+.+ ..|... .++.|.+.|++.++++-..
T Consensus 111 ~~~~g~~~i~~~gg~~~p~~~--------~~~~l~~ll~~ik~~--g~~i~~-t~G~l~~e~l~~L~~aGvd~v~i~les 179 (369)
T 1r30_A 111 AKAAGSTRFCMGAAWKNPHER--------DMPYLEQMVQGVKAM--GLEACM-TLGTLSESQAQRLANAGLDYYNHNLDT 179 (369)
T ss_dssp HHHTTCSEEEEEECCSSCCTT--------THHHHHHHHHHHHHT--TSEEEE-ECSSCCHHHHHHHHHHCCCEEECCCBS
T ss_pred HHHcCCcEEEEEeCCCCCCcC--------CHHHHHHHHHHHHHc--CCeEEE-ecCCCCHHHHHHHHHCCCCEEeecCcC
Confidence 345688888876543 2222 246677788888876 444433 566654 4889999999998765333
Q ss_pred C
Q 016596 311 D 311 (386)
Q Consensus 311 d 311 (386)
+
T Consensus 180 ~ 180 (369)
T 1r30_A 180 S 180 (369)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=86.89 E-value=8.7 Score=36.51 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchH----HHHHhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLL----ERLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l----~~l~e~g 300 (386)
++-.++.++.+.++|++.|=+.-+. .||+.|+.+ +++.+.+ ++..+..+.-++..-+ +.+.+.|
T Consensus 33 ~~~Kl~ia~~L~~~Gv~~IE~g~p~---~~~~d~e~v-----~~i~~~~----~~~~i~~l~r~~~~di~~a~~al~~ag 100 (370)
T 3rmj_A 33 KEEKIRVARQLEKLGVDIIEAGFAA---ASPGDFEAV-----NAIAKTI----TKSTVCSLSRAIERDIRQAGEAVAPAP 100 (370)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEGG---GCHHHHHHH-----HHHHTTC----SSSEEEEEEESSHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHH-----HHHHHhC----CCCeEEEEecCCHHHHHHHHHHHhhCC
Confidence 4555677778888999987654332 467666542 3443332 2344445543443323 3444588
Q ss_pred CCEEEcCCC-----------CCHHHHHHH----------hCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeE
Q 016596 301 VDVVSLDWT-----------VDMAEGRRR----------LGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHI 358 (386)
Q Consensus 301 ~d~l~~d~~-----------~dl~e~~~~----------~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~I 358 (386)
++.+++... .+.++..+. .|..+. .+ +..- ..+++.+.+-++.+.+.+.. +
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~-~~---~ed~~r~~~~~~~~~~~~~~~~Ga~---~ 173 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVE-FS---CEDALRSEIDFLAEICGAVIEAGAT---T 173 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEE-EE---EETGGGSCHHHHHHHHHHHHHHTCC---E
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE-Ee---cCCCCccCHHHHHHHHHHHHHcCCC---E
Confidence 887754211 233322222 333322 22 1122 57788888888877776433 4
Q ss_pred EecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 359 LNLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 359 ls~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
++....+- -..|+.+..+++++++
T Consensus 174 i~l~DT~G-~~~P~~~~~lv~~l~~ 197 (370)
T 3rmj_A 174 INIPDTVG-YSIPYKTEEFFRELIA 197 (370)
T ss_dssp EEEECSSS-CCCHHHHHHHHHHHHH
T ss_pred EEecCccC-CcCHHHHHHHHHHHHH
Confidence 44433333 3345557777777764
|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=86.88 E-value=18 Score=32.86 Aligned_cols=156 Identities=14% Similarity=0.058 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCc--EEEEecC------C-------
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLS--LILYASG------S------- 289 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~--~~~H~cG------~------- 289 (386)
.+.+.+.++...+.|++.|.+.. ....-+++.|+ .+...++++.+.++++ |+. +.+|.+. +
T Consensus 107 ~~~~~~~i~~A~~lG~~~v~~~~-~~~~~~~~~~~-~~~~~l~~l~~~a~~~--Gv~~~l~~En~~~e~~~~~t~~~~~~ 182 (303)
T 3l23_A 107 MEYWKATAADHAKLGCKYLIQPM-MPTITTHDEAK-LVCDIFNQASDVIKAE--GIATGFGYHNHNMEFNRVATKEQQEK 182 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECS-CCCCCSHHHHH-HHHHHHHHHHHHHHHT--TCTTCEEEECCSGGGSEECCTTTC--
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-CCCCCCHHHHH-HHHHHHHHHHHHHHHC--CCcceEEEccCcceeecccccccccc
Confidence 34445556667778999987742 11224666664 5578999999999987 688 8898775 2
Q ss_pred ------------cc-hHHHHH-hcCCC--EEEcC------CCCCHHHHHHHhCCCeeEEecCCcCccCC-CHHHHHHHHH
Q 016596 290 ------------GG-LLERLA-LTGVD--VVSLD------WTVDMAEGRRRLGPDVAVQGNVDPGALFG-SKDFITNRIN 346 (386)
Q Consensus 290 ------------~~-~l~~l~-e~g~d--~l~~d------~~~dl~e~~~~~g~~~~l~G~vd~~~l~g-t~eev~~~v~ 346 (386)
.. .++.+. +.+.+ .+.+| ...|+.+..+++++++..+=-=| ....| +-+-=-+.+.
T Consensus 183 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~D~~h~~~~g~d~~~~i~~~~~ri~~vH~kD-~~~~G~~G~id~~~i~ 261 (303)
T 3l23_A 183 VKGNPFAAFMKVGDQIYDLMLKDTDPSKVYFEMDVYWTVMGQNDPVEYMQKHPDRIKVLHIKD-RAVFGQSGMMNFEMIF 261 (303)
T ss_dssp --------CCCCSEEHHHHHHHHSCTTTEEEEEEHHHHHHTTCCHHHHHHHCTTTEEEEEECC-SSSTTSSSCCCHHHHH
T ss_pred cccccccccccCchHHHHHHHHhCCchhEEEEEehHHHHHcCCCHHHHHHHhcCcEEEEEecC-CcCCCCCCccCHHHHH
Confidence 22 366664 45544 23444 23589999999998755422112 11134 2111134445
Q ss_pred HHHHHcCCCCeEEecCCCCC-CCCcHHHHHHHHHHHHhhcC
Q 016596 347 DTVRKAGRWKHILNLGHGIK-VGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 347 ~~i~~~~~~g~Ils~gc~i~-~~tp~Eni~a~~~a~~~yg~ 386 (386)
+.++..+-.|+|+-.. ..| .+.|.+.++.-++..+++||
T Consensus 262 ~~L~~~gy~G~ivE~~-~~~~~~~p~~~~~~s~~~l~~~~~ 301 (303)
T 3l23_A 262 KQMYANGIKDYFVELE-QMPDGRTQFAGVKDCADYLIKAPF 301 (303)
T ss_dssp HHHHHHTCCCEEECCC-CCTTSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCEEEEEec-CCccCCCHHHHHHHHHHHHHHcCC
Confidence 5666667346765432 122 34589999999999999886
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=15 Score=33.62 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|.-.-.|+ +=+.-|++++.++. +.|++++.. |.. . .+..|.+.+
T Consensus 97 i~la~~A~~~Gadavlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p- 166 (301)
T 1xky_A 97 IDLTKKATEVGVDAVMLVAPYYNKPSQ----EGMYQHFKAIAEST-----PLPVMLYNVPGRSIVQISVDTVVRLSEIE- 166 (301)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCH----HHHHHHHHHHHHTC-----SSCEEEEECHHHHSSCCCHHHHHHHHTST-
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHHcCC-
Confidence 556666778999999887776444454 33445667777655 468888764 322 2 234455543
Q ss_pred CEEEc-CCCCCHH---HHHHHhCCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDMA---EGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl~---e~~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+. ++++..+++..+..|-|.
T Consensus 167 nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~ 200 (301)
T 1xky_A 167 NIVAIKDAGGDVLTMTEIIEKTADDFAVYSGDDG 200 (301)
T ss_dssp TEEEEEECSSCHHHHHHHHHHSCTTCEEEESSGG
T ss_pred CEEEEEcCCCCHHHHHHHHHhcCCCeEEEECcHH
Confidence 56655 3334554 444455666666666664
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=86.78 E-value=9.3 Score=34.43 Aligned_cols=114 Identities=11% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCCEEEEe--cCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 227 SMAKYVQYQADNGAQAVQIF--DSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~--d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
..+++++++.++|++.+... ++.. ||-.|+.+....++.+.+..++. |.|++-=.... ..++.+.++ ++++
T Consensus 38 ~a~~~a~~l~~~Ga~~vk~~~fkprt---s~~~~~g~~~egl~~l~~~~~~~--Gl~~~te~~d~-~~~~~l~~~-vd~~ 110 (262)
T 1zco_A 38 QIMKVAEFLAEVGIKVLRGGAFKPRT---SPYSFQGYGEKALRWMREAADEY--GLVTVTEVMDT-RHVELVAKY-SDIL 110 (262)
T ss_dssp HHHHHHHHHHHTTCCEEECBSSCCCS---STTSCCCCTHHHHHHHHHHHHHH--TCEEEEECCCG-GGHHHHHHH-CSEE
T ss_pred HHHHHHHHHHHcCCCEEEEEecccCC---CcccccCccHHHHHHHHHHHHHc--CCcEEEeeCCH-HhHHHHHhh-CCEE
Confidence 34456666777999987643 2221 23233333355667777777776 56754333322 236788888 8988
Q ss_pred EcCC--CCCHHHHHHH--hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHc
Q 016596 305 SLDW--TVDMAEGRRR--LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKA 352 (386)
Q Consensus 305 ~~d~--~~dl~e~~~~--~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~ 352 (386)
-+.. ..+..-+++. +|.-+.|-- .+.+|++|+.+.+..+...+
T Consensus 111 kIga~~~~n~~ll~~~a~~~kPV~lk~-----G~~~t~~e~~~Av~~i~~~G 157 (262)
T 1zco_A 111 QIGARNSQNFELLKEVGKVENPVLLKR-----GMGNTIQELLYSAEYIMAQG 157 (262)
T ss_dssp EECGGGTTCHHHHHHHTTSSSCEEEEC-----CTTCCHHHHHHHHHHHHTTT
T ss_pred EECcccccCHHHHHHHHhcCCcEEEec-----CCCCCHHHHHHHHHHHHHCC
Confidence 7754 3454444443 222121111 12468999999987665543
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=86.54 E-value=19 Score=32.83 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 016596 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQ 244 (386)
Q Consensus 165 ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~ 244 (386)
+.++...+..++++||+..+++.- ++-.++.++...++|+|++.
T Consensus 61 ~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadavl 104 (293)
T 1f6k_A 61 EIFRIAKDEAKDQIALIAQVGSVN------------------------------------LKEAVELGKYATELGYDCLS 104 (293)
T ss_dssp HHHHHHHHHHTTSSEEEEECCCSC------------------------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhCCCCeEEEecCCCC------------------------------------HHHHHHHHHHHHhcCCCEEE
Confidence 445555666677788887765431 12233556667788999998
Q ss_pred EecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHHHH
Q 016596 245 IFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAEGR 316 (386)
Q Consensus 245 i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e~~ 316 (386)
+.-|...-.|. +=+.-|++.+.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+....
T Consensus 105 v~~P~y~~~~~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiK~s~gd~~~~~ 174 (293)
T 1f6k_A 105 AVTPFYYKFSF----PEIKHYYDTIIAET-----GSNMIVYSIPFLTGVNMGIEQFGELYKNP-KVLGVKFTAGDFYLLE 174 (293)
T ss_dssp EECCCSSCCCH----HHHHHHHHHHHHHH-----CCCEEEEECHHHHCCCCCHHHHHHHHTST-TEEEEEECSCCHHHHH
T ss_pred ECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEECccccCcCCCHHHHHHHhcCC-CEEEEEECCCCHHHHH
Confidence 87776443453 44556788888876 357777763 432 2 244555543 56655 3345654433
Q ss_pred HHh--CCCeeEEecCCc
Q 016596 317 RRL--GPDVAVQGNVDP 331 (386)
Q Consensus 317 ~~~--g~~~~l~G~vd~ 331 (386)
+.. +++..+..|-|.
T Consensus 175 ~~~~~~~~f~v~~G~d~ 191 (293)
T 1f6k_A 175 RLKKAYPNHLIWAGFDE 191 (293)
T ss_dssp HHHHHCTTSEEEECCGG
T ss_pred HHHHhCCCeEEEECcHH
Confidence 322 334555555554
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=4.3 Score=37.33 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
...+.++.+.++|++.|.++|..+ .++|+.+.+++.-. ++..++.++-+|++-+... + ..+ .+.|++
T Consensus 157 ~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~lv~~l--------~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~ 227 (298)
T 2cw6_A 157 KVAEVTKKFYSMGCYEISLGDTIG-VGTPGIMKDMLSAV--------MQEVPLAALAVHCHDTYGQALANTLMALQMGVS 227 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTS-CCCHHHHHHHHHHH--------HHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC-CcCHHHHHHHHHHH--------HHhCCCCeEEEEECCCCchHHHHHHHHHHhCCC
Confidence 334445567788999999998775 57898888765432 2222245789999887652 2 223 467998
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
.++.
T Consensus 228 ~vd~ 231 (298)
T 2cw6_A 228 VVDS 231 (298)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8753
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=11 Score=34.20 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEec--CCcc--hHHHHHhcCCC----EE-EcCCCCCHHHHHHHh--CCCeeEEecCCc
Q 016596 263 LPYLKQIVDTVKQTHPDLSLILYAS--GSGG--LLERLALTGVD----VV-SLDWTVDMAEGRRRL--GPDVAVQGNVDP 331 (386)
Q Consensus 263 ~P~~k~l~~~i~~~~~~~~~~~H~c--G~~~--~l~~l~e~g~d----~l-~~d~~~dl~e~~~~~--g~~~~l~G~vd~ 331 (386)
...+++.++.+++. +.|+++|+. |... .++.+.+.|+. ++ +.....+.+.+++.. |-.+.+-| .
T Consensus 150 ~~~~~~~~~lA~~~--~~pv~iH~~~~~~~~~~~~~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~-~-- 224 (314)
T 2vc7_A 150 EKVIRAAAIANKET--KVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDR-Y-- 224 (314)
T ss_dssp HHHHHHHHHHHHHH--CCCEEEECCTTTTHHHHHHHHHHHTTCCGGGEEETTGGGCCCHHHHHHHHHTTCEEEECC-T--
T ss_pred HHHHHHHHHHHHHH--CCEEEEeCCCcccChHHHHHHHHHcCCCcccEEEECCCCCCCHHHHHHHHHcCCEEEEeC-C--
Confidence 34556667777776 689999984 2432 46777777763 22 444335677777654 43333332 1
Q ss_pred Ccc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 332 GAL-FGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 332 ~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
... +.+.++..+.++++++.+....+++++++.
T Consensus 225 ~~~~~~~~~~~~~~i~~~~~~g~~drilleTD~~ 258 (314)
T 2vc7_A 225 GLDLFLPVDKRNETTLRLIKDGYSDKIMISHDYC 258 (314)
T ss_dssp TCTTTSCHHHHHHHHHHHHHTTCTTTEEECCCCB
T ss_pred CcccCCCHHHHHHHHHHHHHcCCCCeEEEcCCcc
Confidence 122 456678888888888875456899999984
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=86.24 E-value=7.6 Score=35.78 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 36 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~----~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~Gad 108 (303)
T 2wkj_A 36 RLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLE----IVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRYGFD 108 (303)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhCCCC
Confidence 4445677899999998877764 699988777554 33444443 4799999877653 23 444568999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 109 avlv 112 (303)
T 2wkj_A 109 AVSA 112 (303)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7743
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=86.23 E-value=13 Score=34.31 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc----hHHHHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSW----ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG----LLERLA 297 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~----~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~----~l~~l~ 297 (386)
+...++++.+++.|||.|-+.-.+ +.-.|++.=.+ +++.+.+.. ++|+.+--+||.. .++.-+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~--------vV~~v~~~~-~vplsI~DT~~~~~~~~V~eaal 144 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAE--------VCKAVADAI-DVPLMIIGCGVEEKDAEIFPVIG 144 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHH--------HHHHHHHHC-SSCEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHH--------HHHHHHHhC-CceEEEECCCCCCCCHHHHHHHH
Confidence 455677778889999999987522 23588876555 344444432 5787665666643 356667
Q ss_pred hcCCC---EEE-cCCC--CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC--CCCeEEecCCCC
Q 016596 298 LTGVD---VVS-LDWT--VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG--RWKHILNLGHGI 365 (386)
Q Consensus 298 e~g~d---~l~-~d~~--~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~--~~g~Ils~gc~i 365 (386)
+.|.+ +++ +... ..+..+...+|-.++++..- +.+..++.+.++. ..| ....|+-||.+.
T Consensus 145 ~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~-------dv~~l~~~~~~a~-~~Gi~~e~IilDPg~g~ 212 (310)
T 2h9a_B 145 EALSGRNCLLSSATKDNYKPIVATCMVHGHSVVASAPL-------DINLSKQLNIMIM-EMNLAPNRIIMDPLIGA 212 (310)
T ss_dssp HHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEECSS-------CHHHHHHHHHHHH-TTTCCGGGEEEECCCCC
T ss_pred HhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEEChh-------HHHHHHHHHHHHH-HCCCChhhEEEeCCCcc
Confidence 78887 664 4332 24556667788767776532 2344444444443 444 367999999884
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.95 E-value=2.8 Score=38.48 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|.+..++.+. .+++.+.. .+|++.++.++.+ -+ ....+.|
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~G 95 (292)
T 2vc6_A 23 LHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVE----ITIKTANG---RVPVIAGAGSNSTAEAIAFVRHAQNAG 95 (292)
T ss_dssp HHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHHcC
Confidence 345556678899999998777664 699988777543 33444443 4789999887654 23 4446789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 96 adavlv 101 (292)
T 2vc6_A 96 ADGVLI 101 (292)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 997743
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=85.76 E-value=3 Score=38.68 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCE
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDV 303 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~ 303 (386)
..+.++.+.++|++.|.++|..+ .+.|..+.+++ +.+++..++.++-+|++-+... + ..+ .+.|++.
T Consensus 159 ~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~ 229 (307)
T 1ydo_A 159 VIRLSEALFEFGISELSLGDTIG-AANPAQVETVL--------EALLARFPANQIALHFHDTRGTALANMVTALQMGITV 229 (307)
T ss_dssp HHHHHHHHHHHTCSCEEEECSSC-CCCHHHHHHHH--------HHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhcCCCEEEEcCCCC-CcCHHHHHHHH--------HHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCE
Confidence 33444556778999999998766 57888776654 3444433346889999877652 2 333 4679998
Q ss_pred EE
Q 016596 304 VS 305 (386)
Q Consensus 304 l~ 305 (386)
++
T Consensus 230 vd 231 (307)
T 1ydo_A 230 FD 231 (307)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.70 E-value=15 Score=33.98 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++++||++.+++.- ++-.++.++...++|+|++
T Consensus 80 ~~v~~~~v~~~~grvpViaGvg~~~------------------------------------t~~ai~la~~A~~~Gadav 123 (315)
T 3na8_A 80 DEVVDFTLKTVAHRVPTIVSVSDLT------------------------------------TAKTVRRAQFAESLGAEAV 123 (315)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3445556666677788887765441 1223455666778899999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHH-HhcCCCEEEc-CCCCCHH-
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERL-ALTGVDVVSL-DWTVDMA- 313 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l-~e~g~d~l~~-d~~~dl~- 313 (386)
.+.-|.-.-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+ .+.+ +++.+ +...|+.
T Consensus 124 lv~~P~y~~~s~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~L~a~~p-nIvgiKdssgd~~~ 193 (315)
T 3na8_A 124 MVLPISYWKLNEA----EVFQHYRAVGEAI-----GVPVMLYNNPGTSGIDMSVELILRIVREVD-NVTMVKESTGDIQR 193 (315)
T ss_dssp EECCCCSSCCCHH----HHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHST-TEEEEEECSSCHHH
T ss_pred EECCCCCCCCCHH----HHHHHHHHHHHhC-----CCcEEEEeCcchhCcCCCHHHHHHHHhcCC-CEEEEECCCCCHHH
Confidence 8876664444543 3455777777776 367777764 322 2 24445 5554 56655 3334544
Q ss_pred --HHHHHhCCCeeEEecCCc
Q 016596 314 --EGRRRLGPDVAVQGNVDP 331 (386)
Q Consensus 314 --e~~~~~g~~~~l~G~vd~ 331 (386)
++.+..+++..+..|-|.
T Consensus 194 ~~~~~~~~~~~f~v~~G~D~ 213 (315)
T 3na8_A 194 MHKLRLLGEGRVPFYNGCNP 213 (315)
T ss_dssp HHHHHHHTTTCSCEEECCGG
T ss_pred HHHHHHHcCCCEEEEeCchH
Confidence 344445555555555554
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=5.9 Score=38.42 Aligned_cols=139 Identities=9% Similarity=0.039 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVS 305 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~ 305 (386)
+--++.++.+.++|++.|=++-|. .||++|+- ++.+.+.+....+..++-.+..-++...+.|++.++
T Consensus 61 eeKl~Ia~~L~~~Gv~~IEvG~P~---asp~d~~~---------~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~~~V~ 128 (423)
T 3ivs_A 61 EKKIQIAKALDNFGVDYIELTSPV---ASEQSRQD---------CEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVD 128 (423)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCTT---SCHHHHHH---------HHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeecc---cCHHHHHH---------HHHHHhcCCCCEEEEeeccChhhHHHHHHcCCCEEE
Confidence 344566777889999998765433 56776643 223333321223333433333336777889998776
Q ss_pred cCC-----------CCCH----H------HHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 306 LDW-----------TVDM----A------EGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 306 ~d~-----------~~dl----~------e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
+-. ..+. + +..+..|.+ +.+... .....+++.+.+-++.+.+.+.. . ++....
T Consensus 129 i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~--V~~~~e-da~r~d~~~~~~v~~~~~~~Ga~-~--i~l~DT 202 (423)
T 3ivs_A 129 VVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIE--VRFSSE-DSFRSDLVDLLSLYKAVDKIGVN-R--VGIADT 202 (423)
T ss_dssp EEEEC-------------CHHHHHHHHHHHHHHTTTCE--EEEEEE-SGGGSCHHHHHHHHHHHHHHCCS-E--EEEEET
T ss_pred EEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCE--EEEEEc-cCcCCCHHHHHHHHHHHHHhCCC-c--cccCCc
Confidence 521 1122 1 112223433 222221 12367888888888777765423 2 333333
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 016596 365 IKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~ 383 (386)
+- -..|+.+..+++++++
T Consensus 203 vG-~~~P~~v~~lv~~l~~ 220 (423)
T 3ivs_A 203 VG-CATPRQVYDLIRTLRG 220 (423)
T ss_dssp TS-CCCHHHHHHHHHHHHH
T ss_pred cC-cCCHHHHHHHHHHHHh
Confidence 32 3345568888887765
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=10 Score=36.24 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEE
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVV 304 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l 304 (386)
++-.+++++.+.++|++.|=+.-+ -.+|++|+ .++.+.+.+....+..+.-++..-++...+.|++.+
T Consensus 24 ~~~k~~ia~~L~~~Gv~~IE~g~p---~~~~~~~~---------~~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~v 91 (382)
T 2ztj_A 24 TQDKVEIAKALDEFGIEYIEVTTP---VASPQSRK---------DAEVLASLGLKAKVVTHIQCRLDAAKVAVETGVQGI 91 (382)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCT---TSCHHHHH---------HHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCcCEEEEcCC---cCCHHHHH---------HHHHHHhcCCCcEEEEEcccChhhHHHHHHcCCCEE
Confidence 455667778888899998766432 35676653 234444433233444443333334677788999987
Q ss_pred EcCCC----------CCHH----------HHHHHhCCCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCC
Q 016596 305 SLDWT----------VDMA----------EGRRRLGPDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGH 363 (386)
Q Consensus 305 ~~d~~----------~dl~----------e~~~~~g~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc 363 (386)
++-.. .+.+ +..+..|+.+-+. ++...- .-+++.+.+.++++.+. .. .+.|. .
T Consensus 92 ~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~--~~~ed~~~~~~~~~~~~~~~~~~~-a~-~i~l~--D 165 (382)
T 2ztj_A 92 DLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVR--FSAEDTFRSEEQDLLAVYEAVAPY-VD-RVGLA--D 165 (382)
T ss_dssp EEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEE--EEETTTTTSCHHHHHHHHHHHGGG-CS-EEEEE--E
T ss_pred EEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEE--EEEEeCCCCCHHHHHHHHHHHHHh-cC-EEEec--C
Confidence 65211 1221 1222345222332 223332 67788888888887776 43 33332 2
Q ss_pred CCCCCCcHHHHHHHHHHHHh
Q 016596 364 GIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 364 ~i~~~tp~Eni~a~~~a~~~ 383 (386)
.+ .-..|+.+..+++++++
T Consensus 166 T~-G~~~P~~~~~lv~~l~~ 184 (382)
T 2ztj_A 166 TV-GVATPRQVYALVREVRR 184 (382)
T ss_dssp TT-SCCCHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHH
Confidence 22 22346667777777765
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.57 E-value=5.5 Score=37.27 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|+++|++..+.+. .+|.+..++++. .+++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 59 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~----~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~Gad 131 (332)
T 2r8w_A 59 ALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIE----AAATILRG---RRTLMAGIGALRTDEAVALAKDAEAAGAD 131 (332)
T ss_dssp HHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEEECCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 3444567789999998887764 699988877654 33444443 4799999887654 23 444568999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 132 avlv 135 (332)
T 2r8w_A 132 ALLL 135 (332)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=85.57 E-value=12 Score=34.34 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++++||+..+++.- ++-.++.++...++|+|++
T Consensus 71 ~~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadav 114 (304)
T 3l21_A 71 IELLRAVLEAVGDRARVIAGAGTYD------------------------------------TAHSIRLAKACAAEGAHGL 114 (304)
T ss_dssp HHHHHHHHHHHTTTSEEEEECCCSC------------------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCC------------------------------------HHHHHHHHHHHHHcCCCEE
Confidence 3445566677777899988775441 1223455666778899999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHHH
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAEG 315 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e~ 315 (386)
.+.-|.-.-.|++ =+.-|++++.++. +.|++++.. |.. . .+..+.+.+ +++.+ +...|+...
T Consensus 115 lv~~P~y~~~s~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdssgd~~~~ 184 (304)
T 3l21_A 115 LVVTPYYSKPPQR----GLQAHFTAVADAT-----ELPMLLYDIPGRSAVPIEPDTIRALASHP-NIVGVXDAKADLHSG 184 (304)
T ss_dssp EEECCCSSCCCHH----HHHHHHHHHHTSC-----SSCEEEEECHHHHSSCCCHHHHHHHHTST-TEEEEEECSCCHHHH
T ss_pred EECCCCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEECCCCCHHHH
Confidence 9877764444543 3444677777766 468888764 432 2 245555554 56665 344566655
Q ss_pred HHHh-CCCeeEEecCC
Q 016596 316 RRRL-GPDVAVQGNVD 330 (386)
Q Consensus 316 ~~~~-g~~~~l~G~vd 330 (386)
.+.. +++..+..|-|
T Consensus 185 ~~~~~~~~f~v~~G~d 200 (304)
T 3l21_A 185 AQIMADTGLAYYSGDD 200 (304)
T ss_dssp HHHHHHHCCEEEESSG
T ss_pred HHHhcCCCeEEEeCch
Confidence 5432 22344444444
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=4.7 Score=37.00 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=48.8
Q ss_pred HHHHHHHHH-hCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 229 AKYVQYQAD-NGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 229 ~~~~~~~~e-~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
.++++.+++ .|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|
T Consensus 27 ~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~G 99 (293)
T 1f6k_A 27 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR----IAKDEAKD---QIALIAQVGSVNLKEAVELGKYATELG 99 (293)
T ss_dssp HHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHhcC
Confidence 344556778 99999998877764 699988777653 34444543 4799999887654 23 4445689
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 100 adavlv 105 (293)
T 1f6k_A 100 YDCLSA 105 (293)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 997743
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=85.44 E-value=18 Score=31.70 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~ 306 (386)
+.++.+.++|++.+.+.|..+.+- -.+...+++..+++.. +.|+++| |... .++.+.+.|+|.+.+
T Consensus 34 ~~a~~~~~~Gad~i~v~d~~~~~~--------~~~~~~~~i~~i~~~~-~ipvi~~--ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 34 ELGKFYSEIGIDELVFLDITASVE--------KRKTMLELVEKVAEQI-DIPFTVG--GGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSS--------HHHHHHHHHHHHHTTC-CSCEEEE--SSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEECCchhhc--------CCcccHHHHHHHHHhC-CCCEEEe--CCCCCHHHHHHHHHcCCCEEEE
Confidence 344667789999999887554332 1234445556666543 5787665 3332 478888899999887
Q ss_pred CCC----C-CHHHHHHHhCCC
Q 016596 307 DWT----V-DMAEGRRRLGPD 322 (386)
Q Consensus 307 d~~----~-dl~e~~~~~g~~ 322 (386)
... . .+.++.+.+|.+
T Consensus 103 g~~~l~~p~~~~~~~~~~g~~ 123 (253)
T 1thf_D 103 NTAAVENPSLITQIAQTFGSQ 123 (253)
T ss_dssp SHHHHHCTHHHHHHHHHHCGG
T ss_pred ChHHHhChHHHHHHHHHcCCC
Confidence 542 2 267788888753
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=85.13 E-value=9.4 Score=34.86 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|++++++..+.+. .+|.+..++.+. ..++.+.. .+|++.|+.++.+ -+ ....+.|+
T Consensus 25 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~Ga 97 (291)
T 3tak_A 25 EKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIK----EIIRVANK---RIPIIAGTGANSTREAIELTKAAKDLGA 97 (291)
T ss_dssp HHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHH----HHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 34455677899999998877764 689888766543 34444443 4799999887654 23 45567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 98 davlv 102 (291)
T 3tak_A 98 DAALL 102 (291)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 97743
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.12 E-value=9.5 Score=34.98 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.|+.++.+ -+ ....+.|+
T Consensus 31 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Ga 103 (297)
T 3flu_A 31 RDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIE----AVVKHVAK---RVPVIAGTGANNTVEAIALSQAAEKAGA 103 (297)
T ss_dssp HHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHcCC
Confidence 34445577899999998877764 799888777654 34445543 4799999877654 23 45567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 104 davlv 108 (297)
T 3flu_A 104 DYTLS 108 (297)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98743
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=85.05 E-value=23 Score=32.43 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCC-ceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 016596 164 GKALTILREEVNN-EAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQA 242 (386)
Q Consensus 164 ~ea~~~l~~~~g~-~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~ 242 (386)
.+.++...+..++ ++||+..+++.- ++-.++.++...++|+|+
T Consensus 63 ~~v~~~~~~~~~g~rvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gada 106 (301)
T 3m5v_A 63 RTCIEIAVETCKGTKVKVLAGAGSNA------------------------------------THEAVGLAKFAKEHGADG 106 (301)
T ss_dssp HHHHHHHHHHHTTSSCEEEEECCCSS------------------------------------HHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhCCCCCeEEEeCCCCC------------------------------------HHHHHHHHHHHHHcCCCE
Confidence 3455566677777 799988776531 222345666677899999
Q ss_pred EEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHH
Q 016596 243 VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAE 314 (386)
Q Consensus 243 i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e 314 (386)
+.+.-|.-.-.|+ +=+.-|++++.++. +.|++++.. |.. . .+..+.+.-.+++.+ +...|+..
T Consensus 107 vlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKdssgd~~~ 177 (301)
T 3m5v_A 107 ILSVAPYYNKPTQ----QGLYEHYKAIAQSV-----DIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDK 177 (301)
T ss_dssp EEEECCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSSCHHH
T ss_pred EEEcCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 9987776544454 33455788888877 468888764 332 2 245555652366666 44456655
Q ss_pred HHH---HhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHH
Q 016596 315 GRR---RLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382 (386)
Q Consensus 315 ~~~---~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~ 382 (386)
..+ .. ++..+..|-|... ...+. .|+.|.|-+.++- -|+-+.+|+++++
T Consensus 178 ~~~~~~~~-~~f~v~~G~d~~~------------~~~l~-~G~~G~is~~~n~-----~P~~~~~l~~a~~ 229 (301)
T 3m5v_A 178 CVDLLAHE-PRMMLISGEDAIN------------YPILS-NGGKGVISVTSNL-----LPDMISALTHFAL 229 (301)
T ss_dssp HHHHHHHC-TTSEEEECCGGGH------------HHHHH-TTCCEEEESGGGT-----CHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCeEEEEccHHHH------------HHHHH-cCCCEEEehHHHh-----hHHHHHHHHHHHH
Confidence 444 34 3444444444321 11222 2445677655543 3556666666654
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=84.98 E-value=5.7 Score=37.83 Aligned_cols=85 Identities=20% Similarity=0.177 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCC---CcEEEEecCCcch-H-HHH--Hh
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPD---LSLILYASGSGGL-L-ERL--AL 298 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~---~~~~~H~cG~~~~-l-~~l--~e 298 (386)
++..+.++++.++|++.|.++|+.+ ...|..+.+++ +.+++..++ .++-+|++.+... + ..+ .+
T Consensus 157 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~lv--------~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~ 227 (370)
T 3rmj_A 157 DFLAEICGAVIEAGATTINIPDTVG-YSIPYKTEEFF--------RELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALK 227 (370)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSS-CCCHHHHHHHH--------HHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCccC-CcCHHHHHHHH--------HHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHH
Confidence 4556666777888999999988876 57788776654 333332222 6788999988753 3 334 46
Q ss_pred cCCCEEEc-----CC---CCCHHHHHHHh
Q 016596 299 TGVDVVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 299 ~g~d~l~~-----d~---~~dl~e~~~~~ 319 (386)
.|++.++. .+ ..+++++.-.+
T Consensus 228 aGa~~vd~tv~GlGeraGN~~lE~vv~~L 256 (370)
T 3rmj_A 228 GGARQVECTVNGLGERAGNASVEEIVMAL 256 (370)
T ss_dssp TTCCEEEEBGGGCSSTTCBCBHHHHHHHH
T ss_pred hCCCEEEEeccccCcccccccHHHHHHHH
Confidence 79998853 22 25676665443
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.95 E-value=4.7 Score=36.91 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-H--HHHhcCCCEEEc
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-E--RLALTGVDVVSL 306 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~--~l~e~g~d~l~~ 306 (386)
+++.+.+.|+|.|.++|+.+ .++|+.+.++ ++.+++..+++++.+|.+-+... . . .-.+.|++.++.
T Consensus 160 ~~~~~~~~G~d~i~l~Dt~G-~~~P~~~~~l--------v~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~ 230 (295)
T 1ydn_A 160 VTEQLFSLGCHEVSLGDTIG-RGTPDTVAAM--------LDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDA 230 (295)
T ss_dssp HHHHHHHHTCSEEEEEETTS-CCCHHHHHHH--------HHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHhcCCCEEEecCCCC-CcCHHHHHHH--------HHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEe
Confidence 33445678999999998655 4788876664 34444433236789999766542 2 2 224679988764
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=84.85 E-value=1.8 Score=40.56 Aligned_cols=140 Identities=9% Similarity=0.067 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHH----HHHhcC
Q 016596 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLE----RLALTG 300 (386)
Q Consensus 225 ~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~----~l~e~g 300 (386)
++-.+++++.+.++|.+.|=+.-+ ..||+.|+. .+++.+.+. +..+....-++..-++ .+...|
T Consensus 27 ~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~~~d~e~-----v~~i~~~~~----~~~i~~l~r~~~~~i~~a~~al~~ag 94 (325)
T 3eeg_A 27 TEEKIIVAKALDELGVDVIEAGFP---VSSPGDFNS-----VVEITKAVT----RPTICALTRAKEADINIAGEALRFAK 94 (325)
T ss_dssp TTHHHHHHHHHHHHTCSEEEEECT---TSCHHHHHH-----HHHHHHHCC----SSEEEEECCSCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCCHhHHHH-----HHHHHHhCC----CCEEEEeecCCHHHHHHHHHhhcccC
Confidence 455567788888999998876432 257877653 244444432 4444444434433344 344448
Q ss_pred CCEEEcCC-CC--------------------CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEE
Q 016596 301 VDVVSLDW-TV--------------------DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHIL 359 (386)
Q Consensus 301 ~d~l~~d~-~~--------------------dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Il 359 (386)
++.+.+.. .. +.-+..+..|.++. .|.- ..-..++|.+.+.++++.+.+ -.++
T Consensus 95 ~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~-f~~~--d~~~~~~~~~~~~~~~~~~~G---~~~i 168 (325)
T 3eeg_A 95 RSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE-FFCE--DAGRADQAFLARMVEAVIEAG---ADVV 168 (325)
T ss_dssp SEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE-EEEE--TGGGSCHHHHHHHHHHHHHHT---CSEE
T ss_pred CCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE-EEcc--ccccchHHHHHHHHHHHHhcC---CCEE
Confidence 88765421 10 11122333454433 3322 112578899998888887764 3456
Q ss_pred ecCCCCCCCCcHHHHHHHHHHHHh
Q 016596 360 NLGHGIKVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 360 s~gc~i~~~tp~Eni~a~~~a~~~ 383 (386)
+....+-. ..|+.+..+++++++
T Consensus 169 ~l~DT~G~-~~P~~v~~lv~~l~~ 191 (325)
T 3eeg_A 169 NIPDTTGY-MLPWQYGERIKYLMD 191 (325)
T ss_dssp ECCBSSSC-CCHHHHHHHHHHHHH
T ss_pred EecCccCC-cCHHHHHHHHHHHHH
Confidence 66544443 455668888888775
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=4.1 Score=38.28 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
+++.+.++.+.++|++.|.++|..+ .+.|....+++ +.+++..++.++-+|++-+... + ..+ .+.|+
T Consensus 169 ~~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa 239 (337)
T 3ble_A 169 DYVKSLVEHLSKEHIERIFLPDTLG-VLSPEETFQGV--------DSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGV 239 (337)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTC-CCCHHHHHHHH--------HHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCC-CcCHHHHHHHH--------HHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCC
Confidence 3445566677889999999988865 47787777654 3333332346889999887652 2 333 46799
Q ss_pred CEEEc-----CC---CCCHHHHHHHh
Q 016596 302 DVVSL-----DW---TVDMAEGRRRL 319 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~ 319 (386)
+.++. .. ..+++++.-.+
T Consensus 240 ~~vd~tv~GlG~~aGN~~~E~lv~~L 265 (337)
T 3ble_A 240 KGLHASINGLGERAGNTPLEALVTTI 265 (337)
T ss_dssp SEEEEBGGGCSSTTCBCBHHHHHHHH
T ss_pred CEEEEecccccccccchhHHHHHHHH
Confidence 98853 22 25676665444
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=84.06 E-value=3.3 Score=38.97 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH----------HHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD----------FEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~----------f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||.. ++. =..+..++++++++.. +.|+.+-+
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslen-R~r~~~eiv~avr~~v-~~pv~vRl 216 (340)
T 3gr7_A 139 IEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPEN-RYRFLGEVIDAVREVW-DGPLFVRI 216 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHH-HHHHHHHHHHHHHHHC-CSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHH-HHHHHHHHHHHHHHhc-CCceEEEe
Confidence 444555555666677889999998864322 1444421 111 1235567777777664 56777766
Q ss_pred cCC-------c--c---hHHHHHhcCCCEEEcCCC------------CC---HHHHHHHhCCCeeEEecCC
Q 016596 287 SGS-------G--G---LLERLALTGVDVVSLDWT------------VD---MAEGRRRLGPDVAVQGNVD 330 (386)
Q Consensus 287 cG~-------~--~---~l~~l~e~g~d~l~~d~~------------~d---l~e~~~~~g~~~~l~G~vd 330 (386)
..+ . . +...+.+.|+|.+++... .+ ..++++.++-.+...|+|.
T Consensus 217 s~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~ 287 (340)
T 3gr7_A 217 SASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLIT 287 (340)
T ss_dssp ESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCC
Confidence 532 1 1 246677889999987320 12 3567777765566667763
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=83.88 E-value=4.9 Score=39.53 Aligned_cols=110 Identities=24% Similarity=0.233 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVD 302 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d 302 (386)
+.++.++++.++|++.|.+.|..+. +.|....+++ ..+++.. +.++-+|++.+... + ..+ .+.|++
T Consensus 159 ~~~~~a~~l~~~Gad~I~l~DT~G~-~~P~~v~~lv--------~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~ 228 (464)
T 2nx9_A 159 TWVDVAQQLAELGVDSIALKDMAGI-LTPYAAEELV--------STLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVD 228 (464)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTSC-CCHHHHHHHH--------HHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCC-cCHHHHHHHH--------HHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 3445555667899999999887764 6677666543 4444433 46899999887652 2 333 478999
Q ss_pred EEEc--C---C---CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH
Q 016596 303 VVSL--D---W---TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK 351 (386)
Q Consensus 303 ~l~~--d---~---~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~ 351 (386)
.+.. . + ..+++++.-.+... ++++..=...-.++.+.+.++...
T Consensus 229 ~VD~ti~g~gertGN~~lE~lv~~L~~~-----g~~tgidl~~L~~is~~v~~~~~~ 280 (464)
T 2nx9_A 229 RVDTAISSMSGTYGHPATESLVATLQGT-----GYDTGLDIAKLEQIAAYFRDVRKK 280 (464)
T ss_dssp EEEEBCGGGCSTTSCCBHHHHHHHHTTS-----TTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCCCcCHHHHHHHHHHHhc-----CCCcccCHHHHHHHHHHHHHHHhh
Confidence 8853 1 1 25677666665431 344321012223455555555554
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=83.83 E-value=11 Score=34.26 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|.+..++.+. ..++.+.. .+|++.++.++.+ -+ ....+.|
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~G 95 (289)
T 2yxg_A 23 LEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIE----KVVDVVNG---RVQVIAGAGSNCTEEAIELSVFAEDVG 95 (289)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 344555677899999998877764 699988777543 33444443 4799999887654 23 4445789
Q ss_pred CCEEEcC-C---CCCHHHHHHHh
Q 016596 301 VDVVSLD-W---TVDMAEGRRRL 319 (386)
Q Consensus 301 ~d~l~~d-~---~~dl~e~~~~~ 319 (386)
+|++.+- + ..+-+++.+.|
T Consensus 96 adavlv~~P~y~~~s~~~l~~~f 118 (289)
T 2yxg_A 96 ADAVLSITPYYNKPTQEGLRKHF 118 (289)
T ss_dssp CSEEEEECCCSSCCCHHHHHHHH
T ss_pred CCEEEECCCCCCCCCHHHHHHHH
Confidence 9977432 1 24555444433
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=83.77 E-value=14 Score=34.18 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+
T Consensus 35 ~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Ga 107 (318)
T 3qfe_A 35 ERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIA----TARKAVGP---DFPIMAGVGAHSTRQVLEHINDASVAGA 107 (318)
T ss_dssp HHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHCT---TSCEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 34455677889999998877764 799888777553 33444432 5799999877654 23 44557899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 108 davlv 112 (318)
T 3qfe_A 108 NYVLV 112 (318)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 97743
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=83.67 E-value=14 Score=32.59 Aligned_cols=138 Identities=20% Similarity=0.196 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCCEEEc
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVDVVSL 306 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d~l~~ 306 (386)
+.++.+.++|++.|.+.|..+.... .+..-+++..+++.. ++|+++ .|... .++.+.+.|+|.+.+
T Consensus 35 ~~a~~~~~~Gad~i~v~d~~~~~~~--------~~~~~~~i~~i~~~~-~iPvi~--~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 35 EAARAYDEAGADELVFLDISATHEE--------RAILLDVVARVAERV-FIPLTV--GGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp HHHHHHHHHTCSCEEEEECCSSTTC--------HHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEEcCCccccC--------ccccHHHHHHHHHhC-CCCEEE--ECCcCCHHHHHHHHHcCCCEEEE
Confidence 5566778899999998886544322 223334455555543 567544 34432 367888899999887
Q ss_pred CCC----C-CHHHHHHHhCCCeeEEecCCcC------cc--CCCH----HHHHHHHHHHHHHcCCCCeEEec-C-CCCCC
Q 016596 307 DWT----V-DMAEGRRRLGPDVAVQGNVDPG------AL--FGSK----DFITNRINDTVRKAGRWKHILNL-G-HGIKV 367 (386)
Q Consensus 307 d~~----~-dl~e~~~~~g~~~~l~G~vd~~------~l--~gt~----eev~~~v~~~i~~~~~~g~Ils~-g-c~i~~ 367 (386)
... . .+.++.+.++....+. ++|.. .. .|-. .+..+.++++.+. +-+.+++.. + .+...
T Consensus 104 g~~~l~~p~~~~~~~~~~~~~~i~~-~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~~~~~~~g~~~ 181 (252)
T 1ka9_F 104 NSAAVRRPELIRELADHFGAQAVVL-AIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVEL-GAGEILLTSMDRDGTKE 181 (252)
T ss_dssp CHHHHHCTHHHHHHHHHHCGGGEEE-EEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHH-TCCEEEEEETTTTTTCS
T ss_pred ChHHHhCcHHHHHHHHHcCCCcEEE-EEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHc-CCCEEEEecccCCCCcC
Confidence 532 2 2677888887432222 24431 11 2211 1233444444443 333555542 2 12334
Q ss_pred CCcHHHHHHHHHH
Q 016596 368 GTPEENVAHFFEV 380 (386)
Q Consensus 368 ~tp~Eni~a~~~a 380 (386)
+...+.++.+.+.
T Consensus 182 g~~~~~i~~l~~~ 194 (252)
T 1ka9_F 182 GYDLRLTRMVAEA 194 (252)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4567777766554
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=83.54 E-value=5 Score=37.10 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~----~~~~~~~g---rvpViaGvg~~st~~ai~la~~A~~~Gad 109 (306)
T 1o5k_A 37 RLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVS----RTLEIVDG---KIPVIVGAGTNSTEKTLKLVKQAEKLGAN 109 (306)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---CCeEEEcCCCccHHHHHHHHHHHHhcCCC
Confidence 4455677899999998877764 699988777554 33444443 4789999887654 23 444578999
Q ss_pred EEEcC----CCCCHHHHHHHh
Q 016596 303 VVSLD----WTVDMAEGRRRL 319 (386)
Q Consensus 303 ~l~~d----~~~dl~e~~~~~ 319 (386)
++.+- +..+-+++.+.|
T Consensus 110 avlv~~P~y~~~s~~~l~~~f 130 (306)
T 1o5k_A 110 GVLVVTPYYNKPTQEGLYQHY 130 (306)
T ss_dssp EEEEECCCSSCCCHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHH
Confidence 77442 134556655544
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=83.52 E-value=15 Score=34.36 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++.+||+..+++.- ++-.++.++...++|+|++
T Consensus 87 ~~vi~~~ve~~~grvpViaGvg~~s------------------------------------t~eai~la~~A~~~Gadav 130 (343)
T 2v9d_A 87 KAIARFAIDHVDRRVPVLIGTGGTN------------------------------------ARETIELSQHAQQAGADGI 130 (343)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCSSC------------------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCCC------------------------------------HHHHHHHHHHHHhcCCCEE
Confidence 3445555666667788888776541 2223355566777899999
Q ss_pred EEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHH-hcCCCEEEc-CCCCCHHH
Q 016596 244 QIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLA-LTGVDVVSL-DWTVDMAE 314 (386)
Q Consensus 244 ~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~-e~g~d~l~~-d~~~dl~e 314 (386)
.+.-|...-.|++ =+.-|++++.++. +.|++++.. |.. . .+..|. +.+ +++.+ +...|+..
T Consensus 131 lv~~P~Y~~~s~~----~l~~~f~~VA~a~-----~lPiilYn~P~~tg~~l~~e~~~~La~~~p-nIvgiKdssgd~~~ 200 (343)
T 2v9d_A 131 VVINPYYWKVSEA----NLIRYFEQVADSV-----TLPVMLYNFPALTGQDLTPALVKTLADSRS-NIIGIKDTIDSVAH 200 (343)
T ss_dssp EEECCSSSCCCHH----HHHHHHHHHHHTC-----SSCEEEEECHHHHSSCCCHHHHHHHHHHCT-TEEEEEECCSCHHH
T ss_pred EECCCCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEeCchhcCcCCCHHHHHHHHHhCC-CEEEEEeCCCCHHH
Confidence 8877764434543 3445667777655 468777764 432 2 244555 553 56655 33445544
Q ss_pred ---HHHHhC---CCeeEEecCCc
Q 016596 315 ---GRRRLG---PDVAVQGNVDP 331 (386)
Q Consensus 315 ---~~~~~g---~~~~l~G~vd~ 331 (386)
+.+..+ ++..+..|-|.
T Consensus 201 ~~~l~~~~~~~~~~f~v~~G~D~ 223 (343)
T 2v9d_A 201 LRSMIHTVKGAHPHFTVLCGYDD 223 (343)
T ss_dssp HHHHHHHHHHHCTTCEEEESSGG
T ss_pred HHHHHHhcCCCCCCEEEEECcHH
Confidence 344444 45666555553
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=83.42 E-value=8.6 Score=35.42 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.|+.++.+ -+ ....+.|+|
T Consensus 40 ~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Gad 112 (304)
T 3l21_A 40 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLR----AVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAEGAH 112 (304)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 4445577899999998877764 789888777553 34444443 4799999866543 23 455678999
Q ss_pred EEEcC----CCCCHHHHHHHh
Q 016596 303 VVSLD----WTVDMAEGRRRL 319 (386)
Q Consensus 303 ~l~~d----~~~dl~e~~~~~ 319 (386)
++.+- ...+-+++.+.|
T Consensus 113 avlv~~P~y~~~s~~~l~~~f 133 (304)
T 3l21_A 113 GLLVVTPYYSKPPQRGLQAHF 133 (304)
T ss_dssp EEEEECCCSSCCCHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHH
Confidence 77442 124555554443
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=83.39 E-value=6.6 Score=37.22 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH----------HHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD----------FEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~----------f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-|.-.-+ .|+||.. ++.- ..+..++++++++..+.-++.+-+
T Consensus 156 I~~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR-~rf~~evv~aVr~~vg~~~v~vRl 234 (361)
T 3gka_A 156 IPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENR-ARLLLEVVDAAIDVWSAARVGVHL 234 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH-SHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhc-HHHHHHHHHHHHHHcCCCeEEEec
Confidence 334445555566667889999998865332 1444421 1111 234556666666543212677766
Q ss_pred cCCc------------c---hHHHHHhcCCCEEEcCCC----CCHHHHHHHhCCCeeEEecC
Q 016596 287 SGSG------------G---LLERLALTGVDVVSLDWT----VDMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 287 cG~~------------~---~l~~l~e~g~d~l~~d~~----~dl~e~~~~~g~~~~l~G~v 329 (386)
.+.. . +...+.+.|+|.+++... .-..++|+.++.-++..|++
T Consensus 235 s~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggi 296 (361)
T 3gka_A 235 APRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVNENF 296 (361)
T ss_dssp CTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEESSC
T ss_pred ccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 5421 1 235667789999987543 24678888887656666665
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=83.20 E-value=6.8 Score=37.16 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH----------HHHhhHHHHHHHHHHHHhhCCCCcEEEEe
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD----------FEEFSLPYLKQIVDTVKQTHPDLSLILYA 286 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~----------f~ef~~P~~k~l~~~i~~~~~~~~~~~H~ 286 (386)
++.+.+...+.++...++|.|+|-|.-.-+ .|+||.. ++.- ..+..++++++++..+.-++.+-+
T Consensus 148 I~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR-~rf~~eiv~aVr~~vg~~~v~vRl 226 (362)
T 4ab4_A 148 INDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENR-ARLLLEVTDAAIEVWGAQRVGVHL 226 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH-HHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhH-HHHHHHHHHHHHHhcCCCceEEEe
Confidence 334444455556667789999998864322 1444421 1111 335566666666643212677665
Q ss_pred cCCc------------c---hHHHHHhcCCCEEEcCCC----CCHHHHHHHhCCCeeEEecC
Q 016596 287 SGSG------------G---LLERLALTGVDVVSLDWT----VDMAEGRRRLGPDVAVQGNV 329 (386)
Q Consensus 287 cG~~------------~---~l~~l~e~g~d~l~~d~~----~dl~e~~~~~g~~~~l~G~v 329 (386)
.+.. . +...+.+.|+|.+++... .-..++|+.++.-++..|++
T Consensus 227 s~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggi 288 (362)
T 4ab4_A 227 APRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERF 288 (362)
T ss_dssp CTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEESSC
T ss_pred eccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEeCCC
Confidence 5431 1 135566789999987543 24678888887655666665
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=83.16 E-value=9.5 Score=35.34 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hH---HHHHhcCCCE
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LL---ERLALTGVDV 303 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l---~~l~e~g~d~ 303 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++..++. -+ ....+.|+|+
T Consensus 37 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~----~~v~~~~g---rvpViaGvg~~t~~ai~la~~A~~~Gada 109 (316)
T 3e96_A 37 ETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVR----RTVEYVHG---RALVVAGIGYATSTAIELGNAAKAAGADA 109 (316)
T ss_dssp HHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEEECSSHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHH----HHHHHhCC---CCcEEEEeCcCHHHHHHHHHHHHhcCCCE
Confidence 4444567899999998776664 799888777653 34455543 4799999854332 23 3445678887
Q ss_pred EEc
Q 016596 304 VSL 306 (386)
Q Consensus 304 l~~ 306 (386)
+.+
T Consensus 110 vlv 112 (316)
T 3e96_A 110 VMI 112 (316)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=83.11 E-value=10 Score=34.77 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|++++++..+.+. .+|.+..++.+. ..++.+... .+|++.|+.++.+ -+ ....+.|+
T Consensus 31 ~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g~--rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 31 ARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIE----IAVETCKGT--KVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp HHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHH----HHHHHHTTS--SCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCCC--CCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 34455677899999998777764 789887776543 334444320 3799999877654 23 45567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 105 davlv 109 (301)
T 3m5v_A 105 DGILS 109 (301)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98744
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=83.07 E-value=7.5 Score=34.24 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHHHhcCCCEE---
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERLALTGVDVV--- 304 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l~e~g~d~l--- 304 (386)
.|++.+.++|+|.|.+..... +...+.++.++++ |....+=+..++. .++.+.+. +|.+
T Consensus 78 ~~i~~~~~aGad~itvH~Ea~-------------~~~~~~i~~i~~~--G~k~gval~p~t~~e~l~~~l~~-~D~Vl~m 141 (228)
T 3ovp_A 78 QWVKPMAVAGANQYTFHLEAT-------------ENPGALIKDIREN--GMKVGLAIKPGTSVEYLAPWANQ-IDMALVM 141 (228)
T ss_dssp GGHHHHHHHTCSEEEEEGGGC-------------SCHHHHHHHHHHT--TCEEEEEECTTSCGGGTGGGGGG-CSEEEEE
T ss_pred HHHHHHHHcCCCEEEEccCCc-------------hhHHHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHhcc-CCeEEEe
Confidence 466778889999998853221 1246778888887 4555555554443 34444432 4543
Q ss_pred EcCCC--------CC---HHHHHHHhCC-CeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHH
Q 016596 305 SLDWT--------VD---MAEGRRRLGP-DVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEE 372 (386)
Q Consensus 305 ~~d~~--------~d---l~e~~~~~g~-~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~E 372 (386)
+++.. .. ++++++..++ .+.+-|||++ +.++++++.+.+ .+|.+++- +-.+-|.+
T Consensus 142 sv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~-----------~t~~~~~~aGAd-~~VvGsaI-f~a~dp~~ 208 (228)
T 3ovp_A 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP-----------DTVHKCAEAGAN-MIVSGSAI-MRSEDPRS 208 (228)
T ss_dssp SSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCST-----------TTHHHHHHHTCC-EEEESHHH-HTCSCHHH
T ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCH-----------HHHHHHHHcCCC-EEEEeHHH-hCCCCHHH
Confidence 22211 12 5666666543 3778999976 233444454433 56665431 11234678
Q ss_pred HHHHHHHHHHhh
Q 016596 373 NVAHFFEVAKAI 384 (386)
Q Consensus 373 ni~a~~~a~~~y 384 (386)
+++.+.+.++++
T Consensus 209 ~~~~l~~~~~~~ 220 (228)
T 3ovp_A 209 VINLLRNVCSEA 220 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=10 Score=36.00 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhCCCCcEEEEec-CCc--chHHHHHhcCCC----EE-EcCCCCCHHHHHHHh---CCCeeEEecCCcCc
Q 016596 265 YLKQIVDTVKQTHPDLSLILYAS-GSG--GLLERLALTGVD----VV-SLDWTVDMAEGRRRL---GPDVAVQGNVDPGA 333 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~c-G~~--~~l~~l~e~g~d----~l-~~d~~~dl~e~~~~~---g~~~~l~G~vd~~~ 333 (386)
.++..++..++. |.|+++|+- |.. ..++.+.+.|++ ++ +.+...|+..+++.+ |-.+.+-|.+ .
T Consensus 170 ~f~aq~~~A~e~--glPViiH~r~gr~a~d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~yI~f~g~~---~ 244 (363)
T 3ovg_A 170 ALEVAARTSILT--GCPILVHTQLGTMALEVAKHLIGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPD---R 244 (363)
T ss_dssp HHHHHHHHHHHH--CCCEEEEEETTCSHHHHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHHHCCEEEECCTT---C
T ss_pred HHHHHHHHHHHh--CCEEEEeCCCCCCHHHHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHHCCcEEEECCee---c
Confidence 344556666665 689999974 211 246777777765 23 445446787777655 7656565532 1
Q ss_pred c-CCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 334 L-FGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 334 l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
. +.+.++-.+.++++++.+....++|+++|.
T Consensus 245 ~~~~~~~~ra~~l~~lv~~~p~drILleTDap 276 (363)
T 3ovg_A 245 VKYYPDSLLAENIKYLVDKGLQKHITLSLDAG 276 (363)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCGGGEEECCCCC
T ss_pred cccCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 2 224455566778888776656899999986
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=82.85 E-value=12 Score=34.67 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 48 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---rvpViaGvg~~st~eai~la~~A~~~Gad 120 (314)
T 3qze_A 48 KLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR----RVVDQVKG---RIPVIAGTGANSTREAVALTEAAKSGGAD 120 (314)
T ss_dssp HHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 3344567799999998877764 799988877654 33444543 4799998877654 23 455678999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 121 avlv 124 (314)
T 3qze_A 121 ACLL 124 (314)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8744
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=82.66 E-value=20 Score=32.56 Aligned_cols=93 Identities=13% Similarity=0.270 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~ 301 (386)
++.++...++|+|++.+.-|.-.-.|++. +.-|++++.++. +.|++++.. |.. . .+..+.+.+
T Consensus 86 i~la~~a~~~Gadavlv~~P~y~~~s~~~----l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p- 155 (291)
T 3a5f_A 86 IAMSKWAESIGVDGLLVITPYYNKTTQKG----LVKHFKAVSDAV-----STPIIIYNVPGRTGLNITPGTLKELCEDK- 155 (291)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHH----HHHHC-CTGGGC-----CSCEEEEECHHHHSCCCCHHHHHHHTTST-
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCHHH----HHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHHcCC-
Confidence 55666777899999998777644445433 334555665544 468888764 322 2 234455543
Q ss_pred CEEEc-CCCCCHHHH---HHHhCCCeeEEecCCc
Q 016596 302 DVVSL-DWTVDMAEG---RRRLGPDVAVQGNVDP 331 (386)
Q Consensus 302 d~l~~-d~~~dl~e~---~~~~g~~~~l~G~vd~ 331 (386)
+++.+ +...|+... ++..+++..+..|-|.
T Consensus 156 nivgiK~s~gd~~~~~~~~~~~~~~f~v~~G~d~ 189 (291)
T 3a5f_A 156 NIVAVXEASGNISQIAQIKALCGDKLDIYSGNDD 189 (291)
T ss_dssp TEEEEEECSCCHHHHHHHHHHHGGGSEEEESCGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCeEEEeCcHH
Confidence 56665 444566544 4445545555554443
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=82.55 E-value=31 Score=32.02 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCEEEEec-CCcCCCCH----HHHHHhhHHHHHHHHHHHHhhC--CCCcEEEEecC-
Q 016596 219 ALLRKFTTSMAKYVQYQADNG--AQAVQIFD-SWATELSP----VDFEEFSLPYLKQIVDTVKQTH--PDLSLILYASG- 288 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G--~d~i~i~d-~~~~~iSp----~~f~ef~~P~~k~l~~~i~~~~--~~~~~~~H~cG- 288 (386)
++.+.+.++..+.++.+.+.| ++.+.+.- ...+++.| ..++ -...++++.++.+++.. ++.++++|...
T Consensus 104 ~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~-~~~~l~~~~~~avR~~~~~p~~~v~ih~~~~ 182 (332)
T 1hjs_A 104 NLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWA-NIARLLHSAAWGIKDSSLSPKPKIMIHLDNG 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHH-HHHHHHHHHHHHHHTSCCSSCCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHH-HHHHHHHHHHHHHHHhccCCCCeEEEEeCCc
Confidence 344455555555566677666 45555542 22223311 1222 33457777888888875 56678999873
Q ss_pred -Ccc----hHHHHHhcC------CCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCe
Q 016596 289 -SGG----LLERLALTG------VDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKH 357 (386)
Q Consensus 289 -~~~----~l~~l~e~g------~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~ 357 (386)
+.. +++.+.+.| +|++++....- +. . .++.+.+++.++++-+..++.-+
T Consensus 183 ~~~~~~~~~~d~~~~~g~~~~~~~DvIG~syYp~-------w~----------~---~~~~~~l~~~l~~~~~rygKpv~ 242 (332)
T 1hjs_A 183 WDWGTQNWWYTNVLKQGTLELSDFDMMGVSFYPF-------YS----------S---SATLSALKSSLDNMAKTWNKEIA 242 (332)
T ss_dssp TCHHHHHHHHHHHHTTSSSCGGGCCEEEEECCSS-------SC----------T---TCCHHHHHHHHHHHHHHHCCEEE
T ss_pred cchHHHHHHHHHHHhcCCCCCCCcCEEEEecCcc-------cC----------C---CCCHHHHHHHHHHHHHHHCCCEE
Confidence 221 247676555 67887765431 00 0 14677888887877777655566
Q ss_pred EEecCCCC
Q 016596 358 ILNLGHGI 365 (386)
Q Consensus 358 Ils~gc~i 365 (386)
|.-+||..
T Consensus 243 v~EtG~~~ 250 (332)
T 1hjs_A 243 VVETNWPI 250 (332)
T ss_dssp EEECCCCS
T ss_pred EEEccCcc
Confidence 77677643
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=82.42 E-value=14 Score=34.27 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLD 307 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d 307 (386)
..+++..+.+..+|.- +|+....-...+++..++..+.+.+.++|+.+|.+ |... .+...++.|+..+.+|
T Consensus 33 Ail~AAee~~sPvIlq-------~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiD 105 (323)
T 2isw_A 33 GIMKAVVQLKSPVILQ-------CSRGALKYSDMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMID 105 (323)
T ss_dssp HHHHHHHHTTCCEEEE-------EEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhCCCEEEE-------CChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCCeEEec
Confidence 3344555677777653 33332221223455556655555423689999986 4332 4677788999999887
Q ss_pred CC-C----CHHHHHHHhC----CCeeE------EecCC----cCccCCCHHHHHHHHHHH
Q 016596 308 WT-V----DMAEGRRRLG----PDVAV------QGNVD----PGALFGSKDFITNRINDT 348 (386)
Q Consensus 308 ~~-~----dl~e~~~~~g----~~~~l------~G~vd----~~~l~gt~eev~~~v~~~ 348 (386)
.. . +++..++... ..+++ .|+.. ...++-+|||+.+.+++.
T Consensus 106 gS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~T 165 (323)
T 2isw_A 106 ASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELT 165 (323)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------CCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHH
Confidence 54 2 3333333221 11222 12221 222478899988888754
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=82.32 E-value=27 Score=32.20 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAV 243 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i 243 (386)
.+.++...+..++.+||++.+++.- ++-.++.++...++|+|++
T Consensus 67 ~~v~~~~~~~~~grvpviaGvg~~~------------------------------------t~~ai~la~~a~~~Gadav 110 (318)
T 3qfe_A 67 AQLIATARKAVGPDFPIMAGVGAHS------------------------------------TRQVLEHINDASVAGANYV 110 (318)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCCSS------------------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCCC------------------------------------HHHHHHHHHHHHHcCCCEE
Confidence 3445556666677889988776541 1223344555667788888
Q ss_pred EEecCCc-C-CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCC-c-----c--hHHHHHh-cCCCEEEc-CCCCC
Q 016596 244 QIFDSWA-T-ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGS-G-----G--LLERLAL-TGVDVVSL-DWTVD 311 (386)
Q Consensus 244 ~i~d~~~-~-~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~-~-----~--~l~~l~e-~g~d~l~~-d~~~d 311 (386)
.+.-|.. . -.|+ +-+.-|++.+.++. +.|++++..-. + . .+..+.+ .+ +++.+ +...|
T Consensus 111 lv~~P~y~~kp~~~----~~l~~~f~~ia~a~-----~lPiilYn~P~~t~g~~l~~~~~~~La~~~p-nIvgiKdssgd 180 (318)
T 3qfe_A 111 LVLPPAYFGKATTP----PVIKSFFDDVSCQS-----PLPVVIYNFPGVCNGIDLDSDMITTIARKNP-NVVGVKLTCAS 180 (318)
T ss_dssp EECCCCC---CCCH----HHHHHHHHHHHHHC-----SSCEEEEECCC----CCCCHHHHHHHHHHCT-TEEEEEESSCC
T ss_pred EEeCCcccCCCCCH----HHHHHHHHHHHhhC-----CCCEEEEeCCcccCCCCCCHHHHHHHHhhCC-CEEEEEeCCCC
Confidence 8755532 1 1233 23444667777765 35777766522 1 1 1344454 44 56655 33456
Q ss_pred HHHH---HHHhC-CCeeEEecCCc
Q 016596 312 MAEG---RRRLG-PDVAVQGNVDP 331 (386)
Q Consensus 312 l~e~---~~~~g-~~~~l~G~vd~ 331 (386)
+... .+.++ ++..+..|-|.
T Consensus 181 ~~~~~~~~~~~~~~~f~v~~G~d~ 204 (318)
T 3qfe_A 181 VGKITRLAATLPPAAFSVFGGQSD 204 (318)
T ss_dssp HHHHHHHHHHSCGGGCEEEESCGG
T ss_pred HHHHHHHHHhcCCCCEEEEEecHH
Confidence 5443 33343 34555555543
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=82.09 E-value=10 Score=35.09 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 47 ~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---rvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 47 NFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIE----LCVEQVAK---RVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp HHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 4444577899999998777764 789888777553 34444443 4799998877654 23 455678999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 120 avlv 123 (315)
T 3si9_A 120 AVLV 123 (315)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=81.95 E-value=9.3 Score=36.97 Aligned_cols=121 Identities=10% Similarity=0.143 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCc----CCCCHHH------H--------HHhhHHHHHHHHHHHHhh-CCCCc
Q 016596 221 LRKFTTSMAKYVQYQADNGAQAVQIFDSWA----TELSPVD------F--------EEFSLPYLKQIVDTVKQT-HPDLS 281 (386)
Q Consensus 221 l~~~~~~~~~~~~~~~e~G~d~i~i~d~~~----~~iSp~~------f--------~ef~~P~~k~l~~~i~~~-~~~~~ 281 (386)
++.+.+...+.++...++|.|+|-|.-.-+ .|+||.. | -+|...-.+.+.+++.+. +++.+
T Consensus 165 I~~ii~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~ 244 (419)
T 3l5a_A 165 INSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFI 244 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCee
Confidence 444445555566667889999998865322 1455521 1 144444444444444221 23456
Q ss_pred EEEEecC---------Cc----c-hHHHHHh-cCCCEEEcCCC-----------------CC-HHHHHHHhCCCeeE--E
Q 016596 282 LILYASG---------SG----G-LLERLAL-TGVDVVSLDWT-----------------VD-MAEGRRRLGPDVAV--Q 326 (386)
Q Consensus 282 ~~~H~cG---------~~----~-~l~~l~e-~g~d~l~~d~~-----------------~d-l~e~~~~~g~~~~l--~ 326 (386)
+.+-+.. .. . +...+.+ .|+|.|++... .+ .+.+|+.+++++.+ .
T Consensus 245 v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~ 324 (419)
T 3l5a_A 245 LGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIAS 324 (419)
T ss_dssp EEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEEC
T ss_pred EEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEE
Confidence 7665543 11 1 2466778 89999876321 01 35677778654444 4
Q ss_pred ecCCcCccCCCHHHHHHHHHH
Q 016596 327 GNVDPGALFGSKDFITNRIND 347 (386)
Q Consensus 327 G~vd~~~l~gt~eev~~~v~~ 347 (386)
|+| .|+|+..+.+.+
T Consensus 325 GgI------~t~e~Ae~~L~~ 339 (419)
T 3l5a_A 325 GGI------NSPESALDALQH 339 (419)
T ss_dssp SSC------CSHHHHHHHGGG
T ss_pred CCC------CCHHHHHHHHHh
Confidence 554 345555554444
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=81.84 E-value=12 Score=34.03 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCC-CCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecC----CcchHHHHHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATE-LSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASG----SGGLLERLALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~-iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG----~~~~l~~l~e~g 300 (386)
+-.++.++...++|+|++.+.-|.-.- .|++ =+.-|++++.++. +.|++++..- ..--.+.+.++
T Consensus 78 ~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~L- 147 (288)
T 2nuw_A 78 NDVMELVKFSNEMDILGVSSHSPYYFPRLPEK----FLAKYYEEIARIS-----SHSLYIYNYPAATGYDIPPSILKSL- 147 (288)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCSSCSCCHH----HHHHHHHHHHHHC-----CSCEEEEECHHHHSCCCCHHHHTTT-
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHH----HHHHHHHHHHHhc-----CCCEEEEECchHhCcCCCHHHHhcc-
Confidence 344566777778999999987776444 4543 3555777887765 4688887643 22125777777
Q ss_pred CCEEEc-CCCCCHHHHHHH--hCCCeeEEecCC
Q 016596 301 VDVVSL-DWTVDMAEGRRR--LGPDVAVQGNVD 330 (386)
Q Consensus 301 ~d~l~~-d~~~dl~e~~~~--~g~~~~l~G~vd 330 (386)
+++.+ +...|+....+. .+++..+..|-|
T Consensus 148 -nIvgiKdssgd~~~~~~~~~~~~~f~v~~G~d 179 (288)
T 2nuw_A 148 -PVKGIKDTNQDLAHSLEYKLNLPGVKVYNGSN 179 (288)
T ss_dssp -TEEEEEECCSCHHHHHHHHHHSTTCEEEECCG
T ss_pred -EEEEEEeCCCCHHHHHHHHhcCCCeEEEECcH
Confidence 66666 444566544332 466666555554
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.79 E-value=11 Score=34.84 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 49 ~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 49 RSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVD----FTLKTVAH---RVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp HHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 4444567899999998877664 799888777554 34444443 4789999876654 23 455678999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 122 avlv 125 (315)
T 3na8_A 122 AVMV 125 (315)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=81.67 E-value=22 Score=32.72 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|++++++..+.+. .+|.+..++.+. ..++.+.. .+|++.++.++.+ -+ ....+.|+
T Consensus 32 ~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~Ga 104 (309)
T 3fkr_A 32 KRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTR----TILEHVAG---RVPVIVTTSHYSTQVCAARSLRAQQLGA 104 (309)
T ss_dssp HHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCchHHHHHHHHHHHHHcCC
Confidence 34455677899999998877764 799988777554 33444432 5799999877654 23 45567899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 105 davlv 109 (309)
T 3fkr_A 105 AMVMA 109 (309)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98744
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=81.67 E-value=33 Score=31.99 Aligned_cols=145 Identities=11% Similarity=0.051 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEe----cCCc----CCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEe-cC--Ccch
Q 016596 224 FTTSMAKYVQYQADNGAQAVQIF----DSWA----TELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYA-SG--SGGL 292 (386)
Q Consensus 224 ~~~~~~~~~~~~~e~G~d~i~i~----d~~~----~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~-cG--~~~~ 292 (386)
-++..+++++++.++|++.|=++ -+.+ ++...+.|+ .++++.+ ..++.++.... -| +...
T Consensus 28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e-----~l~~i~~----~~~~~~i~~l~~p~~~~~~~ 98 (345)
T 1nvm_A 28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLE-----YIEAVAG----EISHAQIATLLLPGIGSVHD 98 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHH-----HHHHHHT----TCSSSEEEEEECBTTBCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHH-----HHHHHHh----hCCCCEEEEEecCCcccHHH
Confidence 34556677788888999998764 1111 111122222 2333333 22345655552 22 2225
Q ss_pred HHHHHhcCCCEEEcCC-CC------CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 293 LERLALTGVDVVSLDW-TV------DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 293 l~~l~e~g~d~l~~d~-~~------dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
++...+.|++.+.+.. .. +..+..+..|- .+.+.+.. ...-++|.+.+.++++.+.+ -++++....+
T Consensus 99 i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~--~v~~~~~~-a~~~~~e~~~~ia~~~~~~G---a~~i~l~DT~ 172 (345)
T 1nvm_A 99 LKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGM--DTVGFLMM-SHMIPAEKLAEQGKLMESYG---ATCIYMADSG 172 (345)
T ss_dssp HHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTC--EEEEEEES-TTSSCHHHHHHHHHHHHHHT---CSEEEEECTT
T ss_pred HHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCC--EEEEEEEe-CCCCCHHHHHHHHHHHHHCC---CCEEEECCCc
Confidence 7888899999875522 11 22233344554 34444411 12567888888888777663 4456554333
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 016596 366 KVGTPEENVAHFFEVAKAI 384 (386)
Q Consensus 366 ~~~tp~Eni~a~~~a~~~y 384 (386)
-.. .|+.+..+++++++.
T Consensus 173 G~~-~P~~v~~lv~~l~~~ 190 (345)
T 1nvm_A 173 GAM-SMNDIRDRMRAFKAV 190 (345)
T ss_dssp CCC-CHHHHHHHHHHHHHH
T ss_pred Ccc-CHHHHHHHHHHHHHh
Confidence 333 477788888888763
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=81.65 E-value=32 Score=31.57 Aligned_cols=133 Identities=13% Similarity=0.116 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHh--cCCCE
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLAL--TGVDV 303 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e--~g~d~ 303 (386)
+..++.++.+++.|||.|-+.-. +..++++.--+-+.|.++.+-+.. ++|+.+-+- ++..++.-.+ .|.++
T Consensus 37 ~~a~~~A~~~v~~GAdiIDIg~g-~~~v~~~eem~rvv~~i~~~~~~~-----~vpisIDT~-~~~V~eaaL~~~~Ga~i 109 (300)
T 3k13_A 37 DEALSIARQQVEDGALVIDVNMD-DGLLDARTEMTTFLNLIMSEPEIA-----RVPVMIDSS-KWEVIEAGLKCLQGKSI 109 (300)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECC-CTTSCHHHHHHHHHHHHHTCHHHH-----TSCEEEECS-CHHHHHHHHHHCSSCCE
T ss_pred HHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHhhhcC-----CCeEEEeCC-CHHHHHHHHHhcCCCCE
Confidence 44556777899999999988753 235665443333455544332221 467655542 2234565566 59998
Q ss_pred EE-cCCCC------CHHHHHHHhCCCeeEEecCCcCccCCCHH---HHHHHHHHHH-HHcC--CCCeEEecCCC-CC
Q 016596 304 VS-LDWTV------DMAEGRRRLGPDVAVQGNVDPGALFGSKD---FITNRINDTV-RKAG--RWKHILNLGHG-IK 366 (386)
Q Consensus 304 l~-~d~~~------dl~e~~~~~g~~~~l~G~vd~~~l~gt~e---ev~~~v~~~i-~~~~--~~g~Ils~gc~-i~ 366 (386)
++ +.... .+..+.+++|-.+++|- .|....-.|.+ ++.+.+.+++ ...| ....|+-||-+ +.
T Consensus 110 INdIs~~~~d~~~~~~~~l~a~~ga~vV~mh-~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig~~g 185 (300)
T 3k13_A 110 VNSISLKEGEEVFLEHARIIKQYGAATVVMA-FDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFDPNVLAVA 185 (300)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHTCEEEEES-EETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEECCCCCCS
T ss_pred EEeCCcccCChhHHHHHHHHHHhCCeEEEEe-eCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccC
Confidence 84 43321 35567777887666653 22222222333 3444444554 4455 36899999885 43
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=81.55 E-value=6 Score=35.71 Aligned_cols=42 Identities=14% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhCCCCcEEEE-ecCCcc---h---HHHHHhcCCCEEEcCC
Q 016596 266 LKQIVDTVKQTHPDLSLILY-ASGSGG---L---LERLALTGVDVVSLDW 308 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H-~cG~~~---~---l~~l~e~g~d~l~~d~ 308 (386)
+++.++.+++.+ ...++-| .+|+.. . +..+.+.|+|++.++.
T Consensus 4 ~~~~f~~~~~~~-~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~ 52 (268)
T 1qop_A 4 YENLFAQLNDRR-EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGV 52 (268)
T ss_dssp HHHHHHHHHHTT-CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred HHHHHHHHHhcC-CceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 345555555432 2223333 578762 2 3556678999987754
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=81.47 E-value=8.6 Score=33.28 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCCEEE-Ee-cCCcCCCCHHHHHHhhH--------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--
Q 016596 230 KYVQYQADNGAQAVQ-IF-DSWATELSPVDFEEFSL--------------PYLKQIVDTVKQTHPDLSLILYASGSGG-- 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~-i~-d~~~~~iSp~~f~ef~~--------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~-- 291 (386)
+-++...++|+|.+- ++ ..+.-.+|++.-++... +...++.+.+.+.+ .-+++.+|+.+
T Consensus 13 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~---ld~vQLHG~e~~~ 89 (205)
T 1nsj_A 13 EDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQ---LNAVQLHGEEPIE 89 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHT---CSEEEECSCCCHH
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhC---CCEEEECCCCCHH
Confidence 345567789999764 33 34445899998887742 23455555555542 33667778653
Q ss_pred hHHHHH---------------------hcCCCEEEcCCC----------CCHHHHHH--HhCCCeeEEecCCcCccCCCH
Q 016596 292 LLERLA---------------------LTGVDVVSLDWT----------VDMAEGRR--RLGPDVAVQGNVDPGALFGSK 338 (386)
Q Consensus 292 ~l~~l~---------------------e~g~d~l~~d~~----------~dl~e~~~--~~g~~~~l~G~vd~~~l~gt~ 338 (386)
.+..+. ++.+|.+-+|.. .|...+++ .....+.|.||++|
T Consensus 90 ~~~~l~~~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~~~~~p~~LAGGL~p------- 162 (205)
T 1nsj_A 90 LCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGLNP------- 162 (205)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGGSSCEEEESSCCT-------
T ss_pred HHHHHhcCCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHHHHHhhhcCCCcEEEECCCCH-------
Confidence 233331 122333322210 23333322 11233555666544
Q ss_pred HHHHHHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHHHHHHHHHHh
Q 016596 339 DFITNRINDTVRKAGRWKHILNLGHGI-KVGTPEENVAHFFEVAKA 383 (386)
Q Consensus 339 eev~~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni~a~~~a~~~ 383 (386)
|.|.+.++. .+.-|.=+++|-+. |.--.++.|+++++++|.
T Consensus 163 eNV~~ai~~----~~p~gVDvsSGvE~~pG~KD~~ki~~fi~~~r~ 204 (205)
T 1nsj_A 163 ENVRSAIDV----VRPFAVDVSSGVEAFPGKKDHDSIKMFIKNAKG 204 (205)
T ss_dssp TTHHHHHHH----HCCSEEEESGGGEEETTEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHh----cCCCEEEECCceecCCCCcCHHHHHHHHHHHhh
Confidence 555444433 35557788888776 444589999999999885
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=81.28 E-value=12 Score=34.25 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|
T Consensus 23 l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~G 95 (297)
T 2rfg_A 23 LAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVA----LVAEQAQG---RVPVIAGAGSNNPVEAVRYAQHAQQAG 95 (297)
T ss_dssp HHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHH----HHHHHhCC---CCeEEEccCCCCHHHHHHHHHHHHhcC
Confidence 344556677899999998777664 699988777554 33444443 4789999887654 23 4445689
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 96 adavlv 101 (297)
T 2rfg_A 96 ADAVLC 101 (297)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998754
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=81.28 E-value=3.7 Score=37.33 Aligned_cols=108 Identities=11% Similarity=0.159 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCcc------hHHHHHhcCCCEEEcCCC----------------------CC------
Q 016596 266 LKQIVDTVKQTHPDLSLILYASGSGG------LLERLALTGVDVVSLDWT----------------------VD------ 311 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H~cG~~~------~l~~l~e~g~d~l~~d~~----------------------~d------ 311 (386)
+++.++.+++.+....+-+-+.|+-. .+..+.+.|+|++.+.-. ++
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~ 86 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFE 86 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 56667777765422233344568742 246667789999876311 11
Q ss_pred -HHHHHHH-hCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 312 -MAEGRRR-LGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 312 -l~e~~~~-~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++++|+. ..-.+.+||-.+|..-+|. .+.++++.+.+.+ |+|+ +|.|+|....+.+++++||
T Consensus 87 ~v~~~r~~~~~~Pivlm~Y~n~v~~~g~----~~f~~~~~~aGvd-GvIi-------pDlp~ee~~~~~~~~~~~g 150 (271)
T 3nav_A 87 LIAQIRARNPETPIGLLMYANLVYARGI----DDFYQRCQKAGVD-SVLI-------ADVPTNESQPFVAAAEKFG 150 (271)
T ss_dssp HHHHHHHHCTTSCEEEEECHHHHHHTCH----HHHHHHHHHHTCC-EEEE-------TTSCGGGCHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCEEEEecCcHHHHHhH----HHHHHHHHHCCCC-EEEE-------CCCCHHHHHHHHHHHHHcC
Confidence 1234444 2334666776666221343 4445555554323 5555 3455556666777777765
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=81.09 E-value=11 Score=35.34 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|+++|++..+.+. .+|.+..++++. .+++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 56 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~----~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~Gad 128 (343)
T 2v9d_A 56 ALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIAR----FAIDHVDR---RVPVLIGTGGTNARETIELSQHAQQAGAD 128 (343)
T ss_dssp HHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 3445577899999998877764 699988777553 34444443 4799999877654 23 444678999
Q ss_pred EEEcC----CCCCHHHHHHHh
Q 016596 303 VVSLD----WTVDMAEGRRRL 319 (386)
Q Consensus 303 ~l~~d----~~~dl~e~~~~~ 319 (386)
++.+- ...+-+++.+.|
T Consensus 129 avlv~~P~Y~~~s~~~l~~~f 149 (343)
T 2v9d_A 129 GIVVINPYYWKVSEANLIRYF 149 (343)
T ss_dssp EEEEECCSSSCCCHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHH
Confidence 77432 124555555444
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.02 E-value=14 Score=33.87 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+
T Consensus 27 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~Ga 99 (294)
T 3b4u_A 27 IAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILS----SFIAAGIA---PSRIVTGVLVDSIEDAADQSAEALNAGA 99 (294)
T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHTTCC---GGGEEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCccHHHHHHHHHHHHhcCC
Confidence 34455677899999998877764 699887776543 33333332 4789999887653 23 44457899
Q ss_pred CEEEc
Q 016596 302 DVVSL 306 (386)
Q Consensus 302 d~l~~ 306 (386)
|++.+
T Consensus 100 davlv 104 (294)
T 3b4u_A 100 RNILL 104 (294)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98754
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=80.89 E-value=5.6 Score=36.03 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCcc------hHHHHHhcCCCEEEcC
Q 016596 266 LKQIVDTVKQTHPDLSLILYASGSGG------LLERLALTGVDVVSLD 307 (386)
Q Consensus 266 ~k~l~~~i~~~~~~~~~~~H~cG~~~------~l~~l~e~g~d~l~~d 307 (386)
+++.++.+++.+....+-+-++|+.. .+..+.+.|+|++.++
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElg 52 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELG 52 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 55667777665422333345678752 2466677899999775
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=80.74 E-value=10 Score=35.55 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CCcEEEEecCCcch-H---HHHHhcC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP-DLSLILYASGSGGL-L---ERLALTG 300 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~-~~~~~~H~cG~~~~-l---~~l~e~g 300 (386)
+.+.+.++.+.++|++.|.+.|..+. ..|..+.+++ +.+++..+ +.|+-+|++-+... + -.-.+.|
T Consensus 149 e~~~~ia~~~~~~Ga~~i~l~DT~G~-~~P~~v~~lv--------~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aG 219 (345)
T 1nvm_A 149 EKLAEQGKLMESYGATCIYMADSGGA-MSMNDIRDRM--------RAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEG 219 (345)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTCC-CCHHHHHHHH--------HHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCc-cCHHHHHHHH--------HHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcC
Confidence 44455556667789999999888765 4577666543 44444432 57899999987652 2 3335789
Q ss_pred CCEEE
Q 016596 301 VDVVS 305 (386)
Q Consensus 301 ~d~l~ 305 (386)
++.+.
T Consensus 220 a~~vd 224 (345)
T 1nvm_A 220 CDRVD 224 (345)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 99885
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=80.71 E-value=6.4 Score=40.91 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCC
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGV 301 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~ 301 (386)
++.++.++++.++|++.|.+.|..+ .+.|..+.++ +..+++..++.++-+|++-+... + ..+ .+.|+
T Consensus 261 e~~~~~a~~l~~~Ga~~I~l~DT~G-~~~P~~v~~l--------V~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa 331 (718)
T 3bg3_A 261 QYYMGLAEELVRAGTHILCIKDMAG-LLKPTACTML--------VSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGA 331 (718)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTS-CCCHHHHHHH--------HHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcCC-CcCHHHHHHH--------HHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCC
Confidence 4555667778889999999988766 5677776654 34444433346889999887652 2 333 46899
Q ss_pred CEEEc-----CC---CCCHHHHHHHhCC
Q 016596 302 DVVSL-----DW---TVDMAEGRRRLGP 321 (386)
Q Consensus 302 d~l~~-----d~---~~dl~e~~~~~g~ 321 (386)
+.+.. .. ..+++++...+..
T Consensus 332 ~~VD~ti~GlGertGN~~lE~vv~~L~~ 359 (718)
T 3bg3_A 332 DVVDVAADSMSGMTSQPSMGALVACTRG 359 (718)
T ss_dssp SEEEEBCGGGCSTTSCCBHHHHHHHHTT
T ss_pred CEEEecCcccccccCchhHHHHHHHHHh
Confidence 98853 22 3578887777754
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=80.67 E-value=20 Score=30.82 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=81.2
Q ss_pred HHHHHHHHhCCCEEE-Ee-cCCcCCCCHHHHHHhhH--------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--
Q 016596 230 KYVQYQADNGAQAVQ-IF-DSWATELSPVDFEEFSL--------------PYLKQIVDTVKQTHPDLSLILYASGSGG-- 291 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~-i~-d~~~~~iSp~~f~ef~~--------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~-- 291 (386)
+-+++..++|+|.+- ++ ..+.-.+||+.-++... +...++.+.+.+. + .-+++.+|+.+
T Consensus 12 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~--~-ld~vQLHG~e~~~ 88 (203)
T 1v5x_A 12 EDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEA--R-LQVAQLHGEEPPE 88 (203)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHT--T-CSEEEECSCCCHH
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhh--C-CCEEEECCCCCHH
Confidence 345567789999764 33 34445899998887742 2345555666654 2 34667778754
Q ss_pred hHHHHH--------------------hcCCCEEEcCC-------CCCHHHHHH--HhCCCeeEEecCCcCccCCCHHHHH
Q 016596 292 LLERLA--------------------LTGVDVVSLDW-------TVDMAEGRR--RLGPDVAVQGNVDPGALFGSKDFIT 342 (386)
Q Consensus 292 ~l~~l~--------------------e~g~d~l~~d~-------~~dl~e~~~--~~g~~~~l~G~vd~~~l~gt~eev~ 342 (386)
.+..+. ++.+|.+-+|. ..|...+++ .....+.|.||++| |.|.
T Consensus 89 ~~~~l~~~~~vika~~v~~~~~l~~~~~~~d~~LlD~~~gGtG~~fdW~~l~~~~~~~~p~~LAGGL~p-------eNV~ 161 (203)
T 1v5x_A 89 WAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLLATGRRVILAGGIAP-------ENLE 161 (203)
T ss_dssp HHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHHHTTSCEEECSSCCS-------TTHH
T ss_pred HHHHhccCCCEEEEEEcCChHhhhhhhcCCCEEEEcCCCCCCCCccCHHHHHhhhccCCcEEEECCCCH-------HHHH
Confidence 244442 11123333332 124433333 11234666676655 4444
Q ss_pred HHHHHHHHHcCCCCeEEecCCCC-CCCCcHHHHHHHHHHHHhhc
Q 016596 343 NRINDTVRKAGRWKHILNLGHGI-KVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 343 ~~v~~~i~~~~~~g~Ils~gc~i-~~~tp~Eni~a~~~a~~~yg 385 (386)
+.+ ..+.-|.=+++|-+. |.--.++.|+++++++|.+.
T Consensus 162 ~ai-----~~~p~gVDvsSGvE~~pG~KD~~ki~~fi~~~r~~~ 200 (203)
T 1v5x_A 162 EVL-----ALRPYALDLASGVEEAPGVKSAEKLRALFARLASLR 200 (203)
T ss_dssp HHH-----HHCCSEEEESGGGEEETTEECHHHHHHHHHHHHHTC
T ss_pred HHH-----hcCCCEEEeCCceecCCCCcCHHHHHHHHHHHHHhh
Confidence 433 335557778888776 44468999999999999763
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=80.49 E-value=35 Score=31.34 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCC-CE
Q 016596 164 GKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGA-QA 242 (386)
Q Consensus 164 ~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~-d~ 242 (386)
.+.++...+..++.+||++.+++.- ++-.++.++...++|+ |+
T Consensus 63 ~~v~~~~~~~~~grvpViaGvg~~~------------------------------------t~~ai~la~~A~~~Ga~da 106 (311)
T 3h5d_A 63 LELFAAVQKVVNGRVPLIAGVGTND------------------------------------TRDSIEFVKEVAEFGGFAA 106 (311)
T ss_dssp HHHHHHHHHHSCSSSCEEEECCCSS------------------------------------HHHHHHHHHHHHHSCCCSE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCcC------------------------------------HHHHHHHHHHHHhcCCCcE
Confidence 4455666677777788887765431 1222455666778887 99
Q ss_pred EEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCCEEEc-CCCCCHHH
Q 016596 243 VQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVDVVSL-DWTVDMAE 314 (386)
Q Consensus 243 i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d~l~~-d~~~dl~e 314 (386)
+.+.-|.-.-.|++. +.-|++++.++. +.|++++.+ |.. . .+..+.+.+ +++.+ +.. |+..
T Consensus 107 vlv~~P~y~~~s~~~----l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdss-d~~~ 175 (311)
T 3h5d_A 107 GLAIVPYYNKPSQEG----MYQHFKAIADAS-----DLPIIIYNIPGRVVVELTPETMLRLADHP-NIIGVKECT-SLAN 175 (311)
T ss_dssp EEEECCCSSCCCHHH----HHHHHHHHHHSC-----SSCEEEEECHHHHSSCCCHHHHHHHHTST-TEEEEEECS-CHHH
T ss_pred EEEcCCCCCCCCHHH----HHHHHHHHHHhC-----CCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEEEeCC-CHHH
Confidence 988777654445433 445777777775 468888764 432 2 245566653 56655 334 7654
Q ss_pred H---HHHhCCCeeEEecCCc
Q 016596 315 G---RRRLGPDVAVQGNVDP 331 (386)
Q Consensus 315 ~---~~~~g~~~~l~G~vd~ 331 (386)
. .+..+++..+..|-|.
T Consensus 176 ~~~~~~~~~~~f~v~~G~d~ 195 (311)
T 3h5d_A 176 MAYLIEHKPEEFLIYTGEDG 195 (311)
T ss_dssp HHHHHHHCCSSCEEEECCGG
T ss_pred HHHHHHHcCCCEEEEECcHH
Confidence 4 4445666666655554
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=80.42 E-value=9.5 Score=34.95 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC---CCcEEEEecCCcch-H-HHH--Hhc
Q 016596 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP---DLSLILYASGSGGL-L-ERL--ALT 299 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~---~~~~~~H~cG~~~~-l-~~l--~e~ 299 (386)
+..+.++.+.++|++.|.++|..+ .+.|..+.+++ +.+++..+ ++++-+|++-+... + ..+ .+.
T Consensus 151 ~~~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~lv--------~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~a 221 (293)
T 3ewb_X 151 FLIEAVQTAIDAGATVINIPDTVG-YTNPTEFGQLF--------QDLRREIKQFDDIIFASHCHDDLGMATANALAAIEN 221 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSS-CCCHHHHHHHH--------HHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC-CCCHHHHHHHH--------HHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHh
Confidence 445556677788999999988776 47887776644 33333322 25688999988652 3 333 468
Q ss_pred CCCEEE
Q 016596 300 GVDVVS 305 (386)
Q Consensus 300 g~d~l~ 305 (386)
|++.+.
T Consensus 222 Ga~~vd 227 (293)
T 3ewb_X 222 GARRVE 227 (293)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 999885
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=80.28 E-value=11 Score=34.63 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|++++++..+.+. .+|.+..++++. ..++.+.. .+|++.++.++.+ -+ ....+.|+|
T Consensus 41 ~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~st~~ai~la~~A~~~Gad 113 (304)
T 3cpr_A 41 EVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLK----AVREEVGD---RAKLIAGVGTNNTRTSVELAEAAASAGAD 113 (304)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHH----HHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence 3444567889999998877764 699988777553 33444443 4799999887654 23 445678999
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 114 avlv 117 (304)
T 3cpr_A 114 GLLV 117 (304)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7743
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=80.16 E-value=17 Score=33.19 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .+|.+..++++.- .++.+.. .+|++.|+.++.+ -+ ....+.|
T Consensus 25 l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~----~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~G 97 (292)
T 3daq_A 25 LKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKT----VIDLVDK---RVPVIAGTGTNDTEKSIQASIQAKALG 97 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHH----HHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHH----HHHHhCC---CCcEEEeCCcccHHHHHHHHHHHHHcC
Confidence 334455677899999998877764 7898888776543 3444432 5799999866543 23 4456789
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 98 adavlv 103 (292)
T 3daq_A 98 ADAIML 103 (292)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 997743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 386 | ||||
| d1j93a_ | 343 | c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD | 1e-91 | |
| d1r3sa_ | 356 | c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD | 8e-85 |
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
Score = 277 bits (708), Expect = 1e-91
Identities = 294/342 (85%), Positives = 328/342 (95%)
Query: 45 EPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWH 104
+P+LL AVRG++VERPPVWLMRQAGRYMKSYQ++CEKYP FR+RSENVDLVVEISLQPW
Sbjct: 2 QPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWK 61
Query: 105 VFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVG 164
VF+PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDP+ T A+V++VREF PE+SVPYVG
Sbjct: 62 VFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVG 121
Query: 165 KALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKF 224
+ALTILR+EVNN+AAVLGFVGAPFTLASYVVEGGSSK+F+KIKRLAF++PKVLHALL+KF
Sbjct: 122 EALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQKF 181
Query: 225 TTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLIL 284
TSMAKY++YQAD+GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+VK THP+L LIL
Sbjct: 182 ATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLIL 241
Query: 285 YASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNR 344
YASGSGGLLERL LTGVDVVSLDWTVDMA+GRRRLGP+VA+QGNVDPG LFGSK+FITNR
Sbjct: 242 YASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNR 301
Query: 345 INDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAKAIRY 386
INDTV+KAG+ KHILNLGHGIKVGTPEEN AHFFE+AK +RY
Sbjct: 302 INDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 343
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Score = 260 bits (664), Expect = 8e-85
Identities = 114/341 (33%), Positives = 183/341 (53%), Gaps = 7/341 (2%)
Query: 48 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFK 107
L+A GE+ + PVW MRQAGRY+ ++ F + + E++LQP F
Sbjct: 9 FLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFP 67
Query: 108 PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREF-DPEESVPYVGKA 166
D I+FS IL + + ++ GKGP +P+ + +++++R+ + YV +A
Sbjct: 68 LDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQA 127
Query: 167 LTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTT 226
+T+ R+ + ++GF GAP+TL +Y+VEGG S ++ KR + +P+ H LLR T
Sbjct: 128 ITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRILTD 187
Query: 227 SMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSL---- 282
++ Y+ Q GAQA+Q+F+S A L P F +F+LPY++ + VK + L
Sbjct: 188 ALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVP 247
Query: 283 -ILYASGSGGLLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFI 341
I++A LE LA G +VV LDWTV + R +G V +QGN+DP AL+ S++ I
Sbjct: 248 MIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEI 307
Query: 342 TNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFFEVAK 382
+ + G ++I NLGHG+ E+V F +
Sbjct: 308 GQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVH 348
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 100.0 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.97 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.59 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 94.8 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 93.59 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 92.21 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 90.53 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 90.4 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 90.38 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 89.6 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 89.11 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 88.38 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 88.12 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 87.59 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 87.59 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 86.99 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 85.57 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 85.36 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 84.5 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 83.93 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 83.54 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 82.14 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 82.09 |
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-71 Score=536.66 Aligned_cols=345 Identities=32% Similarity=0.588 Sum_probs=321.5
Q ss_pred CCCCchHHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeecccccc
Q 016596 40 NVSVAEPMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILT 119 (386)
Q Consensus 40 ~~~~~~ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~ 119 (386)
|++.++||+++|++||++||+|||+|+|||||+|+|++++++. +|.|+|+|||+++|++++++++||+|++++++|+++
T Consensus 1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~-~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~ 79 (356)
T d1r3sa_ 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILV 79 (356)
T ss_dssp CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTS-CHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTH
T ss_pred CCCcchHHHHHHHcCCCCCCCCEEEEecccccCHHHHHHHhcC-CHHHHhcCHHHHHHHHhhHHHhCCcceeeeccccch
Confidence 5677899999999999999999999999999999999999876 599999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCCCccCCCCCChHHHhccCCCCC-CCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCC
Q 016596 120 PLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDP-EESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGG 198 (386)
Q Consensus 120 ~~e~~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~-~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~ 198 (386)
++++||+++.|.++.+|.+..++.+.+|+.++..++. .++++.++++++++++++++++|++|+++||||+++++++++
T Consensus 80 ~~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~ 159 (356)
T d1r3sa_ 80 VPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGG 159 (356)
T ss_dssp HHHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSS
T ss_pred hhhhcCceeeecCCCCccCCcccccchhhhhcccchhhhhhhHHHHHHHHHHHHHhccccccceeeechHHHHHHHHhcc
Confidence 9999999999998888888778888888877766543 457899999999999999999999999999999999999887
Q ss_pred CchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCC
Q 016596 199 SSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHP 278 (386)
Q Consensus 199 ~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~ 278 (386)
+..++.++..+++++||.++++++++++.+++|+++|+++|||+|+++|+|++.+||++|++|+.||++++++.+++...
T Consensus 160 ~~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~ 239 (356)
T d1r3sa_ 160 GSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLR 239 (356)
T ss_dssp CCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999987410
Q ss_pred ----CCcEEEEecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcC
Q 016596 279 ----DLSLILYASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAG 353 (386)
Q Consensus 279 ----~~~~~~H~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~ 353 (386)
.....+|.||+.. .++.+.++|++++++|+.+|+.++++.+|++++|+||+||..|.+++|+|+++|+++++.++
T Consensus 240 ~~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~ 319 (356)
T d1r3sa_ 240 EAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFG 319 (356)
T ss_dssp HTTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHC
T ss_pred cccCCCceeeecchhHHHHHHHHhccCcccccccccCCHHHHHHHhCCCeeEEeCCCHHHHcCCHHHHHHHHHHHHHHhC
Confidence 1124688898887 68999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCeEEecCCCCCCCCcHHHHHHHHHHHHhhc
Q 016596 354 RWKHILNLGHGIKVGTPEENVAHFFEVAKAIR 385 (386)
Q Consensus 354 ~~g~Ils~gc~i~~~tp~Eni~a~~~a~~~yg 385 (386)
++|||+++||+++|+||+||++||+++||+||
T Consensus 320 ~~~~I~nlGhGI~p~tp~env~a~v~~vr~~~ 351 (356)
T d1r3sa_ 320 PHRYIANLGHGLYPDMDPEHVGAFVDAVHKHS 351 (356)
T ss_dssp SSSEEEEESSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEeCCCCcCCCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999997
|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
Probab=100.00 E-value=3.3e-70 Score=528.38 Aligned_cols=340 Identities=84% Similarity=1.352 Sum_probs=319.5
Q ss_pred HHHHHHHcCCCCCCcccccchhhhhchHHHHHHHhccccHHHhhcCHHHHHHHhhhhHHHhCCCeeeeccccccccccCC
Q 016596 46 PMLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMN 125 (386)
Q Consensus 46 ERv~aal~~e~~DRvPv~~~~~~g~~~~~y~~~~~~~~~~~e~~~d~e~~aea~~~~~~~f~~D~~~~~~d~~~~~e~~G 125 (386)
..+++||+||++||+|||+|+|||||+|+|+++++.+++|.|+|.|||++++++++++++||+|++.+++|+.+++++||
T Consensus 3 ~~~l~al~g~~~dr~PVw~mrqaGr~~pey~~~r~~~~~f~e~~~~pe~~ae~~l~~~~~f~~D~~i~fsDil~~~ea~G 82 (343)
T d1j93a_ 3 PLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMN 82 (343)
T ss_dssp CHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTHHHHTT
T ss_pred hHHHHHHcCCCCCCCCEEEEecccccCHHHHHHHHhcCcHHHHhcCHHHHHHHHHhHHHHcCCCeeeeecccchhHHHhc
Confidence 46899999999999999999999999999999999887799999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCccCCCCCChHHHhccCCCCCCCChhHHHHHHHHHHHHhCCceeEEeecCcHHHHHHHHHcCCCchhHHH
Q 016596 126 IPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 205 (386)
Q Consensus 126 ~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPft~a~~l~~g~~~~~~~~ 205 (386)
+++.+.++.+|++..++.+.++.+++..+++.++++.++++++.+++++++++|++|+++||||++++++++++.+++.+
T Consensus 83 ~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~~~l~~~~~ligf~ggP~Tla~yl~~~~~~~~~~~ 162 (343)
T d1j93a_ 83 IPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTK 162 (343)
T ss_dssp CCEEEETTTEEEESSCCCSHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHH
T ss_pred CccccccCCCccccccccchhhhcccccccchhcccchHHHHHHHHHhcccccceeeehHhHHHHHHHHHccccccchhh
Confidence 99999988888888888888888888777766789999999999999999999999999999999999998767788889
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEE
Q 016596 206 IKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILY 285 (386)
Q Consensus 206 ~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H 285 (386)
+.++++++|+.++++++.+++.+++++++|+++|||+|+++|+|++.+||++|++|+.||++++++.+++.+++.+ ++|
T Consensus 163 ~~~~~~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~-~~~ 241 (343)
T d1j93a_ 163 IKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLP-LIL 241 (343)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCC-EEE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCc-eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865556 556
Q ss_pred ecCCcc-hHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCC
Q 016596 286 ASGSGG-LLERLALTGVDVVSLDWTVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHG 364 (386)
Q Consensus 286 ~cG~~~-~l~~l~e~g~d~l~~d~~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~ 364 (386)
.|++.. .++.+.++|++++++|+.+|+.++++.+|++++|+||+||..|.||+|+|+++++++++.++++|||+++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~is~d~~~~l~~a~~~~~~~~~iqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~~lGhg 321 (343)
T d1j93a_ 242 YASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHG 321 (343)
T ss_dssp ECSSCTTTGGGGGGGCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSC
T ss_pred ecccccchhhhhhccCccccccccccchHHHHHHhCCCeEEEeCCChHHHcCCHHHHHHHHHHHHHhcCCCCcEEECCCC
Confidence 666555 6899999999999999999999999999999999999999888899999999999999999988999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhcC
Q 016596 365 IKVGTPEENVAHFFEVAKAIRY 386 (386)
Q Consensus 365 i~~~tp~Eni~a~~~a~~~yg~ 386 (386)
++++||+||++||++++|+|+|
T Consensus 322 i~~~Tp~eNv~a~v~~vr~~~y 343 (343)
T d1j93a_ 322 IKVGTPEENFAHFFEIAKGLRY 343 (343)
T ss_dssp CCTTCCHHHHHHHHHHHHTCCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.97 E-value=1.1e-08 Score=96.83 Aligned_cols=189 Identities=13% Similarity=0.145 Sum_probs=132.3
Q ss_pred eeEEeecCcHHHHHHHHHcCCCchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCcC-CC--C
Q 016596 178 AAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHALLRKFTTSMAKYVQYQADNGAQAVQIFDSWAT-EL--S 254 (386)
Q Consensus 178 ~~v~~~~~gPft~a~~l~~g~~~~~~~~~~~~l~~~Pe~v~~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~~~-~i--S 254 (386)
.++...+.||.+++..... + -|.+.+ ++++.+...+.+.++.+.++|++.|++-+|.-. .+ .
T Consensus 157 ~~~k~~i~gp~~l~~~~~~----~--------~y~~~~---e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~ 221 (365)
T d1u1ha2 157 RPMKGMLTGPVTILNWSFV----R--------NDQPRH---ETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLR 221 (365)
T ss_dssp SCBEEEEECHHHHHHTSEE----C--------SSSCHH---HHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSS
T ss_pred ccccccccceeEEeeeccc----c--------CCCCHH---HHHHHHHHHHHHHHHHHHhcCCcEEEeCchHHhhhhccc
Confidence 3455677899887644322 1 134443 567777888888899999999999999887532 22 2
Q ss_pred ---HHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc-hHHHHHhcCCCEEEcCCCC-C---HHHHHHHhC-CCee
Q 016596 255 ---PVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG-LLERLALTGVDVVSLDWTV-D---MAEGRRRLG-PDVA 324 (386)
Q Consensus 255 ---p~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~-~l~~l~e~g~d~l~~d~~~-d---l~e~~~~~g-~~~~ 324 (386)
++.+.++....++..+..+.. +..+.+|+| |+.. .++.+.+++++.++++... + +...+..++ +|..
T Consensus 222 ~~~~~~~~~~~~~~~n~~~~~~~~---~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l 298 (365)
T d1u1ha2 222 KSEHAFYLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 298 (365)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTSCT---TSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEE
T ss_pred cccHHHHHHHHHHHHHHHHhcccc---cceEEEEecccccchhHHHHhcCCcccchhhhccCchHHHHHHHhhCCCCCEE
Confidence 333334444444444443332 346788999 5555 6899999999999998643 1 222233344 5677
Q ss_pred EEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC---CCcHHHHHHHHHHHHhh
Q 016596 325 VQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGIKV---GTPEENVAHFFEVAKAI 384 (386)
Q Consensus 325 l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~---~tp~Eni~a~~~a~~~y 384 (386)
..|-||...- ..++|+|.+.+++.++..+....+++|+||+.. +.-.+.+++|+++|+.-
T Consensus 299 ~~GVVd~r~~~~E~~e~v~~ri~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~v 362 (365)
T d1u1ha2 299 GPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLI 362 (365)
T ss_dssp EECCSCTTSSSCCCHHHHHHHHHHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCChhhEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7899998776 899999999999999999867999999999864 33445888999998863
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.59 E-value=1e-07 Score=90.81 Aligned_cols=147 Identities=13% Similarity=0.081 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCC-cCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec-CCcc--hHH
Q 016596 219 ALLRKFTTSMAKYVQYQADNGAQAVQIFDSW-ATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS-GSGG--LLE 294 (386)
Q Consensus 219 ~ll~~~~~~~~~~~~~~~e~G~d~i~i~d~~-~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c-G~~~--~l~ 294 (386)
++++.+.+...+.++.+.++|+..|++-+|. +.-++++ +.+.+...+.+ +.+..++.++.+|+| |+.. ..+
T Consensus 178 ~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~-~~~~~~~ay~~----l~~~~~~~~i~l~tyfg~~~~~~~~ 252 (394)
T d1u1ha1 178 SLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQ-KLQAFTGAYAE----LESTLSGLNVLVETYFADIPAEAYK 252 (394)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHH-HHHHHHHHHHH----HTTTTTTSEEEEECCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCEEEeeccchhccCCHH-HHHHHHHHHHH----HHhhcCCCCceEEeccCCCchhhHH
Confidence 5788888888888999999999999998875 4456654 44444444444 433223568899998 6763 467
Q ss_pred HHHhc-CCCEEEcCCC---CCHHHHHHHhC-CCeeEEecCCcCcc-CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC---
Q 016596 295 RLALT-GVDVVSLDWT---VDMAEGRRRLG-PDVAVQGNVDPGAL-FGSKDFITNRINDTVRKAGRWKHILNLGHGI--- 365 (386)
Q Consensus 295 ~l~e~-g~d~l~~d~~---~dl~e~~~~~g-~~~~l~G~vd~~~l-~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i--- 365 (386)
.+... +++++++|.. .++......++ +++...|-||.... ..+++++.+.++++.+..+....+++|+|++
T Consensus 253 ~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~erl~lspsCsLlh~ 332 (394)
T d1u1ha1 253 TLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHT 332 (394)
T ss_dssp HHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSCEEEEESSCGGGS
T ss_pred HHhhcCCCCeeEEEeecCccchHHHHHhCCcccEEEeeeEecCCCCcCCHHHHHHHHHHHHHhCCcccEEEeCCCCCcCC
Confidence 77765 6999998753 34556665665 56777899999877 8999999999999999998779999999996
Q ss_pred CCCCc
Q 016596 366 KVGTP 370 (386)
Q Consensus 366 ~~~tp 370 (386)
|.++.
T Consensus 333 P~~~~ 337 (394)
T d1u1ha1 333 AVDLI 337 (394)
T ss_dssp CSCGG
T ss_pred CCcCc
Confidence 54443
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=94.80 E-value=0.43 Score=41.46 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGV 301 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~ 301 (386)
..++.++.+++.|||.|-++- |.+..+|++.-.+-+.|..+.+.+.. +.++ =++-... ......+.|+
T Consensus 43 ~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~-----~~~i--SIDT~~~~Va~~al~~G~ 115 (273)
T d1tx2a_ 43 AAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-----KLPI--SIDTYKAEVAKQAIEAGA 115 (273)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-----CSCE--EEECSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccc-----eEEE--ehHHhhHHHHHHHHHcCC
Confidence 455667778999999998875 23458999888888888877665442 3343 2222222 3677788999
Q ss_pred CEEE-cCC-C--CCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHH---cC--CCCeEEecCCCCCCCCcHH
Q 016596 302 DVVS-LDW-T--VDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRK---AG--RWKHILNLGHGIKVGTPEE 372 (386)
Q Consensus 302 d~l~-~d~-~--~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~---~~--~~g~Ils~gc~i~~~tp~E 372 (386)
++++ +.. . ..+.++.+..+-.+++|-+-....-....+++.....+.++. .| ....|+-||-+.. .+...
T Consensus 116 ~iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFg-K~~~~ 194 (273)
T d1tx2a_ 116 HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFA-KTPEQ 194 (273)
T ss_dssp CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS-CCHHH
T ss_pred eEEeccccccchhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCcc-chHHH
Confidence 9996 432 2 247788888887788875322111123344444444333333 23 4689999998864 56677
Q ss_pred HHHHH
Q 016596 373 NVAHF 377 (386)
Q Consensus 373 ni~a~ 377 (386)
|+.-+
T Consensus 195 n~~ll 199 (273)
T d1tx2a_ 195 NLEAM 199 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=93.59 E-value=0.9 Score=38.07 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC-
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT- 309 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~- 309 (386)
.++..++.|++.|++-+....-++.+.+.+.. +++.+.++++ +++.++|. .++...++++|++++...
T Consensus 35 ~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a----~~l~~lc~~~--~~~liInd-----~~~lA~~~~adGvHl~~~d 103 (226)
T d2tpsa_ 35 VVQKALKGGATLYQFREKGGDALTGEARIKFA----EKAQAACREA--GVPFIVND-----DVELALNLKADGIHIGQED 103 (226)
T ss_dssp HHHHHHHHTCSEEEECCCSTTCCCHHHHHHHH----HHHHHHHHHH--TCCEEEES-----CHHHHHHHTCSEEEECTTS
T ss_pred HHHHHHHCCCCEEEEcCCCccchhHHHHHHHH----HHHHHHHHHh--CCeEEEcC-----CHHHHhhccCCEEEecccc
Confidence 35567788999999877666567777666554 5666667766 56777764 256667789999999754
Q ss_pred CCHHHHHHHhCCC
Q 016596 310 VDMAEGRRRLGPD 322 (386)
Q Consensus 310 ~dl~e~~~~~g~~ 322 (386)
.++.++++.++.+
T Consensus 104 ~~~~~~r~~~~~~ 116 (226)
T d2tpsa_ 104 ANAKEVRAAIGDM 116 (226)
T ss_dssp SCHHHHHHHHTTS
T ss_pred chhhhhhhcccce
Confidence 5788888888764
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=92.21 E-value=1.1 Score=38.84 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~ 301 (386)
.++++.+++.|+++|++....+. .+|.+.+++++. .+.+..+. .+|++.++.+... .+ ....++|+
T Consensus 26 ~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~----~~~~~~~~---~~pvi~gv~~~s~~~~i~~a~~a~~~Ga 98 (295)
T d1hl2a_ 26 RRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLE----IVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRYGF 98 (295)
T ss_dssp HHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHh----hhHHhhcc---ccceeeccccchhhHHHHHHHHHHhcCC
Confidence 34445567889999998876654 799998877553 44455543 4688777766543 13 33445677
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.+.
T Consensus 99 d~~~ 102 (295)
T d1hl2a_ 99 DAVS 102 (295)
T ss_dssp SEEE
T ss_pred ceee
Confidence 7653
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=90.53 E-value=1.8 Score=37.23 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++....+. .+|.+...+++ +.+.+.... ..+++.++-+... .+ ....+.|
T Consensus 26 ~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~G 98 (292)
T d1xkya1 26 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALY----RHVVSVVDK---RVPVIAGTGSNNTHASIDLTKKATEVG 98 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHH----HHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHH----HHHHHHhCC---CceEEEecCcccHHHHHHHHHHHHHcC
Confidence 334555567899999998776664 79998877754 334444433 4688887765543 23 4456788
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|.+.+
T Consensus 99 ad~ilv 104 (292)
T d1xkya1 99 VDAVML 104 (292)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887754
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=90.40 E-value=4.6 Score=34.33 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGV 301 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~ 301 (386)
..++.++.+++.|||.|-|+- |.+..+|++.=.+-+.|.++.+ ++. ++++ =++-... ......+.|+
T Consensus 27 ~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l----~~~--~~~i--SIDT~~~eVa~~al~~Ga 98 (264)
T d1ad1a_ 27 SAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAI----VGF--DVKI--SVDTFRSEVAEACLKLGV 98 (264)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHH----TTS--SSEE--EEECSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhh----ccc--Cccc--chhhhhHHHHHHHHhcCC
Confidence 344556678899999999875 2335899876656667775543 443 3443 3332233 3577788999
Q ss_pred CEEE-cC-CC--CCHHHHHHHhCCCeeEEecCCcCcc--CCCHHHHHHHHHHHHHHc---C--CCCeEEecCCCCCCCCc
Q 016596 302 DVVS-LD-WT--VDMAEGRRRLGPDVAVQGNVDPGAL--FGSKDFITNRINDTVRKA---G--RWKHILNLGHGIKVGTP 370 (386)
Q Consensus 302 d~l~-~d-~~--~dl~e~~~~~g~~~~l~G~vd~~~l--~gt~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~~~tp 370 (386)
+++| +. .. ..+.++...++-.+++|=. +... ....++|.+...+.++.+ | ....|+-||=|.. .++
T Consensus 99 ~iINDVs~g~~d~~~~~~va~~~~~~ilmH~--~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFg-Kt~ 175 (264)
T d1ad1a_ 99 DIINDQWAGLYDHRMFQVVAKYDAEIVLMHN--GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFA-KTR 175 (264)
T ss_dssp CEEEETTTTSSCTHHHHHHHHTTCEEEEECC--CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS-CCH
T ss_pred cEeeccccccccccHHHHHhhcCcceeeeee--ccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCcc-ccc
Confidence 9997 53 22 4577788888776777642 2222 233466766666655443 3 3689999999874 778
Q ss_pred HHHHHHHH
Q 016596 371 EENVAHFF 378 (386)
Q Consensus 371 ~Eni~a~~ 378 (386)
.+|+.-+-
T Consensus 176 ~~n~~ll~ 183 (264)
T d1ad1a_ 176 NEEAEVMA 183 (264)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 88886554
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=90.38 E-value=2.3 Score=36.63 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=44.8
Q ss_pred HHHHHHHh-CCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH---HHHhcCCC
Q 016596 231 YVQYQADN-GAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLE---RLALTGVD 302 (386)
Q Consensus 231 ~~~~~~e~-G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~---~l~e~g~d 302 (386)
+++.+++. |++++++..+.+. .+|.+..++++. ...+..+. .+|++.|+.+... .++ ...+.|+|
T Consensus 29 ~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~----~~~~~~~~---~~~vi~gv~~~s~~~~iela~~a~~~Gad 101 (293)
T d1f74a_ 29 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR----IAKDEAKD---QIALIAQVGSVNLKEAVELGKYATELGYD 101 (293)
T ss_dssp HHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhh----eeeccccC---ccccccccccccHHHHHHHHHHHHHcCCC
Confidence 33445665 9999998766654 799999887654 34455543 5788888876653 233 34466877
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 102 ~i~~ 105 (293)
T d1f74a_ 102 CLSA 105 (293)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 7644
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=89.60 E-value=2.1 Score=34.92 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcchHHHHHhcCCCEEEcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGLLERLALTGVDVVSLDWT 309 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~l~~l~e~g~d~l~~d~~ 309 (386)
+.++..+++|++.|++-+.. .|.+.+.+++ +++.+..+++ +.+.++|. .++...+++++++|+...
T Consensus 21 ~~v~~~l~~Gv~~vqlR~k~---~~~~e~~~~a----~~l~~i~~~~--~~~liind-----~~~lA~~~~adGvHl~~~ 86 (206)
T d1xi3a_ 21 ESVREALEGGATAIQMRIKN---APTREMYEIG----KTLRQLTREY--DALFFVDD-----RVDVALAVDADGVQLGPE 86 (206)
T ss_dssp HHHHHHHHTTCSEEEECCCS---CCHHHHHHHH----HHHHHHHHHT--TCEEEEES-----CHHHHHHHTCSEEEECTT
T ss_pred HHHHHHHHcCCCEEEEcCCC---CCHHHHHHHH----HHHHHHHHHc--CCeEEech-----hHHHHHhccCceEeeccc
Confidence 44566789999999875543 5566665544 4555666654 46766652 356677889999998654
Q ss_pred -CCHHHHHHHhCCCeeE
Q 016596 310 -VDMAEGRRRLGPDVAV 325 (386)
Q Consensus 310 -~dl~e~~~~~g~~~~l 325 (386)
.+. ..++.++.+..+
T Consensus 87 ~~~~-~~~~~~~~~~ii 102 (206)
T d1xi3a_ 87 DMPI-EVAKEIAPNLII 102 (206)
T ss_dssp SCCH-HHHHHHCTTSEE
T ss_pred cccH-hhhhhccccccc
Confidence 344 445555655443
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.11 E-value=5.9 Score=33.71 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGV 301 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~ 301 (386)
..++.++.+++.|||.|-|+- |.+..+|++.=.+-+.|.++ .+++. +.++. ++-... ......+.|+
T Consensus 26 ~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~----~~~~~--~~~iS--IDT~~~~Va~~al~~Ga 97 (270)
T d1eyea_ 26 DAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVK----ELAAQ--GITVS--IDTMRADVARAALQNGA 97 (270)
T ss_dssp HHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHH----HHHHT--TCCEE--EECSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceee----eeccc--ceeec--hHhhhHHHHHHHHhcCC
Confidence 344556678899999998875 23347888665566667654 44444 34433 332233 3577788999
Q ss_pred CEEE-cCC---CCCHHHHHHHhCCCeeEEecC--CcCcc-----C-CCHHHHHHHHHHHHHHc---C--CCCeEEecCCC
Q 016596 302 DVVS-LDW---TVDMAEGRRRLGPDVAVQGNV--DPGAL-----F-GSKDFITNRINDTVRKA---G--RWKHILNLGHG 364 (386)
Q Consensus 302 d~l~-~d~---~~dl~e~~~~~g~~~~l~G~v--d~~~l-----~-gt~eev~~~v~~~i~~~---~--~~g~Ils~gc~ 364 (386)
+++| +.. ...+.++....+-.+++|=+- ++... + .-.+++.....+.++.+ | ..+.|+-||-|
T Consensus 98 ~iINDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiG 177 (270)
T d1eyea_ 98 QMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLG 177 (270)
T ss_dssp CEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred eEEEeccccccchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEEccccc
Confidence 9997 532 245888888888777776433 22221 1 22455555555444432 3 36799999999
Q ss_pred CCCCCcHHHHHHHH
Q 016596 365 IKVGTPEENVAHFF 378 (386)
Q Consensus 365 i~~~tp~Eni~a~~ 378 (386)
.. -++.+|+.-+-
T Consensus 178 Fg-Kt~~~n~~lL~ 190 (270)
T d1eyea_ 178 FA-KTAQHNWAILH 190 (270)
T ss_dssp SS-CCHHHHHHHHH
T ss_pred cC-cccchHHHHHH
Confidence 85 66777875543
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.38 E-value=5.7 Score=34.27 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcHH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAPF 188 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gPf 188 (386)
+|+..+.+++++..++.|..+-...++++|.
T Consensus 68 eRv~~~~~a~~~a~~~tG~~~~Ya~Nit~~~ 98 (291)
T d2d69a1 68 ERVRKLYRVRDRVEAETGETKEYLINITGPV 98 (291)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCEEECBCCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCeeEEEEeccCCH
Confidence 4778888999999999988776666777763
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=88.12 E-value=4.9 Score=34.34 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEec----CCc-c--hHHHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYAS----GSG-G--LLERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~c----G~~-~--~l~~l~e~g~d 302 (386)
+.++...++|+|++.+.-|.-...|.+. +.-|++++.++. +.|++++.. |.. . .+..+.+.+ +
T Consensus 87 ~~~~~a~~~Gad~~~~~pP~~~~~~~~~----i~~~f~~v~~~~-----~~pi~iYn~P~~~g~~~~~e~~~~L~~~p-n 156 (292)
T d2a6na1 87 SLTQRFNDSGIVGCLTVTPYYNRPSQEG----LYQHFKAIAEHT-----DLPQILYNVPSATGCDLLPETVGRLAKVK-N 156 (292)
T ss_dssp HHHHTTTTSSCCEEEEECCCSSCCCHHH----HHHHHHHHHHTC-----SSCEEEEECHHHHSCCCCHHHHHHHHTST-T
T ss_pred HHhccHHhcCCcceeccCCCCCCCCHHH----HHHHHHHHhhcc-----CCcEEEEEeccccCCccCHHHHHHHhcCC-C
Confidence 3345556789999988777655566543 455788888776 468887764 322 2 245566664 5
Q ss_pred EEEc-CCCC---CHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCcHHHHHHHH
Q 016596 303 VVSL-DWTV---DMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNRINDTVRKAGRWKHILNLGHGIKVGTPEENVAHFF 378 (386)
Q Consensus 303 ~l~~-d~~~---dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i~~~tp~Eni~a~~ 378 (386)
++.+ +... .....++..+++..++++-+...+ ..+. .|..|++-+.++- -|+-++.++
T Consensus 157 v~giK~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------~~~~-~G~~G~i~~~~~~-----~p~~~~~i~ 218 (292)
T d2a6na1 157 IIGIKEATGNLTRVNQIKELVSDDFVLLSGDDASAL------------DFMQ-LGGHGVISVTANV-----AARDMAQMC 218 (292)
T ss_dssp EEEEEECSCCTTHHHHHHTTSCTTSEEEECCGGGHH------------HHHH-TTCCEEEESGGGT-----CHHHHHHHH
T ss_pred EEEEEeccCcchhhhhhhhhcCCccEEeecchhhhh------------hHhh-CCceEEEeecchh-----hhhchhhhh
Confidence 5554 2222 344555566666666655443221 1222 2445676665543 356677777
Q ss_pred HHHHh
Q 016596 379 EVAKA 383 (386)
Q Consensus 379 ~a~~~ 383 (386)
+++++
T Consensus 219 ~~~~~ 223 (292)
T d2a6na1 219 KLAAE 223 (292)
T ss_dssp HHHHT
T ss_pred hHhhc
Confidence 76654
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=87.59 E-value=1.2 Score=37.76 Aligned_cols=87 Identities=21% Similarity=0.160 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--------hHHHHH
Q 016596 226 TSMAKYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--------LLERLA 297 (386)
Q Consensus 226 ~~~~~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--------~l~~l~ 297 (386)
+-..+|++.+.+.|...||.+ +.+|+.-++-+...++++++.+++. |..+++-+-.+.- .++.+.
T Consensus 17 e~~~~yi~~a~~~Gf~~iFTS-----L~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DIsp~~l~~lg~s~~dl~~~~ 89 (244)
T d1x7fa2 17 EKDMAYISAAARHGFSRIFTC-----LLSVNRPKEEIVAEFKEIINHAKDN--NMEVILDVAPAVFDQLGISYSDLSFFA 89 (244)
T ss_dssp HHHHHHHHHHHTTTEEEEEEE-----ECCC--------HHHHHHHHHHHHT--TCEEEEEECTTCC------CCCTHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEec-----CccCCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcCHHHHHHhCCCHHHHHHHH
Confidence 445678888889999988753 4566666777788899999999998 5788888777542 257889
Q ss_pred hcCCCEEEcCCCCCHHHHHHHh
Q 016596 298 LTGVDVVSLDWTVDMAEGRRRL 319 (386)
Q Consensus 298 e~g~d~l~~d~~~dl~e~~~~~ 319 (386)
++|++++-+|...|..+..+..
T Consensus 90 ~lGi~glRlD~Gf~~~e~a~ms 111 (244)
T d1x7fa2 90 ELGADGIRLDVGFDGLTEAKMT 111 (244)
T ss_dssp HHTCSEEEESSCCSSHHHHHHT
T ss_pred HCCCCEEEEcCCCChHHHHHHh
Confidence 9999999999888877766653
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=87.59 E-value=7.7 Score=33.21 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhCCCEEEEec----CCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc-hHHHHHhcCC
Q 016596 227 SMAKYVQYQADNGAQAVQIFD----SWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG-LLERLALTGV 301 (386)
Q Consensus 227 ~~~~~~~~~~e~G~d~i~i~d----~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~-~l~~l~e~g~ 301 (386)
..++.++.+++.|||.|-|+- |.+..+|++.=.+-+.|.++.+-+.. +. .+=++-... ....-.+.|+
T Consensus 39 ~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~-----~~--~iSIDT~~~eVa~~al~~Ga 111 (282)
T d1ajza_ 39 DAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-----EV--WISVDTSKPEVIRESAKVGA 111 (282)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-----CC--EEEEECCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcc-----cc--eEEEEecChHHHHHHHhcCc
Confidence 344566778899999999875 33458999887777888877764322 23 333333333 3677789999
Q ss_pred CEEEc-CC--CCCHHHHHHHhCCCeeEEecC-CcCcc-----CCC-HHHHHHHHHHHHHHc---C--CCCeEEecCCCCC
Q 016596 302 DVVSL-DW--TVDMAEGRRRLGPDVAVQGNV-DPGAL-----FGS-KDFITNRINDTVRKA---G--RWKHILNLGHGIK 366 (386)
Q Consensus 302 d~l~~-d~--~~dl~e~~~~~g~~~~l~G~v-d~~~l-----~gt-~eev~~~v~~~i~~~---~--~~g~Ils~gc~i~ 366 (386)
+++|= .. ...+.++....+-.+++|=.- +|..+ +.+ .++|.+...+.++.+ | ....|+-||-|..
T Consensus 112 ~iINDvsg~~~~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFg 191 (282)
T d1ajza_ 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp CEECCTTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred eEEechhhcccchhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcC
Confidence 99963 21 134556666677666775211 23222 222 366666666665554 3 3689999999986
Q ss_pred CCCcHHHHHHH
Q 016596 367 VGTPEENVAHF 377 (386)
Q Consensus 367 ~~tp~Eni~a~ 377 (386)
-++.+|+.-+
T Consensus 192 -K~~~~n~~ll 201 (282)
T d1ajza_ 192 -KNLSHNYSLL 201 (282)
T ss_dssp -CCHHHHHHHH
T ss_pred -CChhhhHHHH
Confidence 4578888644
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=86.99 E-value=1.7 Score=37.50 Aligned_cols=83 Identities=24% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcch-H-HHH--HhcCCCEEE
Q 016596 230 KYVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGGL-L-ERL--ALTGVDVVS 305 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~~-l-~~l--~e~g~d~l~ 305 (386)
+.++.+.++|++.|.++|+.| .+.|+...+++ +.+.+.+. +++++-+|.+-+... + ..+ .+.|++.++
T Consensus 165 ~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~li----~~l~~~~~---~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~id 236 (303)
T d1rqba2 165 KLAGQLLDMGADSIALKDMAA-LLKPQPAYDII----KAIKDTYG---QKTQINLHCHSTTGVTEVSLMKAIEAGVDVVD 236 (303)
T ss_dssp HHHHHHHHTTCSEEEEEETTC-CCCHHHHHHHH----HHHHHHHC---TTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhcCCcEEeecCccc-hhhhHHHHHHH----HHHHhhcC---CcccceeccCchHHHHHHHHHHHHHcCCCEEE
Confidence 345567789999999999885 57888776654 33333332 356888999988753 3 333 467999885
Q ss_pred c-----CC---CCCHHHHHHHhC
Q 016596 306 L-----DW---TVDMAEGRRRLG 320 (386)
Q Consensus 306 ~-----d~---~~dl~e~~~~~g 320 (386)
- .. ..+++++...+.
T Consensus 237 ~ti~GlG~~~GN~~te~lv~~L~ 259 (303)
T d1rqba2 237 TAISSMSLGPGHNPTESVAEMLE 259 (303)
T ss_dssp EBCGGGCSTTSBCBHHHHHHHTT
T ss_pred ECCccCCCCCCCccHHHHHHHHH
Confidence 3 22 246676666664
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=85.57 E-value=5.2 Score=34.14 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hHHHH---HhcCC
Q 016596 229 AKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LLERL---ALTGV 301 (386)
Q Consensus 229 ~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~~l---~e~g~ 301 (386)
.+.++.+++.|+++++++.+.+. .+|.+...+++. ..++..+. .++++.|+.+..+ .++.. .+.|+
T Consensus 25 ~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~----~~~~~~~~---~~~vi~g~~~~s~~~~i~~~~~a~~~Ga 97 (292)
T d2a6na1 25 KKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVM----MTLDLADG---RIPVIAGTGANATAEAISLTQRFNDSGI 97 (292)
T ss_dssp HHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSSHHHHHHHHHTTTTSSC
T ss_pred HHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhh----hhhhhccc---cceeEeecccchHHHHHHHhccHHhcCC
Confidence 34445567889999999877764 699988776543 45555543 4788888876654 24433 35688
Q ss_pred CEEE
Q 016596 302 DVVS 305 (386)
Q Consensus 302 d~l~ 305 (386)
+.+-
T Consensus 98 d~~~ 101 (292)
T d2a6na1 98 VGCL 101 (292)
T ss_dssp CEEE
T ss_pred ccee
Confidence 8663
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=85.36 E-value=2 Score=36.86 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCCcEEEEecCCcch-H-H--HHHhcCCCEEE
Q 016596 231 YVQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQTH-PDLSLILYASGSGGL-L-E--RLALTGVDVVS 305 (386)
Q Consensus 231 ~~~~~~e~G~d~i~i~d~~~~~iSp~~f~ef~~P~~k~l~~~i~~~~-~~~~~~~H~cG~~~~-l-~--~l~e~g~d~l~ 305 (386)
.++.+.++|++.|.++|+.+. +.|+...++ ++.+++.. ++.++-+|.+-+... + . .-.+.|++.++
T Consensus 153 ~~~~~~~~g~~~I~l~DT~G~-~~P~~v~~~--------v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id 223 (289)
T d1nvma2 153 QGKLMESYGATCIYMADSGGA-MSMNDIRDR--------MRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVD 223 (289)
T ss_dssp HHHHHHHHTCSEEEEECTTCC-CCHHHHHHH--------HHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred HHHhhccccceeeeecchhhc-ccchhHHHH--------HHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEee
Confidence 445566789999999998876 567665544 44444432 346788999987652 3 2 23478999884
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=84.50 E-value=6.1 Score=33.46 Aligned_cols=97 Identities=14% Similarity=0.016 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhCCCCcEEEEecCCcc---hHHHHHhcCCC----EE-EcCCCCCHHHHHHHhCCCeeEEecCCcC-cc-
Q 016596 265 YLKQIVDTVKQTHPDLSLILYASGSGG---LLERLALTGVD----VV-SLDWTVDMAEGRRRLGPDVAVQGNVDPG-AL- 334 (386)
Q Consensus 265 ~~k~l~~~i~~~~~~~~~~~H~cG~~~---~l~~l~e~g~d----~l-~~d~~~dl~e~~~~~g~~~~l~G~vd~~-~l- 334 (386)
.+++.++..++. +.|+++|+-.... .++.+.+.|++ ++ +.+...+++.+++.+.-..-+ +++.. ..
T Consensus 139 ~f~~~~~~A~~~--~lPv~iH~r~~~~~~e~~~~l~~~~~~~~~~~~~H~~f~~~~e~~~~~~~~G~~i--~~~g~~~~~ 214 (291)
T d1bf6a_ 139 VFIAAALAHNQT--GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYV--QFDTIGKNS 214 (291)
T ss_dssp HHHHHHHHHHHH--CCCEEEECGGGCSHHHHHHHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEE--EECCTTCTT
T ss_pred HHHHHHHHHHHh--CCCeEEeccchhhhHHHHHHHHHhCCCcccceecccCCCCCHHHHHHHHhcCeeE--Eeccccccc
Confidence 567788888887 6899999754332 36777777765 22 445567888888875332111 12221 12
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCC
Q 016596 335 FGSKDFITNRINDTVRKAGRWKHILNLGHGI 365 (386)
Q Consensus 335 ~gt~eev~~~v~~~i~~~~~~g~Ils~gc~i 365 (386)
..+.++..+.++++++.+...+.++++++..
T Consensus 215 ~~~~~~~~~~~~~lv~~~p~drilleTD~p~ 245 (291)
T d1bf6a_ 215 YYPDEKRIAMLHALRDRGLLNRVMLSMDITR 245 (291)
T ss_dssp TSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred CCcHHHhHHHHHHHHHhCCchhEEEecCCCC
Confidence 4556677788889998876568999998763
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=83.93 E-value=8.9 Score=32.51 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcC
Q 016596 228 MAKYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTG 300 (386)
Q Consensus 228 ~~~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g 300 (386)
+.++++.+++.|++++++..+.+. .||.+...+.+ +..++.... .+|++.++-+..+ .+ ....+.|
T Consensus 24 ~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~~~vi~gv~~~st~~ai~~a~~A~~~G 96 (295)
T d1o5ka_ 24 YERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLV----SRTLEIVDG---KIPVIVGAGTNSTEKTLKLVKQAEKLG 96 (295)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHH----HHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHh----hhhcccccc---CCceEeecccccHHHHHHHHHHHHHcC
Confidence 344555677899999998877664 79999877644 344555542 4687777654443 13 4445678
Q ss_pred CCEEEc
Q 016596 301 VDVVSL 306 (386)
Q Consensus 301 ~d~l~~ 306 (386)
+|++.+
T Consensus 97 ad~v~v 102 (295)
T d1o5ka_ 97 ANGVLV 102 (295)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887644
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.54 E-value=3.6 Score=35.39 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCCcEEEEecCCcc--hH---HHHHhcCCC
Q 016596 230 KYVQYQADNGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDTVKQTHPDLSLILYASGSGG--LL---ERLALTGVD 302 (386)
Q Consensus 230 ~~~~~~~e~G~d~i~i~d~~~~--~iSp~~f~ef~~P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l---~~l~e~g~d 302 (386)
++++.+++.|+++++++...+. .+|.+..++.+. .+++..+. .+|++.++.+... .+ ....+.|+|
T Consensus 32 ~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~----~~~~~~~~---~~~vi~g~~~~s~~~~i~~a~~a~~~Gad 104 (296)
T d1xxxa1 32 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLR----AVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAEGAH 104 (296)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHH----HHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHH----HHHHHhcc---ccceEeccccchhHHHHHHHHHHHHhcCC
Confidence 4444567899999998776654 699988776543 33444543 4677777766543 23 444577998
Q ss_pred EEEc
Q 016596 303 VVSL 306 (386)
Q Consensus 303 ~l~~ 306 (386)
++.+
T Consensus 105 ~v~i 108 (296)
T d1xxxa1 105 GLLV 108 (296)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7643
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=82.14 E-value=13 Score=31.72 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHHHhCCceeEEeecCcH
Q 016596 158 ESVPYVGKALTILREEVNNEAAVLGFVGAP 187 (386)
Q Consensus 158 ~~~~~~~ea~~~l~~~~g~~~~v~~~~~gP 187 (386)
+|++.+.+++++..++.|..+-...+++++
T Consensus 68 eRv~~~~~a~~~a~~~TG~~~lya~NiT~~ 97 (283)
T d1ykwa1 68 ERAAHLGKARRKAEAETGEPKIYLANITDE 97 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhCCeeEEeeecCCC
Confidence 467888999999999998876666677665
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=82.09 E-value=3.9 Score=33.13 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=80.7
Q ss_pred HHHHHHHhCCCEEE-Eec-CCcCCCCHHHHHHhhH------------HHHHHHHHHHHhhCCCCcEEEEecCCcc--hHH
Q 016596 231 YVQYQADNGAQAVQ-IFD-SWATELSPVDFEEFSL------------PYLKQIVDTVKQTHPDLSLILYASGSGG--LLE 294 (386)
Q Consensus 231 ~~~~~~e~G~d~i~-i~d-~~~~~iSp~~f~ef~~------------P~~k~l~~~i~~~~~~~~~~~H~cG~~~--~l~ 294 (386)
-++...++|||.+- ++. .+.-.+|++..++... +...++.+.++.. + +-++..+|+.+ .+.
T Consensus 13 d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~~~~V~Vfv~~~~~~i~~~~~~~--~-~d~iQlHG~e~~~~~~ 89 (198)
T d1piia1 13 DAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVL--S-LAAVQLHGNEEQLYID 89 (198)
T ss_dssp HHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHHHHHHH--T-CSEEEECSCCCHHHHH
T ss_pred HHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcccccceeeeccchhhHHHhhhcc--c-ccceeecCCccHHHHH
Confidence 45566788999763 333 3445899999988743 2344556666654 2 33667777754 345
Q ss_pred HHHhc-CC----------------------CEEEcCC-------CCCHHHHHHHhCCCeeEEecCCcCccCCCHHHHHHH
Q 016596 295 RLALT-GV----------------------DVVSLDW-------TVDMAEGRRRLGPDVAVQGNVDPGALFGSKDFITNR 344 (386)
Q Consensus 295 ~l~e~-g~----------------------d~l~~d~-------~~dl~e~~~~~g~~~~l~G~vd~~~l~gt~eev~~~ 344 (386)
.+.+. +. +.+-+|. ..|..-++..-.....|.||++| +.|.+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~~~~~~~~~LAGGl~~-------~Nv~~- 161 (198)
T d1piia1 90 TLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGA-------DNCVE- 161 (198)
T ss_dssp HHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGTTSCCTTEEEESSCCT-------TTHHH-
T ss_pred HHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhcccccceeEEecCCCH-------HHHHH-
Confidence 55432 11 1111111 02333333333334666777765 44433
Q ss_pred HHHHHHHcCCCCeEEecCCCCCCCC-cHHHHHHHHHHHHhh
Q 016596 345 INDTVRKAGRWKHILNLGHGIKVGT-PEENVAHFFEVAKAI 384 (386)
Q Consensus 345 v~~~i~~~~~~g~Ils~gc~i~~~t-p~Eni~a~~~a~~~y 384 (386)
+++ .+..|.=+++|-+..|+. .++.|+++++++|.|
T Consensus 162 ---a~~-~~p~gvDvsSGvE~~pG~KD~~ki~~f~~~vr~~ 198 (198)
T d1piia1 162 ---AAQ-TGCAGLDFNSAVESQPGIKDARLLASVFQTLRAY 198 (198)
T ss_dssp ---HHT-TCCSEEEECGGGEEETTEECHHHHHHHHHHHHCC
T ss_pred ---HHh-cCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhcC
Confidence 333 344467788887766665 899999999999987
|