Citrus Sinensis ID: 016603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKLQI
cHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccHHHHHHHHHcccccccccccHcHccccccHHHHHcccccccccccHHcccccccEEEEEEEccccccccccccccccEEEEEEccccccEHHHHHHcHHHHHHHccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHccccHHHHHccHHHHHHHHccccccccHHHHcHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEccccccccEcccccccEcccccccHHHccEccccHHHHHHHHHccccccccccccEcccEHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MGRALLSHFLIvsnssprlvsslkcrsrgglpskycktpglirqnrnlathngcgfrcycnvslseptapvassssvkkrivsgvqptgsihlGNYLGAIKNWIALQNSYETLFFIVDLHaitlpydtqqLSKATRETAAIYLACgidnskasVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEkshkaggenvGVALLTYPVLMASDILlyqsdfvpvgedqKQHLELTRELAERVNYLYGgrkwkklggrggaifkvpeplippagarvMSLTDGlskmsksapsdqsrinlldpkdvIANKIkrcktdssaglefdnlerpecnnLLSIYQLISGKTKGEVAEECqnmnwgtfkpLLTDALIEHLHPIQSWQMALQKLQI
MGRALLSHFlivsnssprlvsslkcrsrgglpskycktpglIRQNRNLATHNGCGFRCYCNVSLSEPTapvassssvkKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYggrkwkklggrGGAIFkvpeplippaGARVMSLTDGLSKMSksapsdqsrinlldpkdviANKIKRCKtdssaglefdnlerpeCNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKLQI
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNylyggrkwkklggrggAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKLQI
*****LSHFLIVS******V**LKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL****************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIP*********************************DVIANKIKRCK****AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMAL*****
******S*FLIVSNSSPR**************************************************************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF***************LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMS****************SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKL**
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS**************RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD*************SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKLQI
*****L****IVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS***********VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKLQ*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKLQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q8DHG3330 Tryptophan--tRNA ligase O yes no 0.740 0.866 0.644 1e-107
Q8YXE4335 Tryptophan--tRNA ligase O yes no 0.748 0.862 0.618 1e-106
Q7TV34337 Tryptophan--tRNA ligase O yes no 0.748 0.857 0.575 7e-98
Q7VBM9339 Tryptophan--tRNA ligase O yes no 0.769 0.876 0.570 2e-96
P73655337 Tryptophan--tRNA ligase O N/A no 0.751 0.860 0.591 6e-96
Q7TTU9337 Tryptophan--tRNA ligase O yes no 0.751 0.860 0.57 3e-94
Q7NCG8336 Tryptophan--tRNA ligase O yes no 0.751 0.863 0.552 3e-93
Q7V286338 Tryptophan--tRNA ligase O yes no 0.748 0.855 0.543 6e-92
Q92HR1330 Tryptophan--tRNA ligase O yes no 0.759 0.887 0.485 3e-78
Q9ZD76330 Tryptophan--tRNA ligase O yes no 0.746 0.872 0.483 5e-78
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1 Back     alignment and function desciption
 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 223/295 (75%), Gaps = 9/295 (3%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
           ++SGVQPTGS+HLGNYLGAI+NW+A Q  YE  F +VDLHAIT+P+D  +L+  T   AA
Sbjct: 1   MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
           +YLACGID + A++FVQSHV AH EL WLL+  TP+ WL  MIQFKEK+ K G ENV   
Sbjct: 61  LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQG-ENVAAG 119

Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
           LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+   +          I 
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171

Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLE 320
           K+PEPLIP AGARVMSLTDG  KMSKS PS+ SRINLLD  D I  KIKRCKTD   GL 
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCKTDPIRGLA 231

Query: 321 FDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 375
           FD+ +RPE NNLLS+YQ+++GKTK  VA EC +M WG FKPLLTDA+I  L PIQ
Sbjct: 232 FDDPDRPEANNLLSLYQVLTGKTKEAVAAECADMGWGQFKPLLTDAVIATLEPIQ 286

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpS PE=3 SV=2 Back     alignment and function description
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E) GN=trpS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
255550960412 tryptophanyl-tRNA synthetase, putative [ 0.953 0.893 0.845 0.0
225429361416 PREDICTED: tryptophanyl-tRNA synthetase 0.963 0.894 0.810 1e-176
449436894414 PREDICTED: tryptophan--tRNA ligase-like 0.955 0.891 0.805 1e-174
224075399403 predicted protein [Populus trichocarpa] 0.917 0.878 0.812 1e-172
356518366393 PREDICTED: tryptophanyl-tRNA synthetase- 0.826 0.811 0.865 1e-164
356510049398 PREDICTED: tryptophanyl-tRNA synthetase- 0.774 0.751 0.913 1e-161
57899972399 putative tryptophanyl-tRNA synthetase [O 0.919 0.889 0.746 1e-155
357136379399 PREDICTED: tryptophanyl-tRNA synthetase- 0.919 0.889 0.744 1e-154
357136377408 PREDICTED: tryptophanyl-tRNA synthetase- 0.932 0.882 0.741 1e-153
242058649405 hypothetical protein SORBIDRAFT_03g03427 0.935 0.891 0.725 1e-153
>gi|255550960|ref|XP_002516528.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223544348|gb|EEF45869.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/375 (84%), Positives = 337/375 (89%), Gaps = 7/375 (1%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGRALLS FL+ SNS   L S+    S  GL  +Y K+P LI QN      +   FRC+C
Sbjct: 1   MGRALLSQFLL-SNSPTCLAST--SLSLNGLRRQYLKSPRLISQN----ARHAAAFRCHC 53

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           +VS ++P AP +SSS+VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN+YETLFFIVDLH
Sbjct: 54  SVSAAQPDAPASSSSAVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNTYETLFFIVDLH 113

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPYDT QLSKATR TAAIYLACG+DNS+ASVFVQSHVRAHVELMWLLSSATPIGWLN
Sbjct: 114 AITLPYDTPQLSKATRNTAAIYLACGVDNSRASVFVQSHVRAHVELMWLLSSATPIGWLN 173

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 174 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 233

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
           NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL+KMSKSAPSDQSRINLLDP
Sbjct: 234 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLAKMSKSAPSDQSRINLLDP 293

Query: 301 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 360
           KDVIANKIKRCKTDS  GLEFDN ERPECNNLLS+YQL+SGKTK EVA+ECQ+MNWGTFK
Sbjct: 294 KDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSVYQLVSGKTKEEVAQECQDMNWGTFK 353

Query: 361 PLLTDALIEHLHPIQ 375
           PLLTDALI HLHPIQ
Sbjct: 354 PLLTDALIGHLHPIQ 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225429361|ref|XP_002273029.1| PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera] gi|296081565|emb|CBI20570.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436894|ref|XP_004136227.1| PREDICTED: tryptophan--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075399|ref|XP_002304617.1| predicted protein [Populus trichocarpa] gi|222842049|gb|EEE79596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518366|ref|XP_003527850.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356510049|ref|XP_003523753.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|57899972|dbj|BAD87908.1| putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gi|125527667|gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gi|125571983|gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357136379|ref|XP_003569782.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357136377|ref|XP_003569781.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 1 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242058649|ref|XP_002458470.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] gi|241930445|gb|EES03590.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2043570412 OVA4 "ovule abortion 4" [Arabi 0.935 0.876 0.677 5.3e-127
TIGR_CMR|BA_1188329 BA_1188 "tryptophanyl-tRNA syn 0.727 0.854 0.477 4.1e-65
TIGR_CMR|ECH_0167333 ECH_0167 "tryptophanyl-tRNA sy 0.730 0.846 0.463 8.5e-65
TIGR_CMR|APH_0035331 APH_0035 "tryptophanyl-tRNA sy 0.735 0.858 0.474 2.6e-63
TIGR_CMR|SPO_0392338 SPO_0392 "tryptophanyl-tRNA sy 0.746 0.852 0.440 7.9e-62
UNIPROTKB|P00954334 trpS "tryptophanyl-tRNA synthe 0.735 0.850 0.451 5.5e-61
TIGR_CMR|SO_0294332 SO_0294 "tryptophanyl-tRNA syn 0.753 0.876 0.438 7.1e-61
TIGR_CMR|CPS_0480335 CPS_0480 "tryptophanyl-tRNA sy 0.738 0.850 0.443 1e-59
UNIPROTKB|P67590336 trpS "Tryptophan--tRNA ligase" 0.756 0.869 0.426 1.5e-58
TIGR_CMR|NSE_0213330 NSE_0213 "tryptophanyl-tRNA sy 0.756 0.884 0.435 1.9e-58
TAIR|locus:2043570 OVA4 "ovule abortion 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 258/381 (67%), Positives = 295/381 (77%)

Query:     1 MGRAL-LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
             MG A  LSHFLI+S+S  R        SR G  ++    P  +  + +  +  G GFRC 
Sbjct:     1 MGHATSLSHFLILSSS--RF-------SRLGSLTRLLSKPTSLSGSFSSISVTGQGFRCC 51

Query:    60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
             C+V+ ++ T+P     SVKKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ++YETLF IVD 
Sbjct:    52 CSVA-TDDTSP-----SVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFIIVDH 105

Query:   120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
             HAITLPYDT+QL KAT +TAA+YLACGID SKASVFVQSHV AHVELMWLL S+TPIGWL
Sbjct:   106 HAITLPYDTRQLGKATTDTAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWL 165

Query:   180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
              KMIQFKEKS K G EN  V L TYP LM +DILLYQSDFVPVGEDQKQH+EL RE+A+R
Sbjct:   166 QKMIQFKEKSRKEGVENASVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQR 225

Query:   240 VNXXXXXXX----XXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295
             VN                    ++FK+PEPLIP AGARVMSLTDGLSKMSKSAPSDQSRI
Sbjct:   226 VNHLYGGKKWKKLGGYEIFRGGSLFKIPEPLIPQAGARVMSLTDGLSKMSKSAPSDQSRI 285

Query:   296 NLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN 355
             NLLD KD+I +KIKRCKTDS AGLEFDN ERPECNNLLSIYQ++SGK K EV EEC++M+
Sbjct:   286 NLLDSKDLIVDKIKRCKTDSFAGLEFDNAERPECNNLLSIYQIVSGKKKEEVMEECKDMS 345

Query:   356 WGTFKPLLTDALIEHLHPIQS 376
             WGTFKPLL DALIEHL PIQ+
Sbjct:   346 WGTFKPLLADALIEHLSPIQA 366
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
TIGR_CMR|BA_1188 BA_1188 "tryptophanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0167 ECH_0167 "tryptophanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0035 APH_0035 "tryptophanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0392 SPO_0392 "tryptophanyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P00954 trpS "tryptophanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0294 SO_0294 "tryptophanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0480 CPS_0480 "tryptophanyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P67590 trpS "Tryptophan--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0213 NSE_0213 "tryptophanyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7VBM9SYW_PROMA6, ., 1, ., 1, ., 20.57000.76940.8761yesno
Q7TV34SYW_PROMM6, ., 1, ., 1, ., 20.57520.74870.8575yesno
Q7V286SYW_PROMP6, ., 1, ., 1, ., 20.54330.74870.8550yesno
Q8DHG3SYW_THEEB6, ., 1, ., 1, ., 20.64400.74090.8666yesno
Q7NCG8SYW_GLOVI6, ., 1, ., 1, ., 20.55260.75120.8630yesno
Q7TTU9SYW_SYNPX6, ., 1, ., 1, ., 20.570.75120.8605yesno
Q8YXE4SYW_NOSS16, ., 1, ., 1, ., 20.61870.74870.8626yesno
Q9ZJX4SYW_HELPJ6, ., 1, ., 1, ., 20.50160.73830.8742yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
PLN02886389 PLN02886, PLN02886, aminoacyl-tRNA ligase 0.0
PRK00927333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 1e-173
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 1e-129
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 1e-119
TIGR00233327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 1e-108
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 7e-87
PRK12282333 PRK12282, PRK12282, tryptophanyl-tRNA synthetase I 2e-71
PRK12283398 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; 7e-66
PRK12556332 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; 8e-59
PRK12284 431 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; 4e-46
cd00395273 cd00395, Tyr_Trp_RS_core, catalytic core domain of 4e-33
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 3e-15
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 6e-09
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 1e-07
TIGR00234377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 7e-07
cd00805269 cd00805, TyrRS_core, catalytic core domain of tyro 0.001
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  666 bits (1720), Expect = 0.0
 Identities = 261/350 (74%), Positives = 285/350 (81%), Gaps = 6/350 (1%)

Query: 27  SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
           S  G   +    PG +  +   A+   C   C    + + P        + KKR+VSGVQ
Sbjct: 1   SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54

Query: 87  PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 146
           PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55  PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114

Query: 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206
           ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174

Query: 207 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 266
           LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234

Query: 267 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER 326
           IPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS  GLEFDN ER
Sbjct: 235 IPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPER 294

Query: 327 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQS 376
           PECNNLLSIYQL++GKTK EV  EC +M WG FKPLLTDALIEHL PIQ 
Sbjct: 295 PECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV 344

Length = 389
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
PLN02886389 aminoacyl-tRNA ligase 100.0
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
PRK05912408 tyrosyl-tRNA synthetase; Validated 100.0
PRK13354410 tyrosyl-tRNA synthetase; Provisional 100.0
KOG2144360 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr 100.0
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
KOG2145397 consensus Cytoplasmic tryptophanyl-tRNA synthetase 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 100.0
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
KOG2623 467 consensus Tyrosyl-tRNA synthetase [Translation, ri 99.86
cd00808239 GluRS_core catalytic core domain of discriminating 99.65
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.45
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.2
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 98.92
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 98.91
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.89
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.81
cd00674353 LysRS_core_class_I catalytic core domain of class 98.76
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 98.7
PLN02627 535 glutamyl-tRNA synthetase 98.69
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 98.67
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.61
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 98.56
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.5
PLN03233 523 putative glutamate-tRNA ligase; Provisional 98.46
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.46
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.38
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.35
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 98.34
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 98.34
PLN02907 722 glutamate-tRNA ligase 98.2
PLN02859 788 glutamine-tRNA ligase 98.16
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 98.01
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 97.94
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 97.93
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.84
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 97.68
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 97.66
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 97.64
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 97.64
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 97.59
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 97.58
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 97.55
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 97.51
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 97.51
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 97.49
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 97.41
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 96.82
PLN02946 557 cysteine-tRNA ligase 95.91
KOG1149 524 consensus Glutamyl-tRNA synthetase (mitochondrial) 95.53
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 93.85
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 93.83
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 93.55
PLN02224 616 methionine-tRNA ligase 92.92
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 92.35
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 91.85
PRK12268 556 methionyl-tRNA synthetase; Reviewed 89.97
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 88.91
PLN02610 801 probable methionyl-tRNA synthetase 88.42
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 87.3
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 87.19
PRK11893 511 methionyl-tRNA synthetase; Reviewed 86.68
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 85.99
PRK12267 648 methionyl-tRNA synthetase; Reviewed 85.96
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 85.69
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 85.54
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 85.49
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 83.95
PRK11893 511 methionyl-tRNA synthetase; Reviewed 83.82
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 83.08
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 82.93
PRK12418384 cysteinyl-tRNA synthetase; Provisional 82.04
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 81.9
PLN02563 963 aminoacyl-tRNA ligase 81.58
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 81.45
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 80.31
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 80.16
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-89  Score=685.47  Aligned_cols=328  Identities=78%  Similarity=1.196  Sum_probs=303.9

Q ss_pred             ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 016603           57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR  136 (386)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~  136 (386)
                      +|+++.++..+.++.+++.-.+.+||+||||||.+|||||+|++++|++||++++++|+||||||+|.+.++++++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~  104 (389)
T PLN02886         25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR  104 (389)
T ss_pred             hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence            44455554555556666665567999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEEcccchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcc
Q 016603          137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ  216 (386)
Q Consensus       137 ~~~~~~lA~Gldp~k~~i~~qS~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~  216 (386)
                      +++++|+|+||||+|+.||+||++++|.+++|+|+|.+++++|+|++|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus       105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~  184 (389)
T PLN02886        105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ  184 (389)
T ss_pred             HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999998776546789999999999999999999


Q ss_pred             cceeecccchhHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeee
Q 016603          217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN  296 (386)
Q Consensus       217 adivpvG~DQ~~h~elaRdia~k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~  296 (386)
                      +|+||||+||+||+|||||||+|||+.||....+++|++++.+|++|++++++.+++||||+||++|||||+|+++|+|+
T Consensus       185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~  264 (389)
T PLN02886        185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN  264 (389)
T ss_pred             CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence            99999999999999999999999999998665667777777889999999987668999998888899999997789999


Q ss_pred             ccCCHHHHHHHhhhcccCCCCCcccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHH
Q 016603          297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQS  376 (386)
Q Consensus       297 L~Dspe~I~~KI~kA~Td~~~~i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~  376 (386)
                      |+|+|++|++|||+|+||+.+++++++|++|+++|++.+|..+++.+++|++++|+++++++||+.|+++|+++|+|||+
T Consensus       265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pire  344 (389)
T PLN02886        265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV  344 (389)
T ss_pred             ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 016603          377 WQMALQKL  384 (386)
Q Consensus       377 r~~~~~~~  384 (386)
                      ||+++++.
T Consensus       345 r~~~l~~d  352 (389)
T PLN02886        345 RYEEIMSD  352 (389)
T ss_pred             HHHHHHcC
Confidence            99998753

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1i6m_A328 1.7 High Resolution Experimental Phases For Tryptop 3e-72
3prh_A388 Tryptophanyl-Trna Synthetase Val144pro Mutant From 1e-71
1d2r_A326 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl 4e-69
3fi0_A326 Crystal Structure Analysis Of B. Stearothermophilus 1e-68
1i6k_A328 1.7 High Resolution Experimental Phases For Tryptop 1e-68
3n9i_A346 Crystal Structure Of Tryptophanyl-Trna Synthetase F 6e-68
3sz3_A341 Crystal Structure Of Tryptophanyl-Trna Synthetase F 1e-61
3fhj_A300 Independent Saturation Of Three Trprs Subsites Gene 8e-58
3fhj_F297 Independent Saturation Of Three Trprs Subsites Gene 1e-56
3fhj_E293 Independent Saturation Of Three Trprs Subsites Gene 2e-56
3fhj_D287 Independent Saturation Of Three Trprs Subsites Gene 7e-56
3u1v_A338 X-Ray Structure Of De Novo Design Cysteine Esterase 2e-55
2el7_A337 Crystal Structure Of Tryptophanyl-Trna Synthetase F 4e-54
3fhj_B292 Independent Saturation Of Three Trprs Subsites Gene 2e-53
3fhj_C280 Independent Saturation Of Three Trprs Subsites Gene 4e-52
2yy5_A348 Crystal Structure Of Tryptophanyl-Trna Synthetase F 3e-47
3m5w_A322 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-37
2g36_A340 Crystal Structure Of Tryptophanyl-Trna Synthetase ( 6e-36
2a4m_A331 Structure Of Trprs Ii Bound To Atp Length = 331 2e-22
1yi8_B351 Crystal Structure Of Tryptophanyl Trrna Synthetase 2e-21
3a04_A372 Crystal Structure Of Tryptophanyl-Trna Synthetase F 8e-08
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 5e-07
1j1u_A306 Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta 5e-06
3n2y_A314 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 4e-05
2ag6_A314 Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S 9e-05
1zh0_A314 Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy 1e-04
1u7x_A312 Crystal Structure Of A Mutant M. Jannashii Tyrosyl- 2e-04
3p0j_A 690 Leishmania Major Tyrosyl-Trna Synthetase In Complex 2e-04
1zh6_A314 Crystal Structure Of P-Acetylphenylalanine-Trna Syn 2e-04
3qe4_A312 An Evolved Aminoacyl-Trna Synthetase With Atypical 8e-04
3d6u_A314 Crystal Structure Of 4-(Trifluoromethyldiazirinyl) 9e-04
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (686), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/298 (46%), Positives = 184/298 (61%), Gaps = 14/298 (4%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N                 
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
           +F +PE  IP  GAR+MSL D   KMSKS P+ ++ I LLD    I  KIK   TDS   
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQS 376
           + +D   +P  +NLL+IY  +SG++  E+  + +   +G FK  L   +IE L PIQ 
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQE 285
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B. Subtilis Length = 388 Back     alignment and structure
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna Synthetase: Domain Movements Fragment The Adenine Nucleotide Binding Site. Length = 326 Back     alignment and structure
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus Tryptophanyl-Trna Synthetase Complexed With Tryptophan, Amp, And Inorganic Phosphate Length = 326 Back     alignment and structure
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Yersinia Pestis Co92 Length = 346 Back     alignment and structure
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Vibrio Cholerae With An Endogenous Tryptophan Length = 341 Back     alignment and structure
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29, Northeast Structural Genomics Consortium Target Or52 Length = 338 Back     alignment and structure
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Thermus Thermophilus Length = 337 Back     alignment and structure
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Mycoplasma Pneumoniae Length = 348 Back     alignment and structure
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Length = 322 Back     alignment and structure
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340 Back     alignment and structure
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331 Back     alignment and structure
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351 Back     alignment and structure
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306 Back     alignment and structure
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314 Back     alignment and structure
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314 Back     alignment and structure
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetase In Complex With L-3-(2-Napthyl)alanine Length = 314 Back     alignment and structure
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312 Back     alignment and structure
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Tyrosinol, Triclinic Crystal Form 1 Length = 690 Back     alignment and structure
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314 Back     alignment and structure
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical Polysubstrate Specificity Length = 312 Back     alignment and structure
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl) Phenylalanyl-Trna Synthetase Length = 314 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 0.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 0.0
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 1e-180
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 1e-180
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 1e-177
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 1e-162
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 1e-159
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 1e-143
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 1e-137
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 8e-95
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 1e-92
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 3e-63
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 9e-90
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 4e-87
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 2e-72
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 8e-48
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 6e-46
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 1e-45
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 2e-45
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 5e-44
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 9e-42
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 4e-39
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 3e-24
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 7e-19
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 2e-14
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 6e-14
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 6e-14
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 4e-13
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
 Score =  508 bits (1311), Expect = 0.0
 Identities = 139/314 (44%), Positives = 192/314 (61%), Gaps = 15/314 (4%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60

Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179

Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
           YG             IFK+PEP IP AGARVMSL D   KMSKS  +  + I LL+    
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227

Query: 304 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKP 361
           +  KIKR  TDS     + +D  ++   +NLL I   ++G++  E+  +     +G  K 
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKG 287

Query: 362 LLTDALIEHLHPIQ 375
            + DA+   L  +Q
Sbjct: 288 AVADAVSGMLSELQ 301
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388 Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.3
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.29
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.23
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.2
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.1
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.06
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.8
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.73
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 98.51
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 98.34
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 98.03
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 97.95
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 97.54
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 97.48
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 97.45
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 97.0
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 96.21
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 96.18
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 94.81
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 94.7
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 94.55
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 93.5
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 92.53
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 91.64
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 89.62
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 88.36
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 87.62
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 87.06
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 85.85
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 85.16
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 84.6
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 84.15
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 82.85
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 82.75
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 82.35
3sp1_A 501 Cysteinyl-tRNA synthetase; structural genomics, se 81.72
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 81.64
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 80.8
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=4.6e-83  Score=642.22  Aligned_cols=292  Identities=48%  Similarity=0.763  Sum_probs=270.5

Q ss_pred             ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 016603           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (386)
Q Consensus        79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS  158 (386)
                      .+||||++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||+||
T Consensus        36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS  115 (388)
T 3prh_A           36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS  115 (388)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred             CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHH
Q 016603          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (386)
Q Consensus       159 ~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~  238 (386)
                      +|++|.+++|+|+|.+++++|+|+++||++.+..  +++++|+|+||+||||||++|++|+||||+||+||+|||||||+
T Consensus       116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~  193 (388)
T 3prh_A          116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE  193 (388)
T ss_dssp             GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876543  67899999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCC
Q 016603          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG  318 (386)
Q Consensus       239 k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~  318 (386)
                      |||+.||.            +|.+|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus       194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~  261 (388)
T 3prh_A          194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI  261 (388)
T ss_dssp             HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred             HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence            99999984            488999999876689999988888999999988899999999999999999999999888


Q ss_pred             cccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHHhhc
Q 016603          319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQKL  384 (386)
Q Consensus       319 i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~~  384 (386)
                      ++++++++|+++|++.||+.+++++++|++++|.+.+|+|||+.|+++|+++|+|||+||+++++.
T Consensus       262 ~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~  327 (388)
T 3prh_A          262 VKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIES  327 (388)
T ss_dssp             CCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999999999999766999999999999999999999999998753
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 8e-82
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 4e-52
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 4e-48
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 2e-29
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 4e-18
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  251 bits (641), Expect = 8e-82
 Identities = 139/297 (46%), Positives = 184/297 (61%), Gaps = 14/297 (4%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS      + G
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N             R G 
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167

Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
           +F +PE  IP  GAR+MSL D   KMSKS P+ ++ I LLD    I  KIK   TDS   
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227

Query: 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 375
           + +D   +P  +NLL+IY  +SG++  E+  + +   +G FK  L   +IE L PIQ
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQ 284
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 100.0
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 100.0
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.8
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.73
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.33
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 95.37
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 94.74
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 94.32
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 93.75
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 91.16
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 89.76
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 88.35
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 88.15
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 87.54
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 86.27
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 85.34
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 85.09
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 84.73
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=9.9e-78  Score=590.31  Aligned_cols=291  Identities=48%  Similarity=0.764  Sum_probs=275.3

Q ss_pred             ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 016603           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (386)
Q Consensus        79 ~~i~tGi~PTG~lHLGnyl~~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qS  158 (386)
                      .|||||++|||.+|||||+|++++|++||++++++|+||||||+|+..+++++++++++++++|+|+|+||+++.||+||
T Consensus         2 ~~v~tG~~PSG~~HlG~~~g~i~~~~~lq~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS   81 (326)
T d1i6la_           2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (326)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGG
T ss_pred             CeeEeCcCCCCccHHHHHHHHHHHHHHHhCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEeec
Confidence            48999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhcccCHHHhhhhhchHHHHHhhCCCCcccccchhhHHHhhhhhhcccceeecccchhHHHHHHHHHHH
Q 016603          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (386)
Q Consensus       159 ~~~~~~~l~w~l~~~~~v~~L~r~~~~k~~~~~~~~~~~~~g~l~YP~LQAADil~~~adivpvG~DQ~~h~elaRdia~  238 (386)
                      ++++|.+++|++++.+++++|+|+.+||++.+.  .+++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~eltRdia~  159 (326)
T d1i6la_          82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG--KEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (326)
T ss_dssp             GCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHTT--CSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhhhhhhhhhhcccchhhccc--cccCCccccccccccchhHHhcCccccccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999987654  367899999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCcccccCCCCCCCeeeccCCHHHHHHHhhhcccCCCCC
Q 016603          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG  318 (386)
Q Consensus       239 k~n~~yg~~~~~~~g~~~~~~~~~P~~l~~~~~~~lpgL~dG~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~  318 (386)
                      |||+.||..            |..|...+...+++++++.||.+|||||+++++++|+|+|+|++|++||++|+||+.+.
T Consensus       160 r~n~~~~~~------------~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~a~td~~~~  227 (326)
T d1i6la_         160 RFNKRYGEL------------FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT  227 (326)
T ss_dssp             HHHHHHCSC------------CCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred             HhhhccCCc------------ccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHhhhccccCC
Confidence            999999853            66777766655578888889999999999988899999999999999999999999999


Q ss_pred             cccCCCCCCCcchHHHHHHhcCCCCHHHHHHHHccCChhhHHHHHHHHHHHhhHHHHHHHHHHhh
Q 016603          319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQSWQMALQK  383 (386)
Q Consensus       319 i~~~~~~~p~v~nll~i~~~~~~~~~eel~~~~~~l~~~dlK~~Lae~I~~~L~pir~r~~~~~~  383 (386)
                      ++++++++|+++|++.+|..+++.+.+++..+|++.+++|||+.|+++|+++|+|||+||+++.+
T Consensus       228 ~~~~~~~~p~~~~l~~i~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~PiRer~~~l~~  292 (326)
T d1i6la_         228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWME  292 (326)
T ss_dssp             CCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCCCccHHHHHHHHcCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999865
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure