Citrus Sinensis ID: 016598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MESVSSSVLNKPLPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVHNLQQ
cccccccccccccccccccHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEEccccccccccccEEEEEEEEEcccccEEEEEcccHHHHHHccccccEEEEEEEcccccccccEEEEEEEEEEcccccHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccc
cccccccccccccccccHHHccccccccccEEEEcccccccccccEEHHHHHcccccccccccccccccccccHHHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccEEEEcHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEEEcccHHHHHHHHHHHHHcccccEccccccEEEEEEEcEEEEEEccccEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccc
mesvsssvlnkplpspsysfakssnqrtgslkfseSSRCAALGLRLRIHAQarevpnegeddkpsdngigsaFGDAVslsqgntnqnpsgdkdadnllkietphvvphgsgtsggtraglfrtpisggvqsatsahglprpaLAVRNLMEQARFAHLCTVMSrmhhrregypfgslvdfapdsmghpifsfsplaihtrnlladprctlvvqipgwsglsnarvtifgdifplpehqqeWAHKQYIAkhhqgpsqqwgnfyYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGaqfniqrvtfedghtvETLEEAKTALGKvikkgkvhnlqq
mesvsssvlnkplpspsysfakssnqrtgslkfSESSRCAALGLRLRIHAQarevpnegeddkpsdNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPhvvphgsgtsggTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIIsldskgidVRVRQGAqfniqrvtfedghtveTLEEAktalgkvikkgkvhnlqq
MESVSSSVLNKPLPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVHNLQQ
****************************************ALGLRLRI********************************************************************************************PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVI**********
********************A*SSNQRT*******************************************************************************************************************AVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKK*K******
***********PLPSPSY******************SRCAALGLRLRIHAQARE**********SDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVHNLQQ
**************SPSYSFA**S***TGSLKFSESSRCAALGLRLRIHAQAREV*********SDNGIGSAFGDAVSL************************************************GVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVHNL**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESVSSSVLNKPLPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPNEGEDDKPSDNGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYxxxxxxxxxxxxxxxxxxxxxVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVHNLQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
255555606397 conserved hypothetical protein [Ricinus 0.935 0.909 0.795 1e-170
224109984342 predicted protein [Populus trichocarpa] 0.883 0.997 0.807 1e-164
224100515415 predicted protein [Populus trichocarpa] 0.968 0.901 0.715 1e-162
225443347396 PREDICTED: uncharacterized protein LOC10 0.930 0.906 0.771 1e-161
225443345389 PREDICTED: uncharacterized protein LOC10 0.914 0.907 0.757 1e-157
297852884391 FMN binding protein [Arabidopsis lyrata 0.937 0.925 0.728 1e-153
449447992380 PREDICTED: uncharacterized protein LOC10 0.968 0.984 0.701 1e-153
15217955392 Pyridoxamine 5'-phosphate oxidase-like p 0.937 0.923 0.715 1e-151
18377805392 unknown protein [Arabidopsis thaliana] 0.937 0.923 0.712 1e-151
356523451 531 PREDICTED: uncharacterized protein LOC10 0.870 0.632 0.758 1e-147
>gi|255555606|ref|XP_002518839.1| conserved hypothetical protein [Ricinus communis] gi|223542012|gb|EEF43557.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/366 (79%), Positives = 320/366 (87%), Gaps = 5/366 (1%)

Query: 22  KSSNQRTGSLKFSESSRCAALGLRLRIHAQAREVPN-EGEDDKPSDNGIGSAFGDAVSLS 80
           K  N+R GSLKF+E++    L    R H  A EV   EGED++P +NG G    D +S S
Sbjct: 36  KILNKRIGSLKFAETAGFHGL----RAHCLAHEVSGGEGEDERPLNNGFGLVSDDTLSFS 91

Query: 81  QGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPISGGVQSATSAHGLPR 140
           QGN  +N S  KDA+ ++K+ETP VVPHGS T GGTRAGLFRTPISGGVQSATSAHGLPR
Sbjct: 92  QGNIKRNESSKKDAEKIIKVETPLVVPHGSSTGGGTRAGLFRTPISGGVQSATSAHGLPR 151

Query: 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRN 200
           PALAVRNLMEQARFAHLCT+MSRMHHRREGYPFGSLVDFAPDS+GHPIFSFSPLAIHTRN
Sbjct: 152 PALAVRNLMEQARFAHLCTIMSRMHHRREGYPFGSLVDFAPDSVGHPIFSFSPLAIHTRN 211

Query: 201 LLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNF 260
           LLADPRCTLVVQIPGWSGLSNARVTIFGD+FPLPE QQEWAHKQYIAKH QGPSQQWGNF
Sbjct: 212 LLADPRCTLVVQIPGWSGLSNARVTIFGDVFPLPEDQQEWAHKQYIAKHQQGPSQQWGNF 271

Query: 261 YYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELL 320
           YYFRMQ+ISDIYFIGGFGTVAWVDVKEYEAL PDKIAV+G EH LKELNA FSK LKELL
Sbjct: 272 YYFRMQNISDIYFIGGFGTVAWVDVKEYEALQPDKIAVDGEEHNLKELNAIFSKPLKELL 331

Query: 321 SAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGK 380
           S ETEVDDAA+IS+DSKG D+RVRQGAQFN+QR++FE+GH VETLEEAK+AL K+IKKG+
Sbjct: 332 STETEVDDAALISIDSKGTDIRVRQGAQFNVQRLSFEEGHAVETLEEAKSALWKLIKKGQ 391

Query: 381 VHNLQQ 386
           VHNLQ+
Sbjct: 392 VHNLQK 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109984|ref|XP_002315376.1| predicted protein [Populus trichocarpa] gi|222864416|gb|EEF01547.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100515|ref|XP_002311906.1| predicted protein [Populus trichocarpa] gi|222851726|gb|EEE89273.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443347|ref|XP_002264902.1| PREDICTED: uncharacterized protein LOC100253108 isoform 1 [Vitis vinifera] gi|297735773|emb|CBI18460.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443345|ref|XP_002264942.1| PREDICTED: uncharacterized protein LOC100253108 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297852884|ref|XP_002894323.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] gi|297340165|gb|EFH70582.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449447992|ref|XP_004141750.1| PREDICTED: uncharacterized protein LOC101216483 [Cucumis sativus] gi|449491787|ref|XP_004159003.1| PREDICTED: uncharacterized protein LOC101229143 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15217955|ref|NP_175567.1| Pyridoxamine 5'-phosphate oxidase-like protein [Arabidopsis thaliana] gi|12325371|gb|AAG52630.1|AC024261_17 unknown protein; 18888-20847 [Arabidopsis thaliana] gi|23297513|gb|AAN12985.1| unknown protein [Arabidopsis thaliana] gi|332194562|gb|AEE32683.1| Pyridoxamine 5'-phosphate oxidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18377805|gb|AAL67052.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356523451|ref|XP_003530352.1| PREDICTED: uncharacterized protein LOC100775527 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2017637392 AT1G51560 [Arabidopsis thalian 0.945 0.931 0.713 3.5e-139
TAIR|locus:2093005387 AT3G21140 [Arabidopsis thalian 0.955 0.953 0.686 1.2e-131
TAIR|locus:2079394321 AT3G03890 [Arabidopsis thalian 0.562 0.676 0.293 5.7e-21
UNIPROTKB|Q60C03238 MCA0309 "Putative uncharacteri 0.523 0.848 0.254 7.4e-14
TIGR_CMR|SPO_0465160 SPO_0465 "pyridoxamine 5'-phos 0.272 0.656 0.309 8.1e-05
TAIR|locus:2017637 AT1G51560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
 Identities = 271/380 (71%), Positives = 305/380 (80%)

Query:    10 NKP-LPSPSYSFAKSSNQRTGSLKFSESSRCAALGLRLRIHA--QAREVPNEGEDDKPSD 66
             N P L S S     S  ++   L+  E S     GL LR+HA     E  +E ED     
Sbjct:    25 NPPALSSSSCWLCNSQAKQIIKLRIREGSN---QGL-LRVHALFNNEEASSESEDK---- 76

Query:    67 NGIGSAFGDAVSLSQGNTNQNPSGDKDADNLLKIETPHVVPHGSGTSGGTRAGLFRTPIS 126
             NG G    D  SL Q     N SG+KD++N++ +ET   VPHG    GGTRAGLFRTPIS
Sbjct:    77 NGFGLLPADIFSLPQEKFGSNVSGEKDSENIIDVETSLAVPHG----GGTRAGLFRTPIS 132

Query:   127 GGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGH 186
             GGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMS+MHHRREGYPFGSLVDFAPD MGH
Sbjct:   133 GGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSKMHHRREGYPFGSLVDFAPDPMGH 192

Query:   187 PIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDIFPLPEHQQEWAHKQYI 246
             PIFSFSPLAIHTRN+LA+PRCTLVVQIPGWS LSNARVT+FGD++PLPE QQEWAHKQY+
Sbjct:   193 PIFSFSPLAIHTRNILAEPRCTLVVQIPGWSCLSNARVTLFGDVYPLPEEQQEWAHKQYM 252

Query:   247 AKHHQGPSQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLK 306
              KHHQGPSQQWGNF+YFRMQ+ISDIYFIGGFGTVAW++V EYE L PDKIAV+GGE  LK
Sbjct:   253 LKHHQGPSQQWGNFHYFRMQNISDIYFIGGFGTVAWINVNEYETLQPDKIAVDGGEQNLK 312

Query:   307 ELNAAFSKLLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLE 366
             ELNA FSK L+ELLS+E E+DDAAIIS+DSKGID+RVRQGAQF IQR+ FE+ H VETLE
Sbjct:   313 ELNAIFSKPLRELLSSEAELDDAAIISIDSKGIDIRVRQGAQFKIQRLAFEESHGVETLE 372

Query:   367 EAKTALGKVIKKGKVHNLQQ 386
             EAK+AL KVI+KGK+HNLQ+
Sbjct:   373 EAKSALWKVIEKGKLHNLQK 392
GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2093005 AT3G21140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079394 AT3G03890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q60C03 MCA0309 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0465 SPO_0465 "pyridoxamine 5'-phosphate oxidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 1e-23
pfam0124388 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph 5e-06
COG0748245 COG0748, HugZ, Putative heme iron utilization prot 2e-05
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score = 95.7 bits (239), Expect = 1e-23
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 23/167 (13%)

Query: 141 PALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLV---DFAP-DSMGHPIFSFSPLAI 196
             +A R L+ +A +  L T+ +  H    G PFG++V   D  P DS G+P F  + L  
Sbjct: 7   AKVA-RTLVHRADWGALSTIST--HKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTDLDS 63

Query: 197 HTRNLLADPRCTLVVQIPG----------WSGLSNARVTIFGDIFPLPEHQQEWAHKQYI 246
             +NL  +PR +L +                  +  R+T+ G +  +P  ++++A K + 
Sbjct: 64  TVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLKKVPSEERDFAKKAFF 123

Query: 247 AKHHQGPSQQW---GNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEA 290
           ++H    ++ W    NF+++++ +I +IY +GGFG  A++  +EY  
Sbjct: 124 SRHPD--AKDWLPGHNFHFYKL-EIENIYLLGGFGGAAYITAEEYYK 167

Length = 167
>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information
>gnl|CDD|223819 COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 100.0
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.85
KOG3374210 consensus Cellular repressor of transcription [Tra 99.82
PF1061583 DUF2470: Protein of unknown function (DUF2470); In 99.7
PRK03467144 hypothetical protein; Provisional 99.56
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.3
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.22
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.09
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.08
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.07
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 98.83
COG3787145 Uncharacterized protein conserved in bacteria [Fun 98.72
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 98.61
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 98.6
COG0748245 HugZ Putative heme iron utilization protein [Inorg 98.46
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.15
COG3871145 Uncharacterized stress protein (general stress pro 98.09
PRK06733151 hypothetical protein; Provisional 97.92
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 97.63
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 97.59
COG5015132 Uncharacterized conserved protein [Function unknow 97.3
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.05
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 96.85
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 96.52
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 96.51
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 95.67
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 91.39
COG2808209 PaiB Transcriptional regulator [Transcription] 89.65
COG3576173 Predicted flavin-nucleotide-binding protein struct 82.72
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=100.00  E-value=2.5e-34  Score=261.09  Aligned_cols=150  Identities=38%  Similarity=0.727  Sum_probs=115.7

Q ss_pred             CCChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeee----eCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEc
Q 016598          138 LPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFA----PDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQI  213 (386)
Q Consensus       138 ~p~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya----~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~  213 (386)
                      ....|+.||+|++.+++|+|+|+++.  ++.+|+||+++++|+    .+.+|+|+|++++++.|++||++||||||+|.+
T Consensus         3 ~~~aA~~AR~Ll~~~~~g~LsTls~~--~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~   80 (170)
T PF13883_consen    3 REEAAELARTLLHQSRWGTLSTLSTQ--KDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISE   80 (170)
T ss_dssp             TT-HHHHHHHHHHH-SEEEEEEE--S--GGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEG
T ss_pred             hHHHHHHHHHHHhhCCEEEEEeccCC--CCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEec
Confidence            46789999999999999999999852  235899999999999    788999999999999999999999999999998


Q ss_pred             cCCC----------ccceeEEEEEEEEEeCCcchHHHHHHHHHHhCCCCC-CCCC---CceEEEEEeeeeeEEEecCCcc
Q 016598          214 PGWS----------GLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGP-SQQW---GNFYYFRMQDISDIYFIGGFGT  279 (386)
Q Consensus       214 ~~~~----------~~a~~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~-~~~~---~Df~~~rL~~~e~V~~VgGFG~  279 (386)
                      .+..          .++++||||+|++++|++++.+.++++|+++||+++ |.+.   +||.||||+ |++|+||||||+
T Consensus        81 ~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~-i~~v~~vgGFG~  159 (170)
T PF13883_consen   81 PQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLE-IERVYLVGGFGG  159 (170)
T ss_dssp             GGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEE-EEEEEEE-SSSS
T ss_pred             CCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEE-EEEEEEECccCC
Confidence            7532          248999999999999998888889999999999998 8899   999999998 999999999999


Q ss_pred             eEEecccchhc
Q 016598          280 VAWVDVKEYEA  290 (386)
Q Consensus       280 a~~V~~eey~a  290 (386)
                      ++||+++||..
T Consensus       160 ~~~i~~~~Y~~  170 (170)
T PF13883_consen  160 AAWISAEEYYN  170 (170)
T ss_dssp             -EEE-HHHHHH
T ss_pred             ceEeCHHHhcC
Confidence            99999999963

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
2arz_A247 Crystal Structure Of Protein Of Unknown Function Fr 3e-10
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From Pseudomonas Aeruginosa Length = 247 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 17/200 (8%)
Query: 159 TVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSG 218
            V+S    +  G+PFGS+V +  D+ G P+   S +A HT NL ADPRC+++V   G   
Sbjct: 22  AVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAED 81
Query: 219 L-SNARVTIFGDIFPLPEHQQEWAHKQYI------AKHHQGPSQQWGNFYYFRMQDISDI 271
           + +  R+T+  +   L E +   A ++Y       A +H+       +F ++ +Q +   
Sbjct: 82  IQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRV-----HDFDFWVLQPV-QW 135
Query: 272 YFIGGFGTVAWVDVKEYEALLPDKIAVEGG--EHYLKELNAAFSKLLKELLSAETEVDDA 329
            FIGGFG + W+  +      P     E G  EH   +  AA +  ++  L+       A
Sbjct: 136 RFIGGFGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVE--LAGLPAHAAA 193
Query: 330 AIISLDSKGIDVRVRQGAQF 349
            +  +D++G  +R+ QG  +
Sbjct: 194 QLAGIDTEGFHLRIGQGLHW 213

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 1e-44
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 3e-37
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 8e-37
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 2e-26
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 1e-13
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 1e-12
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 2e-08
1rfe_A162 Hypothetical protein RV2991; structural genomics, 2e-07
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 2e-07
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
 Score =  154 bits (389), Expect = 1e-44
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 16/244 (6%)

Query: 139 PRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHT 198
                  R+++  +R A L T+         GYP+ +  +   +  G P F  + L +H 
Sbjct: 26  FEAVRVARDVLHTSRTAALATL-----DPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHA 80

Query: 199 RNLLADPRCTLVVQIPGWSG-LSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQ-Q 256
           RN+  D R ++ +   G    L+  R+T+ G    +   +   A  +YIA++ +      
Sbjct: 81  RNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 140

Query: 257 WGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIA--VEGGEHYLKELNAAFSK 314
             +   +R++    +   GG    A                  +   E     LNA   +
Sbjct: 141 LPDTRLYRLR-TEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGE 199

Query: 315 LLKELLSAETEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGK 374
             +  + A  +     I S+D  GID+     +  ++ R+ F     VETL++ + AL +
Sbjct: 200 ASRLAVLAGAKTGRWKITSIDPDGIDLA----SASDLARLWFA--ERVETLKQFEKALAQ 253

Query: 375 VIKK 378
           ++K 
Sbjct: 254 LLKG 257
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 162 Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 100.0
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.97
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.95
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.95
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.92
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.88
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.51
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.51
2hq7_A146 Protein, related to general stress protein 26(GS2 99.5
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 99.47
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.45
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.44
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.43
2fhq_A141 Putative general stress protein; alpha-beta struct 99.42
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.42
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.42
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 99.41
2re7_A134 Uncharacterized protein; general stress protein CO 99.37
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.29
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.29
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.26
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.25
2hti_A185 BH0577 protein; structural genomics, joint center 99.24
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.23
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.21
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.2
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.14
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.14
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.13
2qea_A160 Putative general stress protein 26; structural gen 99.1
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.09
2fur_A209 Hypothetical protein; structural genomics, joint c 99.05
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.04
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.0
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 98.85
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 98.76
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 98.69
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 98.64
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 98.59
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 98.54
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 98.46
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 98.44
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 98.28
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 97.54
3in6_A148 FMN-binding protein; structural genomics, joint ce 97.29
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 96.98
3a6r_A122 FMN-binding protein; electron transport, flavoprot 96.94
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 96.78
3r5z_A145 Putative uncharacterized protein; split barrel-lik 96.65
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
Probab=100.00  E-value=2.2e-49  Score=379.48  Aligned_cols=225  Identities=20%  Similarity=0.278  Sum_probs=202.2

Q ss_pred             CChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCC-C
Q 016598          139 PRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW-S  217 (386)
Q Consensus       139 p~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~-~  217 (386)
                      ...++.+|+||+++++|+|||+++     .+|+||+|+|+|++|.+|.+||+++.++.|++||++||||||+|.++++ +
T Consensus        26 ~~~~~~ar~lL~~~~~g~LaTv~~-----~dG~P~~s~v~y~~d~~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d  100 (258)
T 3dnh_A           26 FEAVRVARDVLHTSRTAALATLDP-----VSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGD  100 (258)
T ss_dssp             CCHHHHHHHHHHHCCEEEEEEECT-----TTCCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHhCCEEEEEeccC-----CCCceEEEEEEEEECCCCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCC
Confidence            457999999999999999999971     4899999999999998999999999999999999999999999998764 5


Q ss_pred             ccceeEEEEEEEEEeCCcchHHHHHHHHHHhCCCCC-CCCCCceEEEEEeeeeeEEEecCCcc-eEEecccchhc--cCC
Q 016598          218 GLSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGP-SQQWGNFYYFRMQDISDIYFIGGFGT-VAWVDVKEYEA--LLP  293 (386)
Q Consensus       218 ~~a~~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~-~~~~~Df~~~rL~~~e~V~~VgGFG~-a~~V~~eey~a--A~P  293 (386)
                      +..++||||+|+++.+++++.+.++++|+++||+++ |.+++||.||||+ |++|+||+|||+ ++||+++||.+  |.|
T Consensus       101 ~~~~~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~~df~l~rl~-~~~v~~v~GFG~~a~~v~~~d~~~~~a~~  179 (258)
T 3dnh_A          101 ALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLR-TEGVQINGGPARNASNITPADLRTDLSGA  179 (258)
T ss_dssp             GGGSCEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHHHTSSTTEEEEEEE-EEEEEEEC------CCCCHHHHSCCCTTC
T ss_pred             hhhCCeEEEEEEEEEcCchHHHHHHHHHHHHCcChHHcccCCCeEEEEEE-EeEEEEEcccCcccccCCHHHhcccCCCC
Confidence            678899999999999999888889999999999997 8889999999998 999999999999 99999999999  889


Q ss_pred             cchhcccchhHHHHHHHHHHHHHHHHhccc--CCCCcEEEEeecCCCcEEEEecCCcceEEEEecCCCCCCCCHHHHHHH
Q 016598          294 DKIAVEGGEHYLKELNAAFSKLLKELLSAE--TEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTA  371 (386)
Q Consensus       294 Dpla~~~e~~il~HMN~dH~d~L~~ll~~~--~~~~~a~mlgID~~G~dlrv~~~~~~~~~RIpF~~~~pv~d~~ear~a  371 (386)
                      ||++ +.+++||+|||+|| +++..||+ +  ..+++|+|++||++||||+++.    ..+||+|+     ++.+++|.+
T Consensus       180 d~l~-~~~~~ii~hmN~dH-d~l~~~~~-~~~~~~~~a~~~~vD~~G~dl~~~~----~~~Ri~F~-----~d~~~~r~~  247 (258)
T 3dnh_A          180 EELM-AAAESEATRLNAIK-GEASRLAV-LAGAKTGRWKITSIDPDGIDLASAS----DLARLWFA-----ERVETLKQF  247 (258)
T ss_dssp             HHHH-HHHHHHHHHHHTST-THHHHHHH-HTTCCCSSCEEEEEETTEEEEECSS----CEEEEECS-----SCCCSHHHH
T ss_pred             chhH-HHHHHHHHHHHhhH-HHHHHHHH-hCCCCCCcEEEEEEccCcCEEEECC----EEEEeeCC-----CCHHHHHHH
Confidence            9999 56789999999999 99999998 4  4467899999999999999943    68999995     788999999


Q ss_pred             HHHHHHHHHh
Q 016598          372 LGKVIKKGKV  381 (386)
Q Consensus       372 Lv~L~~~a~~  381 (386)
                      |++|+++|+.
T Consensus       248 lv~m~~~ar~  257 (258)
T 3dnh_A          248 EKALAQLLKG  257 (258)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHhhc
Confidence            9999999875
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 4e-49
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 3e-42
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 3e-23
d1w9aa_142 b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobac 0.003
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  163 bits (414), Expect = 4e-49
 Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 15/240 (6%)

Query: 146 RNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADP 205
           R L+ +   A L T       +  G+PFGS+V +  D+ G P+   S +A HT NL ADP
Sbjct: 9   RELLLKEYRAVLSTH----SKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADP 64

Query: 206 RCTLVVQIPGWSGLSNA-RVTIFGDIFPLPEHQQEWAHKQYIAKHHQGPSQQWGNFYYFR 264
           RC+++V   G   +    R+T+  +   L E +   A ++Y     +       + + F 
Sbjct: 65  RCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFW 124

Query: 265 MQDISDIYFIGGFGTVAWVDVKEYEALLPDKIAVEGGEHYLKELNAAFSKLLKELLSAET 324
           +       FIGGFG + W+  +      P     E G   ++ +N+  +  +   +    
Sbjct: 125 VLQPVQWRFIGGFGAIHWLAAERVPLANPFAGEAERGM--VEHMNSDHAAAIAHYVELAG 182

Query: 325 EVDD--AAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKVIKKGKVH 382
                 A +  +D++G  +R+ QG    +  + F            + AL ++ +  +  
Sbjct: 183 LPAHAAAQLAGIDTEGFHLRIGQG----LHWLPFP--AACGNPGAVRQALVQLARAERWP 236
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 100.0
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.93
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.46
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.42
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.4
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.39
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.35
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.34
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.33
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.3
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.13
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 98.81
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 98.8
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 98.78
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 97.61
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 97.45
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 97.41
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 97.38
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 97.34
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.8e-53  Score=399.23  Aligned_cols=231  Identities=23%  Similarity=0.404  Sum_probs=212.6

Q ss_pred             ChHHHHHHHHHhCCeEEEEeecCcccCCCCCcceeeeeeeeeCCCCCeEEEeCCCchhhhhhhcCCCeEEEEEccCC-Cc
Q 016598          140 RPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGW-SG  218 (386)
Q Consensus       140 ~pAe~ARtLL~~a~~a~LATv~~~~~~~~dG~P~gS~V~ya~D~dG~pi~lvS~la~HtrNL~~dpRvSL~V~~~~~-~~  218 (386)
                      ..|+.||+||+++++|+|||+++    +.+|+||+|+|+|++|++|+|||++|.++.|++||.+||||||+|.++++ ++
T Consensus         3 e~a~~aR~ll~~~~~~~LsT~~~----~~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~~~~~~~   78 (238)
T d2arza1           3 EAAKNARELLLKEYRAVLSTHSK----KWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDI   78 (238)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECS----SSTTCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSST
T ss_pred             HHHHHHHHHHhhCCeEEEEecCC----CCCCCceEEEEEEEECCCCCEEEEEecchHhhHhhhcCCcEEEEEEcCCcccc
Confidence            36899999999999999999974    24799999999999999999999999999999999999999999998775 57


Q ss_pred             cceeEEEEEEEEEeCCcchHHHHHHHHHHhCCCCC-CCCCCceEEEEEeeeeeEEEecCCcceEEecccchhccCCcchh
Q 016598          219 LSNARVTIFGDIFPLPEHQQEWAHKQYIAKHHQGP-SQQWGNFYYFRMQDISDIYFIGGFGTVAWVDVKEYEALLPDKIA  297 (386)
Q Consensus       219 ~a~~RVTL~G~a~~v~~ee~~~a~~~yl~rhP~a~-~~~~~Df~~~rL~~~e~V~~VgGFG~a~~V~~eey~aA~PDpla  297 (386)
                      ..+.|+|+.|+++++++++.++++++|+++||+++ |.+++||.||+|+ |++++||+|||+++||++++|..+.|++. 
T Consensus        79 ~~~~R~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~~~~~~Df~~~~l~-~~~~~~V~GFG~a~~i~~~~~~~~~~~~~-  156 (238)
T d2arza1          79 QAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQ-PVQWRFIGGFGAIHWLAAERVPLANPFAG-  156 (238)
T ss_dssp             TSSCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTTCBTTBBEEEEEEE-EEEEEEECTTCCEEEEETTTSCCCCTTTT-
T ss_pred             ccccceeeeeeeEecCchHHHHHHHHHHHhccchhhhcccCcEEEEEEe-eeEEEEEcCCCccccccHHHhhhccchhh-
Confidence            78899999999999999888889999999999998 8899999999997 99999999999999999999998877654 


Q ss_pred             cccchhHHHHHHHHHHHHHHHHhccc--CCCCcEEEEeecCCCcEEEEecCCcceEEEEecCCCCCCCCHHHHHHHHHHH
Q 016598          298 VEGGEHYLKELNAAFSKLLKELLSAE--TEVDDAAIISLDSKGIDVRVRQGAQFNIQRVTFEDGHTVETLEEAKTALGKV  375 (386)
Q Consensus       298 ~~~e~~il~HMN~dH~d~L~~ll~~~--~~~~~a~mlgID~~G~dlrv~~~~~~~~~RIpF~~~~pv~d~~ear~aLv~L  375 (386)
                       +.+++||+|||+||++++..|+++.  ...+.|+|++||++||||++++    ..+||||++  |+++++++|.+|++|
T Consensus       157 -~~~~~ii~hmN~dH~d~l~~~~~~~~~~~~~~a~m~~iD~~G~~l~~~~----~~~ri~F~~--~~~~~~~~r~~lv~l  229 (238)
T d2arza1         157 -EAERGMVEHMNSDHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQ----GLHWLPFPA--ACGNPGAVRQALVQL  229 (238)
T ss_dssp             -HHHHHHHHHHHHHCHHHHHHHHHHHCCCCSSCCEEEEECSSEEEEEETT----EEEEEECSS--CCCSHHHHHHHHHHH
T ss_pred             -hhhHHHHhhcchhhHHHHHHHHHHhCCCCCCceEEEEEccCcCEEEECC----EEEEEeCCC--cCCCHHHHHHHHHHH
Confidence             4568999999999999999999863  5567899999999999999965    489999999  999999999999999


Q ss_pred             HHHHHhhc
Q 016598          376 IKKGKVHN  383 (386)
Q Consensus       376 ~~~a~~~~  383 (386)
                      +++||.|+
T Consensus       230 ~~~ar~~~  237 (238)
T d2arza1         230 ARAERWPT  237 (238)
T ss_dssp             HHCSSCCC
T ss_pred             HHHhhccC
Confidence            99999875
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure